tool,scenario_id,desc_id,desc_type,description
admixture,admixture_01,admixture_01_01,original,run ADMIXTURE for K=5 ancestral populations
admixture,admixture_01,admixture_01_02,beginner,How do I run ADMIXTURE for K=5 ancestral populations?
admixture,admixture_01,admixture_01_03,student,I need to run ADMIXTURE for K=5 ancestral populations
admixture,admixture_01,admixture_01_04,polite,Please run ADMIXTURE for K=5 ancestral populations
admixture,admixture_01,admixture_01_05,sysadmin,Use admixture to run ADMIXTURE for K=5 ancestral populations
admixture,admixture_01,admixture_01_06,goal_oriented,I want to run ADMIXTURE for K=5 ancestral populations
admixture,admixture_01,admixture_01_07,expert,run ADMIXTURE K=5 ancestral populations
admixture,admixture_01,admixture_01_08,detailed,I have data that I need to process: run ADMIXTURE for K=5 ancestral populations
admixture,admixture_01,admixture_01_09,informal,"Hey, can you help me run ADMIXTURE for K=5 ancestral populations?"
admixture,admixture_01,admixture_01_10,alternative,Perform: run ADMIXTURE for K=5 ancestral populations
admixture,admixture_02,admixture_02_01,original,run ADMIXTURE with reproducible seed
admixture,admixture_02,admixture_02_02,beginner,How do I run ADMIXTURE with reproducible seed?
admixture,admixture_02,admixture_02_03,student,I need to run ADMIXTURE with reproducible seed
admixture,admixture_02,admixture_02_04,polite,Please run ADMIXTURE with reproducible seed
admixture,admixture_02,admixture_02_05,sysadmin,Use admixture to run ADMIXTURE with reproducible seed
admixture,admixture_02,admixture_02_06,goal_oriented,I want to run ADMIXTURE with reproducible seed
admixture,admixture_02,admixture_02_07,expert,run ADMIXTURE reproducible seed
admixture,admixture_02,admixture_02_08,detailed,I have data that I need to process: run ADMIXTURE with reproducible seed
admixture,admixture_02,admixture_02_09,informal,"Hey, can you help me run ADMIXTURE with reproducible seed?"
admixture,admixture_02,admixture_02_10,alternative,"With reproducible seed, run ADMIXTURE"
admixture,admixture_03,admixture_03_01,original,run supervised ADMIXTURE with known reference populations
admixture,admixture_03,admixture_03_02,beginner,How do I run supervised ADMIXTURE with known reference populations?
admixture,admixture_03,admixture_03_03,student,I need to run supervised ADMIXTURE with known reference populations
admixture,admixture_03,admixture_03_04,polite,Please run supervised ADMIXTURE with known reference populations
admixture,admixture_03,admixture_03_05,sysadmin,Use admixture to run supervised ADMIXTURE with known reference populations
admixture,admixture_03,admixture_03_06,goal_oriented,I want to run supervised ADMIXTURE with known reference populations
admixture,admixture_03,admixture_03_07,expert,run supervised ADMIXTURE known reference populations
admixture,admixture_03,admixture_03_08,detailed,I have data that I need to process: run supervised ADMIXTURE with known reference populations
admixture,admixture_03,admixture_03_09,informal,"Hey, can you help me run supervised ADMIXTURE with known reference populations?"
admixture,admixture_03,admixture_03_10,alternative,"With known reference populations, run supervised ADMIXTURE"
admixture,admixture_04,admixture_04_01,original,run ADMIXTURE across multiple K values (shell loop)
admixture,admixture_04,admixture_04_02,beginner,How do I run ADMIXTURE across multiple K values (shell loop)?
admixture,admixture_04,admixture_04_03,student,I need to run ADMIXTURE across multiple K values (shell loop)
admixture,admixture_04,admixture_04_04,polite,Please run ADMIXTURE across multiple K values (shell loop)
admixture,admixture_04,admixture_04_05,sysadmin,Use admixture to run ADMIXTURE across multiple K values (shell loop)
admixture,admixture_04,admixture_04_06,goal_oriented,I want to run ADMIXTURE across multiple K values (shell loop)
admixture,admixture_04,admixture_04_07,expert,run ADMIXTURE across multiple K values (shell loop)
admixture,admixture_04,admixture_04_08,detailed,I have data that I need to process: run ADMIXTURE across multiple K values (shell loop)
admixture,admixture_04,admixture_04_09,informal,"Hey, can you help me run ADMIXTURE across multiple K values (shell loop)?"
admixture,admixture_04,admixture_04_10,alternative,Perform: run ADMIXTURE across multiple K values (shell loop)
admixture,admixture_05,admixture_05_01,original,run ADMIXTURE with 100 bootstrap replicates for standard errors
admixture,admixture_05,admixture_05_02,beginner,How do I run ADMIXTURE with 100 bootstrap replicates for standard errors?
admixture,admixture_05,admixture_05_03,student,I need to run ADMIXTURE with 100 bootstrap replicates for standard errors
admixture,admixture_05,admixture_05_04,polite,Please run ADMIXTURE with 100 bootstrap replicates for standard errors
admixture,admixture_05,admixture_05_05,sysadmin,Use admixture to run ADMIXTURE with 100 bootstrap replicates for standard errors
admixture,admixture_05,admixture_05_06,goal_oriented,I want to run ADMIXTURE with 100 bootstrap replicates for standard errors
admixture,admixture_05,admixture_05_07,expert,run ADMIXTURE 100 bootstrap replicates standard errors
admixture,admixture_05,admixture_05_08,detailed,I have data that I need to process: run ADMIXTURE with 100 bootstrap replicates for standard errors
admixture,admixture_05,admixture_05_09,informal,"Hey, can you help me run ADMIXTURE with 100 bootstrap replicates for standard errors?"
admixture,admixture_05,admixture_05_10,alternative,"With 100 bootstrap replicates for standard errors, run ADMIXTURE"
admixture,admixture_06,admixture_06_01,original,run projection analysis onto a fixed P-matrix
admixture,admixture_06,admixture_06_02,beginner,How do I run projection analysis onto a fixed P-matrix?
admixture,admixture_06,admixture_06_03,student,I need to run projection analysis onto a fixed P-matrix
admixture,admixture_06,admixture_06_04,polite,Please run projection analysis onto a fixed P-matrix
admixture,admixture_06,admixture_06_05,sysadmin,Use admixture to run projection analysis onto a fixed P-matrix
admixture,admixture_06,admixture_06_06,goal_oriented,I want to run projection analysis onto a fixed P-matrix
admixture,admixture_06,admixture_06_07,expert,run projection analysis onto fixed P-matrix
admixture,admixture_06,admixture_06_08,detailed,I have data that I need to process: run projection analysis onto a fixed P-matrix
admixture,admixture_06,admixture_06_09,informal,"Hey, can you help me run projection analysis onto a fixed P-matrix?"
admixture,admixture_06,admixture_06_10,alternative,Perform: run projection analysis onto a fixed P-matrix
admixture,admixture_07,admixture_07_01,original,run multiple replicates for K=4 with different seeds to check convergence
admixture,admixture_07,admixture_07_02,beginner,How do I run multiple replicates for K=4 with different seeds to check convergence?
admixture,admixture_07,admixture_07_03,student,I need to run multiple replicates for K=4 with different seeds to check convergence
admixture,admixture_07,admixture_07_04,polite,Please run multiple replicates for K=4 with different seeds to check convergence
admixture,admixture_07,admixture_07_05,sysadmin,Use admixture to run multiple replicates for K=4 with different seeds to check convergence
admixture,admixture_07,admixture_07_06,goal_oriented,I want to run multiple replicates for K=4 with different seeds to check convergence
admixture,admixture_07,admixture_07_07,expert,run multiple replicates K=4 different seeds check convergence
admixture,admixture_07,admixture_07_08,detailed,I have data that I need to process: run multiple replicates for K=4 with different seeds to check convergence
admixture,admixture_07,admixture_07_09,informal,"Hey, can you help me run multiple replicates for K=4 with different seeds to check convergence?"
admixture,admixture_07,admixture_07_10,alternative,"With different seeds to check convergence, run multiple replicates for K=4"
admixture,admixture_08,admixture_08_01,original,compare cross-validation errors across K values
admixture,admixture_08,admixture_08_02,beginner,How do I compare cross-validation errors across K values?
admixture,admixture_08,admixture_08_03,student,I need to compare cross-validation errors across K values
admixture,admixture_08,admixture_08_04,polite,Please compare cross-validation errors across K values
admixture,admixture_08,admixture_08_05,sysadmin,Use admixture to compare cross-validation errors across K values
admixture,admixture_08,admixture_08_06,goal_oriented,I want to compare cross-validation errors across K values
admixture,admixture_08,admixture_08_07,expert,compare cross-validation errors across K values
admixture,admixture_08,admixture_08_08,detailed,I have data that I need to process: compare cross-validation errors across K values
admixture,admixture_08,admixture_08_09,informal,"Hey, can you help me compare cross-validation errors across K values?"
admixture,admixture_08,admixture_08_10,alternative,Perform: compare cross-validation errors across K values
admixture,admixture_09,admixture_09_01,original,filter for minor allele frequency before running ADMIXTURE
admixture,admixture_09,admixture_09_02,beginner,How do I filter for minor allele frequency before running ADMIXTURE?
admixture,admixture_09,admixture_09_03,student,I need to filter for minor allele frequency before running ADMIXTURE
admixture,admixture_09,admixture_09_04,polite,Please filter for minor allele frequency before running ADMIXTURE
admixture,admixture_09,admixture_09_05,sysadmin,Use admixture to filter for minor allele frequency before running ADMIXTURE
admixture,admixture_09,admixture_09_06,goal_oriented,I want to filter for minor allele frequency before running ADMIXTURE
admixture,admixture_09,admixture_09_07,expert,filter minor allele frequency before running ADMIXTURE
admixture,admixture_09,admixture_09_08,detailed,I have data that I need to process: filter for minor allele frequency before running ADMIXTURE
admixture,admixture_09,admixture_09_09,informal,"Hey, can you help me filter for minor allele frequency before running ADMIXTURE?"
admixture,admixture_09,admixture_09_10,alternative,Perform: filter for minor allele frequency before running ADMIXTURE
admixture,admixture_10,admixture_10_01,original,run ADMIXTURE with accelerated EM for faster convergence
admixture,admixture_10,admixture_10_02,beginner,How do I run ADMIXTURE with accelerated EM for faster convergence?
admixture,admixture_10,admixture_10_03,student,I need to run ADMIXTURE with accelerated EM for faster convergence
admixture,admixture_10,admixture_10_04,polite,Please run ADMIXTURE with accelerated EM for faster convergence
admixture,admixture_10,admixture_10_05,sysadmin,Use admixture to run ADMIXTURE with accelerated EM for faster convergence
admixture,admixture_10,admixture_10_06,goal_oriented,I want to run ADMIXTURE with accelerated EM for faster convergence
admixture,admixture_10,admixture_10_07,expert,run ADMIXTURE accelerated EM faster convergence
admixture,admixture_10,admixture_10_08,detailed,I have data that I need to process: run ADMIXTURE with accelerated EM for faster convergence
admixture,admixture_10,admixture_10_09,informal,"Hey, can you help me run ADMIXTURE with accelerated EM for faster convergence?"
admixture,admixture_10,admixture_10_10,alternative,"With accelerated EM for faster convergence, run ADMIXTURE"
agat,agat_01,agat_01_01,original,convert GFF3 to GTF format
agat,agat_01,agat_01_02,beginner,How do I convert GFF3 to GTF format?
agat,agat_01,agat_01_03,student,I need to convert GFF3 to GTF format
agat,agat_01,agat_01_04,polite,Please convert GFF3 to GTF format
agat,agat_01,agat_01_05,sysadmin,Use agat to convert GFF3 to GTF format
agat,agat_01,agat_01_06,goal_oriented,I want to convert GFF3 to GTF format
agat,agat_01,agat_01_07,expert,convert GFF3 GTF format
agat,agat_01,agat_01_08,detailed,"I have data that I need to process: convert GFF3 to GTF format, saving the result to a specified output file"
agat,agat_01,agat_01_09,informal,"Hey, can you help me convert GFF3 to GTF format?"
agat,agat_01,agat_01_10,alternative,Output GTF format by performing: convert GFF3
agat,agat_02,agat_02_01,original,get annotation statistics from a GFF3 file
agat,agat_02,agat_02_02,beginner,How do I get annotation statistics from a GFF3 file?
agat,agat_02,agat_02_03,student,I need to get annotation statistics from a GFF3 file
agat,agat_02,agat_02_04,polite,Please get annotation statistics from a GFF3 file
agat,agat_02,agat_02_05,sysadmin,Use agat to get annotation statistics from a GFF3 file
agat,agat_02,agat_02_06,goal_oriented,I want to get annotation statistics from a GFF3 file
agat,agat_02,agat_02_07,expert,get annotation statistics GFF3 file
agat,agat_02,agat_02_08,detailed,"I have data that I need to process: get annotation statistics from a GFF3 file, saving the result to a specified output file"
agat,agat_02,agat_02_09,informal,"Hey, can you help me get annotation statistics from a GFF3 file?"
agat,agat_02,agat_02_10,alternative,Perform: get annotation statistics from a GFF3 file
agat,agat_03,agat_03_01,original,filter genes by minimum length
agat,agat_03,agat_03_02,beginner,How do I filter genes by minimum length?
agat,agat_03,agat_03_03,student,I need to filter genes by minimum length
agat,agat_03,agat_03_04,polite,Please filter genes by minimum length
agat,agat_03,agat_03_05,sysadmin,Use agat to filter genes by minimum length
agat,agat_03,agat_03_06,goal_oriented,I want to filter genes by minimum length
agat,agat_03,agat_03_07,expert,filter genes by minimum length
agat,agat_03,agat_03_08,detailed,"I have data that I need to process: filter genes by minimum length, saving the result to a specified output file"
agat,agat_03,agat_03_09,informal,"Hey, can you help me filter genes by minimum length?"
agat,agat_03,agat_03_10,alternative,Perform: filter genes by minimum length
agat,agat_04,agat_04_01,original,fix and standardize a malformed GFF3 file
agat,agat_04,agat_04_02,beginner,How do I fix and standardize a malformed GFF3 file?
agat,agat_04,agat_04_03,student,I need to fix and standardize a malformed GFF3 file
agat,agat_04,agat_04_04,polite,Please fix and standardize a malformed GFF3 file
agat,agat_04,agat_04_05,sysadmin,Use agat to fix and standardize a malformed GFF3 file
agat,agat_04,agat_04_06,goal_oriented,I want to fix and standardize a malformed GFF3 file
agat,agat_04,agat_04_07,expert,fix standardize malformed GFF3 file
agat,agat_04,agat_04_08,detailed,"I have data that I need to process: fix and standardize a malformed GFF3 file, saving the result to a specified output file"
agat,agat_04,agat_04_09,informal,"Hey, can you help me fix and standardize a malformed GFF3 file?"
agat,agat_04,agat_04_10,alternative,Standardize a malformed GFF3 file after fix
agat,agat_05,agat_05_01,original,convert GFF3 to GTF format with default parameters
agat,agat_05,agat_05_02,beginner,How do I convert GFF3 to GTF format with default parameters?
agat,agat_05,agat_05_03,student,I need to convert GFF3 to GTF format with default parameters
agat,agat_05,agat_05_04,polite,Please convert GFF3 to GTF format with default parameters
agat,agat_05,agat_05_05,sysadmin,Use agat to convert GFF3 to GTF format with default parameters
agat,agat_05,agat_05_06,goal_oriented,I want to convert GFF3 to GTF format with default parameters
agat,agat_05,agat_05_07,expert,convert GFF3 GTF format default parameters
agat,agat_05,agat_05_08,detailed,"I have data that I need to process: convert GFF3 to GTF format with default parameters, saving the result to a specified output file"
agat,agat_05,agat_05_09,informal,"Hey, can you help me convert GFF3 to GTF format with default parameters?"
agat,agat_05,agat_05_10,alternative,"With default parameters, convert GFF3 to GTF format"
agat,agat_06,agat_06_01,original,get annotation statistics from a GFF3 file with verbose output
agat,agat_06,agat_06_02,beginner,How do I get annotation statistics from a GFF3 file with verbose output?
agat,agat_06,agat_06_03,student,I need to get annotation statistics from a GFF3 file with verbose output
agat,agat_06,agat_06_04,polite,Please get annotation statistics from a GFF3 file with verbose output
agat,agat_06,agat_06_05,sysadmin,Use agat to get annotation statistics from a GFF3 file with verbose output
agat,agat_06,agat_06_06,goal_oriented,I want to get annotation statistics from a GFF3 file with verbose output
agat,agat_06,agat_06_07,expert,get annotation statistics GFF3 file verbose output
agat,agat_06,agat_06_08,detailed,"I have data that I need to process: get annotation statistics from a GFF3 file with verbose output, saving the result to a specified output file"
agat,agat_06,agat_06_09,informal,"Hey, can you help me get annotation statistics from a GFF3 file with verbose output?"
agat,agat_06,agat_06_10,alternative,"With verbose output, get annotation statistics from a GFF3 file"
agat,agat_07,agat_07_01,original,filter genes by minimum length using multiple threads
agat,agat_07,agat_07_02,beginner,How do I filter genes by minimum length using multiple threads?
agat,agat_07,agat_07_03,student,I need to filter genes by minimum length using multiple threads
agat,agat_07,agat_07_04,polite,Please filter genes by minimum length using multiple threads
agat,agat_07,agat_07_05,sysadmin,Use agat to filter genes by minimum length using multiple threads
agat,agat_07,agat_07_06,goal_oriented,I want to filter genes by minimum length using multiple threads
agat,agat_07,agat_07_07,expert,filter genes by minimum length multiple threads
agat,agat_07,agat_07_08,detailed,"I have data that I need to process: filter genes by minimum length using multiple threads, utilizing multiple CPU threads for speed, saving the result to a specified output file"
agat,agat_07,agat_07_09,informal,"Hey, can you help me filter genes by minimum length using multiple threads?"
agat,agat_07,agat_07_10,alternative,Perform: filter genes by minimum length using multiple threads
agat,agat_08,agat_08_01,original,fix and standardize a malformed GFF3 file and write output to a file
agat,agat_08,agat_08_02,beginner,How do I fix and standardize a malformed GFF3 file and write output to a file?
agat,agat_08,agat_08_03,student,I need to fix and standardize a malformed GFF3 file and write output to a file
agat,agat_08,agat_08_04,polite,Please fix and standardize a malformed GFF3 file and write output to a file
agat,agat_08,agat_08_05,sysadmin,Use agat to fix and standardize a malformed GFF3 file and write output to a file
agat,agat_08,agat_08_06,goal_oriented,I want to fix and standardize a malformed GFF3 file and write output to a file
agat,agat_08,agat_08_07,expert,fix standardize malformed GFF3 file write output file
agat,agat_08,agat_08_08,detailed,"I have data that I need to process: fix and standardize a malformed GFF3 file and write output to a file, saving the result to a specified output file"
agat,agat_08,agat_08_09,informal,"Hey, can you help me fix and standardize a malformed GFF3 file and write output to a file?"
agat,agat_08,agat_08_10,alternative,Standardize a malformed GFF3 file and write output to a file after fix
agat,agat_09,agat_09_01,original,convert GFF3 to GTF format in quiet mode
agat,agat_09,agat_09_02,beginner,How do I convert GFF3 to GTF format in quiet mode?
agat,agat_09,agat_09_03,student,I need to convert GFF3 to GTF format in quiet mode
agat,agat_09,agat_09_04,polite,Please convert GFF3 to GTF format in quiet mode
agat,agat_09,agat_09_05,sysadmin,Use agat to convert GFF3 to GTF format in quiet mode
agat,agat_09,agat_09_06,goal_oriented,I want to convert GFF3 to GTF format in quiet mode
agat,agat_09,agat_09_07,expert,convert GFF3 GTF format quiet mode
agat,agat_09,agat_09_08,detailed,"I have data that I need to process: convert GFF3 to GTF format in quiet mode, saving the result to a specified output file"
agat,agat_09,agat_09_09,informal,"Hey, can you help me convert GFF3 to GTF format in quiet mode?"
agat,agat_09,agat_09_10,alternative,Output GTF format in quiet mode by performing: convert GFF3
agat,agat_10,agat_10_01,original,get annotation statistics from a GFF3 file with default parameters
agat,agat_10,agat_10_02,beginner,How do I get annotation statistics from a GFF3 file with default parameters?
agat,agat_10,agat_10_03,student,I need to get annotation statistics from a GFF3 file with default parameters
agat,agat_10,agat_10_04,polite,Please get annotation statistics from a GFF3 file with default parameters
agat,agat_10,agat_10_05,sysadmin,Use agat to get annotation statistics from a GFF3 file with default parameters
agat,agat_10,agat_10_06,goal_oriented,I want to get annotation statistics from a GFF3 file with default parameters
agat,agat_10,agat_10_07,expert,get annotation statistics GFF3 file default parameters
agat,agat_10,agat_10_08,detailed,"I have data that I need to process: get annotation statistics from a GFF3 file with default parameters, saving the result to a specified output file"
agat,agat_10,agat_10_09,informal,"Hey, can you help me get annotation statistics from a GFF3 file with default parameters?"
