1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
use crate::error::{ReasonableError, Result};
use crate::reasoner::Reasoner;
use log::{debug, info};
use oxigraph::{
    io::{GraphFormat, GraphParser},
    model::*,
    sparql::{QueryOptions, QueryResults},
    store::memory::MemoryPreparedQuery,
    MemoryStore,
};
use rdf::{node::Node, uri::Uri};
use std::collections::HashMap;
use std::fmt;
use std::fs;
use std::io::Cursor;
use std::string::String;
use std::time::Instant;

macro_rules! uri {
    ($t:expr) => {
        Node::UriNode { uri: Uri::new($t) }
    };
}
macro_rules! bnode {
    ($t:expr) => {
        Node::BlankNode { id: $t }
    };
}
macro_rules! literal {
    ($t:expr, $d:expr, $l:expr) => {
        Node::LiteralNode {
            literal: $t,
            data_type: $d,
            language: $l,
        }
    };
}

#[allow(non_upper_case_globals)]
const qfmt: &str = "PREFIX brick: <https://brickschema.org/schema/1.1/Brick#>
    PREFIX tag: <https://brickschema.org/schema/1.1/BrickTag#>
    PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
    PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
    PREFIX owl: <http://www.w3.org/2002/07/owl#>
    PREFIX qudt: <http://qudt.org/schema/qudt/>
    ";

pub struct ViewRef<'a> {
    // columns: &'a Vec<String>,
    md: &'a ViewMetadata,
}

impl<'a> ViewRef<'a> {
    pub fn columns(&self) -> &'a [String] {
        &self.md.columns
    }
    pub fn name(&self) -> &str {
        &self.md.table_name
    }

    pub fn contents(&self) -> Result<Vec<Vec<Term>>> {
        let res = self.md.query.exec()?;
        let mut rows: Vec<Vec<Term>> = Vec::new();
        if let QueryResults::Solutions(solutions) = res {
            for soln in solutions {
                let vals = soln?;
                let mut row: Vec<Term> = Vec::new();
                for col in self.md.columns.iter() {
                    row.push(vals.get(col.as_str()).unwrap().clone());
                }
                rows.push(row);
            }
        }
        Ok(rows)
    }
    pub fn contents_string(&self) -> Result<Vec<Vec<String>>> {
        let res = self.md.query.exec()?;
        let mut rows: Vec<Vec<String>> = Vec::new();
        if let QueryResults::Solutions(solutions) = res {
            for soln in solutions {
                let vals = soln?;
                let mut row: Vec<String> = Vec::new();
                for col in self.md.columns.iter() {
                    row.push(vals.get(col.as_str()).unwrap().to_string());
                }
                rows.push(row);
            }
        }
        Ok(rows)
    }
}

pub struct ViewMetadata {
    pub query_string: String,
    pub table_name: String,
    query: MemoryPreparedQuery,
    columns: Vec<String>,
}

impl ViewMetadata {
    pub fn contents_string(&self) -> Result<Vec<Vec<String>>> {
        let res = self.query.exec()?;
        let mut rows: Vec<Vec<String>> = Vec::new();
        if let QueryResults::Solutions(solutions) = res {
            for soln in solutions {
                let vals = soln?;
                let mut row: Vec<String> = Vec::new();
                for col in self.columns.iter() {
                    let s = match vals.get(col.as_str()).unwrap() {
                        Term::NamedNode(named) => named.clone().into_string(),
                        Term::BlankNode(bnode) => bnode.clone().into_string(),
                        Term::Literal(lit) => lit.value().to_string(),
                    };
                    row.push(s);
                }
                rows.push(row);
            }
        }
        Ok(rows)
    }
    pub fn name(&self) -> &str {
        &self.table_name
    }
    pub fn columns(&self) -> &[String] {
        &self.columns
    }

    pub fn get_insert_sql(&self) -> String {
        let cols: String = self
            .columns()
            .to_vec()
            .iter()
            .map(|c| c.to_string())
            .collect::<Vec<String>>()
            .join(", ");
        let inps: String = (0..self.columns().len())
            .map(|_| "?".to_string())
            .collect::<Vec<String>>()
            .join(", ");
        format!(
            "INSERT INTO view_{}({}) VALUES ({});",
            self.table_name, cols, inps
        )
    }

