research-master 0.1.40

MCP server for searching and downloading academic papers from multiple research sources
Documentation
//! Zenodo research source implementation.
//!
//! Uses the Zenodo API for searching and retrieving research papers.
//! API documentation: <https://developers.zenodo.org>

use async_trait::async_trait;
use serde::Deserialize;
use std::sync::Arc;

use crate::models::{Paper, PaperBuilder, SearchQuery, SearchResponse, SourceType};
use crate::sources::{Source, SourceCapabilities, SourceError};
use crate::utils::{api_retry_config, with_retry, HttpClient};

const ZENODO_API_BASE: &str = "https://zenodo.org/api/records";

/// Zenodo research source
///
/// Uses the Zenodo API for searching and retrieving research papers.
/// Zenodo is free and requires no API key.
#[derive(Debug, Clone)]
pub struct ZenodoSource {
    client: Arc<HttpClient>,
}

impl ZenodoSource {
    pub fn new() -> Result<Self, SourceError> {
        Ok(Self {
            client: Arc::new(HttpClient::new()?),
        })
    }
}

impl Default for ZenodoSource {
    fn default() -> Self {
        Self::new().expect("Failed to create ZenodoSource")
    }
}

#[async_trait]
impl Source for ZenodoSource {
    fn id(&self) -> &str {
        "zenodo"
    }

    fn name(&self) -> &str {
        "Zenodo"
    }

    fn capabilities(&self) -> SourceCapabilities {
        SourceCapabilities::SEARCH | SourceCapabilities::DOI_LOOKUP
    }

    async fn search(&self, query: &SearchQuery) -> Result<SearchResponse, SourceError> {
        let max_results = query.max_results.min(1000);

        let url = format!(
            "{}?q={}&size={}&type=publication",
            ZENODO_API_BASE,
            urlencoding::encode(&query.query),
            max_results
        );

        let client = Arc::clone(&self.client);
        let url_for_retry = url.clone();

        let response = with_retry(api_retry_config(), || {
            let client = Arc::clone(&client);
            let url = url_for_retry.clone();
            async move {
                let request = client.get(&url);

                let response = request
                    .send()
                    .await
                    .map_err(|e| SourceError::Network(format!("Failed to search Zenodo: {}", e)))?;

                if !response.status().is_success() {
                    let status = response.status();
                    // Check if we got rate limited (often returns HTML)
                    if status == reqwest::StatusCode::TOO_MANY_REQUESTS {
                        tracing::debug!("Zenodo API rate-limited - returning empty results");
                        return Err(SourceError::Api("Zenodo rate-limited".to_string()));
                    }
                    let text = response.text().await.unwrap_or_default();
                    return Err(SourceError::Api(format!(
                        "Zenodo API returned status {}: {}",
                        status, text
                    )));
                }

                // Check content-type to ensure we got JSON
                let content_type = response
                    .headers()
                    .get(reqwest::header::CONTENT_TYPE)
                    .and_then(|v| v.to_str().ok())
                    .unwrap_or_default();
                if !content_type.contains("application/json") {
                    tracing::debug!(
                        "Zenodo returned non-JSON content-type: {} - rate-limited?",
                        content_type
                    );
                    return Err(SourceError::Api("Zenodo rate-limited".to_string()));
                }

                let json: ZenodoResponse = response.json().await.map_err(|e| {
                    SourceError::Parse(format!("Failed to parse Zenodo response: {}", e))
                })?;

                Ok(json)
            }
        })
        .await;

