quantrs2-sim 0.1.3

Quantum circuit simulators for the QuantRS2 framework
Documentation
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//! # QuantumChemistrySimulator - crud Methods
//!
//! This module contains method implementations for `QuantumChemistrySimulator`.
//!
//! 🤖 Generated with [SplitRS](https://github.com/cool-japan/splitrs)

use crate::circuit_interfaces::{InterfaceCircuit, InterfaceGate, InterfaceGateType};
use crate::error::{Result, SimulatorError};
use crate::fermionic_simulation::{FermionicHamiltonian, FermionicOperator, FermionicString};
use crate::pauli::{PauliOperator, PauliOperatorSum, PauliString};
use crate::scirs2_integration::SciRS2Backend;
use crate::statevector::StateVectorSimulator;
use scirs2_core::ndarray::{Array1, Array2, Array4};
use scirs2_core::random::prelude::*;
use scirs2_core::Complex64;
use std::f64::consts::PI;

use super::types::{
    ChemistryAnsatz, ChemistryStats, ElectronicStructureConfig, ElectronicStructureResult,
    FermionMapper, HartreeFockResult, MolecularHamiltonian, Molecule, VQEOptimizer,
};

use super::quantumchemistrysimulator_type::QuantumChemistrySimulator;

impl QuantumChemistrySimulator {
    /// Create new quantum chemistry simulator
    pub fn new(config: ElectronicStructureConfig) -> Result<Self> {
        let backend = if config.enable_second_quantization_optimization {
            Some(SciRS2Backend::new())
        } else {
            None
        };
        Ok(Self {
            config: config.clone(),
            backend,
            molecule: None,
            hamiltonian: None,
            hartree_fock: None,
            fermion_mapper: FermionMapper::new(config.fermion_mapping, 0),
            vqe_optimizer: VQEOptimizer::new(config.vqe_config.optimizer),
            stats: ChemistryStats::default(),
        })
    }
    /// Construct molecular Hamiltonian from atomic structure
    pub(super) fn construct_molecular_hamiltonian(&mut self, molecule: &Molecule) -> Result<()> {
        let num_atoms = molecule.atomic_numbers.len();
        let num_orbitals = if molecule.basis_set == "STO-3G" {
            num_atoms
        } else {
            2 * num_atoms
        };
        let num_electrons =
            molecule.atomic_numbers.iter().sum::<u32>() as usize - molecule.charge as usize;
        let one_electron_integrals = self.compute_one_electron_integrals(molecule, num_orbitals)?;
        let two_electron_integrals = self.compute_two_electron_integrals(molecule, num_orbitals)?;
        let nuclear_repulsion = self.compute_nuclear_repulsion(molecule)?;
        let fermionic_hamiltonian = self.create_fermionic_hamiltonian(
            &one_electron_integrals,
            &two_electron_integrals,
            num_orbitals,
        )?;
        self.fermion_mapper = FermionMapper::new(self.fermion_mapper.method, num_orbitals * 2);
        let pauli_hamiltonian = if self.config.enable_second_quantization_optimization {
            Some(self.map_to_pauli_operators(&fermionic_hamiltonian, num_orbitals)?)
