pathrex-sys 0.1.0

Native FFI bindings for SuiteSparse:GraphBLAS and LAGraph used by the pathrex crate.
Documentation
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
//------------------------------------------------------------------------------
// LAGr_SingleSourceShortestPath: single-source shortest path
//------------------------------------------------------------------------------

// LAGraph, (c) 2019-2022 by The LAGraph Contributors, All Rights Reserved.
// SPDX-License-Identifier: BSD-2-Clause
//
// For additional details (including references to third party source code and
// other files) see the LICENSE file or contact permission@sei.cmu.edu. See
// Contributors.txt for a full list of contributors. Created, in part, with
// funding and support from the U.S. Government (see Acknowledgments.txt file).
// DM22-0790

// Contributed by Jinhao Chen, Scott Kolodziej and Tim Davis, Texas A&M
// University.  Adapted from GraphBLAS Template Library (GBTL) by Scott
// McMillan and Tze Meng Low.

//------------------------------------------------------------------------------

// This is an Advanced algorithm (G->emin is required).

// Single source shortest path with delta stepping.

// U. Sridhar, M. Blanco, R. Mayuranath, D. G. Spampinato, T. M. Low, and
// S. McMillan, "Delta-Stepping SSSP: From Vertices and Edges to GraphBLAS
// Implementations," in 2019 IEEE International Parallel and Distributed
// Processing Symposium Workshops (IPDPSW), 2019, pp. 241–250.
// https://ieeexplore.ieee.org/document/8778222/references
// https://arxiv.org/abs/1911.06895

// LAGr_SingleSourceShortestPath computes the shortest path lengths from the
// specified source vertex to all other vertices in the graph.

// The parent vector is not computed; see LAGraph_BF_* instead.

// NOTE: this method gets stuck in an infinite loop when there are negative-
// weight cycles in the graph.

// FUTURE: a Basic algorithm that picks Delta automatically

#define LG_FREE_WORK        \
{                           \
    GrB_free (&AL) ;        \
    GrB_free (&AH) ;        \
    GrB_free (&lBound) ;    \
    GrB_free (&uBound) ;    \
    GrB_free (&tmasked) ;   \
    GrB_free (&tReq) ;      \
    GrB_free (&tless) ;     \
    GrB_free (&s) ;         \
    GrB_free (&reach) ;     \
    GrB_free (&Empty) ;     \
}

#define LG_FREE_ALL         \
{                           \
    LG_FREE_WORK ;          \
    GrB_free (&t) ;         \
}

#include "LG_internal.h"

#define setelement(s, k)                                                      \
{                                                                             \
    switch (tcode)                                                            \
    {                                                                         \
        default:                                                              \
        case 0 : GrB_Scalar_setElement_INT32  (s, k * delta_int32 ) ; break ; \
        case 1 : GrB_Scalar_setElement_INT64  (s, k * delta_int64 ) ; break ; \
        case 2 : GrB_Scalar_setElement_UINT32 (s, k * delta_uint32) ; break ; \
        case 3 : GrB_Scalar_setElement_UINT64 (s, k * delta_uint64) ; break ; \
        case 4 : GrB_Scalar_setElement_FP32   (s, k * delta_fp32  ) ; break ; \
        case 5 : GrB_Scalar_setElement_FP64   (s, k * delta_fp64  ) ; break ; \
    }                                                                         \
}

int LAGr_SingleSourceShortestPath
(
    // output:
    GrB_Vector *path_length,    // path_length (i) is the length of the shortest
                                // path from the source vertex to vertex i
    // input:
    const LAGraph_Graph G,      // input graph, not modified
    GrB_Index source,           // source vertex
    GrB_Scalar Delta,           // delta value for delta stepping
    char *msg
)
{

    //--------------------------------------------------------------------------
    // check inputs
    //--------------------------------------------------------------------------

