proseg 3.2.0

Probabilistic cell segmentation for in situ spatial transcriptomics
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# THIS FILE IS AUTOMATICALLY GENERATED BY CARGO
#
# When uploading crates to the registry Cargo will automatically
# "normalize" Cargo.toml files for maximal compatibility
# with all versions of Cargo and also rewrite `path` dependencies
# to registry (e.g., crates.io) dependencies.
#
# If you are reading this file be aware that the original Cargo.toml
# will likely look very different (and much more reasonable).
# See Cargo.toml.orig for the original contents.

[package]
edition = "2024"
rust-version = "1.88.0"
name = "proseg"
version = "3.2.0"
authors = ["Daniel C. Jones <djones3@fredhutch.org>"]
build = false
autolib = false
autobins = false
autoexamples = false
autotests = false
autobenches = false
description = "Probabilistic cell segmentation for in situ spatial transcriptomics"
readme = "README.md"
license-file = "LICENSE.md"
repository = "https://github.com/dcjones/proseg"

[features]
dhat-heap = []

[[bin]]
name = "proseg"
path = "src/main.rs"

[[bin]]
name = "proseg-to-baysor"
path = "src/to_baysor.rs"

[dependencies.ahash]
version = "0.8.11"

[dependencies.arrayvec]
version = "0.7.6"

[dependencies.arrow]
version = "57.1.0"

[dependencies.clap]
version = "4.3.3"
features = ["derive"]

[dependencies.clustering]
version = "0.2.1"
features = ["parallel"]

[dependencies.csv]
version = "1.2.2"

[dependencies.dhat]
version = "0.3.3"

[dependencies.env_logger]
version = "0.11.8"

[dependencies.flate2]
version = "1.0.26"

[dependencies.geo]
version = "0.31.0"

[dependencies.geo-traits]
version = "0.3.0"

[dependencies.half]
version = "2.6.0"

[dependencies.indicatif]
version = "0.17.5"

[dependencies.itertools]
version = "0.12.1"

[dependencies.json]
version = "0.12.4"

[dependencies.kodama]
version = "0.3.0"

[dependencies.lazy_static]
version = "1.5.0"

[dependencies.libm]
version = "0.2.7"

[dependencies.linregress]
version = "0.5.4"

[dependencies.log]
version = "0.4.27"

[dependencies.ndarray]
version = "0.17.1"
features = [
    "rayon",
    "matrixmultiply-threading",
]

[dependencies.ndarray-npy]
version = "0.10.0"

[dependencies.ndarray-stats]
version = "0.7.0"

[dependencies.num]
version = "0.4.3"

[dependencies.numeric_literals]
version = "0.2.0"

[dependencies.ordered-float]
version = "5.0.0"

[dependencies.parking_lot]
version = "0.12.5"

[dependencies.parquet]
version = "57.1.0"

[dependencies.rand]
version = "0.9.0"

[dependencies.rand_distr]
version = "0.5.1"

[dependencies.rayon]
version = "1.7.0"

[dependencies.regex]
version = "1.10.6"

[dependencies.rstar]
version = "0.12.2"

[dependencies.serde_json]
version = "1.0.140"

[dependencies.thread_local]
version = "1.1.7"

[dependencies.wkb]
version = "0.9.0"

[dependencies.zarrs]
version = "0.22.4"

[profile.release]
debug = 2