# Summary
[Introduction](introduction.md)
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# Algorithm
- [Overview](algorithm/overview.md)
- [Graph Construction](algorithm/graph-construction.md)
- [Banded DP Alignment](algorithm/banded-dp.md)
- [Consensus Extraction](algorithm/consensus-extraction.md)
- [Multi-Allele Phasing](algorithm/multi-allele.md)
- [Adaptive Two-Pass Mode](algorithm/adaptive.md)
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# Library Guide
- [Getting Started](library/getting-started.md)
- [Single-Allele Consensus](library/single-allele.md)
- [Multi-Allele Consensus](library/multi-allele.md)
- [Adaptive Mode](library/adaptive-mode.md)
- [Seed Selection](library/seed-selection.md)
- [Read Orientation](library/orientation.md)
- [Flanking-Anchor Preprocessing](library/flanking-anchor.md)
- [Diagnostics and Warnings](library/diagnostics.md)
- [Visualisation](library/visualisation.md)
- [Bridged Consensus](library/bridged-consensus.md)
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# CLI Guide
- [Installation](cli/installation.md)
- [Basic Usage](cli/basic-usage.md)
- [STR Analysis Workflow](cli/str-workflow.md)