    LG_CLEAR_MSG ;
    GrB_Scalar lBound = NULL ;  // the threshold for GrB_select
    GrB_Scalar uBound = NULL ;  // the threshold for GrB_select
    GrB_Matrix AL = NULL ;      // graph containing the light weight edges
    GrB_Matrix AH = NULL ;      // graph containing the heavy weight edges
    GrB_Vector t = NULL ;       // tentative shortest path length
    GrB_Vector tmasked = NULL ;
    GrB_Vector tReq = NULL ;
    GrB_Vector tless = NULL ;
    GrB_Vector s = NULL ;
    GrB_Vector reach = NULL ;
    GrB_Vector Empty = NULL ;

    LG_TRY (LAGraph_CheckGraph (G, msg)) ;
    LG_ASSERT (path_length != NULL && Delta != NULL, GrB_NULL_POINTER) ;
    (*path_length) = NULL ;

    GrB_Index nvals ;
    LG_TRY (GrB_Scalar_nvals (&nvals, Delta)) ;
    LG_ASSERT_MSG (nvals == 1, GrB_EMPTY_OBJECT, "Delta is missing") ;

    GrB_Matrix A = G->A ;
    GrB_Index n ;
    GRB_TRY (GrB_Matrix_nrows (&n, A)) ;
    LG_ASSERT_MSG (source < n, GrB_INVALID_INDEX, "invalid source node") ;

    //--------------------------------------------------------------------------
    // initializations
    //--------------------------------------------------------------------------

    // get the type of the A matrix
    GrB_Type etype ;
    char typename [LAGRAPH_MAX_NAME_LEN] ;
    LG_TRY (LAGraph_Matrix_TypeName (typename, A, msg)) ;
    LG_TRY (LAGraph_TypeFromName (&etype, typename, msg)) ;

    GRB_TRY (GrB_Scalar_new (&lBound, etype)) ;
    GRB_TRY (GrB_Scalar_new (&uBound, etype)) ;
    GRB_TRY (GrB_Vector_new (&t, etype, n)) ;
    GRB_TRY (GrB_Vector_new (&tmasked, etype, n)) ;
    GRB_TRY (GrB_Vector_new (&tReq, etype, n)) ;
    GRB_TRY (GrB_Vector_new (&Empty, GrB_BOOL, n)) ;
    GRB_TRY (GrB_Vector_new (&tless, GrB_BOOL, n)) ;
    GRB_TRY (GrB_Vector_new (&s, GrB_BOOL, n)) ;
    GRB_TRY (GrB_Vector_new (&reach, GrB_BOOL, n)) ;

    // optional hints for SuiteSparse:GraphBLAS
    GRB_TRY (LG_SET_FORMAT_HINT (t, LG_BITMAP)) ;
    GRB_TRY (LG_SET_FORMAT_HINT (tmasked, LG_SPARSE)) ;
    GRB_TRY (LG_SET_FORMAT_HINT (tReq, LG_SPARSE)) ;
    GRB_TRY (LG_SET_FORMAT_HINT (tless, LG_SPARSE)) ;
    GRB_TRY (LG_SET_FORMAT_HINT (s, LG_SPARSE)) ;
    GRB_TRY (LG_SET_FORMAT_HINT (reach, LG_BITMAP)) ;

    // select the operators, and set t (:) = infinity
    GrB_IndexUnaryOp ne, le, ge, lt, gt ;
    GrB_BinaryOp less_than ;
    GrB_Semiring min_plus ;
    int tcode ;
    int32_t  delta_int32  ;
    int64_t  delta_int64  ;
    uint32_t delta_uint32 ;
    uint64_t delta_uint64 ;
    float    delta_fp32   ;
    double   delta_fp64   ;

    bool negative_edge_weights = true ;

