pgm-extra 1.3.0

PGM-Extra: high-performance learned index structures for Rust
Documentation
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
//! Multi-level recursive PGM-Index.
//!
//! This is the primary external-keys index with recursive segment levels
//! for optimal query performance on large datasets.

use alloc::vec;
use alloc::vec::Vec;
use core::ops::RangeBounds;

use crate::error::Error;

use crate::index::Segment;
use crate::index::key::Indexable;
use crate::index::model::build_segments;

use crate::util::ApproxPos;
use crate::util::range::range_to_indices;
use crate::util::search::{pgm_add_eps, pgm_sub_eps};

const LINEAR_SEARCH_THRESHOLD_SEGMENTS: usize = 32;

/// A multi-level recursive PGM-Index.
///
/// This index builds multiple levels of linear models for efficient lookups.
/// It does not own the data; the keys must be stored separately and passed
/// to query methods.
///
/// # Type Parameters
///
/// - `T`: The value type that implements [`Indexable`]. The index internally
///   stores segments of `T::Key` for the linear models.
///
/// # Example
///
/// ```
/// use pgm_extra::index::external::Static;
///
/// let keys: Vec<u64> = (0..10000).collect();
/// let index = Static::new(&keys, 64, 4).unwrap();
///
/// assert!(index.contains(&keys, &5000));
/// assert_eq!(index.lower_bound(&keys, &5000), 5000);
/// ```
#[derive(Clone, Debug, PartialEq)]
#[cfg_attr(
    feature = "rkyv",
    derive(rkyv::Archive, rkyv::Serialize, rkyv::Deserialize)
)]
#[cfg_attr(feature = "serde", derive(serde::Serialize, serde::Deserialize))]
#[cfg_attr(
    feature = "serde",
    serde(bound = "T::Key: serde::Serialize + serde::de::DeserializeOwned")
)]
pub struct Static<T: Indexable> {
    epsilon: usize,
    epsilon_recursive: usize,
    len: usize,
    levels_offsets: Vec<usize>,
    segments: Vec<Segment<T::Key>>,
}

impl<T: Indexable> Static<T>
where
    T::Key: Ord,
{
    /// Build a new multi-level PGM-Index from sorted data.
    ///
    /// # Parameters
    ///
    /// - `data`: A sorted slice of values
    /// - `epsilon`: Error bound for the bottom level (larger = fewer segments)
    /// - `epsilon_recursive`: Error bound for upper levels
    ///
    /// # Errors
    ///
    /// Returns an error if `data` is empty or `epsilon` is 0.
    pub fn new(data: &[T], epsilon: usize, epsilon_recursive: usize) -> Result<Self, Error> {
        if data.is_empty() {
            return Err(Error::EmptyInput);
        }
        if epsilon == 0 {
            return Err(Error::InvalidEpsilon);
        }

        debug_assert!(
            data.windows(2)
                .all(|w| w[0].index_key() <= w[1].index_key()),
            "data must be sorted by index key"
        );

        let keys: Vec<T::Key> = data.iter().map(|v| v.index_key()).collect();
        Self::build_from_keys(&keys, epsilon, epsilon_recursive)
    }

    /// Build from pre-extracted keys (internal use).
    pub(crate) fn build_from_keys(
        keys: &[T::Key],
        epsilon: usize,
        epsilon_recursive: usize,
    ) -> Result<Self, Error> {
        let bottom_segments = build_segments(keys, epsilon);

        if bottom_segments.is_empty() {
            return Err(Error::EmptyInput);
        }

        let mut levels: Vec<Vec<Segment<T::Key>>> = vec![bottom_segments];

        while epsilon_recursive > 0 && levels.last().unwrap().len() > 1 {
            let prev_level = levels.last().unwrap();
            let super_keys: Vec<T::Key> = prev_level.iter().map(|s| s.key).collect();
            let upper_segments = build_segments(&super_keys, epsilon_recursive);

            if upper_segments.len() >= prev_level.len() {
                break;
            }

            levels.push(upper_segments);
        }

        let total_segments: usize = levels.iter().map(|l| l.len()).sum();
        let mut segments = Vec::with_capacity(total_segments);
        let mut levels_offsets = Vec::with_capacity(levels.len() + 1);

        levels_offsets.push(0);
        for level in levels.iter().rev() {
            segments.extend_from_slice(level);
            levels_offsets.push(segments.len());
        }

