redb 0.6.1

Rust Embedded DataBase
Documentation
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
use crate::tree_store::page_store::grouped_bitmap::{U64GroupedBitMap, U64GroupedBitMapMut};
use crate::Error;
use crate::Result;
use std::mem::size_of;

const ELEMENTS_OFFSET: usize = 0;
const CAPACITY_OFFSET: usize = ELEMENTS_OFFSET + size_of::<u32>();
const HEIGHT_OFFSET: usize = CAPACITY_OFFSET + size_of::<u32>();
const END_OFFSETS: usize = HEIGHT_OFFSET + size_of::<u32>();

#[derive(Clone)]
pub(crate) struct PageAllocator {
    // TODO: we can read these fields from the on-disk format, so remove them
    num_pages: usize,
    tree_level_offsets: Vec<(usize, usize)>,
}

// Stores a 64-way bit-tree of allocated pages.
// Does not hold a reference to the data, so that this structure can be initialized once, without
// borrowing the data array
//
// Data structure format:
// height: u32
// TODO: maybe remove the elements & capacity fields?
// elements: u32
// capacity: u32
// layer_ends: array of u32, ending offset in bytes of layers. Does not include the root layer
// root: u64
// subtree layer: 2-64 u64s
// ...consecutive layers. Except for the last level, all sub-trees of the root must be complete
impl PageAllocator {
    // TODO: this should take capacity as well as num pages
    pub(crate) fn new(num_pages: usize) -> Self {
        let mut tree_level_offsets = vec![];

        let mut offset = Self::tree_data_start(num_pages);
        // root level
        tree_level_offsets.push((offset, offset + size_of::<u64>()));
        offset += size_of::<u64>();

        // Intermediate levels
        if Self::required_tree_height(num_pages) > 2 {
            for i in 1..(Self::required_tree_height(num_pages) - 1) {
                let len = Self::required_subtrees(num_pages) * 64usize.pow(i as u32) / 8;
                tree_level_offsets.push((offset, offset + len));
                offset += len;
            }
        }

        // Leaf level
        if Self::required_tree_height(num_pages) > 1 {
            let len = (num_pages + 63) / 64 * size_of::<u64>();
            tree_level_offsets.push((offset, offset + len));
            offset += len;
        }

        assert_eq!(
            tree_level_offsets.len(),
            Self::required_tree_height(num_pages)
        );
        assert_eq!(offset, Self::required_space(num_pages));

        Self {
            num_pages,
            tree_level_offsets,
        }
    }

    pub(crate) fn init_new(data: &mut [u8], num_pages: usize) -> Self {
        assert!(data.len() >= Self::required_space(num_pages));
        // TODO: elements and capacity should be separate, and there should be a resize() method to change elements
        data[ELEMENTS_OFFSET..(ELEMENTS_OFFSET + size_of::<u32>())]
            .copy_from_slice(&(num_pages as u32).to_le_bytes());
        data[CAPACITY_OFFSET..(CAPACITY_OFFSET + size_of::<u32>())]
            .copy_from_slice(&(num_pages as u32).to_le_bytes());
        let height = Self::required_tree_height(num_pages);
        data[HEIGHT_OFFSET..(HEIGHT_OFFSET + size_of::<u32>())]
            .copy_from_slice(&(height as u32).to_le_bytes());
        // Initialize the memory, so that all pages are allocated
        U64GroupedBitMapMut::init_full(&mut data[Self::tree_data_start(num_pages)..]);

        let result = Self::new(num_pages);

        let mut index = END_OFFSETS;
        for (_, end) in result.tree_level_offsets.iter().skip(1) {
            data[index..(index + size_of::<u32>())].copy_from_slice(&(*end as u32).to_le_bytes());
            index += size_of::<u32>();
        }

        // Mark all the subtrees that don't exist
        for i in Self::required_subtrees(num_pages)..64 {
            result.get_level_mut(data, 0).set(i);
        }

        if result.get_height() > 1 {
            // Mark excess space in the leaves
            let mut leaf_level = result.get_level_mut(data, result.get_height() - 1);
            for i in num_pages..leaf_level.len() {
                leaf_level.set(i);
            }
        }

        if result.get_height() > 2 {
            // Mark excess index space in the last subtree
            let total_indexable_pages =
                result.get_level_mut(data, result.get_height() - 2).len() * 64;
            for i in (num_pages + 63)..total_indexable_pages {
                result.update_to_root(data, i, true);
            }
        }

        result
    }

    /// Returns the number of bytes required for the data argument of new()
    pub(crate) fn required_space(num_pages: usize) -> usize {
        let tree_space = if Self::required_tree_height(num_pages) == 1 {
            assert!(num_pages <= 64);
            // Space for root
            size_of::<u64>()
        } else if Self::required_tree_height(num_pages) == 2 {
            // Space for root
            size_of::<u64>() +
                // Space for the leaves
                U64GroupedBitMapMut::required_bytes(num_pages)
        } else {
            // Space for root
            size_of::<u64>() +
                // Space for the subtrees
                Self::required_subtrees(num_pages) * Self::required_interior_bytes_per_subtree(num_pages) +
                // Space for the leaves
                U64GroupedBitMapMut::required_bytes(num_pages)
        };