    pub fn get_create_tab(&self) -> String {
        let cols: String = self
            .columns()
            .to_vec()
            .iter()
            .map(|c| format!("{} TEXT", c))
            .collect::<Vec<String>>()
            .join(", ");
        format!(
            "CREATE TABLE IF NOT EXISTS view_{}({});",
            self.table_name, cols
        )
    }

    pub fn get_delete_tab(&self) -> String {
        format!("DELETE FROM view_{};", self.table_name)
    }
}

impl fmt::Display for ViewMetadata {
    fn fmt(&self, f: &mut fmt::Formatter<'_>) -> fmt::Result {
        write!(f, "<name: {}, cols {:?}>", self.table_name, self.columns)
    }
}

pub struct Manager {
    reasoner: Reasoner,
    triple_store: MemoryStore,
    views: HashMap<String, ViewMetadata>,
}

impl Manager {
    pub fn new() -> Self {
        Manager {
            reasoner: Reasoner::new(),
            triple_store: MemoryStore::new(),
            views: HashMap::new(),
        }
    }

    pub fn size(&self) -> usize {
        self.triple_store.len()
    }

    pub fn store(&self) -> MemoryStore {
        self.triple_store.clone()
    }

    pub fn load_triples(&mut self, triples: Vec<(String, String, String)>) -> Result<()> {
        let load_triples: Vec<(Node, Node, Node)> = triples
            .into_iter()
            .filter_map(|(s_, p_, o_)| {
                let s: Node = {
                    if let Ok(named) = NamedNode::new(s_.clone()) {
                        uri!(named.into_string())
                    } else if let Ok(bnode) = BlankNode::new(s_) {
                        bnode!(bnode.into_string())
                    } else {
                        return None;
                    }
                };

                let p: Node = uri!(p_);

                let o: Node = {
                    if let Ok(named) = NamedNode::new(o_.clone()) {
                        uri!(named.into_string())
                    } else if let Ok(bnode) = BlankNode::new(o_.clone()) {
                        bnode!(bnode.into_string())
                    } else {
                        literal!(o_, None, None)
                    }
                };

                Some((s, p, o))
            })
            .collect();
        self.reasoner.load_triples(load_triples);
        self.refresh();
        Ok(())
    }

    pub fn load_file(&mut self, filename: &str) -> Result<()> {
        self.reasoner.load_triples(parse_file(filename)?);
        self.refresh();
        Ok(())
    }

    fn refresh(&mut self) {
        let refresh_start = Instant::now();
        // update the reasoner
        self.reasoner.reason();

        // add reasoned triples to an in-memory store
        for t in self.reasoner.view_output().iter() {
            let s = match &t.0 {
                Node::UriNode { uri } => {
                    NamedOrBlankNode::NamedNode(NamedNode::new_unchecked(uri.to_string()))
                }
                Node::BlankNode { id } => {
                    NamedOrBlankNode::BlankNode(BlankNode::new_unchecked(id.to_string()))
                }
                _ => panic!("no subject literals"),
            };
            let p = match &t.1 {
                Node::UriNode { uri } => NamedNode::new_unchecked(uri.to_string()),
                _ => panic!("no must be named node"),
            };
            let o = match &t.2 {
                Node::UriNode { uri } => Term::NamedNode(NamedNode::new_unchecked(uri.to_string())),
                Node::BlankNode { id } => Term::BlankNode(BlankNode::new_unchecked(id.to_string())),
                Node::LiteralNode {
                    literal,
                    data_type: _,
                    language: _,
                } => Term::Literal(Literal::new_simple_literal(literal)),
            };
            self.triple_store
                .insert(Quad::new(s, p, o, GraphName::DefaultGraph));
        }
        info!("now have {} triples", self.triple_store.len());
        info!(
            "refresh completed in {:.02}sec",
            refresh_start.elapsed().as_secs_f64()
        );
    }