        } else {
            None
        };
        self.hamiltonian = Some(MolecularHamiltonian {
            one_electron_integrals,
            two_electron_integrals,
            nuclear_repulsion,
            num_orbitals,
            num_electrons,
            fermionic_hamiltonian,
            pauli_hamiltonian,
        });
        Ok(())
    }
    /// Create fermionic Hamiltonian from molecular integrals
    pub(super) fn create_fermionic_hamiltonian(
        &self,
        one_electron: &Array2<f64>,
        two_electron: &Array4<f64>,
        num_orbitals: usize,
    ) -> Result<FermionicHamiltonian> {
        let mut terms = Vec::new();
        for i in 0..num_orbitals {
            for j in 0..num_orbitals {
                if one_electron[[i, j]].abs() > 1e-12 {
                    let alpha_term = FermionicString {
                        operators: vec![
                            FermionicOperator::Creation(2 * i),
                            FermionicOperator::Annihilation(2 * j),
                        ],
                        coefficient: Complex64::new(one_electron[[i, j]], 0.0),
                        num_modes: 2 * num_orbitals,
                    };
                    terms.push(alpha_term);
                    let beta_term = FermionicString {
                        operators: vec![
                            FermionicOperator::Creation(2 * i + 1),
                            FermionicOperator::Annihilation(2 * j + 1),
                        ],
                        coefficient: Complex64::new(one_electron[[i, j]], 0.0),
                        num_modes: 2 * num_orbitals,
                    };
                    terms.push(beta_term);
                }
            }
        }
        for i in 0..num_orbitals {
            for j in 0..num_orbitals {
                for k in 0..num_orbitals {
                    for l in 0..num_orbitals {
                        if two_electron[[i, j, k, l]].abs() > 1e-12 {
                            let coefficient = Complex64::new(0.5 * two_electron[[i, j, k, l]], 0.0);
                            if i != j && k != l {
                                let aa_term = FermionicString {
                                    operators: vec![
                                        FermionicOperator::Creation(2 * i),
                                        FermionicOperator::Creation(2 * j),
                                        FermionicOperator::Annihilation(2 * l),
                                        FermionicOperator::Annihilation(2 * k),
                                    ],
                                    coefficient,
                                    num_modes: 2 * num_orbitals,
                                };
                                terms.push(aa_term);
                            }
                            if i != j && k != l {
                                let bb_term = FermionicString {
                                    operators: vec![
                                        FermionicOperator::Creation(2 * i + 1),
                                        FermionicOperator::Creation(2 * j + 1),
                                        FermionicOperator::Annihilation(2 * l + 1),
                                        FermionicOperator::Annihilation(2 * k + 1),
                                    ],
                                    coefficient,
                                    num_modes: 2 * num_orbitals,
                                };
                                terms.push(bb_term);
                            }
                            let ab_term = FermionicString {
                                operators: vec![
                                    FermionicOperator::Creation(2 * i),
                                    FermionicOperator::Creation(2 * j + 1),
                                    FermionicOperator::Annihilation(2 * l + 1),
                                    FermionicOperator::Annihilation(2 * k),
                                ],
                                coefficient,
                                num_modes: 2 * num_orbitals,
                            };
                            terms.push(ab_term);
                            let ba_term = FermionicString {
                                operators: vec![
                                    FermionicOperator::Creation(2 * i + 1),
                                    FermionicOperator::Creation(2 * j),
                                    FermionicOperator::Annihilation(2 * l),
                                    FermionicOperator::Annihilation(2 * k + 1),
                                ],
                                coefficient,
                                num_modes: 2 * num_orbitals,
                            };
