pharmsol 0.27.1

Rust library for solving analytic and ode-defined pharmacometric models.
Documentation 
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199

#[path = "support/runtime_corpus.rs"]
mod runtime_corpus;

#[cfg(all(feature = "dsl-jit", feature = "dsl-wasm"))]
mod tests {
    use super::runtime_corpus::{self as corpus, CorpusCase};
    use pharmsol::dsl::RuntimeBackend;

    #[test]
    fn ode_runtime_backend_matrix_matches_reference_predictions(
    ) -> Result<(), Box<dyn std::error::Error>> {
        #[cfg(all(feature = "dsl-aot", feature = "dsl-aot-load"))]
        let workspace = super::runtime_corpus::ArtifactWorkspace::new()?;

        let jit = corpus::compile_runtime_jit_model(CorpusCase::Ode)?;
        assert_eq!(jit.backend(), RuntimeBackend::Jit);
        corpus::assert_runtime_model_matches_reference(CorpusCase::Ode, "runtime-jit", &jit)?;

        #[cfg(all(feature = "dsl-aot", feature = "dsl-aot-load"))]
        let aot = corpus::compile_runtime_native_aot_model(CorpusCase::Ode, &workspace)?;
        #[cfg(all(feature = "dsl-aot", feature = "dsl-aot-load"))]
        assert_eq!(aot.backend(), RuntimeBackend::NativeAot);
        #[cfg(all(feature = "dsl-aot", feature = "dsl-aot-load"))]
        corpus::assert_runtime_model_matches_reference(
            CorpusCase::Ode,
            "runtime-native-aot",
            &aot,
        )?;

        let wasm = corpus::compile_runtime_wasm_model(CorpusCase::Ode)?;
        assert_eq!(wasm.backend(), RuntimeBackend::Wasm);
        corpus::assert_runtime_model_matches_reference(CorpusCase::Ode, "runtime-wasm", &wasm)?;
        corpus::assert_runtime_models_match_each_other(
            CorpusCase::Ode,
            "runtime-jit",
            &jit,
            "runtime-wasm",
            &wasm,
        )?;

        Ok(())
    }

    #[test]
    fn analytical_runtime_backend_matrix_matches_reference_predictions(
    ) -> Result<(), Box<dyn std::error::Error>> {
        #[cfg(all(feature = "dsl-aot", feature = "dsl-aot-load"))]
        let workspace = super::runtime_corpus::ArtifactWorkspace::new()?;

        let jit = corpus::compile_runtime_jit_model(CorpusCase::Analytical)?;
        assert_eq!(jit.backend(), RuntimeBackend::Jit);
        corpus::assert_runtime_model_matches_reference(
            CorpusCase::Analytical,
            "runtime-jit",
            &jit,
        )?;

        #[cfg(all(feature = "dsl-aot", feature = "dsl-aot-load"))]
        let aot = corpus::compile_runtime_native_aot_model(CorpusCase::Analytical, &workspace)?;
        #[cfg(all(feature = "dsl-aot", feature = "dsl-aot-load"))]
        assert_eq!(aot.backend(), RuntimeBackend::NativeAot);
        #[cfg(all(feature = "dsl-aot", feature = "dsl-aot-load"))]
        corpus::assert_runtime_model_matches_reference(
            CorpusCase::Analytical,
            "runtime-native-aot",
            &aot,
        )?;

        let wasm = corpus::compile_runtime_wasm_model(CorpusCase::Analytical)?;
        assert_eq!(wasm.backend(), RuntimeBackend::Wasm);
        corpus::assert_runtime_model_matches_reference(
            CorpusCase::Analytical,
            "runtime-wasm",
            &wasm,
        )?;
        corpus::assert_runtime_models_match_each_other(
            CorpusCase::Analytical,
            "runtime-jit",
            &jit,
            "runtime-wasm",
            &wasm,
        )?;

        Ok(())
    }

    #[test]
    fn analytical_full_runtime_backend_matrix_matches_reference_predictions(
    ) -> Result<(), Box<dyn std::error::Error>> {
        #[cfg(all(feature = "dsl-aot", feature = "dsl-aot-load"))]
        let workspace = super::runtime_corpus::ArtifactWorkspace::new()?;

        let jit = corpus::compile_runtime_jit_model(CorpusCase::AnalyticalFull)?;
        assert_eq!(jit.backend(), RuntimeBackend::Jit);
        corpus::assert_runtime_model_matches_reference(
            CorpusCase::AnalyticalFull,
            "runtime-jit",
            &jit,
        )?;