        Ok(Self {
            segments,
            levels_offsets,
            epsilon,
            epsilon_recursive,
            len: keys.len(),
        })
    }

    #[cfg(feature = "parallel")]
    pub fn new_parallel(
        data: &[T],
        epsilon: usize,
        epsilon_recursive: usize,
    ) -> Result<Self, Error> {
        use crate::index::model::build_segments_parallel;

        if data.is_empty() {
            return Err(Error::EmptyInput);
        }
        if epsilon == 0 {
            return Err(Error::InvalidEpsilon);
        }

        debug_assert!(
            data.windows(2)
                .all(|w| w[0].index_key() <= w[1].index_key()),
            "data must be sorted by index key"
        );

        let keys: Vec<T::Key> = data.iter().map(|v| v.index_key()).collect();

        let bottom_segments = build_segments_parallel(&keys, epsilon);

        if bottom_segments.is_empty() {
            return Err(Error::EmptyInput);
        }

        let mut levels: Vec<Vec<Segment<T::Key>>> = vec![bottom_segments];

        while epsilon_recursive > 0 && levels.last().unwrap().len() > 1 {
            let prev_level = levels.last().unwrap();
            let super_keys: Vec<T::Key> = prev_level.iter().map(|s| s.key).collect();
            let upper_segments = build_segments(&super_keys, epsilon_recursive);

            if upper_segments.len() >= prev_level.len() {
                break;
            }

            levels.push(upper_segments);
        }

        let total_segments: usize = levels.iter().map(|l| l.len()).sum();
        let mut segments = Vec::with_capacity(total_segments);
        let mut levels_offsets = Vec::with_capacity(levels.len() + 1);

        levels_offsets.push(0);
        for level in levels.iter().rev() {
            segments.extend_from_slice(level);
            levels_offsets.push(segments.len());
        }

        Ok(Self {
            segments,
            levels_offsets,
            epsilon,
            epsilon_recursive,
            len: keys.len(),
        })
    }

    #[inline]
    fn search_segment(&self, level: usize, key: &T::Key, lo: usize, hi: usize) -> usize {
        let level_start = self.levels_offsets[level];
        let level_end = self.levels_offsets[level + 1];
        let level_size = level_end - level_start;

        let lo = lo.min(level_size);
        let hi = hi.min(level_size);

        if hi <= lo {
            return lo;
        }

        let abs_lo = level_start + lo;
        let abs_hi = level_start + hi;

        if abs_hi - abs_lo <= LINEAR_SEARCH_THRESHOLD_SEGMENTS {
            let mut idx = abs_lo;
            while idx + 1 < abs_hi && self.segments[idx + 1].key <= *key {
                idx += 1;
            }
            idx - level_start
        } else {
            let slice = &self.segments[abs_lo..abs_hi];
            let pos = slice.partition_point(|s| s.key <= *key);
            let pos = pos.saturating_sub(1);
            lo + pos
        }
    }

    /// Get an approximate position for the given value.
    #[inline]
    pub fn search(&self, value: &T) -> ApproxPos {
        let key = value.index_key();
        self.search_by_key(&key)
    }

    /// Get an approximate position for the given key.
    #[inline]
    pub fn search_by_key(&self, key: &T::Key) -> ApproxPos {
        let num_levels = self.levels_offsets.len() - 1;

        if num_levels == 0 {
            return ApproxPos::new(0, 0, self.len);
        }

        let mut seg_lo = 0usize;
        let mut seg_hi = self.levels_offsets[1];

        for level in 0..num_levels - 1 {
            let level_start = self.levels_offsets[level];
            let level_size = self.levels_offsets[level + 1] - level_start;

            let local_idx = self.search_segment(level, key, seg_lo, seg_hi.min(level_size));
            let segment = &self.segments[level_start + local_idx];