                            terms.push(ba_term);
                        }
                    }
                }
            }
        }
        Ok(FermionicHamiltonian {
            terms,
            num_modes: 2 * num_orbitals,
            is_hermitian: true,
        })
    }
    /// Map fermionic Hamiltonian to Pauli operators
    pub(super) fn map_to_pauli_operators(
        &self,
        fermionic_ham: &FermionicHamiltonian,
        num_orbitals: usize,
    ) -> Result<PauliOperatorSum> {
        let mut pauli_terms = Vec::new();
        for fermionic_term in &fermionic_ham.terms {
            let pauli_string = self.fermion_mapper.map_fermionic_string(fermionic_term)?;
            pauli_terms.push(pauli_string);
        }
        let num_qubits = num_orbitals * 2;
        let mut pauli_sum = PauliOperatorSum::new(num_qubits);
        for term in pauli_terms {
            pauli_sum.add_term(term)?;
        }
        Ok(pauli_sum)
    }
    /// Diagonalize Fock matrix to get molecular orbitals
    pub(super) fn diagonalize_fock_matrix(
        &self,
        fock: &Array2<f64>,
    ) -> Result<(Array1<f64>, Array2<f64>)> {
        if let Some(ref _backend) = self.backend {
            use crate::scirs2_integration::{Matrix, MemoryPool, LAPACK};
            let complex_fock: Array2<Complex64> = fock.mapv(|x| Complex64::new(x, 0.0));
            let pool = MemoryPool::new();
            let scirs2_matrix = Matrix::from_array2(&complex_fock.view(), &pool).map_err(|e| {
                SimulatorError::ComputationError(format!("Failed to create SciRS2 matrix: {e}"))
            })?;
            let eig_result = LAPACK::eig(&scirs2_matrix).map_err(|e| {
                SimulatorError::ComputationError(format!("Eigenvalue decomposition failed: {e}"))
            })?;
            let eigenvalues_complex = eig_result.to_array1().map_err(|e| {
                SimulatorError::ComputationError(format!("Failed to extract eigenvalues: {e}"))
            })?;
            let eigenvalues: Array1<f64> = eigenvalues_complex.mapv(|c| c.re);
            let eigenvectors = {
                #[cfg(feature = "advanced_math")]
                {
                    let eigenvectors_complex_2d = eig_result.eigenvectors();
                    eigenvectors_complex_2d.mapv(|c| c.re)
                }
                #[cfg(not(feature = "advanced_math"))]
                {
                    Array2::eye(fock.nrows())
                }
            };
            Ok((eigenvalues, eigenvectors))
        } else {
            let n = fock.nrows();
            let mut eigenvalues = Array1::zeros(n);
            let mut eigenvectors = Array2::eye(n);
            for i in 0..n {
                eigenvalues[i] = fock[[i, i]];
                let mut v = Array1::zeros(n);
                v[i] = 1.0;
                for _ in 0..10 {
                    let new_v = fock.dot(&v);
                    let norm = new_v.iter().map(|x| x * x).sum::<f64>().sqrt();
                    if norm > 1e-10 {
                        v = new_v / norm;
                        eigenvalues[i] = v.dot(&fock.dot(&v));
                        for j in 0..n {
                            eigenvectors[[j, i]] = v[j];
                        }
                    }
                }
            }
            Ok((eigenvalues, eigenvectors))
        }
    }
    /// Prepare Hartree-Fock initial state
    pub(super) fn prepare_hartree_fock_state(
        &self,
        hf_result: &HartreeFockResult,
    ) -> Result<Array1<Complex64>> {
        let num_qubits = 2 * hf_result.molecular_orbitals.num_orbitals;
        let mut state = Array1::zeros(1 << num_qubits);
        let mut configuration = 0usize;
        for i in 0..hf_result.molecular_orbitals.num_orbitals {
            if hf_result.molecular_orbitals.occupations[i] >= 1.0 {
                configuration |= 1 << (2 * i);
            }
            if hf_result.molecular_orbitals.occupations[i] >= 2.0 {
                configuration |= 1 << (2 * i + 1);
            }
        }
        state[configuration] = Complex64::new(1.0, 0.0);
        Ok(state)
    }
    /// Create ansatz circuit for VQE
    pub(super) fn create_ansatz_circuit(
        &self,
        initial_state: &Array1<Complex64>,
    ) -> Result<InterfaceCircuit> {
        let num_qubits = (initial_state.len() as f64).log2() as usize;
        let mut circuit = InterfaceCircuit::new(num_qubits, 0);
        match self.config.vqe_config.ansatz {
            ChemistryAnsatz::UCCSD => {
                self.create_uccsd_ansatz(&mut circuit)?;
            }
            ChemistryAnsatz::HardwareEfficient => {
                self.create_hardware_efficient_ansatz(&mut circuit)?;
            }
            _ => {
                self.create_hardware_efficient_ansatz(&mut circuit)?;
