Struct CompareArgs 

pub struct CompareArgs {
    pub input_a: PathBuf,
    pub input_b: String,
    pub reference: bool,
    pub catalog: Option<PathBuf>,
}

Fields

input_a: PathBuf

First input file (BAM, SAM, CRAM, .dict, or TSV)

input_b: String

Second input file, or reference ID from catalog

reference: bool

Treat second argument as a reference ID from the catalog

catalog: Option<PathBuf>

Path to custom catalog file (only used with –reference)

Trait Implementations

impl Args for CompareArgs

fn group_id() -> Option<Id>

Report the ArgGroup::id for this set of arguments

fn augment_args<'b>(__clap_app: Command) -> Command

Append to Command so it can instantiate Self via FromArgMatches::from_arg_matches_mut

fn augment_args_for_update<'b>(__clap_app: Command) -> Command

Append to Command so it can instantiate self via FromArgMatches::update_from_arg_matches_mut

impl FromArgMatches for CompareArgs

fn from_arg_matches(__clap_arg_matches: &ArgMatches) -> Result<Self, Error>

Instantiate Self from ArgMatches, parsing the arguments as needed.

fn from_arg_matches_mut( __clap_arg_matches: &mut ArgMatches, ) -> Result<Self, Error>

Instantiate Self from ArgMatches, parsing the arguments as needed.

fn update_from_arg_matches( &mut self, __clap_arg_matches: &ArgMatches, ) -> Result<(), Error>

Assign values from ArgMatches to self.

fn update_from_arg_matches_mut( &mut self, __clap_arg_matches: &mut ArgMatches, ) -> Result<(), Error>

Assign values from ArgMatches to self.