            let next_level_start = self.levels_offsets[level + 1];
            let next_level_size = self.levels_offsets[level + 2] - next_level_start;
            let predicted = segment.predict(*key).min(next_level_size.saturating_sub(1));

            seg_lo = pgm_sub_eps(predicted, self.epsilon_recursive + 1);
            seg_hi = pgm_add_eps(predicted, self.epsilon_recursive, next_level_size);
        }

        let bottom_level = num_levels - 1;
        let bottom_start = self.levels_offsets[bottom_level];
        let bottom_size = self.levels_offsets[bottom_level + 1] - bottom_start;

        let local_idx = self.search_segment(bottom_level, key, seg_lo, seg_hi.min(bottom_size));
        let segment = &self.segments[bottom_start + local_idx];

        let pos = segment.predict(*key).min(self.len.saturating_sub(1));
        let lo = pgm_sub_eps(pos, self.epsilon);
        let hi = pgm_add_eps(pos, self.epsilon, self.len);

        ApproxPos::new(pos, lo, hi)
    }

    /// Find the first position where `data[pos] >= value`.
    #[inline]
    pub fn lower_bound(&self, data: &[T], value: &T) -> usize
    where
        T: Ord,
    {
        let key = value.index_key();
        let approx = self.search_by_key(&key);
        let len = data.len();
        if len == 0 {
            return 0;
        }

        let pos = approx.pos.min(len - 1);
        if data[pos] == *value {
            let mut i = pos;
            while i > 0 && data[i - 1] == *value {
                i -= 1;
            }
            return i;
        }

        if data[pos] < *value {
            if pos + 1 < len && data[pos + 1] >= *value {
                return pos + 1;
            }
        } else if pos > 0 && data[pos - 1] < *value {
            return pos;
        }

        let lo = approx.lo;
        let hi = approx.hi.min(len);
        let slice = &data[lo..hi];
        lo + slice.partition_point(|x| x < value)
    }

    /// Find the first position where `data[pos] > value`.
    #[inline]
    pub fn upper_bound(&self, data: &[T], value: &T) -> usize
    where
        T: Ord,
    {
        let idx = self.lower_bound(data, value);
        let mut i = idx;
        while i < data.len() && data[i] == *value {
            i += 1;
        }
        i
    }

    /// Check if the value exists in the data.
    #[inline]
    pub fn contains(&self, data: &[T], value: &T) -> bool
    where
        T: Ord,
    {
        let key = value.index_key();
        let approx = self.search_by_key(&key);
        let len = data.len();

        if len == 0 {
            return false;
        }

        let pos = approx.pos.min(len - 1);
        if data[pos] == *value {
            return true;
        }

        let lo = approx.lo;
        let hi = approx.hi.min(len);
        data[lo..hi].binary_search(value).is_ok()
    }

    /// Number of elements the index was built for.
    #[inline]
    pub fn len(&self) -> usize {
        self.len
    }

    #[inline]
    pub fn is_empty(&self) -> bool {
        self.len == 0
    }

    /// Number of segments across all levels.
    #[inline]
    pub fn segments_count(&self) -> usize {
        self.segments.len()
    }

    /// Number of levels in the index.
    #[inline]
    pub fn height(&self) -> usize {
        self.levels_offsets.len().saturating_sub(1)
    }

    #[inline]
    pub fn epsilon(&self) -> usize {
        self.epsilon
    }

    #[inline]
    pub fn epsilon_recursive(&self) -> usize {
        self.epsilon_recursive
    }

    /// Approximate memory usage in bytes.
    pub fn size_in_bytes(&self) -> usize {
        core::mem::size_of::<Self>()
            + self.segments.capacity() * core::mem::size_of::<Segment<T::Key>>()
            + self.levels_offsets.capacity() * core::mem::size_of::<usize>()
    }

    /// Returns the (start, end) indices for iterating over data in the given range.
    #[inline]
    pub fn range_indices<R>(&self, data: &[T], range: R) -> (usize, usize)
    where
        T: Ord,
        R: RangeBounds<T>,
    {
        range_to_indices(
            range,
            data.len(),
            |v| self.lower_bound(data, v),
            |v| self.upper_bound(data, v),
        )
    }

