pmat 3.11.0

    async fn test_handle_spec_create_with_epic() {
        let temp_dir = TempDir::new().unwrap();
        let output_path = temp_dir.path();

        let result =
            handle_spec_create("Epic Feature", None, Some("EPIC-001"), Some(output_path)).await;

        assert!(result.is_ok());

        let expected_file = output_path.join("epic-feature.md");
        let content = fs::read_to_string(&expected_file).unwrap();
        assert!(content.contains("EPIC-001"));
    }

    #[tokio::test]
    async fn test_handle_spec_create_slug_conversion() {
        let temp_dir = TempDir::new().unwrap();
        let output_path = temp_dir.path();

        let result = handle_spec_create(
            "Complex Feature Name With Spaces",
            None,
            None,
            Some(output_path),
        )
        .await;

        assert!(result.is_ok());

        let expected_file = output_path.join("complex-feature-name-with-spaces.md");
        assert!(expected_file.exists());
    }

    #[tokio::test]
    async fn test_handle_spec_create_template_structure() {
        let temp_dir = TempDir::new().unwrap();
        let output_path = temp_dir.path();

        let result =
            handle_spec_create("Template Test", None, None, Some(output_path)).await;

        assert!(result.is_ok());

        let expected_file = output_path.join("template-test.md");
        let content = fs::read_to_string(&expected_file).unwrap();

        // Check template has all required sections
        assert!(content.contains("---")); // YAML frontmatter
        assert!(content.contains("## Executive Summary"));
        assert!(content.contains("## Scientific Foundation"));
        assert!(content.contains("## Requirements"));
        assert!(content.contains("### Functional Requirements"));
        assert!(content.contains("### Non-Functional Requirements"));
        assert!(content.contains("## Acceptance Criteria"));
        assert!(content.contains("## Code Examples"));
        assert!(content.contains("## Testing Strategy"));
        assert!(content.contains("## References"));
    }

    #[tokio::test]
    async fn test_handle_spec_create_creates_directory() {
        let temp_dir = TempDir::new().unwrap();
        let nested_path = temp_dir.path().join("nested").join("specs");

        let result =
            handle_spec_create("Nested Spec", None, None, Some(&nested_path)).await;

        assert!(result.is_ok());
        assert!(nested_path.exists());
    }

    // ============================================================================
    // Tests for handle_spec_comply (async)
    // ============================================================================

    #[tokio::test]
    async fn test_handle_spec_comply_compliant_spec() {
        let temp_dir = TempDir::new().unwrap();
        let spec_path = temp_dir.path().join("compliant.md");

        // Create a compliant spec with all requirements met
        let content = create_compliant_spec_content();
        fs::write(&spec_path, content).unwrap();

        let result =
            handle_spec_comply(&spec_path, true, SpecOutputFormat::Text).await;

        assert!(result.is_ok());
    }

    #[tokio::test]
    async fn test_handle_spec_comply_missing_issue_refs() {
        let temp_dir = TempDir::new().unwrap();
        let spec_path = temp_dir.path().join("no-issues.md");

        let content = r#"---
title: No Issues Spec
---
# No Issues Spec

## Requirements
- [ ] AC-001: First
"#;
        fs::write(&spec_path, content).unwrap();

        // The function should succeed but report the missing issue refs
        let result =
            handle_spec_comply(&spec_path, true, SpecOutputFormat::Text).await;
        assert!(result.is_ok());
    }

    #[tokio::test]
    async fn test_handle_spec_comply_missing_code_examples() {
        let temp_dir = TempDir::new().unwrap();
        let spec_path = temp_dir.path().join("no-code.md");

        let content = r##"---
title: No Code Spec
issue_refs: ["#123"]
---
# No Code Spec

## Requirements
- [ ] AC-001: First
"##;
        fs::write(&spec_path, content).unwrap();

        let result =
            handle_spec_comply(&spec_path, true, SpecOutputFormat::Text).await;
        assert!(result.is_ok());
    }

    #[tokio::test]
    async fn test_handle_spec_comply_dry_run_no_changes() {
        let temp_dir = TempDir::new().unwrap();
        let spec_path = temp_dir.path().join("dryrun.md");

        let content = r#"---
title: Dry Run Spec
---
# Dry Run Spec
"#;
        fs::write(&spec_path, content).unwrap();

        let original_content = fs::read_to_string(&spec_path).unwrap();

        let result =
            handle_spec_comply(&spec_path, true, SpecOutputFormat::Text).await;
        assert!(result.is_ok());

        // Content should be unchanged in dry run
        let final_content = fs::read_to_string(&spec_path).unwrap();
        assert_eq!(original_content, final_content);
    }

    #[tokio::test]
    async fn test_handle_spec_comply_file_not_found() {
        let result = handle_spec_comply(
            Path::new("/nonexistent/path/spec.md"),
            true,
            SpecOutputFormat::Text,
        )
        .await;

        assert!(result.is_err());
    }

    // ============================================================================
    // Tests for handle_spec_list (async)
    // ============================================================================

