redicat 0.4.1

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# See Cargo.toml.orig for the original contents.

[package]
edition = "2018"
name = "redicat"
version = "0.4.1"
authors = ["Li Jiaxuan <lijiaxaun2023@mail.sustech.edu.cn>"]
build = false
autolib = false
autobins = false
autoexamples = false
autotests = false
autobenches = false
description = "REDICAT - RNA Editing Cellular Assessment Toolkit: A highly parallelized utility for analyzing RNA editing events in single-cell RNA-seq data"
documentation = "https://github.com/aStudyingTurtle/redicat/blob/main/README.md"
readme = "README.md"
keywords = [
    "bioinformatics",
    "single-cell",
    "rna-editing",
    "rna-seq",
]
categories = ["science"]
license = "MIT"
repository = "https://github.com/aStudyingTurtle/redicat"

[lib]
name = "redicat_lib"
path = "src/lib/mod.rs"

[[bin]]
name = "redicat"
path = "src/main.rs"

[[bench]]
name = "bam2mtx_bench"
path = "benches/bam2mtx_bench.rs"
harness = false

[dependencies.ahash]
version = "0.8.12"

[dependencies.anndata]
version = "=0.6.1"

[dependencies.anndata-hdf5]
version = "0.5.0"

[dependencies.anyhow]
version = "1.0.98"

[dependencies.bio]
version = "0.41"

[dependencies.chrono]
version = "0.4.39"
features = ["clock"]
default-features = true

[dependencies.clap]
version = "4.5.45"
features = ["derive"]

[dependencies.crossbeam]
version = "0.8"

[dependencies.crossbeam-channel]
version = "0.5"

[dependencies.csv]
version = "1.3.1"

[dependencies.env_logger]
version = "0.9.3"

[dependencies.flate2]
version = "1.0.30"

[dependencies.grep-cli]
version = "0.1.11"

[dependencies.gzp]
version = "0.10"

[dependencies.itertools]
version = "0.10.5"

[dependencies.lazy_static]
version = "1.5.0"

[dependencies.log]
version = "0.4.27"

[dependencies.lru_time_cache]
version = "0.11.11"

[dependencies.memmap2]
version = "0.9.7"

[dependencies.nalgebra]
version = "0.33.2"

[dependencies.nalgebra-sparse]
version = "=0.10.0"

[dependencies.ndarray]
version = "0.15.6"

[dependencies.num_cpus]
version = "1.17.0"

[dependencies.once_cell]
version = "1.19.0"

[dependencies.parking_lot]
version = "0.12.1"

[dependencies.polars]
version = "0.45.1"
features = [
    "lazy",
    "temporal",
    "strings",
    "csv",
    "dtype-array",
    "parquet",
]

[dependencies.polars-arrow]
version = "0.45.1"

[dependencies.rayon]
version = "1.10.0"

[dependencies.rust-htslib]
version = "0.50.0"

[dependencies.rust-lapper]
version = "1.2"

[dependencies.rustc-hash]
version = "2.1.1"

[dependencies.serde]
version = "1.0.219"
features = ["derive"]

[dependencies.smallvec]
version = "1.15.1"

[dependencies.smartstring]
version = "0.2.10"
features = ["serde"]

[dependencies.sprs]
version = "0.11.2"

[dependencies.structopt]
version = "0.3.26"

[dependencies.tempfile]
version = "3.20.0"

[dependencies.termcolor]
version = "1.4.1"

[dependencies.thiserror]
version = "2.0.14"

[dev-dependencies.assert_approx_eq]
version = "1.1.0"

[dev-dependencies.criterion]
version = "0.7.0"
features = ["html_reports"]

[dev-dependencies.proptest]
version = "1.7.0"

[dev-dependencies.rstest]
version = "0.11.0"

[dev-dependencies.tempfile]
version = "3.20.0"

[target.x86_64-unknown-linux-gnu]

[profile.release]
opt-level = 3
lto = "fat"
codegen-units = 1
debug = 0
panic = "abort"
strip = true