            }
        }
        Ok(circuit)
    }
    /// Create UCCSD ansatz
    pub(super) fn create_uccsd_ansatz(&self, circuit: &mut InterfaceCircuit) -> Result<()> {
        let num_qubits = circuit.num_qubits;
        for i in 0..num_qubits {
            for j in i + 1..num_qubits {
                let param_idx = self.vqe_optimizer.parameters.len();
                let theta = if param_idx < self.vqe_optimizer.parameters.len() {
                    self.vqe_optimizer.parameters[param_idx]
                } else {
                    (thread_rng().random::<f64>() - 0.5) * 0.1
                };
                circuit.add_gate(InterfaceGate::new(InterfaceGateType::RY(theta), vec![i]));
                circuit.add_gate(InterfaceGate::new(InterfaceGateType::CNOT, vec![i, j]));
                circuit.add_gate(InterfaceGate::new(InterfaceGateType::RY(-theta), vec![j]));
                circuit.add_gate(InterfaceGate::new(InterfaceGateType::CNOT, vec![i, j]));
            }
        }
        for i in 0..num_qubits {
            for j in i + 1..num_qubits {
                for k in j + 1..num_qubits {
                    for l in k + 1..num_qubits {
                        circuit.add_gate(InterfaceGate::new(InterfaceGateType::RY(0.0), vec![i]));
                        circuit.add_gate(InterfaceGate::new(InterfaceGateType::CNOT, vec![i, j]));
                        circuit.add_gate(InterfaceGate::new(InterfaceGateType::CNOT, vec![j, k]));
                        circuit.add_gate(InterfaceGate::new(InterfaceGateType::CNOT, vec![k, l]));
                        circuit.add_gate(InterfaceGate::new(InterfaceGateType::RY(0.0), vec![l]));
                        circuit.add_gate(InterfaceGate::new(InterfaceGateType::CNOT, vec![k, l]));
                        circuit.add_gate(InterfaceGate::new(InterfaceGateType::CNOT, vec![j, k]));
                        circuit.add_gate(InterfaceGate::new(InterfaceGateType::CNOT, vec![i, j]));
                    }
                }
            }
        }
        Ok(())
    }
    /// Create hardware efficient ansatz
    pub(super) fn create_hardware_efficient_ansatz(
        &self,
        circuit: &mut InterfaceCircuit,
    ) -> Result<()> {
        let num_qubits = circuit.num_qubits;
        let num_layers = 3;
        for layer in 0..num_layers {
            for qubit in 0..num_qubits {
                circuit.add_gate(InterfaceGate::new(InterfaceGateType::RY(0.0), vec![qubit]));
                circuit.add_gate(InterfaceGate::new(InterfaceGateType::RZ(0.0), vec![qubit]));
            }
            for qubit in 0..num_qubits - 1 {
                circuit.add_gate(InterfaceGate::new(
                    InterfaceGateType::CNOT,
                    vec![qubit, qubit + 1],
                ));
            }
            if layer % 2 == 1 {
                for qubit in 1..num_qubits - 1 {
                    circuit.add_gate(InterfaceGate::new(
                        InterfaceGateType::CNOT,
                        vec![qubit, qubit + 1],
                    ));
                }
            }
        }
        Ok(())
    }
    /// Apply parameters to ansatz circuit
    pub(super) fn apply_ansatz_parameters(
        &self,
        template: &InterfaceCircuit,
        parameters: &Array1<f64>,
    ) -> Result<InterfaceCircuit> {
        let mut circuit = InterfaceCircuit::new(template.num_qubits, 0);
        let mut param_index = 0;
        for gate in &template.gates {
            let new_gate = match gate.gate_type {
                InterfaceGateType::RX(_) => {
                    let param = parameters[param_index];
                    param_index += 1;
                    InterfaceGate::new(InterfaceGateType::RX(param), gate.qubits.clone())
                }
                InterfaceGateType::RY(_) => {
                    let param = parameters[param_index];
                    param_index += 1;
                    InterfaceGate::new(InterfaceGateType::RY(param), gate.qubits.clone())
                }
                InterfaceGateType::RZ(_) => {
                    let param = parameters[param_index];
                    param_index += 1;
                    InterfaceGate::new(InterfaceGateType::RZ(param), gate.qubits.clone())
                }
                _ => gate.clone(),
            };
            circuit.add_gate(new_gate);
        }
        Ok(circuit)
    }
    /// Get final state from circuit simulation
    pub(super) fn get_circuit_final_state(
        &self,
        circuit: &InterfaceCircuit,
    ) -> Result<Array1<Complex64>> {
        let mut simulator = StateVectorSimulator::new();
        simulator.initialize_state(circuit.num_qubits)?;
        simulator.apply_interface_circuit(circuit)?;
        Ok(Array1::from_vec(simulator.get_state()))