agat,agat_10,agat_10_10,alternative,"With default parameters, get annotation statistics from a GFF3 file"
angsd,angsd_01,angsd_01_01,original,compute genotype likelihoods and allele frequencies for a set of BAMs
angsd,angsd_01,angsd_01_02,beginner,How do I compute genotype likelihoods and allele frequencies for a set of BAMs?
angsd,angsd_01,angsd_01_03,student,I need to compute genotype likelihoods and allele frequencies for a set of BAMs
angsd,angsd_01,angsd_01_04,polite,Please compute genotype likelihoods and allele frequencies for a set of BAMs
angsd,angsd_01,angsd_01_05,sysadmin,Use angsd to compute genotype likelihoods and allele frequencies for a set of BAMs
angsd,angsd_01,angsd_01_06,goal_oriented,I want to compute genotype likelihoods and allele frequencies for a set of BAMs
angsd,angsd_01,angsd_01_07,expert,compute genotype likelihoods allele frequencies set of BAMs
angsd,angsd_01,angsd_01_08,detailed,I have data that I need to process: compute genotype likelihoods and allele frequencies for a set of BAMs
angsd,angsd_01,angsd_01_09,informal,"Hey, can you help me compute genotype likelihoods and allele frequencies for a set of BAMs?"
angsd,angsd_01,angsd_01_10,alternative,Allele frequencies for a set of BAMs after compute genotype likelihoods
angsd,angsd_02,angsd_02_01,original,compute per-site allele frequency spectrum for a single population
angsd,angsd_02,angsd_02_02,beginner,How do I compute per-site allele frequency spectrum for a single population?
angsd,angsd_02,angsd_02_03,student,I need to compute per-site allele frequency spectrum for a single population
angsd,angsd_02,angsd_02_04,polite,Please compute per-site allele frequency spectrum for a single population
angsd,angsd_02,angsd_02_05,sysadmin,Use angsd to compute per-site allele frequency spectrum for a single population
angsd,angsd_02,angsd_02_06,goal_oriented,I want to compute per-site allele frequency spectrum for a single population
angsd,angsd_02,angsd_02_07,expert,compute per-site allele frequency spectrum single population
angsd,angsd_02,angsd_02_08,detailed,I have data that I need to process: compute per-site allele frequency spectrum for a single population
angsd,angsd_02,angsd_02_09,informal,"Hey, can you help me compute per-site allele frequency spectrum for a single population?"
angsd,angsd_02,angsd_02_10,alternative,Perform: compute per-site allele frequency spectrum for a single population
angsd,angsd_03,angsd_03_01,original,estimate 1D site frequency spectrum from doSaf output
angsd,angsd_03,angsd_03_02,beginner,How do I estimate 1D site frequency spectrum from doSaf output?
angsd,angsd_03,angsd_03_03,student,I need to estimate 1D site frequency spectrum from doSaf output
angsd,angsd_03,angsd_03_04,polite,Please estimate 1D site frequency spectrum from doSaf output
angsd,angsd_03,angsd_03_05,sysadmin,Use angsd to estimate 1D site frequency spectrum from doSaf output
angsd,angsd_03,angsd_03_06,goal_oriented,I want to estimate 1D site frequency spectrum from doSaf output
angsd,angsd_03,angsd_03_07,expert,estimate 1D site frequency spectrum doSaf output
angsd,angsd_03,angsd_03_08,detailed,I have data that I need to process: estimate 1D site frequency spectrum from doSaf output
angsd,angsd_03,angsd_03_09,informal,"Hey, can you help me estimate 1D site frequency spectrum from doSaf output?"
angsd,angsd_03,angsd_03_10,alternative,Perform: estimate 1D site frequency spectrum from doSaf output
angsd,angsd_04,angsd_04_01,original,estimate Watterson's theta and Tajima's D in sliding windows
angsd,angsd_04,angsd_04_02,beginner,How do I estimate Watterson's theta and Tajima's D in sliding windows?
angsd,angsd_04,angsd_04_03,student,I need to estimate Watterson's theta and Tajima's D in sliding windows
angsd,angsd_04,angsd_04_04,polite,Please estimate Watterson's theta and Tajima's D in sliding windows
angsd,angsd_04,angsd_04_05,sysadmin,Use angsd to estimate Watterson's theta and Tajima's D in sliding windows
angsd,angsd_04,angsd_04_06,goal_oriented,I want to estimate Watterson's theta and Tajima's D in sliding windows
angsd,angsd_04,angsd_04_07,expert,estimate Watterson's theta Tajima's D sliding windows
angsd,angsd_04,angsd_04_08,detailed,I have data that I need to process: estimate Watterson's theta and Tajima's D in sliding windows
angsd,angsd_04,angsd_04_09,informal,"Hey, can you help me estimate Watterson's theta and Tajima's D in sliding windows?"
angsd,angsd_04,angsd_04_10,alternative,Tajima's D in sliding windows after estimate Watterson's theta
angsd,angsd_05,angsd_05_01,original,compute Fst between two populations using 2D SFS
angsd,angsd_05,angsd_05_02,beginner,How do I compute Fst between two populations using 2D SFS?
angsd,angsd_05,angsd_05_03,student,I need to compute Fst between two populations using 2D SFS
angsd,angsd_05,angsd_05_04,polite,Please compute Fst between two populations using 2D SFS
angsd,angsd_05,angsd_05_05,sysadmin,Use angsd to compute Fst between two populations using 2D SFS
angsd,angsd_05,angsd_05_06,goal_oriented,I want to compute Fst between two populations using 2D SFS
angsd,angsd_05,angsd_05_07,expert,compute Fst between two populations 2D SFS
angsd,angsd_05,angsd_05_08,detailed,I have data that I need to process: compute Fst between two populations using 2D SFS
angsd,angsd_05,angsd_05_09,informal,"Hey, can you help me compute Fst between two populations using 2D SFS?"
angsd,angsd_05,angsd_05_10,alternative,Perform: compute Fst between two populations using 2D SFS
angsd,angsd_06,angsd_06_01,original,call SNPs and compute principal component analysis input
angsd,angsd_06,angsd_06_02,beginner,How do I call SNPs and compute principal component analysis input?
angsd,angsd_06,angsd_06_03,student,I need to call SNPs and compute principal component analysis input
angsd,angsd_06,angsd_06_04,polite,Please call SNPs and compute principal component analysis input
angsd,angsd_06,angsd_06_05,sysadmin,Use angsd to call SNPs and compute principal component analysis input
angsd,angsd_06,angsd_06_06,goal_oriented,I want to call SNPs and compute principal component analysis input
angsd,angsd_06,angsd_06_07,expert,call SNPs compute principal component analysis input
angsd,angsd_06,angsd_06_08,detailed,I have data that I need to process: call SNPs and compute principal component analysis input
angsd,angsd_06,angsd_06_09,informal,"Hey, can you help me call SNPs and compute principal component analysis input?"
angsd,angsd_06,angsd_06_10,alternative,Compute principal component analysis input after call SNPs
angsd,angsd_07,angsd_07_01,original,compute genotype likelihoods and allele frequencies for a set of BAMs using multiple threads
angsd,angsd_07,angsd_07_02,beginner,How do I compute genotype likelihoods and allele frequencies for a set of BAMs using multiple threads?
angsd,angsd_07,angsd_07_03,student,I need to compute genotype likelihoods and allele frequencies for a set of BAMs using multiple threads
angsd,angsd_07,angsd_07_04,polite,Please compute genotype likelihoods and allele frequencies for a set of BAMs using multiple threads
angsd,angsd_07,angsd_07_05,sysadmin,Use angsd to compute genotype likelihoods and allele frequencies for a set of BAMs using multiple threads
angsd,angsd_07,angsd_07_06,goal_oriented,I want to compute genotype likelihoods and allele frequencies for a set of BAMs using multiple threads
angsd,angsd_07,angsd_07_07,expert,compute genotype likelihoods allele frequencies set of BAMs multiple threads
angsd,angsd_07,angsd_07_08,detailed,"I have data that I need to process: compute genotype likelihoods and allele frequencies for a set of BAMs using multiple threads, utilizing multiple CPU threads for speed"
angsd,angsd_07,angsd_07_09,informal,"Hey, can you help me compute genotype likelihoods and allele frequencies for a set of BAMs using multiple threads?"
angsd,angsd_07,angsd_07_10,alternative,Allele frequencies for a set of BAMs using multiple threads after compute genotype likelihoods
angsd,angsd_08,angsd_08_01,original,compute per-site allele frequency spectrum for a single population and write output to a file
angsd,angsd_08,angsd_08_02,beginner,How do I compute per-site allele frequency spectrum for a single population and write output to a file?
angsd,angsd_08,angsd_08_03,student,I need to compute per-site allele frequency spectrum for a single population and write output to a file
angsd,angsd_08,angsd_08_04,polite,Please compute per-site allele frequency spectrum for a single population and write output to a file
angsd,angsd_08,angsd_08_05,sysadmin,Use angsd to compute per-site allele frequency spectrum for a single population and write output to a file
angsd,angsd_08,angsd_08_06,goal_oriented,I want to compute per-site allele frequency spectrum for a single population and write output to a file
angsd,angsd_08,angsd_08_07,expert,compute per-site allele frequency spectrum single population write output file
angsd,angsd_08,angsd_08_08,detailed,"I have data that I need to process: compute per-site allele frequency spectrum for a single population and write output to a file, saving the result to a specified output file"
angsd,angsd_08,angsd_08_09,informal,"Hey, can you help me compute per-site allele frequency spectrum for a single population and write output to a file?"
angsd,angsd_08,angsd_08_10,alternative,Write output to a file after compute per-site allele frequency spectrum for a single population
angsd,angsd_09,angsd_09_01,original,estimate 1D site frequency spectrum from doSaf output
angsd,angsd_09,angsd_09_02,beginner,How do I estimate 1D site frequency spectrum from doSaf output?
angsd,angsd_09,angsd_09_03,student,I need to estimate 1D site frequency spectrum from doSaf output
angsd,angsd_09,angsd_09_04,polite,Please estimate 1D site frequency spectrum from doSaf output
angsd,angsd_09,angsd_09_05,sysadmin,Use angsd to estimate 1D site frequency spectrum from doSaf output
angsd,angsd_09,angsd_09_06,goal_oriented,I want to estimate 1D site frequency spectrum from doSaf output
angsd,angsd_09,angsd_09_07,expert,estimate 1D site frequency spectrum doSaf output
angsd,angsd_09,angsd_09_08,detailed,I have data that I need to process: estimate 1D site frequency spectrum from doSaf output
angsd,angsd_09,angsd_09_09,informal,"Hey, can you help me estimate 1D site frequency spectrum from doSaf output?"
angsd,angsd_09,angsd_09_10,alternative,Perform: estimate 1D site frequency spectrum from doSaf output
angsd,angsd_10,angsd_10_01,original,estimate Watterson's theta and Tajima's D in sliding windows with default parameters
angsd,angsd_10,angsd_10_02,beginner,How do I estimate Watterson's theta and Tajima's D in sliding windows with default parameters?
angsd,angsd_10,angsd_10_03,student,I need to estimate Watterson's theta and Tajima's D in sliding windows with default parameters
angsd,angsd_10,angsd_10_04,polite,Please estimate Watterson's theta and Tajima's D in sliding windows with default parameters
angsd,angsd_10,angsd_10_05,sysadmin,Use angsd to estimate Watterson's theta and Tajima's D in sliding windows with default parameters
angsd,angsd_10,angsd_10_06,goal_oriented,I want to estimate Watterson's theta and Tajima's D in sliding windows with default parameters
angsd,angsd_10,angsd_10_07,expert,estimate Watterson's theta Tajima's D sliding windows default parameters
angsd,angsd_10,angsd_10_08,detailed,I have data that I need to process: estimate Watterson's theta and Tajima's D in sliding windows with default parameters
angsd,angsd_10,angsd_10_09,informal,"Hey, can you help me estimate Watterson's theta and Tajima's D in sliding windows with default parameters?"
angsd,angsd_10,angsd_10_10,alternative,Tajima's D in sliding windows with default parameters after estimate Watterson's theta
arriba,arriba_01,arriba_01_01,original,run STAR with chimeric output for Arriba fusion detection
arriba,arriba_01,arriba_01_02,beginner,How do I run STAR with chimeric output for Arriba fusion detection?
arriba,arriba_01,arriba_01_03,student,I need to run STAR with chimeric output for Arriba fusion detection
arriba,arriba_01,arriba_01_04,polite,Please run STAR with chimeric output for Arriba fusion detection
arriba,arriba_01,arriba_01_05,sysadmin,Use arriba to run STAR with chimeric output for Arriba fusion detection
arriba,arriba_01,arriba_01_06,goal_oriented,I want to run STAR with chimeric output for Arriba fusion detection
arriba,arriba_01,arriba_01_07,expert,run STAR chimeric output Arriba fusion detection
arriba,arriba_01,arriba_01_08,detailed,I have data that I need to process: run STAR with chimeric output for Arriba fusion detection
arriba,arriba_01,arriba_01_09,informal,"Hey, can you help me run STAR with chimeric output for Arriba fusion detection?"
arriba,arriba_01,arriba_01_10,alternative,"With chimeric output for Arriba fusion detection, run STAR"
arriba,arriba_02,arriba_02_01,original,detect gene fusions with Arriba
arriba,arriba_02,arriba_02_02,beginner,How do I detect gene fusions with Arriba?
arriba,arriba_02,arriba_02_03,student,I need to detect gene fusions with Arriba
arriba,arriba_02,arriba_02_04,polite,Please detect gene fusions with Arriba
arriba,arriba_02,arriba_02_05,sysadmin,Use arriba to detect gene fusions with Arriba
arriba,arriba_02,arriba_02_06,goal_oriented,I want to detect gene fusions with Arriba
arriba,arriba_02,arriba_02_07,expert,detect gene fusions Arriba
arriba,arriba_02,arriba_02_08,detailed,"I have data that I need to process: detect gene fusions with Arriba, saving the result to a specified output file"
arriba,arriba_02,arriba_02_09,informal,"Hey, can you help me detect gene fusions with Arriba?"
arriba,arriba_02,arriba_02_10,alternative,"With Arriba, detect gene fusions"
arriba,arriba_03,arriba_03_01,original,visualize detected fusions with Arriba draw_fusions
arriba,arriba_03,arriba_03_02,beginner,How do I visualize detected fusions with Arriba draw_fusions?
arriba,arriba_03,arriba_03_03,student,I need to visualize detected fusions with Arriba draw_fusions
arriba,arriba_03,arriba_03_04,polite,Please visualize detected fusions with Arriba draw_fusions
arriba,arriba_03,arriba_03_05,sysadmin,Use arriba to visualize detected fusions with Arriba draw_fusions
arriba,arriba_03,arriba_03_06,goal_oriented,I want to visualize detected fusions with Arriba draw_fusions
arriba,arriba_03,arriba_03_07,expert,visualize detected fusions Arriba draw_fusions
arriba,arriba_03,arriba_03_08,detailed,"I have data that I need to process: visualize detected fusions with Arriba draw_fusions, saving the result to a specified output file"
arriba,arriba_03,arriba_03_09,informal,"Hey, can you help me visualize detected fusions with Arriba draw_fusions?"
arriba,arriba_03,arriba_03_10,alternative,"With Arriba draw_fusions, visualize detected fusions"
arriba,arriba_04,arriba_04_01,original,run STAR with chimeric output for Arriba fusion detection in quiet mode
arriba,arriba_04,arriba_04_02,beginner,How do I run STAR with chimeric output for Arriba fusion detection in quiet mode?
arriba,arriba_04,arriba_04_03,student,I need to run STAR with chimeric output for Arriba fusion detection in quiet mode
arriba,arriba_04,arriba_04_04,polite,Please run STAR with chimeric output for Arriba fusion detection in quiet mode
arriba,arriba_04,arriba_04_05,sysadmin,Use arriba to run STAR with chimeric output for Arriba fusion detection in quiet mode
arriba,arriba_04,arriba_04_06,goal_oriented,I want to run STAR with chimeric output for Arriba fusion detection in quiet mode
arriba,arriba_04,arriba_04_07,expert,run STAR chimeric output Arriba fusion detection quiet mode
arriba,arriba_04,arriba_04_08,detailed,I have data that I need to process: run STAR with chimeric output for Arriba fusion detection in quiet mode
arriba,arriba_04,arriba_04_09,informal,"Hey, can you help me run STAR with chimeric output for Arriba fusion detection in quiet mode?"
arriba,arriba_04,arriba_04_10,alternative,"With chimeric output for Arriba fusion detection in quiet mode, run STAR"
arriba,arriba_05,arriba_05_01,original,detect gene fusions with Arriba with default parameters
arriba,arriba_05,arriba_05_02,beginner,How do I detect gene fusions with Arriba with default parameters?
arriba,arriba_05,arriba_05_03,student,I need to detect gene fusions with Arriba with default parameters
arriba,arriba_05,arriba_05_04,polite,Please detect gene fusions with Arriba with default parameters
arriba,arriba_05,arriba_05_05,sysadmin,Use arriba to detect gene fusions with Arriba with default parameters
arriba,arriba_05,arriba_05_06,goal_oriented,I want to detect gene fusions with Arriba with default parameters
arriba,arriba_05,arriba_05_07,expert,detect gene fusions Arriba default parameters
arriba,arriba_05,arriba_05_08,detailed,"I have data that I need to process: detect gene fusions with Arriba with default parameters, saving the result to a specified output file"
arriba,arriba_05,arriba_05_09,informal,"Hey, can you help me detect gene fusions with Arriba with default parameters?"
arriba,arriba_05,arriba_05_10,alternative,"With Arriba with default parameters, detect gene fusions"
arriba,arriba_06,arriba_06_01,original,visualize detected fusions with Arriba draw_fusions with verbose output
arriba,arriba_06,arriba_06_02,beginner,How do I visualize detected fusions with Arriba draw_fusions with verbose output?
arriba,arriba_06,arriba_06_03,student,I need to visualize detected fusions with Arriba draw_fusions with verbose output
arriba,arriba_06,arriba_06_04,polite,Please visualize detected fusions with Arriba draw_fusions with verbose output
arriba,arriba_06,arriba_06_05,sysadmin,Use arriba to visualize detected fusions with Arriba draw_fusions with verbose output
arriba,arriba_06,arriba_06_06,goal_oriented,I want to visualize detected fusions with Arriba draw_fusions with verbose output
arriba,arriba_06,arriba_06_07,expert,visualize detected fusions Arriba draw_fusions verbose output
arriba,arriba_06,arriba_06_08,detailed,"I have data that I need to process: visualize detected fusions with Arriba draw_fusions with verbose output, saving the result to a specified output file"
arriba,arriba_06,arriba_06_09,informal,"Hey, can you help me visualize detected fusions with Arriba draw_fusions with verbose output?"
arriba,arriba_06,arriba_06_10,alternative,"With Arriba draw_fusions with verbose output, visualize detected fusions"
arriba,arriba_07,arriba_07_01,original,run STAR with chimeric output for Arriba fusion detection using multiple threads
arriba,arriba_07,arriba_07_02,beginner,How do I run STAR with chimeric output for Arriba fusion detection using multiple threads?
arriba,arriba_07,arriba_07_03,student,I need to run STAR with chimeric output for Arriba fusion detection using multiple threads
arriba,arriba_07,arriba_07_04,polite,Please run STAR with chimeric output for Arriba fusion detection using multiple threads
arriba,arriba_07,arriba_07_05,sysadmin,Use arriba to run STAR with chimeric output for Arriba fusion detection using multiple threads
arriba,arriba_07,arriba_07_06,goal_oriented,I want to run STAR with chimeric output for Arriba fusion detection using multiple threads
arriba,arriba_07,arriba_07_07,expert,run STAR chimeric output Arriba fusion detection multiple threads
arriba,arriba_07,arriba_07_08,detailed,"I have data that I need to process: run STAR with chimeric output for Arriba fusion detection using multiple threads, utilizing multiple CPU threads for speed"
arriba,arriba_07,arriba_07_09,informal,"Hey, can you help me run STAR with chimeric output for Arriba fusion detection using multiple threads?"
arriba,arriba_07,arriba_07_10,alternative,"With chimeric output for Arriba fusion detection using multiple threads, run STAR"
arriba,arriba_08,arriba_08_01,original,detect gene fusions with Arriba and write output to a file
arriba,arriba_08,arriba_08_02,beginner,How do I detect gene fusions with Arriba and write output to a file?
arriba,arriba_08,arriba_08_03,student,I need to detect gene fusions with Arriba and write output to a file
arriba,arriba_08,arriba_08_04,polite,Please detect gene fusions with Arriba and write output to a file
arriba,arriba_08,arriba_08_05,sysadmin,Use arriba to detect gene fusions with Arriba and write output to a file
arriba,arriba_08,arriba_08_06,goal_oriented,I want to detect gene fusions with Arriba and write output to a file
arriba,arriba_08,arriba_08_07,expert,detect gene fusions Arriba write output file
arriba,arriba_08,arriba_08_08,detailed,"I have data that I need to process: detect gene fusions with Arriba and write output to a file, saving the result to a specified output file"
arriba,arriba_08,arriba_08_09,informal,"Hey, can you help me detect gene fusions with Arriba and write output to a file?"
