# rectree2svg
Build a svg phylogenetic reconciled tree with Rust
Keywords: phylogeny, reconciled trees, phylogenetic trees
Read a recphyloxml file: create a svg representation of the gene trees and species tree with events (loss, duplication, speciation, transfer).
Read a newick or phyloxml file: create a svg representation of the tree.
Currently under development.
# Under development:
- Accepting old recPhyloXML format
- Allow 2/3 reconciliation levels (host/species/gene)
# Instructions:
- cargo build --release
- target/release/rectree2svg -h
# Help:
Read a newick, phyloxml or recPhyloXML file and create a svg.
Format is guessed according to filename (default is newick)
Usage:
target/debug/rectree2svg -f input file [-b][-h][-i][-I][-l factor][-o output file][-p][-s][-v]
-b : open svg in browser
-h : help
-i : display internal gene nodes
-I : display internal species nodes
-l factor: use branch length, using the given factor
-o outputfile : set name of output file
-p : build a phylogram
-s : drawing species tree only
-v : verbose