packed-seq 4.4.2

Constructing and iterating packed DNA sequences using SIMD
Documentation 
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#![allow(unused)]

use wide::u32x4;
use wide::u32x8 as S;

/// Transpose an 8x8 matrix of 8 `u32x8` SIMD elements.
/// <https://stackoverflow.com/questions/25622745/transpose-an-8x8-float-using-avx-avx2>
// TODO: Investigate other transpose functions mentioned there?
#[inline(always)]
pub fn transpose(m: [S; 8]) -> [S; 8] {
    _transpose(m)
}

/// A utility function for creating masks to use with Intel shuffle and
/// permute intrinsics.
///
/// Copied from the standard library, since it is unstable.
#[inline(always)]
const fn _mm_shuffle(z: u32, y: u32, x: u32, w: u32) -> i32 {
    ((z << 6) | (y << 4) | (x << 2) | w) as i32
}

// NOTE: AVX is sufficient here. AVX2 is not needed.
#[inline(always)]
#[cfg(target_feature = "avx")]
fn _transpose(m: [S; 8]) -> [S; 8] {
    unsafe {
        #[cfg(target_arch = "x86")]
        use core::arch::x86::*;
        #[cfg(target_arch = "x86_64")]
        use core::arch::x86_64::*;
        use core::mem::transmute;

        let m: [__m256; 8] = transmute(m);
        let x0 = _mm256_unpacklo_ps(m[0], m[1]);
        let x1 = _mm256_unpackhi_ps(m[0], m[1]);
        let x2 = _mm256_unpacklo_ps(m[2], m[3]);
        let x3 = _mm256_unpackhi_ps(m[2], m[3]);
        let x4 = _mm256_unpacklo_ps(m[4], m[5]);
        let x5 = _mm256_unpackhi_ps(m[4], m[5]);
        let x6 = _mm256_unpacklo_ps(m[6], m[7]);
        let x7 = _mm256_unpackhi_ps(m[6], m[7]);
        let y0 = _mm256_shuffle_ps(x0, x2, _mm_shuffle(1, 0, 1, 0));
        let y1 = _mm256_shuffle_ps(x0, x2, _mm_shuffle(3, 2, 3, 2));
        let y2 = _mm256_shuffle_ps(x1, x3, _mm_shuffle(1, 0, 1, 0));
        let y3 = _mm256_shuffle_ps(x1, x3, _mm_shuffle(3, 2, 3, 2));
        let y4 = _mm256_shuffle_ps(x4, x6, _mm_shuffle(1, 0, 1, 0));
        let y5 = _mm256_shuffle_ps(x4, x6, _mm_shuffle(3, 2, 3, 2));
        let y6 = _mm256_shuffle_ps(x5, x7, _mm_shuffle(1, 0, 1, 0));
        let y7 = _mm256_shuffle_ps(x5, x7, _mm_shuffle(3, 2, 3, 2));
        let mut t: [__m256; 8] = [transmute([0; 8]); 8];
        t[0] = _mm256_permute2f128_ps(y0, y4, 0x20);
        t[1] = _mm256_permute2f128_ps(y1, y5, 0x20);
        t[2] = _mm256_permute2f128_ps(y2, y6, 0x20);
        t[3] = _mm256_permute2f128_ps(y3, y7, 0x20);
        t[4] = _mm256_permute2f128_ps(y0, y4, 0x31);
        t[5] = _mm256_permute2f128_ps(y1, y5, 0x31);
        t[6] = _mm256_permute2f128_ps(y2, y6, 0x31);
        t[7] = _mm256_permute2f128_ps(y3, y7, 0x31);
        transmute(t)
    }
}

#[inline(always)]
#[cfg(target_feature = "neon")]
fn _transpose(m: [S; 8]) -> [S; 8] {
    unsafe {
        use core::mem::transmute;

        let m: [u32x4; 16] = transmute(m);
        let t11 = transpose_4x4_neon(
            *m.get_unchecked(0),
            *m.get_unchecked(2),
            *m.get_unchecked(4),
            *m.get_unchecked(6),
        );
        let t21 = transpose_4x4_neon(
            *m.get_unchecked(1),
            *m.get_unchecked(3),
            *m.get_unchecked(5),
            *m.get_unchecked(7),
        );
        let t12 = transpose_4x4_neon(
            *m.get_unchecked(8),
            *m.get_unchecked(10),
            *m.get_unchecked(12),
            *m.get_unchecked(14),
        );
        let t22 = transpose_4x4_neon(
            *m.get_unchecked(9),
            *m.get_unchecked(11),
            *m.get_unchecked(13),
            *m.get_unchecked(15),
        );

        transmute((
            *t11.get_unchecked(0),
            *t12.get_unchecked(0),
            *t11.get_unchecked(1),
            *t12.get_unchecked(1),
            *t11.get_unchecked(2),
            *t12.get_unchecked(2),
            *t11.get_unchecked(3),
            *t12.get_unchecked(3),
            *t21.get_unchecked(0),
            *t22.get_unchecked(0),
            *t21.get_unchecked(1),
            *t22.get_unchecked(1),
            *t21.get_unchecked(2),
            *t22.get_unchecked(2),
            *t21.get_unchecked(3),
            *t22.get_unchecked(3),
        ))
    }
}

#[inline(always)]
#[cfg(target_feature = "neon")]
fn transpose_4x4_neon(m0: u32x4, m1: u32x4, m2: u32x4, m3: u32x4) -> [u32x4; 4] {
    unsafe {
        use core::arch::aarch64::vzipq_u32;
        use core::mem::transmute;

        let x = vzipq_u32(transmute(m0), transmute(m2));
        let y = vzipq_u32(transmute(m1), transmute(m3));
        transmute((vzipq_u32(x.0, y.0), vzipq_u32(x.1, y.1)))
    }
}

#[inline(always)]
#[cfg(not(any(target_feature = "avx", target_feature = "neon")))]
fn _transpose(m: [S; 8]) -> [S; 8] {
    unsafe {
        let m = m.map(|v| v.to_array());
        [0, 1, 2, 3, 4, 5, 6, 7].map(|i| S::new(m.map(|v| *v.get_unchecked(i))))
    }
}

#[cfg(test)]
mod tests {
    use super::*;

    #[test]
    fn test_transpose() {
        let m = [
            S::new([0, 1, 2, 3, 4, 5, 6, 7]),
            S::new([10, 11, 12, 13, 14, 15, 16, 17]),
            S::new([20, 21, 22, 23, 24, 25, 26, 27]),
            S::new([30, 31, 32, 33, 34, 35, 36, 37]),
            S::new([40, 41, 42, 43, 44, 45, 46, 47]),
            S::new([50, 51, 52, 53, 54, 55, 56, 57]),
            S::new([60, 61, 62, 63, 64, 65, 66, 67]),
            S::new([70, 71, 72, 73, 74, 75, 76, 77]),
        ];

        let mt = [
            S::new([0, 10, 20, 30, 40, 50, 60, 70]),
            S::new([1, 11, 21, 31, 41, 51, 61, 71]),
            S::new([2, 12, 22, 32, 42, 52, 62, 72]),
            S::new([3, 13, 23, 33, 43, 53, 63, 73]),
            S::new([4, 14, 24, 34, 44, 54, 64, 74]),
            S::new([5, 15, 25, 35, 45, 55, 65, 75]),
            S::new([6, 16, 26, 36, 46, 56, 66, 76]),
            S::new([7, 17, 27, 37, 47, 57, 67, 77]),
        ];

        assert_eq!(transpose(m), mt);
    }
}