    /// Returns an iterator over data in the given range.
    #[inline]
    pub fn range<'a, R>(&self, data: &'a [T], range: R) -> impl DoubleEndedIterator<Item = &'a T>
    where
        T: Ord,
        R: RangeBounds<T>,
    {
        let (start, end) = self.range_indices(data, range);
        data[start..end].iter()
    }
}

impl<T: Indexable> crate::index::External<T> for Static<T>
where
    T::Key: Ord,
{
    #[inline]
    fn search(&self, value: &T) -> ApproxPos {
        self.search(value)
    }

    #[inline]
    fn lower_bound(&self, data: &[T], value: &T) -> usize
    where
        T: Ord,
    {
        self.lower_bound(data, value)
    }

    #[inline]
    fn upper_bound(&self, data: &[T], value: &T) -> usize
    where
        T: Ord,
    {
        self.upper_bound(data, value)
    }

    #[inline]
    fn contains(&self, data: &[T], value: &T) -> bool
    where
        T: Ord,
    {
        self.contains(data, value)
    }

    #[inline]
    fn len(&self) -> usize {
        self.len()
    }

    #[inline]
    fn segments_count(&self) -> usize {
        self.segments_count()
    }

    #[inline]
    fn epsilon(&self) -> usize {
        self.epsilon()
    }

    #[inline]
    fn size_in_bytes(&self) -> usize {
        self.size_in_bytes()
    }
}

#[cfg(test)]
mod tests {
    use super::*;
    use alloc::vec::Vec;

    #[test]
    fn test_pgm_index_basic() {
        let keys: Vec<u64> = (0..10000).collect();
        let index = Static::new(&keys, 64, 4).unwrap();

        assert_eq!(index.len(), 10000);
        assert!(!index.is_empty());
        assert!(index.height() >= 1);
    }

    #[test]
    fn test_pgm_index_search() {
        let keys: Vec<u64> = (0..10000).collect();
        let index = Static::new(&keys, 64, 4).unwrap();

        for &key in &[0u64, 100, 5000, 9999] {
            let idx = index.lower_bound(&keys, &key);
            assert_eq!(idx, key as usize, "Failed for key {}", key);
        }
    }

    #[test]
    fn test_pgm_index_sparse() {
        let keys: Vec<u64> = (0..1000).map(|i| i * 1000).collect();
        let index = Static::new(&keys, 16, 4).unwrap();

        for (i, &key) in keys.iter().enumerate() {
            let idx = index.lower_bound(&keys, &key);
            assert_eq!(idx, i, "Failed for key {} at index {}", key, i);
        }
    }

    #[test]
    fn test_pgm_index_contains() {
        let keys: Vec<u64> = (0..100).map(|i| i * 2).collect();
        let index = Static::new(&keys, 8, 4).unwrap();

        assert!(index.contains(&keys, &0));
        assert!(index.contains(&keys, &100));
        assert!(!index.contains(&keys, &1));
        assert!(!index.contains(&keys, &99));
    }

    #[test]
    fn test_pgm_index_signed() {
        let keys: Vec<i64> = (-500..500).collect();
        let index = Static::new(&keys, 16, 4).unwrap();

        for &key in &[-500i64, -100, 0, 100, 499] {
            let expected = (key + 500) as usize;
            let idx = index.lower_bound(&keys, &key);
            assert_eq!(idx, expected, "Failed for key {}", key);
        }
    }

    #[test]
    fn test_pgm_index_duplicates() {
        let keys: Vec<u64> = vec![1, 1, 2, 2, 2, 3, 3, 4, 5, 5, 5, 5];
        let index = Static::new(&keys, 4, 2).unwrap();

        assert_eq!(index.lower_bound(&keys, &1), 0);
        assert_eq!(index.lower_bound(&keys, &2), 2);
        assert_eq!(index.lower_bound(&keys, &5), 8);
    }

    #[test]
    fn test_empty_input_error() {
        let keys: Vec<u64> = vec![];
        let result = Static::new(&keys, 64, 4);
        assert_eq!(result.unwrap_err(), Error::EmptyInput);
    }