    #[tokio::test]
    async fn test_handle_spec_list_empty_directory() {
        let temp_dir = TempDir::new().unwrap();

        let result = handle_spec_list(
            temp_dir.path(),
            None,
            false,
            SpecOutputFormat::Text,
        )
        .await;

        assert!(result.is_ok());
    }

    #[tokio::test]
    async fn test_handle_spec_list_with_specs() {
        let temp_dir = TempDir::new().unwrap();

        // Create a few spec files
        let spec1 = temp_dir.path().join("spec1.md");
        let spec2 = temp_dir.path().join("spec2.md");

        fs::write(&spec1, create_compliant_spec_content()).unwrap();
        fs::write(&spec2, "# Simple Spec\n").unwrap();

        let result = handle_spec_list(
            temp_dir.path(),
            None,
            false,
            SpecOutputFormat::Text,
        )
        .await;

        assert!(result.is_ok());
    }

    #[tokio::test]
    async fn test_handle_spec_list_min_score_filter() {
        let temp_dir = TempDir::new().unwrap();

        let spec1 = temp_dir.path().join("high-score.md");
        let spec2 = temp_dir.path().join("low-score.md");

        fs::write(&spec1, create_compliant_spec_content()).unwrap();
        fs::write(&spec2, "# Low Score\n").unwrap();

        let result = handle_spec_list(
            temp_dir.path(),
            Some(50), // Only specs with score >= 50
            false,
            SpecOutputFormat::Text,
        )
        .await;

        assert!(result.is_ok());
    }

    #[tokio::test]
    async fn test_handle_spec_list_failing_only() {
        let temp_dir = TempDir::new().unwrap();

        let spec1 = temp_dir.path().join("failing.md");
        fs::write(&spec1, "# Failing Spec\n").unwrap();

        let result = handle_spec_list(
            temp_dir.path(),
            None,
            true, // failing_only
            SpecOutputFormat::Text,
        )
        .await;

        assert!(result.is_ok());
    }

    #[tokio::test]
    async fn test_handle_spec_list_json_format() {
        let temp_dir = TempDir::new().unwrap();

        let spec1 = temp_dir.path().join("spec.md");
        fs::write(&spec1, create_compliant_spec_content()).unwrap();

        let result = handle_spec_list(
            temp_dir.path(),
            None,
            false,
            SpecOutputFormat::Json,
        )
        .await;

        assert!(result.is_ok());
    }

    #[tokio::test]
    async fn test_handle_spec_list_markdown_format() {
        let temp_dir = TempDir::new().unwrap();

        let spec1 = temp_dir.path().join("spec.md");
        fs::write(&spec1, create_compliant_spec_content()).unwrap();

        let result = handle_spec_list(
            temp_dir.path(),
            None,
            false,
            SpecOutputFormat::Markdown,
        )
        .await;

        assert!(result.is_ok());
    }

    #[tokio::test]
    async fn test_handle_spec_list_single_file() {
        let temp_dir = TempDir::new().unwrap();
        let spec_path = temp_dir.path().join("single.md");

        fs::write(&spec_path, create_compliant_spec_content()).unwrap();

        // Pass a file path instead of directory
        let result = handle_spec_list(
            &spec_path,
            None,
            false,
            SpecOutputFormat::Text,
        )
        .await;

        assert!(result.is_ok());
    }

    // ============================================================================
    // Edge case tests
    // ============================================================================

    #[test]
    fn test_calculate_spec_score_boundary_at_95() {
        // Test score exactly at passing threshold
        let mut spec = create_empty_spec();
        spec.title = "Test".to_string(); // 5 pts
        spec.issue_refs = vec!["#1".to_string()]; // 10 pts
        spec.code_examples = (0..5)
            .map(|i| CodeExample {
                language: "rust".to_string(),
                code: format!("fn f{}() {{}}", i),
                line: i,
                executable: true,
            })
            .collect(); // 20 pts
        spec.acceptance_criteria = (0..10)
            .map(|i| AcceptanceCriterion {
                text: format!("AC-{}", i),
                complete: false,
                line: i,
            })
            .collect(); // 30 pts
        spec.claims = (0..20)
            .map(|i| ValidationClaim {
                id: format!("C-{}", i),
                text: format!("Claim {}", i),
                line: i,
                category: ClaimCategory::Implementation,
                automatable: false,
                validation_cmd: None,
                expected_pattern: None,
            })
            .collect(); // 20 pts
        spec.test_requirements = (0..5)
            .map(|i| TestRequirement {
                text: format!("Test {}", i),
                test_type: "unit".to_string(),
                code_path: None,
            })
            .collect(); // 15 pts

        let score = calculate_spec_score(&spec);
        // Total should be exactly 100
        assert_eq!(score, 100.0);
        assert!(score >= 95.0);
    }