        // Handle rate limiting gracefully
        let response = match response {
            Ok(r) => r,
            Err(SourceError::Api(msg)) if msg.contains("rate-limited") => {
                tracing::debug!("Zenodo rate-limited - returning empty results");
                return Ok(SearchResponse::new(vec![], "Zenodo", &query.query));
            }
            Err(e) => return Err(e),
        };

        let total = response.hits.total.value;
        let papers: Result<Vec<Paper>, SourceError> = response
            .hits
            .hits
            .into_iter()
            .map(|item| self.parse_result(&item))
            .collect();

        let papers = papers?;
        let mut response = SearchResponse::new(papers, "Zenodo", &query.query);
        response.total_results = Some(total);
        Ok(response)
    }

    async fn get_by_doi(&self, doi: &str) -> Result<Paper, SourceError> {
        let clean_doi = doi
            .replace("https://doi.org/", "")
            .replace("doi:", "")
            .trim()
            .to_string();

        let url = format!(
            "{}?q=doi:\"{}\"",
            ZENODO_API_BASE,
            urlencoding::encode(&clean_doi)
        );

        let client = Arc::clone(&self.client);
        let url_for_retry = url.clone();

        let response: ZenodoResponse = with_retry(api_retry_config(), || {
            let client = Arc::clone(&client);
            let url = url_for_retry.clone();
            async move {
                let request = client.get(&url);

                let response = request.send().await.map_err(|e| {
                    SourceError::Network(format!("Failed to lookup DOI in Zenodo: {}", e))
                })?;

                if !response.status().is_success() {
                    return Err(SourceError::NotFound(format!(
                        "Paper not found in Zenodo: {}",
                        doi
                    )));
                }

                response.json().await.map_err(|e| {
                    SourceError::Parse(format!("Failed to parse Zenodo response: {}", e))
                })
            }
        })
        .await?;

        if let Some(hit) = response.hits.hits.into_iter().next() {
            self.parse_result(&hit)
        } else {
            Err(SourceError::NotFound(format!(
                "Paper not found in Zenodo: {}",
                doi
            )))
        }
    }
}

impl ZenodoSource {
    fn parse_result(&self, item: &ZenodoHit) -> Result<Paper, SourceError> {
        let id = item.id.to_string();
        let title = item.metadata.title.clone().unwrap_or_default();
        let abstract_text = item.metadata.description.clone().unwrap_or_default();

        let doi = item.metadata.doi.clone().unwrap_or_default();

        let authors: String = item
            .metadata
            .creators
            .iter()
            .filter_map(|c| c.name.clone())
            .collect::<Vec<_>>()
            .join("; ");

        let year = item.metadata.publication_date.clone().unwrap_or_default();
        let url = item.links.html.clone().unwrap_or_else(|| {
            if !doi.is_empty() {
                format!("https://doi.org/{}", doi)
            } else {
                format!("https://zenodo.org/record/{}", id)
            }
        });

        Ok(
            PaperBuilder::new(id, title, url, SourceType::Other("zenodo".to_string()))
                .authors(&authors)
                .published_date(&year)
                .abstract_text(&abstract_text)
                .doi(&doi)
                .build(),
        )
    }
}

/// Zenodo API response
#[derive(Debug, Deserialize)]
struct ZenodoResponse {
    hits: ZenodoHits,
}

#[derive(Debug, Deserialize)]
struct ZenodoHits {
    total: ZenodoTotal,
    hits: Vec<ZenodoHit>,
}

#[derive(Debug, Deserialize)]
struct ZenodoTotal {
    value: usize,
}

#[derive(Debug, Deserialize)]
struct ZenodoHit {
    id: usize,
    metadata: ZenodoMetadata,
    links: ZenodoLinks,
}

#[derive(Debug, Deserialize)]
struct ZenodoMetadata {
    title: Option<String>,
    description: Option<String>,
    doi: Option<String>,
    publication_date: Option<String>,
    creators: Vec<ZenodoCreator>,
}

#[derive(Debug, Deserialize)]
struct ZenodoCreator {
    name: Option<String>,
}

#[derive(Debug, Deserialize)]
struct ZenodoLinks {
    html: Option<String>,
}

#[cfg(test)]
mod tests {
    use super::*;

    #[test]
    fn test_source_creation() {
        let source = ZenodoSource::new();
        assert!(source.is_ok());
    }
}