paraseq 0.4.13

A minimal-copy parser for FASTA and FASTQ files built for paired parallel processing.
Documentation 
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# THIS FILE IS AUTOMATICALLY GENERATED BY CARGO
#
# When uploading crates to the registry Cargo will automatically
# "normalize" Cargo.toml files for maximal compatibility
# with all versions of Cargo and also rewrite `path` dependencies
# to registry (e.g., crates.io) dependencies.
#
# If you are reading this file be aware that the original Cargo.toml
# will likely look very different (and much more reasonable).
# See Cargo.toml.orig for the original contents.

[package]
edition = "2021"
name = "paraseq"
version = "0.4.13"
authors = ["Noam Teyssier"]
build = false
autolib = false
autobins = false
autoexamples = false
autotests = false
autobenches = false
description = "A minimal-copy parser for FASTA and FASTQ files built for paired parallel processing."
documentation = "https://docs.rs/paraseq"
readme = "README.md"
keywords = [
    "fasta",
    "fastq",
    "parser",
    "parallel",
    "paired",
]
license = "MIT"
repository = "https://github.com/noamteyssier/paraseq"

[features]
anyhow = ["dep:anyhow"]
default = [
    "anyhow",
    "niffler",
    "niffler/default",
]
gcs = ["dep:which"]
htslib = ["dep:rust-htslib"]
niffler = ["dep:niffler"]
ssh = ["dep:which"]
url = [
    "dep:reqwest",
    "dep:niffler",
]

[lib]
name = "paraseq"
path = "src/lib.rs"

[[example]]
name = "collection"
path = "examples/collection.rs"

[[example]]
name = "fastx"
path = "examples/fastx.rs"

[[example]]
name = "gcs"
path = "examples/gcs.rs"

[[example]]
name = "htslib"
path = "examples/htslib.rs"

[[example]]
name = "interleaved"
path = "examples/interleaved.rs"

[[example]]
name = "multi_interleaved"
path = "examples/multi_interleaved.rs"

[[example]]
name = "multi_parallel"
path = "examples/multi_parallel.rs"

[[example]]
name = "multiline_fasta"
path = "examples/multiline_fasta.rs"

[[example]]
name = "naive"
path = "examples/naive.rs"

[[example]]
name = "paired_parallel"
path = "examples/paired_parallel.rs"

[[example]]
name = "parallel"
path = "examples/parallel.rs"

[[example]]
name = "parallel_closure"
path = "examples/parallel_closure.rs"

[[example]]
name = "range_parallel"
path = "examples/range_parallel.rs"

[[example]]
name = "read_write"
path = "examples/read_write.rs"

[[example]]
name = "reloading"
path = "examples/reloading.rs"

[[example]]
name = "reloading_parallel"
path = "examples/reloading_parallel.rs"

[[example]]
name = "ssh"
path = "examples/ssh.rs"

[[example]]
name = "url"
path = "examples/url.rs"

[dependencies.anyhow]
version = "1.0.95"
optional = true

[dependencies.crossbeam-channel]
version = "0.5.14"

[dependencies.either]
version = "1.15.0"

[dependencies.env_logger]
version = "0.11.8"

[dependencies.itertools]
version = "0.14.0"

[dependencies.log]
version = "0.4.29"

[dependencies.memchr]
version = "2.7.4"

[dependencies.niffler]
version = "3.0.0"
optional = true
default-features = false

[dependencies.num_cpus]
version = "1.17.0"

[dependencies.parking_lot]
version = "0.12.3"

[dependencies.reqwest]
version = "0.12.22"
features = ["blocking"]
optional = true

[dependencies.rust-htslib]
version = "0.49.0"
optional = true
default-features = false

[dependencies.smallvec]
version = "1.15.1"

[dependencies.thiserror]
version = "2.0.11"

[dependencies.which]
version = "8.0.0"
optional = true

[dev-dependencies.clap]
version = "4.5.40"
features = ["derive"]

[dev-dependencies.niffler]
version = "3.0.0"