pileuphi_lib 0.9.5

High-throughput, extensible SAM/BAM pileup generation library
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95

# THIS FILE IS AUTOMATICALLY GENERATED BY CARGO
#
# When uploading crates to the registry Cargo will automatically
# "normalize" Cargo.toml files for maximal compatibility
# with all versions of Cargo and also rewrite `path` dependencies
# to registry (e.g., crates.io) dependencies.
#
# If you are reading this file be aware that the original Cargo.toml
# will likely look very different (and much more reasonable).
# See Cargo.toml.orig for the original contents.

[package]
edition = "2021"
name = "pileuphi_lib"
version = "0.9.5"
authors = ["Eli Piliper <epiliper@outlook.com>"]
build = "build.rs"
exclude = ["../vendor/*"]
autolib = false
autobins = false
autoexamples = false
autotests = false
autobenches = false
description = "High-throughput, extensible SAM/BAM pileup generation library"
homepage = "https://github.com/epiliper/pileup-hi"
readme = "README.md"
keywords = [
    "bam",
    "sequencing",
    "bioinformatics",
    "variant",
]
categories = [
    "science::bioinformatics",
    "science::bioinformatics::genomics",
    "science::bioinformatics::sequence-analysis",
    "command-line-utilities",
]
license-file = "LICENSE"
resolver = "3"

[badges.maintenance]
status = "actively_developed"

[features]
cli = ["dep:clap"]

[lib]
name = "pileuphi_lib"
path = "src/lib.rs"

[dependencies.bio]
version = "2.3.0"

[dependencies.clap]
version = "4.5.38"
features = [
    "derive",
    "cargo",
]
optional = true

[dependencies.crossbeam]
version = "0.8.4"

[dependencies.ctrlc]
version = "3.5.1"
features = ["termination"]

[dependencies.indexmap]
version = "2.12.0"

[dependencies.itoa]
version = "1.0.15"

[dependencies.likely_stable]
version = "0.1.3"

[dependencies.log]
version = "0.4.29"

[dependencies.num_cpus]
version = "1.16.0"

[dependencies.rust-htslib]
version = "0.49.0"

[dependencies.tikv-jemallocator]
version = "0.5"

[build-dependencies.cc]
version = "1.0"

[build-dependencies.pkg-config]
version = "0.3.32"