pai-rs 0.0.1

Precise Assessment of Indels in Rust (pairs) is a tool for detecting insertion/deletion/substituion (indels) events following CRISPR.

Documentation

Coverage
0%
0 out of 11 items documented0 out of 7 items with examples
Ø build duration
all releases: 24s Average build duration of successful builds in releases after 2024-10-23.
Links
Repository
crates.io
Dependencies
- clap ^4.5.7 normal
- thiserror ^1.0 normal
Versions
- 0.0.2 (2024-09-24)
- 0.0.1 (2024-09-23)
Owners

pai-rs-0.0.1 has been yanked.

Pairs

Precise Assessment of Indels in Rust (pairs) is a tool for detecting insertion/deletion/substituion (indels) events in DNA sequences following CRISPR treatments. It operates on short read, deep sequence data. It is designed to be fast while maintaining a high degree of accuracy. To achieve this, it uses a hybrid combination of a custom implementation of the Prefixed Index Counting (PIC) algorithm introduced by Lee et al., 2020 and the Block Aligner introduced by Liu and Steinegger, 2023.

Installation

Not there yet. To test at this stage, install rustup, clone the repository and run make compile/debug.