arriba,arriba_08,arriba_08_10,alternative,Write output to a file after detect gene fusions with Arriba
arriba,arriba_09,arriba_09_01,original,visualize detected fusions with Arriba draw_fusions in quiet mode
arriba,arriba_09,arriba_09_02,beginner,How do I visualize detected fusions with Arriba draw_fusions in quiet mode?
arriba,arriba_09,arriba_09_03,student,I need to visualize detected fusions with Arriba draw_fusions in quiet mode
arriba,arriba_09,arriba_09_04,polite,Please visualize detected fusions with Arriba draw_fusions in quiet mode
arriba,arriba_09,arriba_09_05,sysadmin,Use arriba to visualize detected fusions with Arriba draw_fusions in quiet mode
arriba,arriba_09,arriba_09_06,goal_oriented,I want to visualize detected fusions with Arriba draw_fusions in quiet mode
arriba,arriba_09,arriba_09_07,expert,visualize detected fusions Arriba draw_fusions quiet mode
arriba,arriba_09,arriba_09_08,detailed,"I have data that I need to process: visualize detected fusions with Arriba draw_fusions in quiet mode, saving the result to a specified output file"
arriba,arriba_09,arriba_09_09,informal,"Hey, can you help me visualize detected fusions with Arriba draw_fusions in quiet mode?"
arriba,arriba_09,arriba_09_10,alternative,"With Arriba draw_fusions in quiet mode, visualize detected fusions"
arriba,arriba_10,arriba_10_01,original,run STAR with chimeric output for Arriba fusion detection with default parameters
arriba,arriba_10,arriba_10_02,beginner,How do I run STAR with chimeric output for Arriba fusion detection with default parameters?
arriba,arriba_10,arriba_10_03,student,I need to run STAR with chimeric output for Arriba fusion detection with default parameters
arriba,arriba_10,arriba_10_04,polite,Please run STAR with chimeric output for Arriba fusion detection with default parameters
arriba,arriba_10,arriba_10_05,sysadmin,Use arriba to run STAR with chimeric output for Arriba fusion detection with default parameters
arriba,arriba_10,arriba_10_06,goal_oriented,I want to run STAR with chimeric output for Arriba fusion detection with default parameters
arriba,arriba_10,arriba_10_07,expert,run STAR chimeric output Arriba fusion detection default parameters
arriba,arriba_10,arriba_10_08,detailed,I have data that I need to process: run STAR with chimeric output for Arriba fusion detection with default parameters
arriba,arriba_10,arriba_10_09,informal,"Hey, can you help me run STAR with chimeric output for Arriba fusion detection with default parameters?"
arriba,arriba_10,arriba_10_10,alternative,"With chimeric output for Arriba fusion detection with default parameters, run STAR"
augustus,augustus_01,augustus_01_01,original,predict genes in a eukaryotic genome using human parameters
augustus,augustus_01,augustus_01_02,beginner,How do I predict genes in a eukaryotic genome using human parameters?
augustus,augustus_01,augustus_01_03,student,I need to predict genes in a eukaryotic genome using human parameters
augustus,augustus_01,augustus_01_04,polite,Please predict genes in a eukaryotic genome using human parameters
augustus,augustus_01,augustus_01_05,sysadmin,Use augustus to predict genes in a eukaryotic genome using human parameters
augustus,augustus_01,augustus_01_06,goal_oriented,I want to predict genes in a eukaryotic genome using human parameters
augustus,augustus_01,augustus_01_07,expert,predict genes eukaryotic genome human parameters
augustus,augustus_01,augustus_01_08,detailed,I have data that I need to process: predict genes in a eukaryotic genome using human parameters
augustus,augustus_01,augustus_01_09,informal,"Hey, can you help me predict genes in a eukaryotic genome using human parameters?"
augustus,augustus_01,augustus_01_10,alternative,Perform: predict genes in a eukaryotic genome using human parameters
augustus,augustus_02,augustus_02_01,original,predict genes with RNA-seq hints for improved accuracy
augustus,augustus_02,augustus_02_02,beginner,How do I predict genes with RNA-seq hints for improved accuracy?
augustus,augustus_02,augustus_02_03,student,I need to predict genes with RNA-seq hints for improved accuracy
augustus,augustus_02,augustus_02_04,polite,Please predict genes with RNA-seq hints for improved accuracy
augustus,augustus_02,augustus_02_05,sysadmin,Use augustus to predict genes with RNA-seq hints for improved accuracy
augustus,augustus_02,augustus_02_06,goal_oriented,I want to predict genes with RNA-seq hints for improved accuracy
augustus,augustus_02,augustus_02_07,expert,predict genes RNA-seq hints improved accuracy
augustus,augustus_02,augustus_02_08,detailed,I have data that I need to process: predict genes with RNA-seq hints for improved accuracy
augustus,augustus_02,augustus_02_09,informal,"Hey, can you help me predict genes with RNA-seq hints for improved accuracy?"
augustus,augustus_02,augustus_02_10,alternative,"With RNA-seq hints for improved accuracy, predict genes"
augustus,augustus_03,augustus_03_01,original,predict genes and output protein sequences
augustus,augustus_03,augustus_03_02,beginner,How do I predict genes and output protein sequences?
augustus,augustus_03,augustus_03_03,student,I need to predict genes and output protein sequences
augustus,augustus_03,augustus_03_04,polite,Please predict genes and output protein sequences
augustus,augustus_03,augustus_03_05,sysadmin,Use augustus to predict genes and output protein sequences
augustus,augustus_03,augustus_03_06,goal_oriented,I want to predict genes and output protein sequences
augustus,augustus_03,augustus_03_07,expert,predict genes output protein sequences
augustus,augustus_03,augustus_03_08,detailed,I have data that I need to process: predict genes and output protein sequences
augustus,augustus_03,augustus_03_09,informal,"Hey, can you help me predict genes and output protein sequences?"
augustus,augustus_03,augustus_03_10,alternative,Output protein sequences after predict genes
augustus,augustus_04,augustus_04_01,original,run Augustus on a repeat-masked genome
augustus,augustus_04,augustus_04_02,beginner,How do I run Augustus on a repeat-masked genome?
augustus,augustus_04,augustus_04_03,student,I need to run Augustus on a repeat-masked genome
augustus,augustus_04,augustus_04_04,polite,Please run Augustus on a repeat-masked genome
augustus,augustus_04,augustus_04_05,sysadmin,Use augustus to run Augustus on a repeat-masked genome
augustus,augustus_04,augustus_04_06,goal_oriented,I want to run Augustus on a repeat-masked genome
augustus,augustus_04,augustus_04_07,expert,run Augustus on repeat-masked genome
augustus,augustus_04,augustus_04_08,detailed,I have data that I need to process: run Augustus on a repeat-masked genome
augustus,augustus_04,augustus_04_09,informal,"Hey, can you help me run Augustus on a repeat-masked genome?"
augustus,augustus_04,augustus_04_10,alternative,Perform: run Augustus on a repeat-masked genome
augustus,augustus_05,augustus_05_01,original,predict genes in a eukaryotic genome using human parameters with default parameters
augustus,augustus_05,augustus_05_02,beginner,How do I predict genes in a eukaryotic genome using human parameters with default parameters?
augustus,augustus_05,augustus_05_03,student,I need to predict genes in a eukaryotic genome using human parameters with default parameters
augustus,augustus_05,augustus_05_04,polite,Please predict genes in a eukaryotic genome using human parameters with default parameters
augustus,augustus_05,augustus_05_05,sysadmin,Use augustus to predict genes in a eukaryotic genome using human parameters with default parameters
augustus,augustus_05,augustus_05_06,goal_oriented,I want to predict genes in a eukaryotic genome using human parameters with default parameters
augustus,augustus_05,augustus_05_07,expert,predict genes eukaryotic genome human parameters default parameters
augustus,augustus_05,augustus_05_08,detailed,I have data that I need to process: predict genes in a eukaryotic genome using human parameters with default parameters
augustus,augustus_05,augustus_05_09,informal,"Hey, can you help me predict genes in a eukaryotic genome using human parameters with default parameters?"
augustus,augustus_05,augustus_05_10,alternative,"With default parameters, predict genes in a eukaryotic genome using human parameters"
augustus,augustus_06,augustus_06_01,original,predict genes with RNA-seq hints for improved accuracy
augustus,augustus_06,augustus_06_02,beginner,How do I predict genes with RNA-seq hints for improved accuracy?
augustus,augustus_06,augustus_06_03,student,I need to predict genes with RNA-seq hints for improved accuracy
augustus,augustus_06,augustus_06_04,polite,Please predict genes with RNA-seq hints for improved accuracy
augustus,augustus_06,augustus_06_05,sysadmin,Use augustus to predict genes with RNA-seq hints for improved accuracy
augustus,augustus_06,augustus_06_06,goal_oriented,I want to predict genes with RNA-seq hints for improved accuracy
augustus,augustus_06,augustus_06_07,expert,predict genes RNA-seq hints improved accuracy
augustus,augustus_06,augustus_06_08,detailed,I have data that I need to process: predict genes with RNA-seq hints for improved accuracy
augustus,augustus_06,augustus_06_09,informal,"Hey, can you help me predict genes with RNA-seq hints for improved accuracy?"
augustus,augustus_06,augustus_06_10,alternative,"With RNA-seq hints for improved accuracy, predict genes"
augustus,augustus_07,augustus_07_01,original,predict genes and output protein sequences
augustus,augustus_07,augustus_07_02,beginner,How do I predict genes and output protein sequences?
augustus,augustus_07,augustus_07_03,student,I need to predict genes and output protein sequences
augustus,augustus_07,augustus_07_04,polite,Please predict genes and output protein sequences
augustus,augustus_07,augustus_07_05,sysadmin,Use augustus to predict genes and output protein sequences
augustus,augustus_07,augustus_07_06,goal_oriented,I want to predict genes and output protein sequences
augustus,augustus_07,augustus_07_07,expert,predict genes output protein sequences
augustus,augustus_07,augustus_07_08,detailed,I have data that I need to process: predict genes and output protein sequences
augustus,augustus_07,augustus_07_09,informal,"Hey, can you help me predict genes and output protein sequences?"
augustus,augustus_07,augustus_07_10,alternative,Output protein sequences after predict genes
augustus,augustus_08,augustus_08_01,original,run Augustus on a repeat-masked genome
augustus,augustus_08,augustus_08_02,beginner,How do I run Augustus on a repeat-masked genome?
augustus,augustus_08,augustus_08_03,student,I need to run Augustus on a repeat-masked genome
augustus,augustus_08,augustus_08_04,polite,Please run Augustus on a repeat-masked genome
augustus,augustus_08,augustus_08_05,sysadmin,Use augustus to run Augustus on a repeat-masked genome
augustus,augustus_08,augustus_08_06,goal_oriented,I want to run Augustus on a repeat-masked genome
augustus,augustus_08,augustus_08_07,expert,run Augustus on repeat-masked genome
augustus,augustus_08,augustus_08_08,detailed,I have data that I need to process: run Augustus on a repeat-masked genome
augustus,augustus_08,augustus_08_09,informal,"Hey, can you help me run Augustus on a repeat-masked genome?"
augustus,augustus_08,augustus_08_10,alternative,Perform: run Augustus on a repeat-masked genome
augustus,augustus_09,augustus_09_01,original,predict genes in a eukaryotic genome using human parameters
augustus,augustus_09,augustus_09_02,beginner,How do I predict genes in a eukaryotic genome using human parameters?
augustus,augustus_09,augustus_09_03,student,I need to predict genes in a eukaryotic genome using human parameters
augustus,augustus_09,augustus_09_04,polite,Please predict genes in a eukaryotic genome using human parameters
augustus,augustus_09,augustus_09_05,sysadmin,Use augustus to predict genes in a eukaryotic genome using human parameters
augustus,augustus_09,augustus_09_06,goal_oriented,I want to predict genes in a eukaryotic genome using human parameters
augustus,augustus_09,augustus_09_07,expert,predict genes eukaryotic genome human parameters
augustus,augustus_09,augustus_09_08,detailed,I have data that I need to process: predict genes in a eukaryotic genome using human parameters
augustus,augustus_09,augustus_09_09,informal,"Hey, can you help me predict genes in a eukaryotic genome using human parameters?"
augustus,augustus_09,augustus_09_10,alternative,Perform: predict genes in a eukaryotic genome using human parameters
augustus,augustus_10,augustus_10_01,original,predict genes with RNA-seq hints for improved accuracy with default parameters
augustus,augustus_10,augustus_10_02,beginner,How do I predict genes with RNA-seq hints for improved accuracy with default parameters?
augustus,augustus_10,augustus_10_03,student,I need to predict genes with RNA-seq hints for improved accuracy with default parameters
augustus,augustus_10,augustus_10_04,polite,Please predict genes with RNA-seq hints for improved accuracy with default parameters
augustus,augustus_10,augustus_10_05,sysadmin,Use augustus to predict genes with RNA-seq hints for improved accuracy with default parameters
augustus,augustus_10,augustus_10_06,goal_oriented,I want to predict genes with RNA-seq hints for improved accuracy with default parameters
augustus,augustus_10,augustus_10_07,expert,predict genes RNA-seq hints improved accuracy default parameters
augustus,augustus_10,augustus_10_08,detailed,I have data that I need to process: predict genes with RNA-seq hints for improved accuracy with default parameters
augustus,augustus_10,augustus_10_09,informal,"Hey, can you help me predict genes with RNA-seq hints for improved accuracy with default parameters?"
augustus,augustus_10,augustus_10_10,alternative,"With RNA-seq hints for improved accuracy with default parameters, predict genes"
awk,awk_01,awk_01_01,original,print specific columns from a CSV file
awk,awk_01,awk_01_02,beginner,How do I print specific columns from a CSV file?
awk,awk_01,awk_01_03,student,I need to print specific columns from a CSV file
awk,awk_01,awk_01_04,polite,Please print specific columns from a CSV file
awk,awk_01,awk_01_05,sysadmin,Use awk to print specific columns from a CSV file
awk,awk_01,awk_01_06,goal_oriented,I want to print specific columns from a CSV file
awk,awk_01,awk_01_07,expert,print specific columns CSV file
awk,awk_01,awk_01_08,detailed,I have data that I need to process: print specific columns from a CSV file
awk,awk_01,awk_01_09,informal,"Hey, can you help me print specific columns from a CSV file?"
awk,awk_01,awk_01_10,alternative,Perform: print specific columns from a CSV file
awk,awk_02,awk_02_01,original,sum values in a column and print the total
awk,awk_02,awk_02_02,beginner,How do I sum values in a column and print the total?
awk,awk_02,awk_02_03,student,I need to sum values in a column and print the total
awk,awk_02,awk_02_04,polite,Please sum values in a column and print the total
awk,awk_02,awk_02_05,sysadmin,Use awk to sum values in a column and print the total
awk,awk_02,awk_02_06,goal_oriented,I want to sum values in a column and print the total
awk,awk_02,awk_02_07,expert,sum values column print total
awk,awk_02,awk_02_08,detailed,I have data that I need to process: sum values in a column and print the total
awk,awk_02,awk_02_09,informal,"Hey, can you help me sum values in a column and print the total?"
awk,awk_02,awk_02_10,alternative,Print the total after sum values in a column
awk,awk_03,awk_03_01,original,filter and print lines where a column exceeds a threshold
awk,awk_03,awk_03_02,beginner,How do I filter and print lines where a column exceeds a threshold?
awk,awk_03,awk_03_03,student,I need to filter and print lines where a column exceeds a threshold
awk,awk_03,awk_03_04,polite,Please filter and print lines where a column exceeds a threshold
awk,awk_03,awk_03_05,sysadmin,Use awk to filter and print lines where a column exceeds a threshold
awk,awk_03,awk_03_06,goal_oriented,I want to filter and print lines where a column exceeds a threshold
awk,awk_03,awk_03_07,expert,filter print lines where column exceeds threshold
awk,awk_03,awk_03_08,detailed,I have data that I need to process: filter and print lines where a column exceeds a threshold
awk,awk_03,awk_03_09,informal,"Hey, can you help me filter and print lines where a column exceeds a threshold?"
awk,awk_03,awk_03_10,alternative,Print lines where a column exceeds a threshold after filter
awk,awk_04,awk_04_01,original,count occurrences of each unique value in a column
awk,awk_04,awk_04_02,beginner,How do I count occurrences of each unique value in a column?
awk,awk_04,awk_04_03,student,I need to count occurrences of each unique value in a column
awk,awk_04,awk_04_04,polite,Please count occurrences of each unique value in a column
awk,awk_04,awk_04_05,sysadmin,Use awk to count occurrences of each unique value in a column
awk,awk_04,awk_04_06,goal_oriented,I want to count occurrences of each unique value in a column
awk,awk_04,awk_04_07,expert,count occurrences of each unique value column
awk,awk_04,awk_04_08,detailed,I have data that I need to process: count occurrences of each unique value in a column
awk,awk_04,awk_04_09,informal,"Hey, can you help me count occurrences of each unique value in a column?"
awk,awk_04,awk_04_10,alternative,Perform: count occurrences of each unique value in a column
awk,awk_05,awk_05_01,original,print lines between two patterns (inclusive)
awk,awk_05,awk_05_02,beginner,How do I print lines between two patterns (inclusive)?
awk,awk_05,awk_05_03,student,I need to print lines between two patterns (inclusive)
awk,awk_05,awk_05_04,polite,Please print lines between two patterns (inclusive)
awk,awk_05,awk_05_05,sysadmin,Use awk to print lines between two patterns (inclusive)
awk,awk_05,awk_05_06,goal_oriented,I want to print lines between two patterns (inclusive)
awk,awk_05,awk_05_07,expert,print lines between two patterns (inclusive)
awk,awk_05,awk_05_08,detailed,I have data that I need to process: print lines between two patterns (inclusive)
awk,awk_05,awk_05_09,informal,"Hey, can you help me print lines between two patterns (inclusive)?"
awk,awk_05,awk_05_10,alternative,Perform: print lines between two patterns (inclusive)
awk,awk_06,awk_06_01,original,remove duplicate consecutive lines
awk,awk_06,awk_06_02,beginner,How do I remove duplicate consecutive lines?
awk,awk_06,awk_06_03,student,I need to remove duplicate consecutive lines
awk,awk_06,awk_06_04,polite,Please remove duplicate consecutive lines
awk,awk_06,awk_06_05,sysadmin,Use awk to remove duplicate consecutive lines
awk,awk_06,awk_06_06,goal_oriented,I want to remove duplicate consecutive lines
awk,awk_06,awk_06_07,expert,remove duplicate consecutive lines
awk,awk_06,awk_06_08,detailed,I have data that I need to process: remove duplicate consecutive lines
awk,awk_06,awk_06_09,informal,"Hey, can you help me remove duplicate consecutive lines?"
awk,awk_06,awk_06_10,alternative,Perform: remove duplicate consecutive lines
awk,awk_07,awk_07_01,original,add line numbers to output
awk,awk_07,awk_07_02,beginner,How do I add line numbers to output?
awk,awk_07,awk_07_03,student,I need to add line numbers to output
awk,awk_07,awk_07_04,polite,Please add line numbers to output
awk,awk_07,awk_07_05,sysadmin,Use awk to add line numbers to output
awk,awk_07,awk_07_06,goal_oriented,I want to add line numbers to output
awk,awk_07,awk_07_07,expert,add line numbers output
awk,awk_07,awk_07_08,detailed,I have data that I need to process: add line numbers to output
awk,awk_07,awk_07_09,informal,"Hey, can you help me add line numbers to output?"
awk,awk_07,awk_07_10,alternative,Output output by performing: add line numbers
awk,awk_08,awk_08_01,original,convert tab-separated to comma-separated
awk,awk_08,awk_08_02,beginner,How do I convert tab-separated to comma-separated?
awk,awk_08,awk_08_03,student,I need to convert tab-separated to comma-separated
awk,awk_08,awk_08_04,polite,Please convert tab-separated to comma-separated
awk,awk_08,awk_08_05,sysadmin,Use awk to convert tab-separated to comma-separated
awk,awk_08,awk_08_06,goal_oriented,I want to convert tab-separated to comma-separated
awk,awk_08,awk_08_07,expert,convert tab-separated comma-separated
awk,awk_08,awk_08_08,detailed,I have data that I need to process: convert tab-separated to comma-separated
awk,awk_08,awk_08_09,informal,"Hey, can you help me convert tab-separated to comma-separated?"
awk,awk_08,awk_08_10,alternative,Output comma-separated by performing: convert tab-separated
awk,awk_09,awk_09_01,original,calculate average of a column
awk,awk_09,awk_09_02,beginner,How do I calculate average of a column?
awk,awk_09,awk_09_03,student,I need to calculate average of a column
awk,awk_09,awk_09_04,polite,Please calculate average of a column
awk,awk_09,awk_09_05,sysadmin,Use awk to calculate average of a column
awk,awk_09,awk_09_06,goal_oriented,I want to calculate average of a column
awk,awk_09,awk_09_07,expert,calculate average of column
awk,awk_09,awk_09_08,detailed,I have data that I need to process: calculate average of a column
awk,awk_09,awk_09_09,informal,"Hey, can you help me calculate average of a column?"
awk,awk_09,awk_09_10,alternative,Perform: calculate average of a column
awk,awk_10,awk_10_01,original,print the last field of each line regardless of column count
awk,awk_10,awk_10_02,beginner,How do I print the last field of each line regardless of column count?