        #[cfg(all(feature = "dsl-aot", feature = "dsl-aot-load"))]
        let aot = corpus::compile_runtime_native_aot_model(CorpusCase::AnalyticalFull, &workspace)?;
        #[cfg(all(feature = "dsl-aot", feature = "dsl-aot-load"))]
        assert_eq!(aot.backend(), RuntimeBackend::NativeAot);
        #[cfg(all(feature = "dsl-aot", feature = "dsl-aot-load"))]
        corpus::assert_runtime_model_matches_reference(
            CorpusCase::AnalyticalFull,
            "runtime-native-aot",
            &aot,
        )?;

        let wasm = corpus::compile_runtime_wasm_model(CorpusCase::AnalyticalFull)?;
        assert_eq!(wasm.backend(), RuntimeBackend::Wasm);
        corpus::assert_runtime_model_matches_reference(
            CorpusCase::AnalyticalFull,
            "runtime-wasm",
            &wasm,
        )?;
        corpus::assert_runtime_models_match_each_other(
            CorpusCase::AnalyticalFull,
            "runtime-jit",
            &jit,
            "runtime-wasm",
            &wasm,
        )?;

        Ok(())
    }

    #[test]
    fn ode_full_runtime_backend_matrix_matches_reference_predictions(
    ) -> Result<(), Box<dyn std::error::Error>> {
        #[cfg(all(feature = "dsl-aot", feature = "dsl-aot-load"))]
        let workspace = super::runtime_corpus::ArtifactWorkspace::new()?;

        let jit = corpus::compile_runtime_jit_model(CorpusCase::OdeFull)?;
        assert_eq!(jit.backend(), RuntimeBackend::Jit);
        corpus::assert_runtime_model_matches_reference(CorpusCase::OdeFull, "runtime-jit", &jit)?;

        #[cfg(all(feature = "dsl-aot", feature = "dsl-aot-load"))]
        let aot = corpus::compile_runtime_native_aot_model(CorpusCase::OdeFull, &workspace)?;
        #[cfg(all(feature = "dsl-aot", feature = "dsl-aot-load"))]
        assert_eq!(aot.backend(), RuntimeBackend::NativeAot);
        #[cfg(all(feature = "dsl-aot", feature = "dsl-aot-load"))]
        corpus::assert_runtime_model_matches_reference(
            CorpusCase::OdeFull,
            "runtime-native-aot",
            &aot,
        )?;

        let wasm = corpus::compile_runtime_wasm_model(CorpusCase::OdeFull)?;
        assert_eq!(wasm.backend(), RuntimeBackend::Wasm);
        corpus::assert_runtime_model_matches_reference(CorpusCase::OdeFull, "runtime-wasm", &wasm)?;
        corpus::assert_runtime_models_match_each_other(
            CorpusCase::OdeFull,
            "runtime-jit",
            &jit,
            "runtime-wasm",
            &wasm,
        )?;

        Ok(())
    }

    #[test]
    fn sde_runtime_backend_matrix_matches_reference_predictions(
    ) -> Result<(), Box<dyn std::error::Error>> {
        #[cfg(all(feature = "dsl-aot", feature = "dsl-aot-load"))]
        let workspace = super::runtime_corpus::ArtifactWorkspace::new()?;

        let jit = corpus::compile_runtime_jit_model(CorpusCase::Sde)?;
        assert_eq!(jit.backend(), RuntimeBackend::Jit);
        corpus::assert_runtime_model_matches_reference(CorpusCase::Sde, "runtime-jit", &jit)?;

        #[cfg(all(feature = "dsl-aot", feature = "dsl-aot-load"))]
        let aot = corpus::compile_runtime_native_aot_model(CorpusCase::Sde, &workspace)?;
        #[cfg(all(feature = "dsl-aot", feature = "dsl-aot-load"))]
        assert_eq!(aot.backend(), RuntimeBackend::NativeAot);
        #[cfg(all(feature = "dsl-aot", feature = "dsl-aot-load"))]
        corpus::assert_runtime_model_matches_reference(
            CorpusCase::Sde,
            "runtime-native-aot",
            &aot,
        )?;

        let wasm = corpus::compile_runtime_wasm_model(CorpusCase::Sde)?;
        assert_eq!(wasm.backend(), RuntimeBackend::Wasm);
        corpus::assert_runtime_model_matches_reference(CorpusCase::Sde, "runtime-wasm", &wasm)?;
        corpus::assert_runtime_models_match_each_other(
            CorpusCase::Sde,
            "runtime-jit",
            &jit,
            "runtime-wasm",
            &wasm,
        )?;

        Ok(())
    }
}