qslib 0.15.0

QSlib QuantStudio qPCR machine library
Documentation 
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# SPDX-FileCopyrightText: 2021 - 2023 Constantine Evans <qslib@mb.costi.net>
#
# SPDX-License-Identifier: EUPL-1.2

[build-system]
requires = ["maturin>=1.0,<2.0"]
build-backend = "maturin"

[tool.maturin]
python-source = "python"
module-name = "qslib._qslib"
bindings = "pyo3"
features = ["python"]
exclude = ["tiff-collection.eds"]

[project]
name = "qslib"
requires-python = ">=3.10"
description = "Library for communicating with and using the QuantStudio qPCR machine, intended for non-qPCR uses."
license = { text = "EUPL-1.2" }
readme = "README.md"
authors = [{ name = "Constantine Evans", email = "const@costi.net" }]
classifiers = [
    "Development Status :: 4 - Beta",
    "Programming Language :: Python",
    "Intended Audience :: Science/Research",
    "License :: OSI Approved :: European Union Public Licence 1.2 (EUPL 1.2)",
    "Natural Language :: English",
    "Topic :: Scientific/Engineering",
    "Topic :: Scientific/Engineering :: Chemistry",
    "Topic :: Scientific/Engineering :: Physics",
    "Typing :: Typed",
    "Programming Language :: Python :: 3.10",
    "Programming Language :: Python :: 3.11",
    "Programming Language :: Python :: 3.12",
    "Programming Language :: Python :: 3.13",
    "Programming Language :: Python :: 3.14",
    "Framework :: Matplotlib",
    "Framework :: Jupyter",
]

dynamic = ["version"]

dependencies = [
    "pandas >= 2",
    "numpy >= 1",
    "tabulate >= 0.9",
    "typeguard >= 2, < 5",
    "nest_asyncio >= 1.5",
    "click >=8.0,<9.0",
    "click-aliases",
    "typing-extensions >= 4",
    "toml",
    "pint",
    "attrs",
    "matplotlib",
    "markdown",
    "dacite",
    "polars ~= 1.20",
    "pyarrow"
]

[project.optional-dependencies]
monitor = [
    "aiohttp~=3.9.0b0; python_version >= '3.12'",
    "matrix-nio",
    "influxdb_client",
    "lxml"]
altair = [
    "vegafusion",
    "altair",
    "vl-convert-python",
]

[project.urls]
homepage = "https://github.com/cgevans/qslib/"
documentation = "https://qslib.readthedocs.org/"
source = "https://github.com/cgevans/qslib/"
changelog = "https://github.com/cgevans/qslib/blob/main/CHANGELOG.md"
tracker = "https://github.com/cgevans/qslib/issues"
download = "https://github.com/cgevans/qslib/releases"

[project.scripts]
qs-monitor = "qslib.monitor_cli:run"
qslib = "qslib.cli:cli"

[dependency-groups]
dev = [
    "pytest>=8.4.2",
    "pytest-cov>=6.2.1",
    "setuptools",
    "pytest-asyncio",
    "hypothesis",
    "qslib[monitor]",
    "altair>=6.0.0",
    "maturin>=1.12.6",
    "mypy>=1.19.1",
]
docs = [
    "myst_parser",
    "influxdb_client",
    "lxml",
    "sphinx-click",
    "sphinx-autodoc-typehints",
    "sphinx >= 2.4",
    "qslib[monitor]"
]

[tool.pytest.ini_options]
addopts = "--verbose"
norecursedirs = ["dist", "build", ".tox"]
testpaths = ["tests"]


[tool.mypy]
python_version = "3.10"
# warn_return_any = true
warn_unused_configs = true
ignore_missing_imports = true

[tool.ruff]
line-length = 120

[tool.hatch.envs.hatch-test]
skip-install = false
dependencies = [
    "pytest>=8.4.2",
    "pytest-cov>=6.2.1",
    "setuptools",
    "pytest-asyncio",
    "hypothesis",
]
pre-install-commands=["maturin develop --uv"]

[[tool.hatch.envs.hatch-test.matrix]]
python = ["3.12", "3.13"]


#[tool.hatch.envs.default.scripts]
#test = "pytest {args:tests}"
#test-cov = "pytest --cov qslib --cov-report term-missing {args:tests}"
#test-cov-html = "pytest --cov qslib --cov-report html {args:tests}"