rasusa 3.0.0

Randomly subsample reads or alignments
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# THIS FILE IS AUTOMATICALLY GENERATED BY CARGO
#
# When uploading crates to the registry Cargo will automatically
# "normalize" Cargo.toml files for maximal compatibility
# with all versions of Cargo and also rewrite `path` dependencies
# to registry (e.g., crates.io) dependencies.
#
# If you are reading this file be aware that the original Cargo.toml
# will likely look very different (and much more reasonable).
# See Cargo.toml.orig for the original contents.

[package]
edition = "2018"
name = "rasusa"
version = "3.0.0"
authors = ["Michael Hall <michael@mbh.sh>"]
build = false
exclude = ["tests/cases/*"]
autolib = false
autobins = false
autoexamples = false
autotests = false
autobenches = false
description = "Randomly subsample reads or alignments"
homepage = "https://github.com/mbhall88/rasusa"
readme = "README.md"
keywords = [
    "bioinformatics",
    "subsampling",
    "fastq",
    "alignment",
    "coverage",
]
categories = [
    "science",
    "command-line-utilities",
]
license-file = "LICENSE"
repository = "https://github.com/mbhall88/rasusa"

[package.metadata.cargo-shear]
ignored = ["noodles-bgzf"]

[badges.maintenance]
status = "actively-developed"

[[bin]]
name = "rasusa"
path = "src/main.rs"

[[test]]
name = "main"
path = "tests/main.rs"

[[test]]
name = "reproducibility"
path = "tests/reproducibility.rs"

[dependencies.anyhow]
version = "1.0"

[dependencies.clap]
version = "4.5.59"
features = ["derive"]

[dependencies.env_logger]
version = "0.11.8"

[dependencies.log]
version = "0.4"

[dependencies.needletail]
version = "0.5.1"
features = ["compression"]

[dependencies.niffler]
version = "2.5"

[dependencies.noodles]
version = "0.104.0"
features = [
    "bam",
    "core",
    "sam",
]

[dependencies.noodles-bgzf]
version = "0.45.0"
features = ["libdeflate"]

[dependencies.noodles-util]
version = "0.73.0"
features = ["alignment"]

[dependencies.rand]
version = "0.10.0"

[dependencies.rand_pcg]
version = "0.10.1"

[dependencies.regex]
version = "1.12.3"

[dependencies.thiserror]
version = "2.0"

[dev-dependencies.assert_cmd]
version = "2.0.17"

[dev-dependencies.predicates]
version = "3.1.3"

[dev-dependencies.tempfile]
version = "3.24.0"

[profile.profiling]
debug = 2
inherits = "release"
strip = false

[profile.release]
lto = true
debug = 0
strip = true