    #[test]
    fn test_calculate_spec_score_just_below_95() {
        let mut spec = create_empty_spec();
        spec.title = "Test".to_string(); // 5 pts
        spec.issue_refs = vec!["#1".to_string()]; // 10 pts
        spec.code_examples = (0..5)
            .map(|i| CodeExample {
                language: "rust".to_string(),
                code: format!("fn f{}() {{}}", i),
                line: i,
                executable: true,
            })
            .collect(); // 20 pts
        spec.acceptance_criteria = (0..10)
            .map(|i| AcceptanceCriterion {
                text: format!("AC-{}", i),
                complete: false,
                line: i,
            })
            .collect(); // 30 pts
        spec.claims = (0..19)
            .map(|i| ValidationClaim {
                id: format!("C-{}", i),
                text: format!("Claim {}", i),
                line: i,
                category: ClaimCategory::Implementation,
                automatable: false,
                validation_cmd: None,
                expected_pattern: None,
            })
            .collect(); // 19 pts (one less)
        spec.test_requirements = (0..5)
            .map(|i| TestRequirement {
                text: format!("Test {}", i),
                test_type: "unit".to_string(),
                code_path: None,
            })
            .collect(); // 15 pts

        let score = calculate_spec_score(&spec);
        // Total should be 99 (just under max, but tests boundary logic)
        assert_eq!(score, 99.0);
    }

    #[test]
    fn test_format_outputs_consistency() {
        // Ensure all format functions handle the same spec consistently
        let spec = create_full_spec();
        let score = calculate_spec_score(&spec);

        let text = format_spec_score_text(&spec, score, false);
        let json_result = format_spec_score_json(&spec, score);
        let markdown = format_spec_score_markdown(&spec, score);

        // All should succeed
        assert!(!text.is_empty());
        assert!(json_result.is_ok());
        assert!(!markdown.is_empty());

        // All should indicate passing for a full spec
        assert!(text.contains("PASS"));
        let json: serde_json::Value = serde_json::from_str(&json_result.unwrap()).unwrap();
        assert_eq!(json["passing"], true);
        assert!(markdown.contains("PASS"));
    }

    #[test]
    fn test_format_outputs_failing_consistency() {
        let spec = create_empty_spec();
        let score = calculate_spec_score(&spec);

        let text = format_spec_score_text(&spec, score, false);
        let json_result = format_spec_score_json(&spec, score);
        let markdown = format_spec_score_markdown(&spec, score);

        // All should indicate failing for an empty spec
        assert!(text.contains("FAIL"));
        let json: serde_json::Value = serde_json::from_str(&json_result.unwrap()).unwrap();
        assert_eq!(json["passing"], false);
        assert!(markdown.contains("FAIL"));
    }

    // ============================================================================
    // Helper function to create a compliant spec content
    // ============================================================================

    fn create_compliant_spec_content() -> String {
        r##"---
title: Compliant Specification
status: Active
issue_refs: ["#123", "#456"]
---

# Compliant Specification

## Executive Summary

This is a compliant spec with [citation1] and [citation2].

## Scientific Foundation

1. Author et al., 2024. Paper Title. [citation3]
2. Another et al., 2024. Another Paper. [citation4]
3. Third et al., 2024. Third Paper. [citation5]

## Requirements

### Functional Requirements

The system MUST provide functionality.
The system SHOULD handle errors gracefully.
The system SHALL be backwards compatible.

### Non-Functional Requirements

Performance MUST be within acceptable limits.

## Acceptance Criteria

### Core Criteria

- [ ] AC-001: First criterion
- [ ] AC-002: Second criterion
- [ ] AC-003: Third criterion
- [ ] AC-004: Fourth criterion
- [ ] AC-005: Fifth criterion
- [ ] AC-006: Sixth criterion
- [ ] AC-007: Seventh criterion
- [ ] AC-008: Eighth criterion
- [ ] AC-009: Ninth criterion
- [ ] AC-010: Tenth criterion

## Code Examples

### Example 1

```rust
fn example_one() {
    println!("Example 1");
}
```

### Example 2

```rust
fn example_two() {
    println!("Example 2");
}
```

### Example 3

```rust
fn example_three() {
    println!("Example 3");
}
```

### Example 4

```rust
fn example_four() {
    println!("Example 4");
}
```

### Example 5

```rust
fn example_five() {
    println!("Example 5");
}
```

## Testing Strategy

Unit tests must cover 95% of the codebase.
Integration tests must validate all endpoints.
Property tests should verify invariants.
E2e tests should test the full workflow.
Mutation tests should validate test quality.

## References

[citation1] Reference 1
[citation2] Reference 2
[citation3] Reference 3
[citation4] Reference 4
[citation5] Reference 5
"##
        .to_string()
    }
}