awk,awk_10,awk_10_03,student,I need to print the last field of each line regardless of column count
awk,awk_10,awk_10_04,polite,Please print the last field of each line regardless of column count
awk,awk_10,awk_10_05,sysadmin,Use awk to print the last field of each line regardless of column count
awk,awk_10,awk_10_06,goal_oriented,I want to print the last field of each line regardless of column count
awk,awk_10,awk_10_07,expert,print last field of each line regardless of column count
awk,awk_10,awk_10_08,detailed,I have data that I need to process: print the last field of each line regardless of column count
awk,awk_10,awk_10_09,informal,"Hey, can you help me print the last field of each line regardless of column count?"
awk,awk_10,awk_10_10,alternative,Perform: print the last field of each line regardless of column count
bakta,bakta_01,bakta_01_01,original,annotate a bacterial genome with Bakta
bakta,bakta_01,bakta_01_02,beginner,How do I annotate a bacterial genome with Bakta?
bakta,bakta_01,bakta_01_03,student,I need to annotate a bacterial genome with Bakta
bakta,bakta_01,bakta_01_04,polite,Please annotate a bacterial genome with Bakta
bakta,bakta_01,bakta_01_05,sysadmin,Use bakta to annotate a bacterial genome with Bakta
bakta,bakta_01,bakta_01_06,goal_oriented,I want to annotate a bacterial genome with Bakta
bakta,bakta_01,bakta_01_07,expert,annotate bacterial genome Bakta
bakta,bakta_01,bakta_01_08,detailed,"I have data that I need to process: annotate a bacterial genome with Bakta, utilizing multiple CPU threads for speed, saving the result to a specified output file"
bakta,bakta_01,bakta_01_09,informal,"Hey, can you help me annotate a bacterial genome with Bakta?"
bakta,bakta_01,bakta_01_10,alternative,"With Bakta, annotate a bacterial genome"
bakta,bakta_02,bakta_02_01,original,annotate genome for NCBI submission
bakta,bakta_02,bakta_02_02,beginner,How do I annotate genome for NCBI submission?
bakta,bakta_02,bakta_02_03,student,I need to annotate genome for NCBI submission
bakta,bakta_02,bakta_02_04,polite,Please annotate genome for NCBI submission
bakta,bakta_02,bakta_02_05,sysadmin,Use bakta to annotate genome for NCBI submission
bakta,bakta_02,bakta_02_06,goal_oriented,I want to annotate genome for NCBI submission
bakta,bakta_02,bakta_02_07,expert,annotate genome NCBI submission
bakta,bakta_02,bakta_02_08,detailed,"I have data that I need to process: annotate genome for NCBI submission, utilizing multiple CPU threads for speed, saving the result to a specified output file"
bakta,bakta_02,bakta_02_09,informal,"Hey, can you help me annotate genome for NCBI submission?"
bakta,bakta_02,bakta_02_10,alternative,Perform: annotate genome for NCBI submission
bakta,bakta_03,bakta_03_01,original,annotate plasmid sequence
bakta,bakta_03,bakta_03_02,beginner,How do I annotate plasmid sequence?
bakta,bakta_03,bakta_03_03,student,I need to annotate plasmid sequence
bakta,bakta_03,bakta_03_04,polite,Please annotate plasmid sequence
bakta,bakta_03,bakta_03_05,sysadmin,Use bakta to annotate plasmid sequence
bakta,bakta_03,bakta_03_06,goal_oriented,I want to annotate plasmid sequence
bakta,bakta_03,bakta_03_07,expert,annotate plasmid sequence
bakta,bakta_03,bakta_03_08,detailed,"I have data that I need to process: annotate plasmid sequence, utilizing multiple CPU threads for speed, saving the result to a specified output file"
bakta,bakta_03,bakta_03_09,informal,"Hey, can you help me annotate plasmid sequence?"
bakta,bakta_03,bakta_03_10,alternative,Perform: annotate plasmid sequence
bakta,bakta_04,bakta_04_01,original,annotate a bacterial genome with Bakta in quiet mode
bakta,bakta_04,bakta_04_02,beginner,How do I annotate a bacterial genome with Bakta in quiet mode?
bakta,bakta_04,bakta_04_03,student,I need to annotate a bacterial genome with Bakta in quiet mode
bakta,bakta_04,bakta_04_04,polite,Please annotate a bacterial genome with Bakta in quiet mode
bakta,bakta_04,bakta_04_05,sysadmin,Use bakta to annotate a bacterial genome with Bakta in quiet mode
bakta,bakta_04,bakta_04_06,goal_oriented,I want to annotate a bacterial genome with Bakta in quiet mode
bakta,bakta_04,bakta_04_07,expert,annotate bacterial genome Bakta quiet mode
bakta,bakta_04,bakta_04_08,detailed,"I have data that I need to process: annotate a bacterial genome with Bakta in quiet mode, utilizing multiple CPU threads for speed, saving the result to a specified output file"
bakta,bakta_04,bakta_04_09,informal,"Hey, can you help me annotate a bacterial genome with Bakta in quiet mode?"
bakta,bakta_04,bakta_04_10,alternative,"With Bakta in quiet mode, annotate a bacterial genome"
bakta,bakta_05,bakta_05_01,original,annotate genome for NCBI submission with default parameters
bakta,bakta_05,bakta_05_02,beginner,How do I annotate genome for NCBI submission with default parameters?
bakta,bakta_05,bakta_05_03,student,I need to annotate genome for NCBI submission with default parameters
bakta,bakta_05,bakta_05_04,polite,Please annotate genome for NCBI submission with default parameters
bakta,bakta_05,bakta_05_05,sysadmin,Use bakta to annotate genome for NCBI submission with default parameters
bakta,bakta_05,bakta_05_06,goal_oriented,I want to annotate genome for NCBI submission with default parameters
bakta,bakta_05,bakta_05_07,expert,annotate genome NCBI submission default parameters
bakta,bakta_05,bakta_05_08,detailed,"I have data that I need to process: annotate genome for NCBI submission with default parameters, utilizing multiple CPU threads for speed, saving the result to a specified output file"
bakta,bakta_05,bakta_05_09,informal,"Hey, can you help me annotate genome for NCBI submission with default parameters?"
bakta,bakta_05,bakta_05_10,alternative,"With default parameters, annotate genome for NCBI submission"
bakta,bakta_06,bakta_06_01,original,annotate plasmid sequence with verbose output
bakta,bakta_06,bakta_06_02,beginner,How do I annotate plasmid sequence with verbose output?
bakta,bakta_06,bakta_06_03,student,I need to annotate plasmid sequence with verbose output
bakta,bakta_06,bakta_06_04,polite,Please annotate plasmid sequence with verbose output
bakta,bakta_06,bakta_06_05,sysadmin,Use bakta to annotate plasmid sequence with verbose output
bakta,bakta_06,bakta_06_06,goal_oriented,I want to annotate plasmid sequence with verbose output
bakta,bakta_06,bakta_06_07,expert,annotate plasmid sequence verbose output
bakta,bakta_06,bakta_06_08,detailed,"I have data that I need to process: annotate plasmid sequence with verbose output, utilizing multiple CPU threads for speed, saving the result to a specified output file"
bakta,bakta_06,bakta_06_09,informal,"Hey, can you help me annotate plasmid sequence with verbose output?"
bakta,bakta_06,bakta_06_10,alternative,"With verbose output, annotate plasmid sequence"
bakta,bakta_07,bakta_07_01,original,annotate a bacterial genome with Bakta using multiple threads
bakta,bakta_07,bakta_07_02,beginner,How do I annotate a bacterial genome with Bakta using multiple threads?
bakta,bakta_07,bakta_07_03,student,I need to annotate a bacterial genome with Bakta using multiple threads
bakta,bakta_07,bakta_07_04,polite,Please annotate a bacterial genome with Bakta using multiple threads
bakta,bakta_07,bakta_07_05,sysadmin,Use bakta to annotate a bacterial genome with Bakta using multiple threads
bakta,bakta_07,bakta_07_06,goal_oriented,I want to annotate a bacterial genome with Bakta using multiple threads
bakta,bakta_07,bakta_07_07,expert,annotate bacterial genome Bakta multiple threads
bakta,bakta_07,bakta_07_08,detailed,"I have data that I need to process: annotate a bacterial genome with Bakta using multiple threads, utilizing multiple CPU threads for speed, saving the result to a specified output file"
bakta,bakta_07,bakta_07_09,informal,"Hey, can you help me annotate a bacterial genome with Bakta using multiple threads?"
bakta,bakta_07,bakta_07_10,alternative,"With Bakta using multiple threads, annotate a bacterial genome"
bakta,bakta_08,bakta_08_01,original,annotate genome for NCBI submission and write output to a file
bakta,bakta_08,bakta_08_02,beginner,How do I annotate genome for NCBI submission and write output to a file?
bakta,bakta_08,bakta_08_03,student,I need to annotate genome for NCBI submission and write output to a file
bakta,bakta_08,bakta_08_04,polite,Please annotate genome for NCBI submission and write output to a file
bakta,bakta_08,bakta_08_05,sysadmin,Use bakta to annotate genome for NCBI submission and write output to a file
bakta,bakta_08,bakta_08_06,goal_oriented,I want to annotate genome for NCBI submission and write output to a file
bakta,bakta_08,bakta_08_07,expert,annotate genome NCBI submission write output file
bakta,bakta_08,bakta_08_08,detailed,"I have data that I need to process: annotate genome for NCBI submission and write output to a file, utilizing multiple CPU threads for speed, saving the result to a specified output file"
bakta,bakta_08,bakta_08_09,informal,"Hey, can you help me annotate genome for NCBI submission and write output to a file?"
bakta,bakta_08,bakta_08_10,alternative,Write output to a file after annotate genome for NCBI submission
bakta,bakta_09,bakta_09_01,original,annotate plasmid sequence in quiet mode
bakta,bakta_09,bakta_09_02,beginner,How do I annotate plasmid sequence in quiet mode?
bakta,bakta_09,bakta_09_03,student,I need to annotate plasmid sequence in quiet mode
bakta,bakta_09,bakta_09_04,polite,Please annotate plasmid sequence in quiet mode
bakta,bakta_09,bakta_09_05,sysadmin,Use bakta to annotate plasmid sequence in quiet mode
bakta,bakta_09,bakta_09_06,goal_oriented,I want to annotate plasmid sequence in quiet mode
bakta,bakta_09,bakta_09_07,expert,annotate plasmid sequence quiet mode
bakta,bakta_09,bakta_09_08,detailed,"I have data that I need to process: annotate plasmid sequence in quiet mode, utilizing multiple CPU threads for speed, saving the result to a specified output file"
bakta,bakta_09,bakta_09_09,informal,"Hey, can you help me annotate plasmid sequence in quiet mode?"
bakta,bakta_09,bakta_09_10,alternative,Perform: annotate plasmid sequence in quiet mode
bakta,bakta_10,bakta_10_01,original,annotate a bacterial genome with Bakta with default parameters
bakta,bakta_10,bakta_10_02,beginner,How do I annotate a bacterial genome with Bakta with default parameters?
bakta,bakta_10,bakta_10_03,student,I need to annotate a bacterial genome with Bakta with default parameters
bakta,bakta_10,bakta_10_04,polite,Please annotate a bacterial genome with Bakta with default parameters
bakta,bakta_10,bakta_10_05,sysadmin,Use bakta to annotate a bacterial genome with Bakta with default parameters
bakta,bakta_10,bakta_10_06,goal_oriented,I want to annotate a bacterial genome with Bakta with default parameters
bakta,bakta_10,bakta_10_07,expert,annotate bacterial genome Bakta default parameters
bakta,bakta_10,bakta_10_08,detailed,"I have data that I need to process: annotate a bacterial genome with Bakta with default parameters, utilizing multiple CPU threads for speed, saving the result to a specified output file"
bakta,bakta_10,bakta_10_09,informal,"Hey, can you help me annotate a bacterial genome with Bakta with default parameters?"
bakta,bakta_10,bakta_10_10,alternative,"With Bakta with default parameters, annotate a bacterial genome"
bamtools,bamtools_01,bamtools_01_01,original,get alignment statistics from a BAM file
bamtools,bamtools_01,bamtools_01_02,beginner,How do I get alignment statistics from a BAM file?
bamtools,bamtools_01,bamtools_01_03,student,I need to get alignment statistics from a BAM file
bamtools,bamtools_01,bamtools_01_04,polite,Please get alignment statistics from a BAM file
bamtools,bamtools_01,bamtools_01_05,sysadmin,Use bamtools to get alignment statistics from a BAM file
bamtools,bamtools_01,bamtools_01_06,goal_oriented,I want to get alignment statistics from a BAM file
bamtools,bamtools_01,bamtools_01_07,expert,get alignment statistics BAM file
bamtools,bamtools_01,bamtools_01_08,detailed,I have data that I need to process: get alignment statistics from a BAM file
bamtools,bamtools_01,bamtools_01_09,informal,"Hey, can you help me get alignment statistics from a BAM file?"
bamtools,bamtools_01,bamtools_01_10,alternative,Perform: get alignment statistics from a BAM file
bamtools,bamtools_02,bamtools_02_01,original,count aligned reads in a BAM file
bamtools,bamtools_02,bamtools_02_02,beginner,How do I count aligned reads in a BAM file?
bamtools,bamtools_02,bamtools_02_03,student,I need to count aligned reads in a BAM file
bamtools,bamtools_02,bamtools_02_04,polite,Please count aligned reads in a BAM file
bamtools,bamtools_02,bamtools_02_05,sysadmin,Use bamtools to count aligned reads in a BAM file
bamtools,bamtools_02,bamtools_02_06,goal_oriented,I want to count aligned reads in a BAM file
bamtools,bamtools_02,bamtools_02_07,expert,count aligned reads BAM file
bamtools,bamtools_02,bamtools_02_08,detailed,I have data that I need to process: count aligned reads in a BAM file
bamtools,bamtools_02,bamtools_02_09,informal,"Hey, can you help me count aligned reads in a BAM file?"
bamtools,bamtools_02,bamtools_02_10,alternative,Perform: count aligned reads in a BAM file
bamtools,bamtools_03,bamtools_03_01,original,"filter BAM to keep only mapped, properly paired reads"
bamtools,bamtools_03,bamtools_03_02,beginner,"How do I filter BAM to keep only mapped, properly paired reads?"
bamtools,bamtools_03,bamtools_03_03,student,"I need to filter BAM to keep only mapped, properly paired reads"
bamtools,bamtools_03,bamtools_03_04,polite,"Please filter BAM to keep only mapped, properly paired reads"
bamtools,bamtools_03,bamtools_03_05,sysadmin,"Use bamtools to filter BAM to keep only mapped, properly paired reads"
bamtools,bamtools_03,bamtools_03_06,goal_oriented,"I want to filter BAM to keep only mapped, properly paired reads"
bamtools,bamtools_03,bamtools_03_07,expert,"filter BAM keep only mapped, properly paired reads"
bamtools,bamtools_03,bamtools_03_08,detailed,"I have data that I need to process: filter BAM to keep only mapped, properly paired reads"
bamtools,bamtools_03,bamtools_03_09,informal,"Hey, can you help me filter BAM to keep only mapped, properly paired reads?"
bamtools,bamtools_03,bamtools_03_10,alternative,"Output keep only mapped, properly paired reads by performing: filter BAM"
bamtools,bamtools_04,bamtools_04_01,original,merge multiple BAM files
bamtools,bamtools_04,bamtools_04_02,beginner,How do I merge multiple BAM files?
bamtools,bamtools_04,bamtools_04_03,student,I need to merge multiple BAM files
bamtools,bamtools_04,bamtools_04_04,polite,Please merge multiple BAM files
bamtools,bamtools_04,bamtools_04_05,sysadmin,Use bamtools to merge multiple BAM files
bamtools,bamtools_04,bamtools_04_06,goal_oriented,I want to merge multiple BAM files
bamtools,bamtools_04,bamtools_04_07,expert,merge multiple BAM files
bamtools,bamtools_04,bamtools_04_08,detailed,I have data that I need to process: merge multiple BAM files
bamtools,bamtools_04,bamtools_04_09,informal,"Hey, can you help me merge multiple BAM files?"
bamtools,bamtools_04,bamtools_04_10,alternative,Perform: merge multiple BAM files
bamtools,bamtools_05,bamtools_05_01,original,convert BAM to FASTQ
bamtools,bamtools_05,bamtools_05_02,beginner,How do I convert BAM to FASTQ?
bamtools,bamtools_05,bamtools_05_03,student,I need to convert BAM to FASTQ
bamtools,bamtools_05,bamtools_05_04,polite,Please convert BAM to FASTQ
bamtools,bamtools_05,bamtools_05_05,sysadmin,Use bamtools to convert BAM to FASTQ
bamtools,bamtools_05,bamtools_05_06,goal_oriented,I want to convert BAM to FASTQ
bamtools,bamtools_05,bamtools_05_07,expert,convert BAM FASTQ
bamtools,bamtools_05,bamtools_05_08,detailed,I have data that I need to process: convert BAM to FASTQ
bamtools,bamtools_05,bamtools_05_09,informal,"Hey, can you help me convert BAM to FASTQ?"
bamtools,bamtools_05,bamtools_05_10,alternative,Output FASTQ by performing: convert BAM
bamtools,bamtools_06,bamtools_06_01,original,get alignment statistics from a BAM file
bamtools,bamtools_06,bamtools_06_02,beginner,How do I get alignment statistics from a BAM file?
bamtools,bamtools_06,bamtools_06_03,student,I need to get alignment statistics from a BAM file
bamtools,bamtools_06,bamtools_06_04,polite,Please get alignment statistics from a BAM file
bamtools,bamtools_06,bamtools_06_05,sysadmin,Use bamtools to get alignment statistics from a BAM file
bamtools,bamtools_06,bamtools_06_06,goal_oriented,I want to get alignment statistics from a BAM file
bamtools,bamtools_06,bamtools_06_07,expert,get alignment statistics BAM file
bamtools,bamtools_06,bamtools_06_08,detailed,I have data that I need to process: get alignment statistics from a BAM file
bamtools,bamtools_06,bamtools_06_09,informal,"Hey, can you help me get alignment statistics from a BAM file?"
bamtools,bamtools_06,bamtools_06_10,alternative,Perform: get alignment statistics from a BAM file
bamtools,bamtools_07,bamtools_07_01,original,count aligned reads in a BAM file using multiple threads
bamtools,bamtools_07,bamtools_07_02,beginner,How do I count aligned reads in a BAM file using multiple threads?
bamtools,bamtools_07,bamtools_07_03,student,I need to count aligned reads in a BAM file using multiple threads
bamtools,bamtools_07,bamtools_07_04,polite,Please count aligned reads in a BAM file using multiple threads
bamtools,bamtools_07,bamtools_07_05,sysadmin,Use bamtools to count aligned reads in a BAM file using multiple threads
bamtools,bamtools_07,bamtools_07_06,goal_oriented,I want to count aligned reads in a BAM file using multiple threads
bamtools,bamtools_07,bamtools_07_07,expert,count aligned reads BAM file multiple threads
bamtools,bamtools_07,bamtools_07_08,detailed,"I have data that I need to process: count aligned reads in a BAM file using multiple threads, utilizing multiple CPU threads for speed"
bamtools,bamtools_07,bamtools_07_09,informal,"Hey, can you help me count aligned reads in a BAM file using multiple threads?"
bamtools,bamtools_07,bamtools_07_10,alternative,Perform: count aligned reads in a BAM file using multiple threads
bamtools,bamtools_08,bamtools_08_01,original,"filter BAM to keep only mapped, properly paired reads and write output to a file"
bamtools,bamtools_08,bamtools_08_02,beginner,"How do I filter BAM to keep only mapped, properly paired reads and write output to a file?"
bamtools,bamtools_08,bamtools_08_03,student,"I need to filter BAM to keep only mapped, properly paired reads and write output to a file"
bamtools,bamtools_08,bamtools_08_04,polite,"Please filter BAM to keep only mapped, properly paired reads and write output to a file"
bamtools,bamtools_08,bamtools_08_05,sysadmin,"Use bamtools to filter BAM to keep only mapped, properly paired reads and write output to a file"
bamtools,bamtools_08,bamtools_08_06,goal_oriented,"I want to filter BAM to keep only mapped, properly paired reads and write output to a file"
bamtools,bamtools_08,bamtools_08_07,expert,"filter BAM keep only mapped, properly paired reads write output file"
bamtools,bamtools_08,bamtools_08_08,detailed,"I have data that I need to process: filter BAM to keep only mapped, properly paired reads and write output to a file, saving the result to a specified output file"
bamtools,bamtools_08,bamtools_08_09,informal,"Hey, can you help me filter BAM to keep only mapped, properly paired reads and write output to a file?"
bamtools,bamtools_08,bamtools_08_10,alternative,"Write output to a file after filter BAM to keep only mapped, properly paired reads"
bamtools,bamtools_09,bamtools_09_01,original,merge multiple BAM files in quiet mode
bamtools,bamtools_09,bamtools_09_02,beginner,How do I merge multiple BAM files in quiet mode?