    #[test]
    fn test_invalid_epsilon_error() {
        let keys: Vec<u64> = vec![1, 2, 3];
        let result = Static::new(&keys, 0, 4);
        assert_eq!(result.unwrap_err(), Error::InvalidEpsilon);
    }

    #[test]
    fn test_single_element() {
        let keys: Vec<u64> = vec![42];
        let index = Static::new(&keys, 64, 4).unwrap();

        assert_eq!(index.len(), 1);
        assert_eq!(index.height(), 1);
        assert!(index.contains(&keys, &42));
        assert!(!index.contains(&keys, &0));
        assert!(!index.contains(&keys, &100));
        assert_eq!(index.lower_bound(&keys, &42), 0);
        assert_eq!(index.lower_bound(&keys, &0), 0);
        assert_eq!(index.lower_bound(&keys, &100), 1);
    }

    #[test]
    fn test_epsilon_recursive_zero() {
        let keys: Vec<u64> = (0..1000).collect();
        let index = Static::new(&keys, 64, 0).unwrap();

        assert_eq!(index.height(), 1);
        assert!(index.contains(&keys, &500));
        assert_eq!(index.lower_bound(&keys, &500), 500);
    }

    #[test]
    fn test_very_small_epsilon() {
        let keys: Vec<u64> = (0..100).collect();
        let index = Static::new(&keys, 1, 1).unwrap();

        for &key in &[0u64, 50, 99] {
            assert!(index.contains(&keys, &key));
            assert_eq!(index.lower_bound(&keys, &key), key as usize);
        }
    }

    #[test]
    fn test_very_large_epsilon() {
        let keys: Vec<u64> = (0..100).collect();
        let index = Static::new(&keys, 1000, 1000).unwrap();

        assert_eq!(index.segments_count(), 1);
        for &key in &[0u64, 50, 99] {
            assert!(index.contains(&keys, &key));
        }
    }

    #[test]
    fn test_upper_bound() {
        let keys: Vec<u64> = vec![1, 1, 2, 2, 2, 3, 3, 4, 5, 5, 5, 5];
        let index = Static::new(&keys, 4, 2).unwrap();

        assert_eq!(index.upper_bound(&keys, &1), 2);
        assert_eq!(index.upper_bound(&keys, &2), 5);
        assert_eq!(index.upper_bound(&keys, &5), 12);
        assert_eq!(index.upper_bound(&keys, &0), 0);
        assert_eq!(index.upper_bound(&keys, &6), 12);
    }

    #[test]
    fn test_range_all_variants() {
        let keys: Vec<u64> = (0..100).collect();
        let index = Static::new(&keys, 16, 4).unwrap();

        let range_full: Vec<_> = index.range(&keys, ..).copied().collect();
        assert_eq!(range_full.len(), 100);

        let range_from: Vec<_> = index.range(&keys, 90..).copied().collect();
        assert_eq!(range_from, (90..100).collect::<Vec<_>>());

        let range_to: Vec<_> = index.range(&keys, ..10).copied().collect();
        assert_eq!(range_to, (0..10).collect::<Vec<_>>());

        let range_to_inclusive: Vec<_> = index.range(&keys, ..=10).copied().collect();
        assert_eq!(range_to_inclusive, (0..=10).collect::<Vec<_>>());

        let range_bounded: Vec<_> = index.range(&keys, 10..20).copied().collect();
        assert_eq!(range_bounded, (10..20).collect::<Vec<_>>());

        let range_bounded_inclusive: Vec<_> = index.range(&keys, 10..=20).copied().collect();
        assert_eq!(range_bounded_inclusive, (10..=20).collect::<Vec<_>>());
    }

    #[test]
    fn test_range_empty() {
        let keys: Vec<u64> = (0..100).collect();
        let index = Static::new(&keys, 16, 4).unwrap();

        let empty: Vec<_> = index.range(&keys, 200..300).copied().collect();
        assert!(empty.is_empty());
    }

    #[test]
    fn test_size_in_bytes() {
        let keys: Vec<u64> = (0..1000).collect();
        let index = Static::new(&keys, 64, 4).unwrap();

        assert!(index.size_in_bytes() > 0);
    }
}