    if (etype == GrB_INT32)
    {
        GRB_TRY (GrB_Scalar_extractElement (&delta_int32, Delta)) ;
        GRB_TRY (GrB_assign (t, NULL, NULL, (int32_t) INT32_MAX,
            GrB_ALL, n, NULL)) ;
        le = GrB_VALUELE_INT32 ;
        ge = GrB_VALUEGE_INT32 ;
        lt = GrB_VALUELT_INT32 ;
        gt = GrB_VALUEGT_INT32 ;
        less_than = GrB_LT_INT32 ;
        min_plus = GrB_MIN_PLUS_SEMIRING_INT32 ;
        tcode = 0 ;
    }
    else if (etype == GrB_INT64)
    {
        GRB_TRY (GrB_Scalar_extractElement (&delta_int64, Delta)) ;
        GRB_TRY (GrB_assign (t, NULL, NULL, (int64_t) INT64_MAX,
            GrB_ALL, n, NULL)) ;
        le = GrB_VALUELE_INT64 ;
        ge = GrB_VALUEGE_INT64 ;
        lt = GrB_VALUELT_INT64 ;
        gt = GrB_VALUEGT_INT64 ;
        less_than = GrB_LT_INT64 ;
        min_plus = GrB_MIN_PLUS_SEMIRING_INT64 ;
        tcode = 1 ;
    }
    else if (etype == GrB_UINT32)
    {
        GRB_TRY (GrB_Scalar_extractElement (&delta_uint32, Delta)) ;
        GRB_TRY (GrB_assign (t, NULL, NULL, (uint32_t) UINT32_MAX,
            GrB_ALL, n, NULL)) ;
        le = GrB_VALUELE_UINT32 ;
        ge = GrB_VALUEGE_UINT32 ;
        lt = GrB_VALUELT_UINT32 ;
        gt = GrB_VALUEGT_UINT32 ;
        less_than = GrB_LT_UINT32 ;
        min_plus = GrB_MIN_PLUS_SEMIRING_UINT32 ;
        tcode = 2 ;
        negative_edge_weights = false ;
    }
    else if (etype == GrB_UINT64)
    {
        GRB_TRY (GrB_Scalar_extractElement (&delta_uint64, Delta)) ;
        GRB_TRY (GrB_assign (t, NULL, NULL, (uint64_t) UINT64_MAX,
            GrB_ALL, n, NULL)) ;
        le = GrB_VALUELE_UINT64 ;
        ge = GrB_VALUEGE_UINT64 ;
        lt = GrB_VALUELT_UINT64 ;
        gt = GrB_VALUEGT_UINT64 ;
        less_than = GrB_LT_UINT64 ;
        min_plus = GrB_MIN_PLUS_SEMIRING_UINT64 ;
        tcode = 3 ;
        negative_edge_weights = false ;
    }
    else if (etype == GrB_FP32)
    {
        GRB_TRY (GrB_Scalar_extractElement (&delta_fp32, Delta)) ;
        GRB_TRY (GrB_assign (t, NULL, NULL, (float) INFINITY,
            GrB_ALL, n, NULL)) ;
        le = GrB_VALUELE_FP32 ;
        ge = GrB_VALUEGE_FP32 ;
        lt = GrB_VALUELT_FP32 ;
        gt = GrB_VALUEGT_FP32 ;
        less_than = GrB_LT_FP32 ;
        min_plus = GrB_MIN_PLUS_SEMIRING_FP32 ;
        tcode = 4 ;
    }
    else if (etype == GrB_FP64)
    {
        GRB_TRY (GrB_Scalar_extractElement (&delta_fp64, Delta)) ;
        GRB_TRY (GrB_assign (t, NULL, NULL, (double) INFINITY,
            GrB_ALL, n, NULL)) ;
        le = GrB_VALUELE_FP64 ;
        ge = GrB_VALUEGE_FP64 ;
        lt = GrB_VALUELT_FP64 ;
        gt = GrB_VALUEGT_FP64 ;
        less_than = GrB_LT_FP64 ;
        min_plus = GrB_MIN_PLUS_SEMIRING_FP64 ;
        tcode = 5 ;
    }
    else
    {
        LG_ASSERT_MSG (false, GrB_NOT_IMPLEMENTED, "type not supported") ;
    }