        Self::tree_data_start(num_pages) + tree_space
    }

    fn tree_data_start(capacity: usize) -> usize {
        END_OFFSETS + (Self::required_tree_height(capacity) - 1) * size_of::<u32>()
    }

    fn required_interior_bytes_per_subtree(num_pages: usize) -> usize {
        let subtree_height = Self::required_tree_height(num_pages) - 1;
        (1..subtree_height)
            .map(|i| 64usize.pow(i as u32))
            .sum::<usize>()
            / 8
    }

    fn required_subtrees(num_pages: usize) -> usize {
        let height = Self::required_tree_height(num_pages);
        let pages_per_subtree = 64usize.pow((height - 1) as u32);

        (num_pages + pages_per_subtree - 1) / pages_per_subtree
    }

    fn required_tree_height(num_pages: usize) -> usize {
        let mut height = 1;
        let mut storable = 64;
        while num_pages > storable {
            storable *= 64;
            height += 1;
        }

        height
    }

    pub(crate) fn count_free_pages(&self, data: &[u8]) -> usize {
        self.get_level(data, self.get_height() - 1).count_unset()
    }

    fn get_level<'a>(&self, data: &'a [u8], i: usize) -> U64GroupedBitMap<'a> {
        let (start, end) = self.tree_level_offsets[i];
        U64GroupedBitMap::new(&data[start..end])
    }

    fn get_level_mut<'a>(&self, data: &'a mut [u8], i: usize) -> U64GroupedBitMapMut<'a> {
        let (start, end) = self.tree_level_offsets[i];
        U64GroupedBitMapMut::new(&mut data[start..end])
    }

    pub(crate) fn get_num_pages(&self) -> u64 {
        self.num_pages as u64
    }

    fn get_height(&self) -> usize {
        self.tree_level_offsets.len()
    }

    // Recursively update to the root, starting at the given entry in the given height
    // full parameter must be set if all bits in the entry's group of u64 are full
    fn update_to_root(&self, data: &mut [u8], page_number: usize, mut full: bool) {
        if self.get_height() == 1 {
            return;
        }

        let mut parent_height = self.get_height() - 2;
        let mut parent_entry = page_number / 64;
        loop {
            full = if full {
                self.get_level_mut(data, parent_height).set(parent_entry)
            } else {
                self.get_level_mut(data, parent_height).clear(parent_entry);
                false
            };

            if parent_height == 0 {
                break;
            }
            parent_height -= 1;
            parent_entry /= 64;
        }
    }

    pub(crate) fn is_allocated(&self, data: &[u8], page_number: u64) -> bool {
        self.get_level(data, self.get_height() - 1)
            .get(page_number as usize)
    }

    /// data must have been initialized by Self::init_new()
    pub(crate) fn alloc(&self, data: &mut [u8]) -> Result<u64> {
        let entry = self.find_free(data)?;
        self.record_alloc(data, entry as u64);
        Ok(entry)
    }

    /// data must have been initialized by Self::init_new(). Returns the first free id, after (inclusive) of start
    pub(crate) fn find_free(&self, data: &[u8]) -> Result<u64> {
        if let Some(mut entry) = self.get_level(data, 0).first_unset(0, 64) {
            let mut height = 0;

            while height < self.get_height() - 1 {
                height += 1;
                entry *= 64;
                entry = self
                    .get_level(data, height)
                    .first_unset(entry, entry + 64)
                    .unwrap();
            }

            assert!(entry < self.get_num_pages() as usize);
            Ok(entry as u64)
        } else {
            Err(Error::OutOfSpace)
        }
    }

    /// data must have been initialized by Self::init_new()
    pub(crate) fn record_alloc(&self, data: &mut [u8], page_number: u64) {
        assert!(page_number < self.get_num_pages());
        let full = self
            .get_level_mut(data, self.get_height() - 1)
            .set(page_number as usize);
        self.update_to_root(data, page_number as usize, full);
    }

    /// data must have been initialized by Self::init_new()
    pub(crate) fn free(&self, data: &mut [u8], page_number: u64) {
        assert!(page_number < self.get_num_pages());
        self.get_level_mut(data, self.get_height() - 1)
            .clear(page_number as usize);
        self.update_to_root(data, page_number as usize, false);
    }
}

#[cfg(test)]
mod test {
    use crate::tree_store::page_store::page_allocator::PageAllocator;
    use crate::Error;
    use rand::prelude::IteratorRandom;
    use rand::rngs::StdRng;
    use rand::{Rng, SeedableRng};
    use std::collections::HashSet;
    use std::convert::TryInto;

