predictosaurus 0.10.0

Uncertainty aware haplotype based genomic variant effect prediction
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# THIS FILE IS AUTOMATICALLY GENERATED BY CARGO
#
# When uploading crates to the registry Cargo will automatically
# "normalize" Cargo.toml files for maximal compatibility
# with all versions of Cargo and also rewrite `path` dependencies
# to registry (e.g., crates.io) dependencies.
#
# If you are reading this file be aware that the original Cargo.toml
# will likely look very different (and much more reasonable).
# See Cargo.toml.orig for the original contents.

[package]
edition = "2021"
name = "predictosaurus"
version = "0.10.0"
authors = [
    "Felix Wiegand <felix.wiegand@tu-dortmund.de>",
    "Johannes Köster <johannes.koester@tu-dortmund.de>",
]
build = false
autolib = false
autobins = false
autoexamples = false
autotests = false
autobenches = false
description = "Uncertainty aware haplotype based genomic variant effect prediction"
readme = "README.md"
license = "MIT"

[[bin]]
name = "predictosaurus"
path = "src/main.rs"

[dependencies.anyhow]
version = "1.0.102"

[dependencies.bio]
version = "2.3.0"

[dependencies.clap]
version = "4.5.60"
features = ["derive"]

[dependencies.clap_derive]
version = "4.5.3"

[dependencies.colored]
version = "3"

[dependencies.csv]
version = "1.4.0"

[dependencies.duckdb]
version = "1.4.4"
features = ["bundled"]

[dependencies.env_logger]
version = "0.11.6"

[dependencies.itertools]
version = "0.14.0"

[dependencies.json5]
version = "1.3.1"

[dependencies.log]
version = "0.4.29"

[dependencies.petgraph]
version = "0.8.3"
features = ["serde-1"]

[dependencies.rayon]
version = "1.11.0"

[dependencies.rust-htslib]
version = "0.49.0"

[dependencies.serde]
version = "1.0.228"
features = ["derive"]

[dependencies.serde_json]
version = "1.0.149"

[dependencies.tera]
version = "1.20.1"

[dependencies.varlociraptor]
version = "8.9.3"

[dev-dependencies.tempfile]
version = "3.26.0"

[lints.rust]
unused = "allow"

[profile.release]
lto = "fat"