bamtools,bamtools_09,bamtools_09_03,student,I need to merge multiple BAM files in quiet mode
bamtools,bamtools_09,bamtools_09_04,polite,Please merge multiple BAM files in quiet mode
bamtools,bamtools_09,bamtools_09_05,sysadmin,Use bamtools to merge multiple BAM files in quiet mode
bamtools,bamtools_09,bamtools_09_06,goal_oriented,I want to merge multiple BAM files in quiet mode
bamtools,bamtools_09,bamtools_09_07,expert,merge multiple BAM files quiet mode
bamtools,bamtools_09,bamtools_09_08,detailed,I have data that I need to process: merge multiple BAM files in quiet mode
bamtools,bamtools_09,bamtools_09_09,informal,"Hey, can you help me merge multiple BAM files in quiet mode?"
bamtools,bamtools_09,bamtools_09_10,alternative,Perform: merge multiple BAM files in quiet mode
bamtools,bamtools_10,bamtools_10_01,original,convert BAM to FASTQ with default parameters
bamtools,bamtools_10,bamtools_10_02,beginner,How do I convert BAM to FASTQ with default parameters?
bamtools,bamtools_10,bamtools_10_03,student,I need to convert BAM to FASTQ with default parameters
bamtools,bamtools_10,bamtools_10_04,polite,Please convert BAM to FASTQ with default parameters
bamtools,bamtools_10,bamtools_10_05,sysadmin,Use bamtools to convert BAM to FASTQ with default parameters
bamtools,bamtools_10,bamtools_10_06,goal_oriented,I want to convert BAM to FASTQ with default parameters
bamtools,bamtools_10,bamtools_10_07,expert,convert BAM FASTQ default parameters
bamtools,bamtools_10,bamtools_10_08,detailed,I have data that I need to process: convert BAM to FASTQ with default parameters
bamtools,bamtools_10,bamtools_10_09,informal,"Hey, can you help me convert BAM to FASTQ with default parameters?"
bamtools,bamtools_10,bamtools_10_10,alternative,"With default parameters, convert BAM to FASTQ"
bash,bash_01,bash_01_01,original,run a bash script
bash,bash_01,bash_01_02,beginner,How do I run a bash script?
bash,bash_01,bash_01_03,student,I need to run a bash script
bash,bash_01,bash_01_04,polite,Please run a bash script
bash,bash_01,bash_01_05,sysadmin,Use bash to run a bash script
bash,bash_01,bash_01_06,goal_oriented,I want to run a bash script
bash,bash_01,bash_01_07,expert,run bash script
bash,bash_01,bash_01_08,detailed,I have data that I need to process: run a bash script
bash,bash_01,bash_01_09,informal,"Hey, can you help me run a bash script?"
bash,bash_01,bash_01_10,alternative,Perform: run a bash script
bash,bash_02,bash_02_01,original,run a script with strict error handling
bash,bash_02,bash_02_02,beginner,How do I run a script with strict error handling?
bash,bash_02,bash_02_03,student,I need to run a script with strict error handling
bash,bash_02,bash_02_04,polite,Please run a script with strict error handling
bash,bash_02,bash_02_05,sysadmin,Use bash to run a script with strict error handling
bash,bash_02,bash_02_06,goal_oriented,I want to run a script with strict error handling
bash,bash_02,bash_02_07,expert,run script strict error handling
bash,bash_02,bash_02_08,detailed,I have data that I need to process: run a script with strict error handling
bash,bash_02,bash_02_09,informal,"Hey, can you help me run a script with strict error handling?"
bash,bash_02,bash_02_10,alternative,"With strict error handling, run a script"
bash,bash_03,bash_03_01,original,source a configuration file into the current shell
bash,bash_03,bash_03_02,beginner,How do I source a configuration file into the current shell?
bash,bash_03,bash_03_03,student,I need to source a configuration file into the current shell
bash,bash_03,bash_03_04,polite,Please source a configuration file into the current shell
bash,bash_03,bash_03_05,sysadmin,Use bash to source a configuration file into the current shell
bash,bash_03,bash_03_06,goal_oriented,I want to source a configuration file into the current shell
bash,bash_03,bash_03_07,expert,source configuration file current shell
bash,bash_03,bash_03_08,detailed,I have data that I need to process: source a configuration file into the current shell
bash,bash_03,bash_03_09,informal,"Hey, can you help me source a configuration file into the current shell?"
bash,bash_03,bash_03_10,alternative,Perform: source a configuration file into the current shell
bash,bash_04,bash_04_01,original,check bash version
bash,bash_04,bash_04_02,beginner,How do I check bash version?
bash,bash_04,bash_04_03,student,I need to check bash version
bash,bash_04,bash_04_04,polite,Please check bash version
bash,bash_04,bash_04_05,sysadmin,Use bash to check bash version
bash,bash_04,bash_04_06,goal_oriented,I want to check bash version
bash,bash_04,bash_04_07,expert,check bash version
bash,bash_04,bash_04_08,detailed,I have data that I need to process: check bash version
bash,bash_04,bash_04_09,informal,"Hey, can you help me check bash version?"
bash,bash_04,bash_04_10,alternative,Perform: check bash version
bash,bash_05,bash_05_01,original,run a script and print each command as it executes (debugging)
bash,bash_05,bash_05_02,beginner,How do I run a script and print each command as it executes (debugging)?
bash,bash_05,bash_05_03,student,I need to run a script and print each command as it executes (debugging)
bash,bash_05,bash_05_04,polite,Please run a script and print each command as it executes (debugging)
bash,bash_05,bash_05_05,sysadmin,Use bash to run a script and print each command as it executes (debugging)
bash,bash_05,bash_05_06,goal_oriented,I want to run a script and print each command as it executes (debugging)
bash,bash_05,bash_05_07,expert,run script print each command as it executes (debugging)
bash,bash_05,bash_05_08,detailed,I have data that I need to process: run a script and print each command as it executes (debugging)
bash,bash_05,bash_05_09,informal,"Hey, can you help me run a script and print each command as it executes (debugging)?"
bash,bash_05,bash_05_10,alternative,Print each command as it executes (debugging) after run a script
bash,bash_06,bash_06_01,original,list all loaded functions and aliases
bash,bash_06,bash_06_02,beginner,How do I list all loaded functions and aliases?
bash,bash_06,bash_06_03,student,I need to list all loaded functions and aliases
bash,bash_06,bash_06_04,polite,Please list all loaded functions and aliases
bash,bash_06,bash_06_05,sysadmin,Use bash to list all loaded functions and aliases
bash,bash_06,bash_06_06,goal_oriented,I want to list all loaded functions and aliases
bash,bash_06,bash_06_07,expert,list all loaded functions aliases
bash,bash_06,bash_06_08,detailed,I have data that I need to process: list all loaded functions and aliases
bash,bash_06,bash_06_09,informal,"Hey, can you help me list all loaded functions and aliases?"
bash,bash_06,bash_06_10,alternative,Aliases after list all loaded functions
bash,bash_07,bash_07_01,original,execute a command in a subshell without affecting the current environment
bash,bash_07,bash_07_02,beginner,How do I execute a command in a subshell without affecting the current environment?
bash,bash_07,bash_07_03,student,I need to execute a command in a subshell without affecting the current environment
bash,bash_07,bash_07_04,polite,Please execute a command in a subshell without affecting the current environment
bash,bash_07,bash_07_05,sysadmin,Use bash to execute a command in a subshell without affecting the current environment
bash,bash_07,bash_07_06,goal_oriented,I want to execute a command in a subshell without affecting the current environment
bash,bash_07,bash_07_07,expert,execute command subshell without affecting current environment
bash,bash_07,bash_07_08,detailed,I have data that I need to process: execute a command in a subshell without affecting the current environment
bash,bash_07,bash_07_09,informal,"Hey, can you help me execute a command in a subshell without affecting the current environment?"
bash,bash_07,bash_07_10,alternative,Perform: execute a command in a subshell without affecting the current environment
bash,bash_08,bash_08_01,original,write a multi-command pipeline using process substitution
bash,bash_08,bash_08_02,beginner,How do I write a multi-command pipeline using process substitution?
bash,bash_08,bash_08_03,student,I need to write a multi-command pipeline using process substitution
bash,bash_08,bash_08_04,polite,Please write a multi-command pipeline using process substitution
bash,bash_08,bash_08_05,sysadmin,Use bash to write a multi-command pipeline using process substitution
bash,bash_08,bash_08_06,goal_oriented,I want to write a multi-command pipeline using process substitution
bash,bash_08,bash_08_07,expert,write multi-command pipeline process substitution
bash,bash_08,bash_08_08,detailed,I have data that I need to process: write a multi-command pipeline using process substitution
bash,bash_08,bash_08_09,informal,"Hey, can you help me write a multi-command pipeline using process substitution?"
bash,bash_08,bash_08_10,alternative,Perform: write a multi-command pipeline using process substitution
bash,bash_09,bash_09_01,original,run a background pipeline job and capture its PID
bash,bash_09,bash_09_02,beginner,How do I run a background pipeline job and capture its PID?
bash,bash_09,bash_09_03,student,I need to run a background pipeline job and capture its PID
bash,bash_09,bash_09_04,polite,Please run a background pipeline job and capture its PID
bash,bash_09,bash_09_05,sysadmin,Use bash to run a background pipeline job and capture its PID
bash,bash_09,bash_09_06,goal_oriented,I want to run a background pipeline job and capture its PID
bash,bash_09,bash_09_07,expert,run background pipeline job capture its PID
bash,bash_09,bash_09_08,detailed,I have data that I need to process: run a background pipeline job and capture its PID
bash,bash_09,bash_09_09,informal,"Hey, can you help me run a background pipeline job and capture its PID?"
bash,bash_09,bash_09_10,alternative,Capture its PID after run a background pipeline job
bash,bash_10,bash_10_01,original,loop over a list of files and process each
bash,bash_10,bash_10_02,beginner,How do I loop over a list of files and process each?
bash,bash_10,bash_10_03,student,I need to loop over a list of files and process each
bash,bash_10,bash_10_04,polite,Please loop over a list of files and process each
bash,bash_10,bash_10_05,sysadmin,Use bash to loop over a list of files and process each
bash,bash_10,bash_10_06,goal_oriented,I want to loop over a list of files and process each
bash,bash_10,bash_10_07,expert,loop over list of files process each
bash,bash_10,bash_10_08,detailed,I have data that I need to process: loop over a list of files and process each
bash,bash_10,bash_10_09,informal,"Hey, can you help me loop over a list of files and process each?"
bash,bash_10,bash_10_10,alternative,Process each after loop over a list of files
bbtools,bbtools_01,bbtools_01_01,original,trim adapters and quality-filter with BBDuk
bbtools,bbtools_01,bbtools_01_02,beginner,How do I trim adapters and quality-filter with BBDuk?
bbtools,bbtools_01,bbtools_01_03,student,I need to trim adapters and quality-filter with BBDuk
bbtools,bbtools_01,bbtools_01_04,polite,Please trim adapters and quality-filter with BBDuk
bbtools,bbtools_01,bbtools_01_05,sysadmin,Use bbtools to trim adapters and quality-filter with BBDuk
bbtools,bbtools_01,bbtools_01_06,goal_oriented,I want to trim adapters and quality-filter with BBDuk
bbtools,bbtools_01,bbtools_01_07,expert,trim adapters quality-filter BBDuk
bbtools,bbtools_01,bbtools_01_08,detailed,I have data that I need to process: trim adapters and quality-filter with BBDuk
bbtools,bbtools_01,bbtools_01_09,informal,"Hey, can you help me trim adapters and quality-filter with BBDuk?"
bbtools,bbtools_01,bbtools_01_10,alternative,Quality-filter with BBDuk after trim adapters
bbtools,bbtools_02,bbtools_02_01,original,remove PhiX contamination from a FASTQ
bbtools,bbtools_02,bbtools_02_02,beginner,How do I remove PhiX contamination from a FASTQ?
bbtools,bbtools_02,bbtools_02_03,student,I need to remove PhiX contamination from a FASTQ
bbtools,bbtools_02,bbtools_02_04,polite,Please remove PhiX contamination from a FASTQ
bbtools,bbtools_02,bbtools_02_05,sysadmin,Use bbtools to remove PhiX contamination from a FASTQ
bbtools,bbtools_02,bbtools_02_06,goal_oriented,I want to remove PhiX contamination from a FASTQ
bbtools,bbtools_02,bbtools_02_07,expert,remove PhiX contamination FASTQ
bbtools,bbtools_02,bbtools_02_08,detailed,I have data that I need to process: remove PhiX contamination from a FASTQ
bbtools,bbtools_02,bbtools_02_09,informal,"Hey, can you help me remove PhiX contamination from a FASTQ?"
bbtools,bbtools_02,bbtools_02_10,alternative,Perform: remove PhiX contamination from a FASTQ
bbtools,bbtools_03,bbtools_03_01,original,align reads to a reference genome
bbtools,bbtools_03,bbtools_03_02,beginner,How do I align reads to a reference genome?
bbtools,bbtools_03,bbtools_03_03,student,I need to align reads to a reference genome
bbtools,bbtools_03,bbtools_03_04,polite,Please align reads to a reference genome
bbtools,bbtools_03,bbtools_03_05,sysadmin,Use bbtools to align reads to a reference genome
bbtools,bbtools_03,bbtools_03_06,goal_oriented,I want to align reads to a reference genome
bbtools,bbtools_03,bbtools_03_07,expert,align reads reference genome
bbtools,bbtools_03,bbtools_03_08,detailed,I have data that I need to process: align reads to a reference genome
bbtools,bbtools_03,bbtools_03_09,informal,"Hey, can you help me align reads to a reference genome?"
bbtools,bbtools_03,bbtools_03_10,alternative,Output a reference genome by performing: align reads
bbtools,bbtools_04,bbtools_04_01,original,merge overlapping paired-end reads
bbtools,bbtools_04,bbtools_04_02,beginner,How do I merge overlapping paired-end reads?
bbtools,bbtools_04,bbtools_04_03,student,I need to merge overlapping paired-end reads
bbtools,bbtools_04,bbtools_04_04,polite,Please merge overlapping paired-end reads
bbtools,bbtools_04,bbtools_04_05,sysadmin,Use bbtools to merge overlapping paired-end reads
bbtools,bbtools_04,bbtools_04_06,goal_oriented,I want to merge overlapping paired-end reads
bbtools,bbtools_04,bbtools_04_07,expert,merge overlapping paired-end reads
bbtools,bbtools_04,bbtools_04_08,detailed,I have data that I need to process: merge overlapping paired-end reads
bbtools,bbtools_04,bbtools_04_09,informal,"Hey, can you help me merge overlapping paired-end reads?"
bbtools,bbtools_04,bbtools_04_10,alternative,Perform: merge overlapping paired-end reads
bbtools,bbtools_05,bbtools_05_01,original,subsample a FASTQ file to a specific number of reads
bbtools,bbtools_05,bbtools_05_02,beginner,How do I subsample a FASTQ file to a specific number of reads?
bbtools,bbtools_05,bbtools_05_03,student,I need to subsample a FASTQ file to a specific number of reads
bbtools,bbtools_05,bbtools_05_04,polite,Please subsample a FASTQ file to a specific number of reads
bbtools,bbtools_05,bbtools_05_05,sysadmin,Use bbtools to subsample a FASTQ file to a specific number of reads
bbtools,bbtools_05,bbtools_05_06,goal_oriented,I want to subsample a FASTQ file to a specific number of reads
bbtools,bbtools_05,bbtools_05_07,expert,subsample FASTQ file specific number of reads
bbtools,bbtools_05,bbtools_05_08,detailed,I have data that I need to process: subsample a FASTQ file to a specific number of reads
bbtools,bbtools_05,bbtools_05_09,informal,"Hey, can you help me subsample a FASTQ file to a specific number of reads?"
bbtools,bbtools_05,bbtools_05_10,alternative,Output a specific number of reads by performing: subsample a FASTQ file
bbtools,bbtools_06,bbtools_06_01,original,convert FASTQ to FASTA
bbtools,bbtools_06,bbtools_06_02,beginner,How do I convert FASTQ to FASTA?
bbtools,bbtools_06,bbtools_06_03,student,I need to convert FASTQ to FASTA
bbtools,bbtools_06,bbtools_06_04,polite,Please convert FASTQ to FASTA
bbtools,bbtools_06,bbtools_06_05,sysadmin,Use bbtools to convert FASTQ to FASTA
bbtools,bbtools_06,bbtools_06_06,goal_oriented,I want to convert FASTQ to FASTA
bbtools,bbtools_06,bbtools_06_07,expert,convert FASTQ FASTA
bbtools,bbtools_06,bbtools_06_08,detailed,I have data that I need to process: convert FASTQ to FASTA
bbtools,bbtools_06,bbtools_06_09,informal,"Hey, can you help me convert FASTQ to FASTA?"
bbtools,bbtools_06,bbtools_06_10,alternative,Output FASTA by performing: convert FASTQ
bbtools,bbtools_07,bbtools_07_01,original,remove host reads before metagenomics analysis
bbtools,bbtools_07,bbtools_07_02,beginner,How do I remove host reads before metagenomics analysis?
bbtools,bbtools_07,bbtools_07_03,student,I need to remove host reads before metagenomics analysis
bbtools,bbtools_07,bbtools_07_04,polite,Please remove host reads before metagenomics analysis
bbtools,bbtools_07,bbtools_07_05,sysadmin,Use bbtools to remove host reads before metagenomics analysis
bbtools,bbtools_07,bbtools_07_06,goal_oriented,I want to remove host reads before metagenomics analysis
bbtools,bbtools_07,bbtools_07_07,expert,remove host reads before metagenomics analysis
bbtools,bbtools_07,bbtools_07_08,detailed,I have data that I need to process: remove host reads before metagenomics analysis
bbtools,bbtools_07,bbtools_07_09,informal,"Hey, can you help me remove host reads before metagenomics analysis?"
bbtools,bbtools_07,bbtools_07_10,alternative,Perform: remove host reads before metagenomics analysis
bbtools,bbtools_08,bbtools_08_01,original,get detailed statistics for a FASTQ file
bbtools,bbtools_08,bbtools_08_02,beginner,How do I get detailed statistics for a FASTQ file?
bbtools,bbtools_08,bbtools_08_03,student,I need to get detailed statistics for a FASTQ file
bbtools,bbtools_08,bbtools_08_04,polite,Please get detailed statistics for a FASTQ file
bbtools,bbtools_08,bbtools_08_05,sysadmin,Use bbtools to get detailed statistics for a FASTQ file
bbtools,bbtools_08,bbtools_08_06,goal_oriented,I want to get detailed statistics for a FASTQ file
bbtools,bbtools_08,bbtools_08_07,expert,get detailed statistics FASTQ file
bbtools,bbtools_08,bbtools_08_08,detailed,I have data that I need to process: get detailed statistics for a FASTQ file
bbtools,bbtools_08,bbtools_08_09,informal,"Hey, can you help me get detailed statistics for a FASTQ file?"
bbtools,bbtools_08,bbtools_08_10,alternative,Perform: get detailed statistics for a FASTQ file
bbtools,bbtools_09,bbtools_09_01,original,remove duplicate reads with dedupe.sh
bbtools,bbtools_09,bbtools_09_02,beginner,How do I remove duplicate reads with dedupe.sh?
bbtools,bbtools_09,bbtools_09_03,student,I need to remove duplicate reads with dedupe.sh
bbtools,bbtools_09,bbtools_09_04,polite,Please remove duplicate reads with dedupe.sh
bbtools,bbtools_09,bbtools_09_05,sysadmin,Use bbtools to remove duplicate reads with dedupe.sh
bbtools,bbtools_09,bbtools_09_06,goal_oriented,I want to remove duplicate reads with dedupe.sh
bbtools,bbtools_09,bbtools_09_07,expert,remove duplicate reads dedupe.sh
bbtools,bbtools_09,bbtools_09_08,detailed,I have data that I need to process: remove duplicate reads with dedupe.sh
bbtools,bbtools_09,bbtools_09_09,informal,"Hey, can you help me remove duplicate reads with dedupe.sh?"
bbtools,bbtools_09,bbtools_09_10,alternative,"With dedupe.sh, remove duplicate reads"
bbtools,bbtools_10,bbtools_10_01,original,split reads by genome of origin for metagenomics
bbtools,bbtools_10,bbtools_10_02,beginner,How do I split reads by genome of origin for metagenomics?
bbtools,bbtools_10,bbtools_10_03,student,I need to split reads by genome of origin for metagenomics
bbtools,bbtools_10,bbtools_10_04,polite,Please split reads by genome of origin for metagenomics
bbtools,bbtools_10,bbtools_10_05,sysadmin,Use bbtools to split reads by genome of origin for metagenomics
bbtools,bbtools_10,bbtools_10_06,goal_oriented,I want to split reads by genome of origin for metagenomics
bbtools,bbtools_10,bbtools_10_07,expert,split reads by genome of origin metagenomics
bbtools,bbtools_10,bbtools_10_08,detailed,I have data that I need to process: split reads by genome of origin for metagenomics
bbtools,bbtools_10,bbtools_10_09,informal,"Hey, can you help me split reads by genome of origin for metagenomics?"
bbtools,bbtools_10,bbtools_10_10,alternative,Perform: split reads by genome of origin for metagenomics
bcftools,bcftools_01,bcftools_01_01,original,call variants from a BAM file against a reference genome
bcftools,bcftools_01,bcftools_01_02,beginner,How do I call variants from a BAM file against a reference genome?
