phylo 5.1.0

An extensible Phylogenetics library written in rust
Documentation 
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# THIS FILE IS AUTOMATICALLY GENERATED BY CARGO
#
# When uploading crates to the registry Cargo will automatically
# "normalize" Cargo.toml files for maximal compatibility
# with all versions of Cargo and also rewrite `path` dependencies
# to registry (e.g., crates.io) dependencies.
#
# If you are reading this file be aware that the original Cargo.toml
# will likely look very different (and much more reasonable).
# See Cargo.toml.orig for the original contents.

[package]
edition = "2021"
rust-version = "1.87"
name = "phylo"
version = "5.1.0"
authors = ["Sriram Vijendran"]
build = false
exclude = [
    "/CLAUDE.md",
    "/.claude",
    "/comparison",
    "/.github",
    "/.gitignore",
    "/.git-blame-ignore-revs",
    "/.gitmodules",
]
autolib = false
autobins = false
autoexamples = false
autotests = false
autobenches = false
description = "An extensible Phylogenetics library written in rust"
readme = "README.md"
keywords = [
    "bioinformatics",
    "phylogenetics",
]
categories = [
    "data-structures",
    "science",
]
license = "MIT"
repository = "https://github.com/sriram98v/phylo-rs"

[features]
default = [
    "non_crypto_hash",
    "simple_rooted_tree",
]
non_crypto_hash = ["dep:fxhash"]
parallel = ["dep:rayon"]
serde = [
    "dep:serde",
    "vers-vecs/serde",
]
simple_rooted_tree = []

[lib]
name = "phylo"
path = "src/lib.rs"

[[example]]
name = "pairwise-distances"
path = "examples/pairwise-distances.rs"

[[example]]
name = "phylo-rs-contract"
path = "examples/phylo-rs-contract.rs"

[[example]]
name = "phylo-rs-lca"
path = "examples/phylo-rs-lca.rs"

[[example]]
name = "phylo-rs-nni"
path = "examples/phylo-rs-nni.rs"

[[example]]
name = "phylo-rs-read-newick"
path = "examples/phylo-rs-read-newick.rs"

[[example]]
name = "phylo-rs-rfs"
path = "examples/phylo-rs-rfs.rs"

[[example]]
name = "phylo-rs-traverse"
path = "examples/phylo-rs-traverse.rs"

[[example]]
name = "phylo-rs-yts"
path = "examples/phylo-rs-yts.rs"

[[example]]
name = "phylogenetic-diversity"
path = "examples/phylogenetic-diversity.rs"

[[example]]
name = "phylotree-lca"
path = "examples/phylotree-lca.rs"

[[example]]
name = "phylotree-read-newick"
path = "examples/phylotree-read-newick.rs"

[[example]]
name = "phylotree-rfs"
path = "examples/phylotree-rfs.rs"

[[example]]
name = "phylotree-traverse"
path = "examples/phylotree-traverse.rs"

[[example]]
name = "phylotree-yts"
path = "examples/phylotree-yts.rs"

[[test]]
name = "memory-report"
path = "tests/memory-report.rs"

[[test]]
name = "node-tests"
path = "tests/node-tests.rs"

[[test]]
name = "tree-tests"
path = "tests/tree-tests.rs"

[[bench]]
name = "main"
path = "benches/main.rs"
harness = false

[dependencies.fxhash]
version = "0.2.1"
optional = true

[dependencies.getrandom]
version = "0.2"
features = ["js"]

[dependencies.itertools]
version = "0.11.0"

[dependencies.nalgebra]
version = "0.33"
features = ["std"]
default-features = false

[dependencies.num]
version = "0.4.1"

[dependencies.num-traits]
version = "0.2"

[dependencies.rand]
version = "0.8.5"

[dependencies.rayon]
version = "1.10.0"
optional = true

[dependencies.serde]
version = "1"
features = [
    "derive",
    "rc",
]
optional = true

[dependencies.thiserror]
version = "1.0.65"

[dependencies.vers-vecs]
version = "1.5.1"

[dev-dependencies.divan]
version = "0.1.14"

[dev-dependencies.indicatif]
version = "0.17.11"

[dev-dependencies.phylotree]
version = "0.1.3"

[dev-dependencies.proptest]
version = "1.4"

[dev-dependencies.serde_json]
version = "1"