    // check if the graph might have negative edge weights
    if (negative_edge_weights)
    {
        double emin = -1 ;
        if (G->emin != NULL &&
            (G->emin_state == LAGraph_VALUE ||
             G->emin_state == LAGraph_BOUND))
        {
            GRB_TRY (GrB_Scalar_extractElement_FP64 (&emin, G->emin)) ;
        }
//      else
//      {
//          // a future Basic algorithm should compute G->emin and perhaps
//          // G->emax, then compute Delta automatically.
//      }
        negative_edge_weights = (emin < 0) ;
    }

    // t (src) = 0
    GRB_TRY (GrB_Vector_setElement (t, 0, source)) ;

    // reach (src) = true
    GRB_TRY (GrB_Vector_setElement (reach, true, source)) ;

    // s (src) = true
    GRB_TRY (GrB_Vector_setElement (s, true, source)) ;

    // AL = A .* (A <= Delta)
    GRB_TRY (GrB_Matrix_new (&AL, etype, n, n)) ;
    GRB_TRY (GrB_select (AL, NULL, NULL, le, A, Delta, NULL)) ;
    GRB_TRY (GrB_wait (AL, GrB_MATERIALIZE)) ;

    // FUTURE: costly for some problems, taking up to 50% of the total time:
    // AH = A .* (A > Delta)
    GRB_TRY (GrB_Matrix_new (&AH, etype, n, n)) ;
    GRB_TRY (GrB_select (AH, NULL, NULL, gt, A, Delta, NULL)) ;
    GRB_TRY (GrB_wait (AH, GrB_MATERIALIZE)) ;

    //--------------------------------------------------------------------------
    // while (t >= step*Delta) not empty
    //--------------------------------------------------------------------------

    for (int64_t step = 0 ; ; step++)
    {

        //----------------------------------------------------------------------
        // tmasked = all entries in t<reach> that are less than (step+1)*Delta
        //----------------------------------------------------------------------

        setelement (uBound, (step+1)) ;        // uBound = (step+1) * Delta
        GRB_TRY (GrB_Vector_clear (tmasked)) ;

        // tmasked<reach> = t
        // FUTURE: this is costly, typically using Method 06s in SuiteSparse,
        // which is a very general-purpose one.  Write a specialized kernel to
        // exploit the fact that reach and t are bitmap and tmasked starts
        // empty, or fuse this assignment with the GrB_select below.
        GRB_TRY (GrB_assign (tmasked, reach, NULL, t, GrB_ALL, n, NULL)) ;
        // tmasked = select (tmasked < (step+1)*Delta)
        GRB_TRY (GrB_select (tmasked, NULL, NULL, lt, tmasked, uBound, NULL)) ;
        // --- alternative:
        // FUTURE this is slower than the above but should be much faster.
        // GrB_select is computing a bitmap result then converting it to
        // sparse.  t and reach are both bitmap and tmasked finally sparse.
        // tmasked<reach> = select (t < (step+1)*Delta)
        // GRB_TRY (GrB_select (tmasked, reach, NULL, lt, t, uBound, NULL)) ;

        GrB_Index tmasked_nvals ;
        GRB_TRY (GrB_Vector_nvals (&tmasked_nvals, tmasked)) ;

        //----------------------------------------------------------------------
        // continue while the current bucket (tmasked) is not empty
        //----------------------------------------------------------------------

        while (tmasked_nvals > 0)
        {
            // tReq = AL'*tmasked using the min_plus semiring
            GRB_TRY (GrB_vxm (tReq, NULL, NULL, min_plus, tmasked, AL, NULL)) ;

            // s<struct(tmasked)> = true
            GRB_TRY (GrB_assign (s, tmasked, NULL, (bool) true, GrB_ALL, n,
                GrB_DESC_S)) ;