    /// Adds the provided triples to the reasoner and re-executes the reasoner
    pub fn add_triples(&mut self, triples: Vec<(Node, Node, Node)>) {
        // add new triples to reasoner
        self.reasoner.load_triples(triples);
        self.refresh();
    }

    /// Adds a view with the given name, defined by the provided SPARQL query
    pub fn add_view(&mut self, name: String, query: &str) -> Result<ViewRef> {
        // execute query to get the schema?
        let sparql = format!("{}{}", qfmt, query);

        let q = self
            .triple_store
            .prepare_query(&sparql, QueryOptions::default())?;

        debug!("query: {}", sparql);
        let res = q.exec()?;
        if let QueryResults::Solutions(solutions) = res {
            let name_key = name.clone();
            let view_key = name.clone();
            let md = ViewMetadata {
                query: q,
                query_string: query.to_string(),
                table_name: name,
                columns: solutions
                    .variables()
                    .to_vec()
                    .into_iter()
                    .map(|t| t.into_string())
                    .collect(),
            };
            self.views.insert(name_key, md);

            return Ok(ViewRef {
                md: self.views.get(&view_key).unwrap(),
            });
        };
        Err(ReasonableError::ManagerError("no solutions".to_string()))
    }

    pub fn add_view2(&self, name: String, query: &str) -> Result<ViewMetadata> {
        let sparql = format!("{}{}", qfmt, query);

        let q = self
            .triple_store
            .prepare_query(&sparql, QueryOptions::default())?;

        debug!("query: {}", sparql);
        let res = q.exec()?;
        if let QueryResults::Solutions(solutions) = res {
            return Ok(ViewMetadata {
                query: q,
                query_string: query.to_string(),
                table_name: name,
                columns: solutions
                    .variables()
                    .to_vec()
                    .into_iter()
                    .map(|t| t.into_string())
                    .collect(),
            });
        }
        Err(ReasonableError::ManagerError("no solutions".to_string()))
    }

    pub fn get_view(&self, view: &ViewRef) -> Result<Vec<Vec<Term>>> {
        let res = view.md.query.exec()?;
        let mut rows: Vec<Vec<Term>> = Vec::new();
        if let QueryResults::Solutions(solutions) = res {
            for soln in solutions {
                let vals = soln?;
                let mut row: Vec<Term> = Vec::new();
                for col in view.md.columns.iter() {
                    row.push(vals.get(col.as_str()).unwrap().clone());
                }
                rows.push(row);
            }
        }
        Ok(rows)
    }
}

pub fn parse_file(filename: &str) -> Result<Vec<(Node, Node, Node)>> {
    let gfmt: GraphFormat = if filename.ends_with(".ttl") {
        GraphFormat::Turtle
    } else if filename.ends_with(".n3") || filename.ends_with(".ntriples") {
        GraphFormat::NTriples
    } else {
        GraphFormat::RdfXml
    };
    let data = fs::read_to_string(filename)?;
    debug!("format: {:?} for {}", gfmt, filename);
    let parser = GraphParser::from_format(gfmt);
    let triples: Vec<std::result::Result<Triple, std::io::Error>> =
        parser.read_triples(Cursor::new(data))?.collect(); //.collect::<Result<Triple>>();
    Ok(triples
        .into_iter()
        .filter_map(|tres| match tres {
            Err(_) => None,
            Ok(t) => {
                let s = match t.subject {
                    NamedOrBlankNode::NamedNode(node) => uri!(node.into_string()),
                    NamedOrBlankNode::BlankNode(id) => bnode!(id.into_string()),
                };
                let p = uri!(t.predicate.into_string());
                let o = match t.object {
                    Term::NamedNode(node) => uri!(node.into_string()),
                    Term::BlankNode(id) => bnode!(id.into_string()),
                    Term::Literal(lit) => literal!(
                        lit.value().to_string(),
                        Some(Uri::new(lit.datatype().to_string())),
                        match lit.language() {
                            Some(l) => Some(l.to_string()),
                            None => None,
                        }
                    ),
                };
                Some((s, p, o))
            }
        })
        .collect())
}