name: Python ReadCon
on:
push:
branches: [main]
paths:
- 'src/**'
- 'tests/python/**'
- 'resources/test/**'
- 'docs/orgmode/tutorial.org'
- 'docs/orgmode/chemfiles-notebook.org'
- 'docs/notebooks/**'
- 'scripts/run-tutorial-core.sh'
- 'scripts/run-chemfiles-notebook.sh'
- 'Cargo.toml'
- 'Cargo.lock'
- 'pyproject.toml'
- '.github/workflows/ci_python.yml'
pull_request:
branches: [main]
paths:
- 'src/**'
- 'tests/python/**'
- 'resources/test/**'
- 'docs/orgmode/tutorial.org'
- 'docs/orgmode/chemfiles-notebook.org'
- 'docs/notebooks/**'
- 'scripts/run-tutorial-core.sh'
- 'scripts/run-chemfiles-notebook.sh'
- 'Cargo.toml'
- 'Cargo.lock'
- 'pyproject.toml'
- '.github/workflows/ci_python.yml'
workflow_dispatch:
concurrency:
group: python-tests-${{ github.ref }}
cancel-in-progress: ${{ github.ref != 'refs/heads/main' }}
jobs:
pytest:
name: pytest (${{ matrix.features }})
runs-on: ubuntu-22.04
strategy:
fail-fast: false
matrix:
include:
- features: python
name: lean
- features: python,chemfiles-from-sources
name: chemfiles
steps:
- uses: actions/checkout@v6
- uses: dtolnay/rust-toolchain@stable
- uses: actions/setup-python@v5
with:
python-version: '3.12'
- name: Install maturin, pytest, emacs (org-babel)
run: |
python -m venv .venv
echo "VIRTUAL_ENV=$PWD/.venv" >> "$GITHUB_ENV"
echo "$PWD/.venv/bin" >> "$GITHUB_PATH"
.venv/bin/python -m pip install -U pip
.venv/bin/python -m pip install maturin pytest numpy
sudo apt-get update
sudo apt-get install -y --no-install-recommends emacs-nox
- name: maturin develop
env:
RUSTFLAGS: "-C link-arg=-fuse-ld=bfd"
run: |
maturin develop --features '${{ matrix.features }}'
- name: Org Babel One Good Tutorial
run: |
scripts/run-tutorial-core.sh
- name: Org Babel chemfiles notebook
if: matrix.name == 'chemfiles'
run: |
scripts/run-chemfiles-notebook.sh
- name: pytest tests/python
run: |
python -m pytest tests/python/ -q --tb=short