rget_pdb 0.1.0

Download Protein files from rcsb.org
Documentation

PDBget

CLI program to download files from rcsb.org

Installation

From sources

git clone https://gitlab.com/philippe_noel/pdbget.git
cd pdbget
cargo install --path
pdbget --help

Usage

Get Protein files 0.1.0
Philippe Noel
Download Protein files on rcsb.org

USAGE:
    pdbget [OPTIONS] <PDBs>...

FLAGS:
    -h, --help       Prints help information
    -V, --version    Prints version information

OPTIONS:
    -o <Output>         Output folder where to store files [default: ./]
    -t <UriType>        File type to download. 'PDB', 'CIF', 'FASTA' [default: PDB]

ARGS:
    <PDBs>...    PDB identifiers

with the -t option, you can specify the output file format. Possible format are:

  • 'pdb' : PDB format
  • 'pdbgz' : GZ compression of a PDB file
  • 'cif' : CIF format
  • 'cifgz' : GZ compression of a CIF file
  • 'fasta' : FASTA sequence(s) of the protein
  • 'xml' : GZ compression of an XML file (uncompress XML are not provide on rcsb.org)