bcftools,bcftools_01,bcftools_01_03,student,I need to call variants from a BAM file against a reference genome
bcftools,bcftools_01,bcftools_01_04,polite,Please call variants from a BAM file against a reference genome
bcftools,bcftools_01,bcftools_01_05,sysadmin,Use bcftools to call variants from a BAM file against a reference genome
bcftools,bcftools_01,bcftools_01_06,goal_oriented,I want to call variants from a BAM file against a reference genome
bcftools,bcftools_01,bcftools_01_07,expert,call variants BAM file against reference genome
bcftools,bcftools_01,bcftools_01_08,detailed,"I have data that I need to process: call variants from a BAM file against a reference genome, saving the result to a specified output file"
bcftools,bcftools_01,bcftools_01_09,informal,"Hey, can you help me call variants from a BAM file against a reference genome?"
bcftools,bcftools_01,bcftools_01_10,alternative,Perform: call variants from a BAM file against a reference genome
bcftools,bcftools_02,bcftools_02_01,original,"filter VCF to keep only high-quality SNPs (QUAL > 30, depth > 10)"
bcftools,bcftools_02,bcftools_02_02,beginner,"How do I filter VCF to keep only high-quality SNPs (QUAL > 30, depth > 10)?"
bcftools,bcftools_02,bcftools_02_03,student,"I need to filter VCF to keep only high-quality SNPs (QUAL > 30, depth > 10)"
bcftools,bcftools_02,bcftools_02_04,polite,"Please filter VCF to keep only high-quality SNPs (QUAL > 30, depth > 10)"
bcftools,bcftools_02,bcftools_02_05,sysadmin,"Use bcftools to filter VCF to keep only high-quality SNPs (QUAL > 30, depth > 10)"
bcftools,bcftools_02,bcftools_02_06,goal_oriented,"I want to filter VCF to keep only high-quality SNPs (QUAL > 30, depth > 10)"
bcftools,bcftools_02,bcftools_02_07,expert,"filter VCF keep only high-quality SNPs (QUAL > 30, depth > 10)"
bcftools,bcftools_02,bcftools_02_08,detailed,"I have data that I need to process: filter VCF to keep only high-quality SNPs (QUAL > 30, depth > 10), saving the result to a specified output file"
bcftools,bcftools_02,bcftools_02_09,informal,"Hey, can you help me filter VCF to keep only high-quality SNPs (QUAL > 30, depth > 10)?"
bcftools,bcftools_02,bcftools_02_10,alternative,"Output keep only high-quality SNPs (QUAL > 30, depth > 10) by performing: filter VCF"
bcftools,bcftools_03,bcftools_03_01,original,merge multiple VCF files from different samples
bcftools,bcftools_03,bcftools_03_02,beginner,How do I merge multiple VCF files from different samples?
bcftools,bcftools_03,bcftools_03_03,student,I need to merge multiple VCF files from different samples
bcftools,bcftools_03,bcftools_03_04,polite,Please merge multiple VCF files from different samples
bcftools,bcftools_03,bcftools_03_05,sysadmin,Use bcftools to merge multiple VCF files from different samples
bcftools,bcftools_03,bcftools_03_06,goal_oriented,I want to merge multiple VCF files from different samples
bcftools,bcftools_03,bcftools_03_07,expert,merge multiple VCF files different samples
bcftools,bcftools_03,bcftools_03_08,detailed,"I have data that I need to process: merge multiple VCF files from different samples, saving the result to a specified output file"
bcftools,bcftools_03,bcftools_03_09,informal,"Hey, can you help me merge multiple VCF files from different samples?"
bcftools,bcftools_03,bcftools_03_10,alternative,Perform: merge multiple VCF files from different samples
bcftools,bcftools_04,bcftools_04_01,original,extract a specific sample from a multi-sample VCF
bcftools,bcftools_04,bcftools_04_02,beginner,How do I extract a specific sample from a multi-sample VCF?
bcftools,bcftools_04,bcftools_04_03,student,I need to extract a specific sample from a multi-sample VCF
bcftools,bcftools_04,bcftools_04_04,polite,Please extract a specific sample from a multi-sample VCF
bcftools,bcftools_04,bcftools_04_05,sysadmin,Use bcftools to extract a specific sample from a multi-sample VCF
bcftools,bcftools_04,bcftools_04_06,goal_oriented,I want to extract a specific sample from a multi-sample VCF
bcftools,bcftools_04,bcftools_04_07,expert,extract specific sample multi-sample VCF
bcftools,bcftools_04,bcftools_04_08,detailed,"I have data that I need to process: extract a specific sample from a multi-sample VCF, saving the result to a specified output file"
bcftools,bcftools_04,bcftools_04_09,informal,"Hey, can you help me extract a specific sample from a multi-sample VCF?"
bcftools,bcftools_04,bcftools_04_10,alternative,Perform: extract a specific sample from a multi-sample VCF
bcftools,bcftools_05,bcftools_05_01,original,normalize indels and split multi-allelic variants
bcftools,bcftools_05,bcftools_05_02,beginner,How do I normalize indels and split multi-allelic variants?
bcftools,bcftools_05,bcftools_05_03,student,I need to normalize indels and split multi-allelic variants
bcftools,bcftools_05,bcftools_05_04,polite,Please normalize indels and split multi-allelic variants
bcftools,bcftools_05,bcftools_05_05,sysadmin,Use bcftools to normalize indels and split multi-allelic variants
bcftools,bcftools_05,bcftools_05_06,goal_oriented,I want to normalize indels and split multi-allelic variants
bcftools,bcftools_05,bcftools_05_07,expert,normalize indels split multi-allelic variants
bcftools,bcftools_05,bcftools_05_08,detailed,"I have data that I need to process: normalize indels and split multi-allelic variants, saving the result to a specified output file"
bcftools,bcftools_05,bcftools_05_09,informal,"Hey, can you help me normalize indels and split multi-allelic variants?"
bcftools,bcftools_05,bcftools_05_10,alternative,Split multi-allelic variants after normalize indels
bcftools,bcftools_06,bcftools_06_01,original,compute variant statistics for a VCF file
bcftools,bcftools_06,bcftools_06_02,beginner,How do I compute variant statistics for a VCF file?
bcftools,bcftools_06,bcftools_06_03,student,I need to compute variant statistics for a VCF file
bcftools,bcftools_06,bcftools_06_04,polite,Please compute variant statistics for a VCF file
bcftools,bcftools_06,bcftools_06_05,sysadmin,Use bcftools to compute variant statistics for a VCF file
bcftools,bcftools_06,bcftools_06_06,goal_oriented,I want to compute variant statistics for a VCF file
bcftools,bcftools_06,bcftools_06_07,expert,compute variant statistics VCF file
bcftools,bcftools_06,bcftools_06_08,detailed,I have data that I need to process: compute variant statistics for a VCF file
bcftools,bcftools_06,bcftools_06_09,informal,"Hey, can you help me compute variant statistics for a VCF file?"
bcftools,bcftools_06,bcftools_06_10,alternative,Perform: compute variant statistics for a VCF file
bcftools,bcftools_07,bcftools_07_01,original,select only SNPs from a VCF file
bcftools,bcftools_07,bcftools_07_02,beginner,How do I select only SNPs from a VCF file?
bcftools,bcftools_07,bcftools_07_03,student,I need to select only SNPs from a VCF file
bcftools,bcftools_07,bcftools_07_04,polite,Please select only SNPs from a VCF file
bcftools,bcftools_07,bcftools_07_05,sysadmin,Use bcftools to select only SNPs from a VCF file
bcftools,bcftools_07,bcftools_07_06,goal_oriented,I want to select only SNPs from a VCF file
bcftools,bcftools_07,bcftools_07_07,expert,select only SNPs VCF file
bcftools,bcftools_07,bcftools_07_08,detailed,"I have data that I need to process: select only SNPs from a VCF file, saving the result to a specified output file"
bcftools,bcftools_07,bcftools_07_09,informal,"Hey, can you help me select only SNPs from a VCF file?"
bcftools,bcftools_07,bcftools_07_10,alternative,Perform: select only SNPs from a VCF file
bcftools,bcftools_08,bcftools_08_01,original,annotate VCF with a reference VCF (add ID field from dbSNP)
bcftools,bcftools_08,bcftools_08_02,beginner,How do I annotate VCF with a reference VCF (add ID field from dbSNP)?
bcftools,bcftools_08,bcftools_08_03,student,I need to annotate VCF with a reference VCF (add ID field from dbSNP)
bcftools,bcftools_08,bcftools_08_04,polite,Please annotate VCF with a reference VCF (add ID field from dbSNP)
bcftools,bcftools_08,bcftools_08_05,sysadmin,Use bcftools to annotate VCF with a reference VCF (add ID field from dbSNP)
bcftools,bcftools_08,bcftools_08_06,goal_oriented,I want to annotate VCF with a reference VCF (add ID field from dbSNP)
bcftools,bcftools_08,bcftools_08_07,expert,annotate VCF reference VCF (add ID field dbSNP)
bcftools,bcftools_08,bcftools_08_08,detailed,"I have data that I need to process: annotate VCF with a reference VCF (add ID field from dbSNP), saving the result to a specified output file"
bcftools,bcftools_08,bcftools_08_09,informal,"Hey, can you help me annotate VCF with a reference VCF (add ID field from dbSNP)?"
bcftools,bcftools_08,bcftools_08_10,alternative,"With a reference VCF (add ID field from dbSNP), annotate VCF"
bcftools,bcftools_09,bcftools_09_01,original,call variants from a BAM file against a reference genome
bcftools,bcftools_09,bcftools_09_02,beginner,How do I call variants from a BAM file against a reference genome?
bcftools,bcftools_09,bcftools_09_03,student,I need to call variants from a BAM file against a reference genome
bcftools,bcftools_09,bcftools_09_04,polite,Please call variants from a BAM file against a reference genome
bcftools,bcftools_09,bcftools_09_05,sysadmin,Use bcftools to call variants from a BAM file against a reference genome
bcftools,bcftools_09,bcftools_09_06,goal_oriented,I want to call variants from a BAM file against a reference genome
bcftools,bcftools_09,bcftools_09_07,expert,call variants BAM file against reference genome
bcftools,bcftools_09,bcftools_09_08,detailed,"I have data that I need to process: call variants from a BAM file against a reference genome, saving the result to a specified output file"
bcftools,bcftools_09,bcftools_09_09,informal,"Hey, can you help me call variants from a BAM file against a reference genome?"
bcftools,bcftools_09,bcftools_09_10,alternative,Perform: call variants from a BAM file against a reference genome
bcftools,bcftools_10,bcftools_10_01,original,"filter VCF to keep only high-quality SNPs (QUAL > 30, depth > 10) with default parameters"
bcftools,bcftools_10,bcftools_10_02,beginner,"How do I filter VCF to keep only high-quality SNPs (QUAL > 30, depth > 10) with default parameters?"
bcftools,bcftools_10,bcftools_10_03,student,"I need to filter VCF to keep only high-quality SNPs (QUAL > 30, depth > 10) with default parameters"
bcftools,bcftools_10,bcftools_10_04,polite,"Please filter VCF to keep only high-quality SNPs (QUAL > 30, depth > 10) with default parameters"
bcftools,bcftools_10,bcftools_10_05,sysadmin,"Use bcftools to filter VCF to keep only high-quality SNPs (QUAL > 30, depth > 10) with default parameters"
bcftools,bcftools_10,bcftools_10_06,goal_oriented,"I want to filter VCF to keep only high-quality SNPs (QUAL > 30, depth > 10) with default parameters"
bcftools,bcftools_10,bcftools_10_07,expert,"filter VCF keep only high-quality SNPs (QUAL > 30, depth > 10) default parameters"
bcftools,bcftools_10,bcftools_10_08,detailed,"I have data that I need to process: filter VCF to keep only high-quality SNPs (QUAL > 30, depth > 10) with default parameters, saving the result to a specified output file"
bcftools,bcftools_10,bcftools_10_09,informal,"Hey, can you help me filter VCF to keep only high-quality SNPs (QUAL > 30, depth > 10) with default parameters?"
bcftools,bcftools_10,bcftools_10_10,alternative,"With default parameters, filter VCF to keep only high-quality SNPs (QUAL > 30, depth > 10)"
bedops,bedops_01,bedops_01_01,original,sort a BED file for use with BEDOPS tools
bedops,bedops_01,bedops_01_02,beginner,How do I sort a BED file for use with BEDOPS tools?
bedops,bedops_01,bedops_01_03,student,I need to sort a BED file for use with BEDOPS tools
bedops,bedops_01,bedops_01_04,polite,Please sort a BED file for use with BEDOPS tools
bedops,bedops_01,bedops_01_05,sysadmin,Use bedops to sort a BED file for use with BEDOPS tools
bedops,bedops_01,bedops_01_06,goal_oriented,I want to sort a BED file for use with BEDOPS tools
bedops,bedops_01,bedops_01_07,expert,sort BED file use BEDOPS tools
bedops,bedops_01,bedops_01_08,detailed,I have data that I need to process: sort a BED file for use with BEDOPS tools
bedops,bedops_01,bedops_01_09,informal,"Hey, can you help me sort a BED file for use with BEDOPS tools?"
bedops,bedops_01,bedops_01_10,alternative,"With BEDOPS tools, sort a BED file for use"
bedops,bedops_02,bedops_02_01,original,intersect two sorted BED files (intervals present in both)
bedops,bedops_02,bedops_02_02,beginner,How do I intersect two sorted BED files (intervals present in both)?
bedops,bedops_02,bedops_02_03,student,I need to intersect two sorted BED files (intervals present in both)
bedops,bedops_02,bedops_02_04,polite,Please intersect two sorted BED files (intervals present in both)
bedops,bedops_02,bedops_02_05,sysadmin,Use bedops to intersect two sorted BED files (intervals present in both)
bedops,bedops_02,bedops_02_06,goal_oriented,I want to intersect two sorted BED files (intervals present in both)
bedops,bedops_02,bedops_02_07,expert,intersect two sorted BED files (intervals present both)
bedops,bedops_02,bedops_02_08,detailed,I have data that I need to process: intersect two sorted BED files (intervals present in both)
bedops,bedops_02,bedops_02_09,informal,"Hey, can you help me intersect two sorted BED files (intervals present in both)?"
bedops,bedops_02,bedops_02_10,alternative,Perform: intersect two sorted BED files (intervals present in both)
bedops,bedops_03,bedops_03_01,original,find intervals in file A that do not overlap file B
bedops,bedops_03,bedops_03_02,beginner,How do I find intervals in file A that do not overlap file B?
bedops,bedops_03,bedops_03_03,student,I need to find intervals in file A that do not overlap file B
bedops,bedops_03,bedops_03_04,polite,Please find intervals in file A that do not overlap file B
bedops,bedops_03,bedops_03_05,sysadmin,Use bedops to find intervals in file A that do not overlap file B
bedops,bedops_03,bedops_03_06,goal_oriented,I want to find intervals in file A that do not overlap file B
bedops,bedops_03,bedops_03_07,expert,find intervals file that do not overlap file B
bedops,bedops_03,bedops_03_08,detailed,I have data that I need to process: find intervals in file A that do not overlap file B
bedops,bedops_03,bedops_03_09,informal,"Hey, can you help me find intervals in file A that do not overlap file B?"
bedops,bedops_03,bedops_03_10,alternative,Perform: find intervals in file A that do not overlap file B
bedops,bedops_04,bedops_04_01,original,compute coverage (sum of signal) from bigwig/bedgraph mapped to gene windows
bedops,bedops_04,bedops_04_02,beginner,How do I compute coverage (sum of signal) from bigwig/bedgraph mapped to gene windows?
bedops,bedops_04,bedops_04_03,student,I need to compute coverage (sum of signal) from bigwig/bedgraph mapped to gene windows
bedops,bedops_04,bedops_04_04,polite,Please compute coverage (sum of signal) from bigwig/bedgraph mapped to gene windows
bedops,bedops_04,bedops_04_05,sysadmin,Use bedops to compute coverage (sum of signal) from bigwig/bedgraph mapped to gene windows
bedops,bedops_04,bedops_04_06,goal_oriented,I want to compute coverage (sum of signal) from bigwig/bedgraph mapped to gene windows
bedops,bedops_04,bedops_04_07,expert,compute coverage (sum of signal) bigwig/bedgraph mapped gene windows
bedops,bedops_04,bedops_04_08,detailed,I have data that I need to process: compute coverage (sum of signal) from bigwig/bedgraph mapped to gene windows
bedops,bedops_04,bedops_04_09,informal,"Hey, can you help me compute coverage (sum of signal) from bigwig/bedgraph mapped to gene windows?"
bedops,bedops_04,bedops_04_10,alternative,Output gene windows by performing: compute coverage (sum of signal) from bigwig/bedgraph mapped
bedops,bedops_05,bedops_05_01,original,compress a sorted BED file to starch format
bedops,bedops_05,bedops_05_02,beginner,How do I compress a sorted BED file to starch format?
bedops,bedops_05,bedops_05_03,student,I need to compress a sorted BED file to starch format
bedops,bedops_05,bedops_05_04,polite,Please compress a sorted BED file to starch format
bedops,bedops_05,bedops_05_05,sysadmin,Use bedops to compress a sorted BED file to starch format
bedops,bedops_05,bedops_05_06,goal_oriented,I want to compress a sorted BED file to starch format
bedops,bedops_05,bedops_05_07,expert,compress sorted BED file starch format
bedops,bedops_05,bedops_05_08,detailed,I have data that I need to process: compress a sorted BED file to starch format
bedops,bedops_05,bedops_05_09,informal,"Hey, can you help me compress a sorted BED file to starch format?"
bedops,bedops_05,bedops_05_10,alternative,Output starch format by performing: compress a sorted BED file
bedops,bedops_06,bedops_06_01,original,extract all intervals overlapping a specific region
bedops,bedops_06,bedops_06_02,beginner,How do I extract all intervals overlapping a specific region?
bedops,bedops_06,bedops_06_03,student,I need to extract all intervals overlapping a specific region
bedops,bedops_06,bedops_06_04,polite,Please extract all intervals overlapping a specific region
bedops,bedops_06,bedops_06_05,sysadmin,Use bedops to extract all intervals overlapping a specific region
bedops,bedops_06,bedops_06_06,goal_oriented,I want to extract all intervals overlapping a specific region
bedops,bedops_06,bedops_06_07,expert,extract all intervals overlapping specific region
bedops,bedops_06,bedops_06_08,detailed,I have data that I need to process: extract all intervals overlapping a specific region
bedops,bedops_06,bedops_06_09,informal,"Hey, can you help me extract all intervals overlapping a specific region?"
bedops,bedops_06,bedops_06_10,alternative,Perform: extract all intervals overlapping a specific region
bedops,bedops_07,bedops_07_01,original,merge overlapping intervals and compute union across three BED files
bedops,bedops_07,bedops_07_02,beginner,How do I merge overlapping intervals and compute union across three BED files?
bedops,bedops_07,bedops_07_03,student,I need to merge overlapping intervals and compute union across three BED files
bedops,bedops_07,bedops_07_04,polite,Please merge overlapping intervals and compute union across three BED files
bedops,bedops_07,bedops_07_05,sysadmin,Use bedops to merge overlapping intervals and compute union across three BED files
bedops,bedops_07,bedops_07_06,goal_oriented,I want to merge overlapping intervals and compute union across three BED files
bedops,bedops_07,bedops_07_07,expert,merge overlapping intervals compute union across three BED files
bedops,bedops_07,bedops_07_08,detailed,I have data that I need to process: merge overlapping intervals and compute union across three BED files
bedops,bedops_07,bedops_07_09,informal,"Hey, can you help me merge overlapping intervals and compute union across three BED files?"
bedops,bedops_07,bedops_07_10,alternative,Compute union across three BED files after merge overlapping intervals
bedops,bedops_08,bedops_08_01,original,sort a BED file for use with BEDOPS tools
bedops,bedops_08,bedops_08_02,beginner,How do I sort a BED file for use with BEDOPS tools?
bedops,bedops_08,bedops_08_03,student,I need to sort a BED file for use with BEDOPS tools
bedops,bedops_08,bedops_08_04,polite,Please sort a BED file for use with BEDOPS tools
bedops,bedops_08,bedops_08_05,sysadmin,Use bedops to sort a BED file for use with BEDOPS tools
bedops,bedops_08,bedops_08_06,goal_oriented,I want to sort a BED file for use with BEDOPS tools
bedops,bedops_08,bedops_08_07,expert,sort BED file use BEDOPS tools
bedops,bedops_08,bedops_08_08,detailed,I have data that I need to process: sort a BED file for use with BEDOPS tools
bedops,bedops_08,bedops_08_09,informal,"Hey, can you help me sort a BED file for use with BEDOPS tools?"
bedops,bedops_08,bedops_08_10,alternative,"With BEDOPS tools, sort a BED file for use"
bedops,bedops_09,bedops_09_01,original,intersect two sorted BED files (intervals present in both)
bedops,bedops_09,bedops_09_02,beginner,How do I intersect two sorted BED files (intervals present in both)?