            // if nvals (tReq) is 0, no need to continue the rest of this loop
            GrB_Index tReq_nvals ;
            GRB_TRY (GrB_Vector_nvals (&tReq_nvals, tReq)) ;
            if (tReq_nvals == 0) break ;

            // tless = (tReq .< t) using set intersection
            GRB_TRY (GrB_eWiseMult (tless, NULL, NULL, less_than, tReq, t,
                NULL)) ;

            // remove explicit zeros from tless so it can be used as a
            // structural mask
            GrB_Index tless_nvals ;
            GRB_TRY (GrB_select (tless, NULL, NULL, GrB_VALUENE_BOOL,
                tless, false, NULL)) ;
            GRB_TRY (GrB_Vector_nvals (&tless_nvals, tless)) ;
            if (tless_nvals == 0) break ;

            // update reachable node list/mask
            // reach<struct(tless)> = true
            GRB_TRY (GrB_assign (reach, tless, NULL, (bool) true, GrB_ALL, n,
                GrB_DESC_S)) ;

            // tmasked<struct(tless)> = select (tReq < (step+1)*Delta)
            GRB_TRY (GrB_Vector_clear (tmasked)) ;
            GRB_TRY (GrB_select (tmasked, tless, NULL, lt, tReq, uBound,
                GrB_DESC_S)) ;

            // For general graph with some negative weights:
            if (negative_edge_weights)
            {
                // If all entries of the graph are known to be positive, and
                // the entries of tmasked are at least step*Delta, tReq =
                // tmasked min.+ AL must be >= step*Delta.  Therefore, there is
                // no need to perform this GrB_select with ge to find tmasked
                // >= step*Delta from tReq.
                setelement (lBound, (step)) ;  // lBound = step*Delta
                // tmasked = select entries in tmasked that are >= step*Delta
                GRB_TRY (GrB_select (tmasked, NULL, NULL, ge, tmasked, lBound,
                    NULL)) ;
            }

            // t<struct(tless)> = tReq
            GRB_TRY (GrB_assign (t, tless, NULL, tReq, GrB_ALL, n, GrB_DESC_S));
            GRB_TRY (GrB_Vector_nvals (&tmasked_nvals, tmasked)) ;
        }

        // tmasked<s> = t
        GRB_TRY (GrB_Vector_clear (tmasked)) ;
        GRB_TRY (GrB_assign (tmasked, s, NULL, t, GrB_ALL, n, GrB_DESC_S)) ;

        // tReq = AH'*tmasked using the min_plus semiring
        GRB_TRY (GrB_vxm (tReq, NULL, NULL, min_plus, tmasked, AH, NULL)) ;

        // tless = (tReq .< t) using set intersection
        GRB_TRY (GrB_eWiseMult (tless, NULL, NULL, less_than, tReq, t, NULL)) ;

        // t<tless> = tReq, which computes t = min (t, tReq)
        GRB_TRY (GrB_assign (t, tless, NULL, tReq, GrB_ALL, n, NULL)) ;

        //----------------------------------------------------------------------
        // find out how many left to be computed
        //----------------------------------------------------------------------

        // update reachable node list
        // reach<tless> = true
        GRB_TRY (GrB_assign (reach, tless, NULL, (bool) true, GrB_ALL, n,
            NULL)) ;

        // remove previous buckets
        // reach<struct(s)> = Empty
        GRB_TRY (GrB_assign (reach, s, NULL, Empty, GrB_ALL, n, GrB_DESC_S)) ;
        GrB_Index nreach ;
        GRB_TRY (GrB_Vector_nvals (&nreach, reach)) ;
        if (nreach == 0) break ;

        GRB_TRY (GrB_Vector_clear (s)) ; // clear s for the next iteration
    }

    //--------------------------------------------------------------------------
    // free workspace and return result
    //--------------------------------------------------------------------------

    (*path_length) = t ;
    LG_FREE_WORK ;
    return (GrB_SUCCESS) ;
}