ref-solver 0.1.0

Solve reference genome identification from BAM/SAM headers
Documentation 
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# THIS FILE IS AUTOMATICALLY GENERATED BY CARGO
#
# When uploading crates to the registry Cargo will automatically
# "normalize" Cargo.toml files for maximal compatibility
# with all versions of Cargo and also rewrite `path` dependencies
# to registry (e.g., crates.io) dependencies.
#
# If you are reading this file be aware that the original Cargo.toml
# will likely look very different (and much more reasonable).
# See Cargo.toml.orig for the original contents.

[package]
edition = "2021"
rust-version = "1.75"
name = "ref-solver"
version = "0.1.0"
authors = ["Fulcrum Genomics"]
build = "build.rs"
exclude = [
    "deploy/",
    ".github/",
]
autolib = false
autobins = false
autoexamples = false
autotests = false
autobenches = false
description = "Solve reference genome identification from BAM/SAM headers"
readme = "README.md"
keywords = [
    "bioinformatics",
    "genomics",
    "bam",
    "sam",
    "reference-genome",
]
categories = [
    "command-line-utilities",
    "science",
]
license = "MIT"
repository = "https://github.com/fulcrumgenomics/ref-solver"

[lib]
name = "ref_solver"
path = "src/lib.rs"

[[bin]]
name = "ref-solver"
path = "src/main.rs"

[[test]]
name = "dos_tests"
path = "tests/dos_tests.rs"

[[test]]
name = "security_tests"
path = "tests/security_tests.rs"

[dependencies.anyhow]
version = "1.0"

[dependencies.axum]
version = "0.8"
features = ["multipart"]

[dependencies.bincode]
version = "1.3"

[dependencies.chrono]
version = "0.4"
features = ["serde"]

[dependencies.clap]
version = "4.5"
features = ["derive"]

[dependencies.flate2]
version = "1.0"

[dependencies.md5]
version = "0.7"

[dependencies.noodles]
version = "0.86"
features = [
    "sam",
    "bam",
    "cram",
    "vcf",
    "fasta",
]

[dependencies.open]
version = "5.0"

[dependencies.serde]
version = "1.0"
features = ["derive"]

[dependencies.serde_json]
version = "1.0"

[dependencies.tempfile]
version = "3.15"

[dependencies.thiserror]
version = "2.0"

[dependencies.tokio]
version = "1.43"
features = ["full"]

[dependencies.tower]
version = "0.5"
features = ["limit"]

[dependencies.tower-http]
version = "0.6"
features = [
    "fs",
    "limit",
    "timeout",
    "set-header",
]

[dependencies.tower_governor]
version = "0.6"

[dependencies.tracing]
version = "0.1"

[dependencies.tracing-subscriber]
version = "0.3"
features = ["env-filter"]

[dev-dependencies.assert_cmd]
version = "2.0"

[dev-dependencies.predicates]
version = "3.0"

[build-dependencies.serde_json]
version = "1.0"

[profile.release]
lto = true
codegen-units = 1
strip = true