bedops,bedops_09,bedops_09_03,student,I need to intersect two sorted BED files (intervals present in both)
bedops,bedops_09,bedops_09_04,polite,Please intersect two sorted BED files (intervals present in both)
bedops,bedops_09,bedops_09_05,sysadmin,Use bedops to intersect two sorted BED files (intervals present in both)
bedops,bedops_09,bedops_09_06,goal_oriented,I want to intersect two sorted BED files (intervals present in both)
bedops,bedops_09,bedops_09_07,expert,intersect two sorted BED files (intervals present both)
bedops,bedops_09,bedops_09_08,detailed,I have data that I need to process: intersect two sorted BED files (intervals present in both)
bedops,bedops_09,bedops_09_09,informal,"Hey, can you help me intersect two sorted BED files (intervals present in both)?"
bedops,bedops_09,bedops_09_10,alternative,Perform: intersect two sorted BED files (intervals present in both)
bedops,bedops_10,bedops_10_01,original,find intervals in file A that do not overlap file B with default parameters
bedops,bedops_10,bedops_10_02,beginner,How do I find intervals in file A that do not overlap file B with default parameters?
bedops,bedops_10,bedops_10_03,student,I need to find intervals in file A that do not overlap file B with default parameters
bedops,bedops_10,bedops_10_04,polite,Please find intervals in file A that do not overlap file B with default parameters
bedops,bedops_10,bedops_10_05,sysadmin,Use bedops to find intervals in file A that do not overlap file B with default parameters
bedops,bedops_10,bedops_10_06,goal_oriented,I want to find intervals in file A that do not overlap file B with default parameters
bedops,bedops_10,bedops_10_07,expert,find intervals file that do not overlap file B default parameters
bedops,bedops_10,bedops_10_08,detailed,I have data that I need to process: find intervals in file A that do not overlap file B with default parameters
bedops,bedops_10,bedops_10_09,informal,"Hey, can you help me find intervals in file A that do not overlap file B with default parameters?"
bedops,bedops_10,bedops_10_10,alternative,"With default parameters, find intervals in file A that do not overlap file B"
bedtools,bedtools_01,bedtools_01_01,original,find intervals in file A that overlap with file B
bedtools,bedtools_01,bedtools_01_02,beginner,How do I find intervals in file A that overlap with file B?
bedtools,bedtools_01,bedtools_01_03,student,I need to find intervals in file A that overlap with file B
bedtools,bedtools_01,bedtools_01_04,polite,Please find intervals in file A that overlap with file B
bedtools,bedtools_01,bedtools_01_05,sysadmin,Use bedtools to find intervals in file A that overlap with file B
bedtools,bedtools_01,bedtools_01_06,goal_oriented,I want to find intervals in file A that overlap with file B
bedtools,bedtools_01,bedtools_01_07,expert,find intervals file that overlap file B
bedtools,bedtools_01,bedtools_01_08,detailed,I have data that I need to process: find intervals in file A that overlap with file B
bedtools,bedtools_01,bedtools_01_09,informal,"Hey, can you help me find intervals in file A that overlap with file B?"
bedtools,bedtools_01,bedtools_01_10,alternative,"With file B, find intervals in file A that overlap"
bedtools,bedtools_02,bedtools_02_01,original,subtract regions in B from regions in A
bedtools,bedtools_02,bedtools_02_02,beginner,How do I subtract regions in B from regions in A?
bedtools,bedtools_02,bedtools_02_03,student,I need to subtract regions in B from regions in A
bedtools,bedtools_02,bedtools_02_04,polite,Please subtract regions in B from regions in A
bedtools,bedtools_02,bedtools_02_05,sysadmin,Use bedtools to subtract regions in B from regions in A
bedtools,bedtools_02,bedtools_02_06,goal_oriented,I want to subtract regions in B from regions in A
bedtools,bedtools_02,bedtools_02_07,expert,subtract regions B regions
bedtools,bedtools_02,bedtools_02_08,detailed,I have data that I need to process: subtract regions in B from regions in A
bedtools,bedtools_02,bedtools_02_09,informal,"Hey, can you help me subtract regions in B from regions in A?"
bedtools,bedtools_02,bedtools_02_10,alternative,Perform: subtract regions in B from regions in A
bedtools,bedtools_03,bedtools_03_01,original,merge overlapping intervals in a BED file
bedtools,bedtools_03,bedtools_03_02,beginner,How do I merge overlapping intervals in a BED file?
bedtools,bedtools_03,bedtools_03_03,student,I need to merge overlapping intervals in a BED file
bedtools,bedtools_03,bedtools_03_04,polite,Please merge overlapping intervals in a BED file
bedtools,bedtools_03,bedtools_03_05,sysadmin,Use bedtools to merge overlapping intervals in a BED file
bedtools,bedtools_03,bedtools_03_06,goal_oriented,I want to merge overlapping intervals in a BED file
bedtools,bedtools_03,bedtools_03_07,expert,merge overlapping intervals BED file
bedtools,bedtools_03,bedtools_03_08,detailed,I have data that I need to process: merge overlapping intervals in a BED file
bedtools,bedtools_03,bedtools_03_09,informal,"Hey, can you help me merge overlapping intervals in a BED file?"
bedtools,bedtools_03,bedtools_03_10,alternative,Perform: merge overlapping intervals in a BED file
bedtools,bedtools_04,bedtools_04_01,original,compute per-base coverage from a BAM file
bedtools,bedtools_04,bedtools_04_02,beginner,How do I compute per-base coverage from a BAM file?
bedtools,bedtools_04,bedtools_04_03,student,I need to compute per-base coverage from a BAM file
bedtools,bedtools_04,bedtools_04_04,polite,Please compute per-base coverage from a BAM file
bedtools,bedtools_04,bedtools_04_05,sysadmin,Use bedtools to compute per-base coverage from a BAM file
bedtools,bedtools_04,bedtools_04_06,goal_oriented,I want to compute per-base coverage from a BAM file
bedtools,bedtools_04,bedtools_04_07,expert,compute per-base coverage BAM file
bedtools,bedtools_04,bedtools_04_08,detailed,I have data that I need to process: compute per-base coverage from a BAM file
bedtools,bedtools_04,bedtools_04_09,informal,"Hey, can you help me compute per-base coverage from a BAM file?"
bedtools,bedtools_04,bedtools_04_10,alternative,Perform: compute per-base coverage from a BAM file
bedtools,bedtools_05,bedtools_05_01,original,find closest non-overlapping feature in B for each interval in A
bedtools,bedtools_05,bedtools_05_02,beginner,How do I find closest non-overlapping feature in B for each interval in A?
bedtools,bedtools_05,bedtools_05_03,student,I need to find closest non-overlapping feature in B for each interval in A
bedtools,bedtools_05,bedtools_05_04,polite,Please find closest non-overlapping feature in B for each interval in A
bedtools,bedtools_05,bedtools_05_05,sysadmin,Use bedtools to find closest non-overlapping feature in B for each interval in A
bedtools,bedtools_05,bedtools_05_06,goal_oriented,I want to find closest non-overlapping feature in B for each interval in A
bedtools,bedtools_05,bedtools_05_07,expert,find closest non-overlapping feature B each interval
bedtools,bedtools_05,bedtools_05_08,detailed,I have data that I need to process: find closest non-overlapping feature in B for each interval in A
bedtools,bedtools_05,bedtools_05_09,informal,"Hey, can you help me find closest non-overlapping feature in B for each interval in A?"
bedtools,bedtools_05,bedtools_05_10,alternative,Perform: find closest non-overlapping feature in B for each interval in A
bedtools,bedtools_06,bedtools_06_01,original,count overlaps between A intervals and B features
bedtools,bedtools_06,bedtools_06_02,beginner,How do I count overlaps between A intervals and B features?
bedtools,bedtools_06,bedtools_06_03,student,I need to count overlaps between A intervals and B features
bedtools,bedtools_06,bedtools_06_04,polite,Please count overlaps between A intervals and B features
bedtools,bedtools_06,bedtools_06_05,sysadmin,Use bedtools to count overlaps between A intervals and B features
bedtools,bedtools_06,bedtools_06_06,goal_oriented,I want to count overlaps between A intervals and B features
bedtools,bedtools_06,bedtools_06_07,expert,count overlaps between intervals B features
bedtools,bedtools_06,bedtools_06_08,detailed,I have data that I need to process: count overlaps between A intervals and B features
bedtools,bedtools_06,bedtools_06_09,informal,"Hey, can you help me count overlaps between A intervals and B features?"
bedtools,bedtools_06,bedtools_06_10,alternative,B features after count overlaps between A intervals
bedtools,bedtools_07,bedtools_07_01,original,get sequences for intervals in a BED file
bedtools,bedtools_07,bedtools_07_02,beginner,How do I get sequences for intervals in a BED file?
bedtools,bedtools_07,bedtools_07_03,student,I need to get sequences for intervals in a BED file
bedtools,bedtools_07,bedtools_07_04,polite,Please get sequences for intervals in a BED file
bedtools,bedtools_07,bedtools_07_05,sysadmin,Use bedtools to get sequences for intervals in a BED file
bedtools,bedtools_07,bedtools_07_06,goal_oriented,I want to get sequences for intervals in a BED file
bedtools,bedtools_07,bedtools_07_07,expert,get sequences intervals BED file
bedtools,bedtools_07,bedtools_07_08,detailed,I have data that I need to process: get sequences for intervals in a BED file
bedtools,bedtools_07,bedtools_07_09,informal,"Hey, can you help me get sequences for intervals in a BED file?"
bedtools,bedtools_07,bedtools_07_10,alternative,Perform: get sequences for intervals in a BED file
bedtools,bedtools_08,bedtools_08_01,original,compute coverage including zero-coverage positions
bedtools,bedtools_08,bedtools_08_02,beginner,How do I compute coverage including zero-coverage positions?
bedtools,bedtools_08,bedtools_08_03,student,I need to compute coverage including zero-coverage positions
bedtools,bedtools_08,bedtools_08_04,polite,Please compute coverage including zero-coverage positions
bedtools,bedtools_08,bedtools_08_05,sysadmin,Use bedtools to compute coverage including zero-coverage positions
bedtools,bedtools_08,bedtools_08_06,goal_oriented,I want to compute coverage including zero-coverage positions
bedtools,bedtools_08,bedtools_08_07,expert,compute coverage including zero-coverage positions
bedtools,bedtools_08,bedtools_08_08,detailed,I have data that I need to process: compute coverage including zero-coverage positions
bedtools,bedtools_08,bedtools_08_09,informal,"Hey, can you help me compute coverage including zero-coverage positions?"
bedtools,bedtools_08,bedtools_08_10,alternative,Perform: compute coverage including zero-coverage positions
bedtools,bedtools_09,bedtools_09_01,original,intersect two BED files and report original B intervals that overlap A
bedtools,bedtools_09,bedtools_09_02,beginner,How do I intersect two BED files and report original B intervals that overlap A?
bedtools,bedtools_09,bedtools_09_03,student,I need to intersect two BED files and report original B intervals that overlap A
bedtools,bedtools_09,bedtools_09_04,polite,Please intersect two BED files and report original B intervals that overlap A
bedtools,bedtools_09,bedtools_09_05,sysadmin,Use bedtools to intersect two BED files and report original B intervals that overlap A
bedtools,bedtools_09,bedtools_09_06,goal_oriented,I want to intersect two BED files and report original B intervals that overlap A
bedtools,bedtools_09,bedtools_09_07,expert,intersect two BED files report original B intervals that overlap
bedtools,bedtools_09,bedtools_09_08,detailed,I have data that I need to process: intersect two BED files and report original B intervals that overlap A
bedtools,bedtools_09,bedtools_09_09,informal,"Hey, can you help me intersect two BED files and report original B intervals that overlap A?"
bedtools,bedtools_09,bedtools_09_10,alternative,Report original B intervals that overlap A after intersect two BED files
bedtools,bedtools_10,bedtools_10_01,original,make windows of fixed size across a genome
bedtools,bedtools_10,bedtools_10_02,beginner,How do I make windows of fixed size across a genome?
bedtools,bedtools_10,bedtools_10_03,student,I need to make windows of fixed size across a genome
bedtools,bedtools_10,bedtools_10_04,polite,Please make windows of fixed size across a genome
bedtools,bedtools_10,bedtools_10_05,sysadmin,Use bedtools to make windows of fixed size across a genome
bedtools,bedtools_10,bedtools_10_06,goal_oriented,I want to make windows of fixed size across a genome
bedtools,bedtools_10,bedtools_10_07,expert,make windows of fixed size across genome
bedtools,bedtools_10,bedtools_10_08,detailed,I have data that I need to process: make windows of fixed size across a genome
bedtools,bedtools_10,bedtools_10_09,informal,"Hey, can you help me make windows of fixed size across a genome?"
bedtools,bedtools_10,bedtools_10_10,alternative,Perform: make windows of fixed size across a genome
bismark,bismark_01,bismark_01_01,original,prepare bisulfite genome index for alignment
bismark,bismark_01,bismark_01_02,beginner,How do I prepare bisulfite genome index for alignment?
bismark,bismark_01,bismark_01_03,student,I need to prepare bisulfite genome index for alignment
bismark,bismark_01,bismark_01_04,polite,Please prepare bisulfite genome index for alignment
bismark,bismark_01,bismark_01_05,sysadmin,Use bismark to prepare bisulfite genome index for alignment
bismark,bismark_01,bismark_01_06,goal_oriented,I want to prepare bisulfite genome index for alignment
bismark,bismark_01,bismark_01_07,expert,prepare bisulfite genome index alignment
bismark,bismark_01,bismark_01_08,detailed,I have data that I need to process: prepare bisulfite genome index for alignment
bismark,bismark_01,bismark_01_09,informal,"Hey, can you help me prepare bisulfite genome index for alignment?"
bismark,bismark_01,bismark_01_10,alternative,Perform: prepare bisulfite genome index for alignment
bismark,bismark_02,bismark_02_01,original,align paired-end WGBS reads to bisulfite genome
bismark,bismark_02,bismark_02_02,beginner,How do I align paired-end WGBS reads to bisulfite genome?
bismark,bismark_02,bismark_02_03,student,I need to align paired-end WGBS reads to bisulfite genome
bismark,bismark_02,bismark_02_04,polite,Please align paired-end WGBS reads to bisulfite genome
bismark,bismark_02,bismark_02_05,sysadmin,Use bismark to align paired-end WGBS reads to bisulfite genome
bismark,bismark_02,bismark_02_06,goal_oriented,I want to align paired-end WGBS reads to bisulfite genome
bismark,bismark_02,bismark_02_07,expert,align paired-end WGBS reads bisulfite genome
bismark,bismark_02,bismark_02_08,detailed,"I have data that I need to process: align paired-end WGBS reads to bisulfite genome, utilizing multiple CPU threads for speed, saving the result to a specified output file"
bismark,bismark_02,bismark_02_09,informal,"Hey, can you help me align paired-end WGBS reads to bisulfite genome?"
bismark,bismark_02,bismark_02_10,alternative,Output bisulfite genome by performing: align paired-end WGBS reads
bismark,bismark_03,bismark_03_01,original,deduplicate bismark-aligned paired-end BAM file
bismark,bismark_03,bismark_03_02,beginner,How do I deduplicate bismark-aligned paired-end BAM file?
bismark,bismark_03,bismark_03_03,student,I need to deduplicate bismark-aligned paired-end BAM file
bismark,bismark_03,bismark_03_04,polite,Please deduplicate bismark-aligned paired-end BAM file
bismark,bismark_03,bismark_03_05,sysadmin,Use bismark to deduplicate bismark-aligned paired-end BAM file
bismark,bismark_03,bismark_03_06,goal_oriented,I want to deduplicate bismark-aligned paired-end BAM file
bismark,bismark_03,bismark_03_07,expert,deduplicate bismark-aligned paired-end BAM file
bismark,bismark_03,bismark_03_08,detailed,I have data that I need to process: deduplicate bismark-aligned paired-end BAM file
bismark,bismark_03,bismark_03_09,informal,"Hey, can you help me deduplicate bismark-aligned paired-end BAM file?"
bismark,bismark_03,bismark_03_10,alternative,Perform: deduplicate bismark-aligned paired-end BAM file
bismark,bismark_04,bismark_04_01,original,extract methylation information from deduplicated BAM
bismark,bismark_04,bismark_04_02,beginner,How do I extract methylation information from deduplicated BAM?
bismark,bismark_04,bismark_04_03,student,I need to extract methylation information from deduplicated BAM
bismark,bismark_04,bismark_04_04,polite,Please extract methylation information from deduplicated BAM
bismark,bismark_04,bismark_04_05,sysadmin,Use bismark to extract methylation information from deduplicated BAM
bismark,bismark_04,bismark_04_06,goal_oriented,I want to extract methylation information from deduplicated BAM
bismark,bismark_04,bismark_04_07,expert,extract methylation information deduplicated BAM
bismark,bismark_04,bismark_04_08,detailed,"I have data that I need to process: extract methylation information from deduplicated BAM, saving the result to a specified output file"
bismark,bismark_04,bismark_04_09,informal,"Hey, can you help me extract methylation information from deduplicated BAM?"
bismark,bismark_04,bismark_04_10,alternative,Perform: extract methylation information from deduplicated BAM
bismark,bismark_05,bismark_05_01,original,align RRBS data with MspI site handling
bismark,bismark_05,bismark_05_02,beginner,How do I align RRBS data with MspI site handling?
bismark,bismark_05,bismark_05_03,student,I need to align RRBS data with MspI site handling
bismark,bismark_05,bismark_05_04,polite,Please align RRBS data with MspI site handling
bismark,bismark_05,bismark_05_05,sysadmin,Use bismark to align RRBS data with MspI site handling
bismark,bismark_05,bismark_05_06,goal_oriented,I want to align RRBS data with MspI site handling
bismark,bismark_05,bismark_05_07,expert,align RRBS data MspI site handling
bismark,bismark_05,bismark_05_08,detailed,"I have data that I need to process: align RRBS data with MspI site handling, utilizing multiple CPU threads for speed, saving the result to a specified output file"
bismark,bismark_05,bismark_05_09,informal,"Hey, can you help me align RRBS data with MspI site handling?"
bismark,bismark_05,bismark_05_10,alternative,"With MspI site handling, align RRBS data"
bismark,bismark_06,bismark_06_01,original,align single-end WGBS reads with HISAT2 aligner
bismark,bismark_06,bismark_06_02,beginner,How do I align single-end WGBS reads with HISAT2 aligner?
bismark,bismark_06,bismark_06_03,student,I need to align single-end WGBS reads with HISAT2 aligner
bismark,bismark_06,bismark_06_04,polite,Please align single-end WGBS reads with HISAT2 aligner
bismark,bismark_06,bismark_06_05,sysadmin,Use bismark to align single-end WGBS reads with HISAT2 aligner
bismark,bismark_06,bismark_06_06,goal_oriented,I want to align single-end WGBS reads with HISAT2 aligner
bismark,bismark_06,bismark_06_07,expert,align single-end WGBS reads HISAT2 aligner
bismark,bismark_06,bismark_06_08,detailed,"I have data that I need to process: align single-end WGBS reads with HISAT2 aligner, utilizing multiple CPU threads for speed, saving the result to a specified output file"
bismark,bismark_06,bismark_06_09,informal,"Hey, can you help me align single-end WGBS reads with HISAT2 aligner?"
bismark,bismark_06,bismark_06_10,alternative,"With HISAT2 aligner, align single-end WGBS reads"
bismark,bismark_07,bismark_07_01,original,align PBAT or scBS-seq (non-directional) library
bismark,bismark_07,bismark_07_02,beginner,How do I align PBAT or scBS-seq (non-directional) library?
bismark,bismark_07,bismark_07_03,student,I need to align PBAT or scBS-seq (non-directional) library
bismark,bismark_07,bismark_07_04,polite,Please align PBAT or scBS-seq (non-directional) library
bismark,bismark_07,bismark_07_05,sysadmin,Use bismark to align PBAT or scBS-seq (non-directional) library
bismark,bismark_07,bismark_07_06,goal_oriented,I want to align PBAT or scBS-seq (non-directional) library
bismark,bismark_07,bismark_07_07,expert,align PBAT or scBS-seq (non-directional) library
bismark,bismark_07,bismark_07_08,detailed,"I have data that I need to process: align PBAT or scBS-seq (non-directional) library, utilizing multiple CPU threads for speed, saving the result to a specified output file"
bismark,bismark_07,bismark_07_09,informal,"Hey, can you help me align PBAT or scBS-seq (non-directional) library?"
bismark,bismark_07,bismark_07_10,alternative,Perform: align PBAT or scBS-seq (non-directional) library
bismark,bismark_08,bismark_08_01,original,extract CpG methylation and generate bedGraph coverage file
bismark,bismark_08,bismark_08_02,beginner,How do I extract CpG methylation and generate bedGraph coverage file?
bismark,bismark_08,bismark_08_03,student,I need to extract CpG methylation and generate bedGraph coverage file
bismark,bismark_08,bismark_08_04,polite,Please extract CpG methylation and generate bedGraph coverage file
bismark,bismark_08,bismark_08_05,sysadmin,Use bismark to extract CpG methylation and generate bedGraph coverage file
bismark,bismark_08,bismark_08_06,goal_oriented,I want to extract CpG methylation and generate bedGraph coverage file
bismark,bismark_08,bismark_08_07,expert,extract CpG methylation generate bedGraph coverage file
bismark,bismark_08,bismark_08_08,detailed,"I have data that I need to process: extract CpG methylation and generate bedGraph coverage file, saving the result to a specified output file"
bismark,bismark_08,bismark_08_09,informal,"Hey, can you help me extract CpG methylation and generate bedGraph coverage file?"