    #[test]
    fn alloc() {
        let num_pages = 2;
        let mut data = vec![0; PageAllocator::required_space(num_pages)];
        let allocator = PageAllocator::init_new(&mut data, num_pages);
        for i in 0..num_pages {
            allocator.free(&mut data, i as u64);
        }
        for i in 0..num_pages {
            assert_eq!(i as u64, allocator.alloc(&mut data).unwrap());
        }
        assert!(matches!(
            allocator.alloc(&mut data).unwrap_err(),
            Error::OutOfSpace
        ));
    }

    #[test]
    fn record_alloc() {
        let mut data = vec![0; PageAllocator::required_space(2)];
        let allocator = PageAllocator::init_new(&mut data, 2);
        allocator.free(&mut data, 0);
        allocator.free(&mut data, 1);
        allocator.record_alloc(&mut data, 0);
        assert_eq!(1, allocator.alloc(&mut data).unwrap());
        assert!(matches!(
            allocator.alloc(&mut data).unwrap_err(),
            Error::OutOfSpace
        ));
    }

    #[test]
    fn free() {
        let mut data = vec![0; PageAllocator::required_space(1)];
        let allocator = PageAllocator::init_new(&mut data, 1);
        allocator.free(&mut data, 0);
        assert_eq!(0, allocator.alloc(&mut data).unwrap());
        assert!(matches!(
            allocator.alloc(&mut data).unwrap_err(),
            Error::OutOfSpace
        ));
        allocator.free(&mut data, 0);
        assert_eq!(0, allocator.alloc(&mut data).unwrap());
    }

    #[test]
    fn reuse_lowest() {
        let num_pages = 65;
        let mut data = vec![0; PageAllocator::required_space(num_pages)];
        let allocator = PageAllocator::init_new(&mut data, num_pages);
        for i in 0..num_pages {
            allocator.free(&mut data, i as u64);
        }
        for i in 0..num_pages {
            assert_eq!(i as u64, allocator.alloc(&mut data).unwrap());
        }
        allocator.free(&mut data, 5);
        allocator.free(&mut data, 15);
        assert_eq!(5, allocator.alloc(&mut data).unwrap());
        assert_eq!(15, allocator.alloc(&mut data).unwrap());
        assert!(matches!(
            allocator.alloc(&mut data).unwrap_err(),
            Error::OutOfSpace
        ));
    }

    #[test]
    fn all_space_used() {
        let num_pages = 65;
        let mut data = vec![0; PageAllocator::required_space(num_pages)];
        let allocator = PageAllocator::init_new(&mut data, num_pages);
        for i in 0..num_pages {
            allocator.free(&mut data, i as u64);
        }
        // Allocate everything
        while allocator.alloc(&mut data).is_ok() {}
        // The last u64 must be used, since the leaf layer is compact
        let l = data.len();
        assert_ne!(
            u64::MAX,
            u64::from_le_bytes(data[(l - 8)..].try_into().unwrap())
        );
    }

    #[test]
    fn find_free() {
        let num_pages = 129;
        let mut data = vec![0; PageAllocator::required_space(num_pages)];
        let allocator = PageAllocator::init_new(&mut data, num_pages);
        assert!(matches!(
            allocator.find_free(&data).unwrap_err(),
            Error::OutOfSpace
        ));
        allocator.free(&mut data, 128);
        assert_eq!(allocator.find_free(&data).unwrap(), 128);
        allocator.free(&mut data, 65);
        assert_eq!(allocator.find_free(&data).unwrap(), 65);
        allocator.free(&mut data, 8);
        assert_eq!(allocator.find_free(&data).unwrap(), 8);
        allocator.free(&mut data, 0);
        assert_eq!(allocator.find_free(&data).unwrap(), 0);
    }

    #[test]
    fn random_pattern() {
        let seed = rand::thread_rng().gen();
        // Print the seed to debug for reproducibility, in case this test fails
        println!("seed={}", seed);
        let mut rng = StdRng::seed_from_u64(seed);

        let num_pages = rng.gen_range(2..10000);
        let mut data = vec![0; PageAllocator::required_space(num_pages)];
        let allocator = PageAllocator::init_new(&mut data, num_pages);
        for i in 0..num_pages {
            allocator.free(&mut data, i as u64);
        }
        let mut allocated = HashSet::new();

        for _ in 0..(num_pages * 2) {
            if rng.gen_bool(0.75) {
                if let Ok(page) = allocator.alloc(&mut data) {
                    allocated.insert(page);
                } else {
                    assert_eq!(allocated.len(), num_pages);
                }
            } else if let Some(to_free) = allocated.iter().choose(&mut rng).cloned() {
                allocator.free(&mut data, to_free);
                allocated.remove(&to_free);
            }
        }

        for _ in allocated.len()..num_pages {
            allocator.alloc(&mut data).unwrap();
        }
        assert!(matches!(
            allocator.alloc(&mut data).unwrap_err(),
            Error::OutOfSpace
        ));

        for i in 0..num_pages {
            allocator.free(&mut data, i as u64);
        }

        for _ in 0..num_pages {
            allocator.alloc(&mut data).unwrap();
        }
        assert!(matches!(
            allocator.alloc(&mut data).unwrap_err(),
            Error::OutOfSpace
        ));
    }
}