    }
    /// Placeholder implementations for other methods
    pub(super) fn run_hartree_fock_only(&self) -> Result<ElectronicStructureResult> {
        let hf_result = self.hartree_fock.as_ref().ok_or_else(|| {
            SimulatorError::InvalidConfiguration("Hartree-Fock result not available".to_string())
        })?;
        Ok(ElectronicStructureResult {
            ground_state_energy: hf_result.scf_energy,
            molecular_orbitals: hf_result.molecular_orbitals.clone(),
            density_matrix: hf_result.density_matrix.clone(),
            dipole_moment: self.calculate_dipole_moment(&hf_result.density_matrix),
            converged: hf_result.converged,
            iterations: hf_result.scf_iterations,
            quantum_state: Array1::zeros(1),
            vqe_history: Vec::new(),
            stats: self.stats.clone(),
        })
    }
    pub(super) fn run_quantum_phase_estimation(&mut self) -> Result<ElectronicStructureResult> {
        if let (Some(hamiltonian), Some(hf)) = (&self.hamiltonian, &self.hartree_fock) {
            let num_qubits = hamiltonian.num_orbitals * 2;
            let ancilla_qubits = 8;
            let mut qpe_circuit = InterfaceCircuit::new(num_qubits + ancilla_qubits, 0);
            for i in 0..ancilla_qubits {
                qpe_circuit.add_gate(InterfaceGate::new(InterfaceGateType::Hadamard, vec![i]));
            }
            self.prepare_qpe_hartree_fock_state(&mut qpe_circuit, ancilla_qubits)?;
            for i in 0..ancilla_qubits {
                let time_factor = 2.0_f64.powi(i as i32);
                self.apply_controlled_hamiltonian_evolution(&mut qpe_circuit, i, time_factor)?;
            }
            self.apply_inverse_qft(&mut qpe_circuit, 0, ancilla_qubits)?;
            let final_state = self.get_circuit_final_state(&qpe_circuit)?;
            let energy_estimate =
                self.extract_energy_from_qpe_state(&final_state, ancilla_qubits)?;
            Ok(ElectronicStructureResult {
                ground_state_energy: energy_estimate,
                molecular_orbitals: hf.molecular_orbitals.clone(),
                density_matrix: hf.density_matrix.clone(),
                dipole_moment: self
                    .fermion_mapper
                    .calculate_dipole_moment(&hf.density_matrix)?,
                converged: true,
                iterations: 1,
                quantum_state: final_state,
                vqe_history: Vec::new(),
                stats: self.stats.clone(),
            })
        } else {
            self.run_vqe()
        }
    }
    /// Prepare Hartree-Fock state in the quantum circuit for QPE
    pub(super) fn prepare_qpe_hartree_fock_state(
        &self,
        circuit: &mut InterfaceCircuit,
        offset: usize,
    ) -> Result<()> {
        if let Some(hf) = &self.hartree_fock {
            let num_electrons = if let Some(molecule) = &self.molecule {
                molecule.atomic_numbers.iter().sum::<u32>() as usize - molecule.charge as usize
            } else {
                2
            };
            let num_orbitals = hf.molecular_orbitals.num_orbitals;
            for i in 0..num_electrons.min(num_orbitals) {
                circuit.add_gate(InterfaceGate::new(
                    InterfaceGateType::PauliX,
                    vec![offset + i],
                ));
            }
        }
        Ok(())
    }
    /// Apply controlled Hamiltonian evolution for QPE
    pub(super) fn apply_controlled_hamiltonian_evolution(
        &self,
        circuit: &mut InterfaceCircuit,
        control: usize,
        time: f64,
    ) -> Result<()> {
        if let Some(hamiltonian) = &self.hamiltonian {
            for i in 0..hamiltonian.num_orbitals {
                let angle = time * hamiltonian.one_electron_integrals[[i, i]];
                circuit.add_gate(InterfaceGate::new(
                    InterfaceGateType::CRZ(angle),
                    vec![control, circuit.num_qubits - hamiltonian.num_orbitals + i],
                ));
            }
        }
        Ok(())
    }
    /// Apply inverse quantum Fourier transform
    pub(super) fn apply_inverse_qft(
        &self,
        circuit: &mut InterfaceCircuit,
        start: usize,
        num_qubits: usize,
    ) -> Result<()> {
        for i in 0..num_qubits {
            let qubit = start + i;
            for j in (0..i).rev() {
                let control = start + j;
                let angle = -PI / 2.0_f64.powi((i - j) as i32);
                circuit.add_gate(InterfaceGate::new(
                    InterfaceGateType::CRZ(angle),
                    vec![control, qubit],
                ));
            }
            circuit.add_gate(InterfaceGate::new(InterfaceGateType::Hadamard, vec![qubit]));
        }
        Ok(())
    }
}