bismark,bismark_08,bismark_08_10,alternative,Generate bedGraph coverage file after extract CpG methylation
bismark,bismark_09,bismark_09_01,original,prepare bisulfite index for HISAT2-based alignment
bismark,bismark_09,bismark_09_02,beginner,How do I prepare bisulfite index for HISAT2-based alignment?
bismark,bismark_09,bismark_09_03,student,I need to prepare bisulfite index for HISAT2-based alignment
bismark,bismark_09,bismark_09_04,polite,Please prepare bisulfite index for HISAT2-based alignment
bismark,bismark_09,bismark_09_05,sysadmin,Use bismark to prepare bisulfite index for HISAT2-based alignment
bismark,bismark_09,bismark_09_06,goal_oriented,I want to prepare bisulfite index for HISAT2-based alignment
bismark,bismark_09,bismark_09_07,expert,prepare bisulfite index HISAT2-based alignment
bismark,bismark_09,bismark_09_08,detailed,I have data that I need to process: prepare bisulfite index for HISAT2-based alignment
bismark,bismark_09,bismark_09_09,informal,"Hey, can you help me prepare bisulfite index for HISAT2-based alignment?"
bismark,bismark_09,bismark_09_10,alternative,Perform: prepare bisulfite index for HISAT2-based alignment
bismark,bismark_10,bismark_10_01,original,generate M-bias plot to identify read-end bias in methylation calls
bismark,bismark_10,bismark_10_02,beginner,How do I generate M-bias plot to identify read-end bias in methylation calls?
bismark,bismark_10,bismark_10_03,student,I need to generate M-bias plot to identify read-end bias in methylation calls
bismark,bismark_10,bismark_10_04,polite,Please generate M-bias plot to identify read-end bias in methylation calls
bismark,bismark_10,bismark_10_05,sysadmin,Use bismark to generate M-bias plot to identify read-end bias in methylation calls
bismark,bismark_10,bismark_10_06,goal_oriented,I want to generate M-bias plot to identify read-end bias in methylation calls
bismark,bismark_10,bismark_10_07,expert,generate M-bias plot identify read-end bias methylation calls
bismark,bismark_10,bismark_10_08,detailed,"I have data that I need to process: generate M-bias plot to identify read-end bias in methylation calls, saving the result to a specified output file"
bismark,bismark_10,bismark_10_09,informal,"Hey, can you help me generate M-bias plot to identify read-end bias in methylation calls?"
bismark,bismark_10,bismark_10_10,alternative,Output identify read-end bias in methylation calls by performing: generate M-bias plot
blast,blast_01,blast_01_01,original,build a nucleotide BLAST database from a FASTA file
blast,blast_01,blast_01_02,beginner,How do I build a nucleotide BLAST database from a FASTA file?
blast,blast_01,blast_01_03,student,I need to build a nucleotide BLAST database from a FASTA file
blast,blast_01,blast_01_04,polite,Please build a nucleotide BLAST database from a FASTA file
blast,blast_01,blast_01_05,sysadmin,Use blast to build a nucleotide BLAST database from a FASTA file
blast,blast_01,blast_01_06,goal_oriented,I want to build a nucleotide BLAST database from a FASTA file
blast,blast_01,blast_01_07,expert,build nucleotide BLAST database FASTA file
blast,blast_01,blast_01_08,detailed,I have data that I need to process: build a nucleotide BLAST database from a FASTA file
blast,blast_01,blast_01_09,informal,"Hey, can you help me build a nucleotide BLAST database from a FASTA file?"
blast,blast_01,blast_01_10,alternative,Perform: build a nucleotide BLAST database from a FASTA file
blast,blast_02,blast_02_01,original,run blastn to find similar nucleotide sequences
blast,blast_02,blast_02_02,beginner,How do I run blastn to find similar nucleotide sequences?
blast,blast_02,blast_02_03,student,I need to run blastn to find similar nucleotide sequences
blast,blast_02,blast_02_04,polite,Please run blastn to find similar nucleotide sequences
blast,blast_02,blast_02_05,sysadmin,Use blast to run blastn to find similar nucleotide sequences
blast,blast_02,blast_02_06,goal_oriented,I want to run blastn to find similar nucleotide sequences
blast,blast_02,blast_02_07,expert,run blastn find similar nucleotide sequences
blast,blast_02,blast_02_08,detailed,I have data that I need to process: run blastn to find similar nucleotide sequences
blast,blast_02,blast_02_09,informal,"Hey, can you help me run blastn to find similar nucleotide sequences?"
blast,blast_02,blast_02_10,alternative,Output find similar nucleotide sequences by performing: run blastn
blast,blast_03,blast_03_01,original,search protein sequences against NR database
blast,blast_03,blast_03_02,beginner,How do I search protein sequences against NR database?
blast,blast_03,blast_03_03,student,I need to search protein sequences against NR database
blast,blast_03,blast_03_04,polite,Please search protein sequences against NR database
blast,blast_03,blast_03_05,sysadmin,Use blast to search protein sequences against NR database
blast,blast_03,blast_03_06,goal_oriented,I want to search protein sequences against NR database
blast,blast_03,blast_03_07,expert,search protein sequences against NR database
blast,blast_03,blast_03_08,detailed,I have data that I need to process: search protein sequences against NR database
blast,blast_03,blast_03_09,informal,"Hey, can you help me search protein sequences against NR database?"
blast,blast_03,blast_03_10,alternative,Perform: search protein sequences against NR database
blast,blast_04,blast_04_01,original,run blastx to annotate nucleotide sequences against protein database
blast,blast_04,blast_04_02,beginner,How do I run blastx to annotate nucleotide sequences against protein database?
blast,blast_04,blast_04_03,student,I need to run blastx to annotate nucleotide sequences against protein database
blast,blast_04,blast_04_04,polite,Please run blastx to annotate nucleotide sequences against protein database
blast,blast_04,blast_04_05,sysadmin,Use blast to run blastx to annotate nucleotide sequences against protein database
blast,blast_04,blast_04_06,goal_oriented,I want to run blastx to annotate nucleotide sequences against protein database
blast,blast_04,blast_04_07,expert,run blastx annotate nucleotide sequences against protein database
blast,blast_04,blast_04_08,detailed,I have data that I need to process: run blastx to annotate nucleotide sequences against protein database
blast,blast_04,blast_04_09,informal,"Hey, can you help me run blastx to annotate nucleotide sequences against protein database?"
blast,blast_04,blast_04_10,alternative,Output annotate nucleotide sequences against protein database by performing: run blastx
blast,blast_05,blast_05_01,original,perform remote BLAST search against NCBI nr database
blast,blast_05,blast_05_02,beginner,How do I perform remote BLAST search against NCBI nr database?
blast,blast_05,blast_05_03,student,I need to perform remote BLAST search against NCBI nr database
blast,blast_05,blast_05_04,polite,Please perform remote BLAST search against NCBI nr database
blast,blast_05,blast_05_05,sysadmin,Use blast to perform remote BLAST search against NCBI nr database
blast,blast_05,blast_05_06,goal_oriented,I want to perform remote BLAST search against NCBI nr database
blast,blast_05,blast_05_07,expert,perform remote BLAST search against NCBI nr database
blast,blast_05,blast_05_08,detailed,I have data that I need to process: perform remote BLAST search against NCBI nr database
blast,blast_05,blast_05_09,informal,"Hey, can you help me perform remote BLAST search against NCBI nr database?"
blast,blast_05,blast_05_10,alternative,Perform: perform remote BLAST search against NCBI nr database
blast,blast_06,blast_06_01,original,build a nucleotide BLAST database from a FASTA file with verbose output
blast,blast_06,blast_06_02,beginner,How do I build a nucleotide BLAST database from a FASTA file with verbose output?
blast,blast_06,blast_06_03,student,I need to build a nucleotide BLAST database from a FASTA file with verbose output
blast,blast_06,blast_06_04,polite,Please build a nucleotide BLAST database from a FASTA file with verbose output
blast,blast_06,blast_06_05,sysadmin,Use blast to build a nucleotide BLAST database from a FASTA file with verbose output
blast,blast_06,blast_06_06,goal_oriented,I want to build a nucleotide BLAST database from a FASTA file with verbose output
blast,blast_06,blast_06_07,expert,build nucleotide BLAST database FASTA file verbose output
blast,blast_06,blast_06_08,detailed,I have data that I need to process: build a nucleotide BLAST database from a FASTA file with verbose output
blast,blast_06,blast_06_09,informal,"Hey, can you help me build a nucleotide BLAST database from a FASTA file with verbose output?"
blast,blast_06,blast_06_10,alternative,"With verbose output, build a nucleotide BLAST database from a FASTA file"
blast,blast_07,blast_07_01,original,run blastn to find similar nucleotide sequences using multiple threads
blast,blast_07,blast_07_02,beginner,How do I run blastn to find similar nucleotide sequences using multiple threads?
blast,blast_07,blast_07_03,student,I need to run blastn to find similar nucleotide sequences using multiple threads
blast,blast_07,blast_07_04,polite,Please run blastn to find similar nucleotide sequences using multiple threads
blast,blast_07,blast_07_05,sysadmin,Use blast to run blastn to find similar nucleotide sequences using multiple threads
blast,blast_07,blast_07_06,goal_oriented,I want to run blastn to find similar nucleotide sequences using multiple threads
blast,blast_07,blast_07_07,expert,run blastn find similar nucleotide sequences multiple threads
blast,blast_07,blast_07_08,detailed,"I have data that I need to process: run blastn to find similar nucleotide sequences using multiple threads, utilizing multiple CPU threads for speed"
blast,blast_07,blast_07_09,informal,"Hey, can you help me run blastn to find similar nucleotide sequences using multiple threads?"
blast,blast_07,blast_07_10,alternative,Output find similar nucleotide sequences using multiple threads by performing: run blastn
blast,blast_08,blast_08_01,original,search protein sequences against NR database and write output to a file
blast,blast_08,blast_08_02,beginner,How do I search protein sequences against NR database and write output to a file?
blast,blast_08,blast_08_03,student,I need to search protein sequences against NR database and write output to a file
blast,blast_08,blast_08_04,polite,Please search protein sequences against NR database and write output to a file
blast,blast_08,blast_08_05,sysadmin,Use blast to search protein sequences against NR database and write output to a file
blast,blast_08,blast_08_06,goal_oriented,I want to search protein sequences against NR database and write output to a file
blast,blast_08,blast_08_07,expert,search protein sequences against NR database write output file
blast,blast_08,blast_08_08,detailed,"I have data that I need to process: search protein sequences against NR database and write output to a file, saving the result to a specified output file"
blast,blast_08,blast_08_09,informal,"Hey, can you help me search protein sequences against NR database and write output to a file?"
blast,blast_08,blast_08_10,alternative,Write output to a file after search protein sequences against NR database
blast,blast_09,blast_09_01,original,run blastx to annotate nucleotide sequences against protein database in quiet mode
blast,blast_09,blast_09_02,beginner,How do I run blastx to annotate nucleotide sequences against protein database in quiet mode?
blast,blast_09,blast_09_03,student,I need to run blastx to annotate nucleotide sequences against protein database in quiet mode
blast,blast_09,blast_09_04,polite,Please run blastx to annotate nucleotide sequences against protein database in quiet mode
blast,blast_09,blast_09_05,sysadmin,Use blast to run blastx to annotate nucleotide sequences against protein database in quiet mode
blast,blast_09,blast_09_06,goal_oriented,I want to run blastx to annotate nucleotide sequences against protein database in quiet mode
blast,blast_09,blast_09_07,expert,run blastx annotate nucleotide sequences against protein database quiet mode
blast,blast_09,blast_09_08,detailed,I have data that I need to process: run blastx to annotate nucleotide sequences against protein database in quiet mode
blast,blast_09,blast_09_09,informal,"Hey, can you help me run blastx to annotate nucleotide sequences against protein database in quiet mode?"
blast,blast_09,blast_09_10,alternative,Output annotate nucleotide sequences against protein database in quiet mode by performing: run blastx
blast,blast_10,blast_10_01,original,perform remote BLAST search against NCBI nr database with default parameters
blast,blast_10,blast_10_02,beginner,How do I perform remote BLAST search against NCBI nr database with default parameters?
blast,blast_10,blast_10_03,student,I need to perform remote BLAST search against NCBI nr database with default parameters
blast,blast_10,blast_10_04,polite,Please perform remote BLAST search against NCBI nr database with default parameters
blast,blast_10,blast_10_05,sysadmin,Use blast to perform remote BLAST search against NCBI nr database with default parameters
blast,blast_10,blast_10_06,goal_oriented,I want to perform remote BLAST search against NCBI nr database with default parameters
blast,blast_10,blast_10_07,expert,perform remote BLAST search against NCBI nr database default parameters
blast,blast_10,blast_10_08,detailed,I have data that I need to process: perform remote BLAST search against NCBI nr database with default parameters
blast,blast_10,blast_10_09,informal,"Hey, can you help me perform remote BLAST search against NCBI nr database with default parameters?"
blast,blast_10,blast_10_10,alternative,"With default parameters, perform remote BLAST search against NCBI nr database"
bowtie2,bowtie2_01,bowtie2_01_01,original,build a bowtie2 index from a reference FASTA file
bowtie2,bowtie2_01,bowtie2_01_02,beginner,How do I build a bowtie2 index from a reference FASTA file?
bowtie2,bowtie2_01,bowtie2_01_03,student,I need to build a bowtie2 index from a reference FASTA file
bowtie2,bowtie2_01,bowtie2_01_04,polite,Please build a bowtie2 index from a reference FASTA file
bowtie2,bowtie2_01,bowtie2_01_05,sysadmin,Use bowtie2 to build a bowtie2 index from a reference FASTA file
bowtie2,bowtie2_01,bowtie2_01_06,goal_oriented,I want to build a bowtie2 index from a reference FASTA file
bowtie2,bowtie2_01,bowtie2_01_07,expert,build bowtie2 index reference FASTA file
bowtie2,bowtie2_01,bowtie2_01_08,detailed,I have data that I need to process: build a bowtie2 index from a reference FASTA file
bowtie2,bowtie2_01,bowtie2_01_09,informal,"Hey, can you help me build a bowtie2 index from a reference FASTA file?"
bowtie2,bowtie2_01,bowtie2_01_10,alternative,Perform: build a bowtie2 index from a reference FASTA file
bowtie2,bowtie2_02,bowtie2_02_01,original,build a bowtie2 index using multiple threads for a large genome
bowtie2,bowtie2_02,bowtie2_02_02,beginner,How do I build a bowtie2 index using multiple threads for a large genome?
bowtie2,bowtie2_02,bowtie2_02_03,student,I need to build a bowtie2 index using multiple threads for a large genome
bowtie2,bowtie2_02,bowtie2_02_04,polite,Please build a bowtie2 index using multiple threads for a large genome
bowtie2,bowtie2_02,bowtie2_02_05,sysadmin,Use bowtie2 to build a bowtie2 index using multiple threads for a large genome
bowtie2,bowtie2_02,bowtie2_02_06,goal_oriented,I want to build a bowtie2 index using multiple threads for a large genome
bowtie2,bowtie2_02,bowtie2_02_07,expert,build bowtie2 index multiple threads large genome
bowtie2,bowtie2_02,bowtie2_02_08,detailed,"I have data that I need to process: build a bowtie2 index using multiple threads for a large genome, utilizing multiple CPU threads for speed"
bowtie2,bowtie2_02,bowtie2_02_09,informal,"Hey, can you help me build a bowtie2 index using multiple threads for a large genome?"
bowtie2,bowtie2_02,bowtie2_02_10,alternative,Perform: build a bowtie2 index using multiple threads for a large genome
bowtie2,bowtie2_03,bowtie2_03_01,original,align paired-end reads to a reference genome using 8 threads
bowtie2,bowtie2_03,bowtie2_03_02,beginner,How do I align paired-end reads to a reference genome using 8 threads?
bowtie2,bowtie2_03,bowtie2_03_03,student,I need to align paired-end reads to a reference genome using 8 threads
bowtie2,bowtie2_03,bowtie2_03_04,polite,Please align paired-end reads to a reference genome using 8 threads
bowtie2,bowtie2_03,bowtie2_03_05,sysadmin,Use bowtie2 to align paired-end reads to a reference genome using 8 threads
bowtie2,bowtie2_03,bowtie2_03_06,goal_oriented,I want to align paired-end reads to a reference genome using 8 threads
bowtie2,bowtie2_03,bowtie2_03_07,expert,align paired-end reads reference genome 8 threads
bowtie2,bowtie2_03,bowtie2_03_08,detailed,"I have data that I need to process: align paired-end reads to a reference genome using 8 threads, utilizing multiple CPU threads for speed, saving the result to a specified output file"
bowtie2,bowtie2_03,bowtie2_03_09,informal,"Hey, can you help me align paired-end reads to a reference genome using 8 threads?"
bowtie2,bowtie2_03,bowtie2_03_10,alternative,Output a reference genome using 8 threads by performing: align paired-end reads
bowtie2,bowtie2_04,bowtie2_04_01,original,align single-end reads with sensitive settings
bowtie2,bowtie2_04,bowtie2_04_02,beginner,How do I align single-end reads with sensitive settings?
bowtie2,bowtie2_04,bowtie2_04_03,student,I need to align single-end reads with sensitive settings
bowtie2,bowtie2_04,bowtie2_04_04,polite,Please align single-end reads with sensitive settings
bowtie2,bowtie2_04,bowtie2_04_05,sysadmin,Use bowtie2 to align single-end reads with sensitive settings
bowtie2,bowtie2_04,bowtie2_04_06,goal_oriented,I want to align single-end reads with sensitive settings
bowtie2,bowtie2_04,bowtie2_04_07,expert,align single-end reads sensitive settings
bowtie2,bowtie2_04,bowtie2_04_08,detailed,"I have data that I need to process: align single-end reads with sensitive settings, utilizing multiple CPU threads for speed, saving the result to a specified output file"
bowtie2,bowtie2_04,bowtie2_04_09,informal,"Hey, can you help me align single-end reads with sensitive settings?"
bowtie2,bowtie2_04,bowtie2_04_10,alternative,"With sensitive settings, align single-end reads"
bowtie2,bowtie2_05,bowtie2_05_01,original,align paired-end reads and save the alignment statistics
bowtie2,bowtie2_05,bowtie2_05_02,beginner,How do I align paired-end reads and save the alignment statistics?
bowtie2,bowtie2_05,bowtie2_05_03,student,I need to align paired-end reads and save the alignment statistics
bowtie2,bowtie2_05,bowtie2_05_04,polite,Please align paired-end reads and save the alignment statistics
bowtie2,bowtie2_05,bowtie2_05_05,sysadmin,Use bowtie2 to align paired-end reads and save the alignment statistics
bowtie2,bowtie2_05,bowtie2_05_06,goal_oriented,I want to align paired-end reads and save the alignment statistics
bowtie2,bowtie2_05,bowtie2_05_07,expert,align paired-end reads save alignment statistics
bowtie2,bowtie2_05,bowtie2_05_08,detailed,"I have data that I need to process: align paired-end reads and save the alignment statistics, utilizing multiple CPU threads for speed"
bowtie2,bowtie2_05,bowtie2_05_09,informal,"Hey, can you help me align paired-end reads and save the alignment statistics?"
bowtie2,bowtie2_05,bowtie2_05_10,alternative,Save the alignment statistics after align paired-end reads
bowtie2,bowtie2_06,bowtie2_06_01,original,align paired-end reads with read group tags for GATK downstream analysis
bowtie2,bowtie2_06,bowtie2_06_02,beginner,How do I align paired-end reads with read group tags for GATK downstream analysis?
bowtie2,bowtie2_06,bowtie2_06_03,student,I need to align paired-end reads with read group tags for GATK downstream analysis
bowtie2,bowtie2_06,bowtie2_06_04,polite,Please align paired-end reads with read group tags for GATK downstream analysis
bowtie2,bowtie2_06,bowtie2_06_05,sysadmin,Use bowtie2 to align paired-end reads with read group tags for GATK downstream analysis
bowtie2,bowtie2_06,bowtie2_06_06,goal_oriented,I want to align paired-end reads with read group tags for GATK downstream analysis
bowtie2,bowtie2_06,bowtie2_06_07,expert,align paired-end reads read group tags GATK downstream analysis
bowtie2,bowtie2_06,bowtie2_06_08,detailed,"I have data that I need to process: align paired-end reads with read group tags for GATK downstream analysis, utilizing multiple CPU threads for speed, saving the result to a specified output file"
bowtie2,bowtie2_06,bowtie2_06_09,informal,"Hey, can you help me align paired-end reads with read group tags for GATK downstream analysis?"
bowtie2,bowtie2_06,bowtie2_06_10,alternative,"With read group tags for GATK downstream analysis, align paired-end reads"
bowtie2,bowtie2_07,bowtie2_07_01,original,align in local mode to allow soft-clipping of read ends
bowtie2,bowtie2_07,bowtie2_07_02,beginner,How do I align in local mode to allow soft-clipping of read ends?
bowtie2,bowtie2_07,bowtie2_07_03,student,I need to align in local mode to allow soft-clipping of read ends
bowtie2,bowtie2_07,bowtie2_07_04,polite,Please align in local mode to allow soft-clipping of read ends
bowtie2,bowtie2_07,bowtie2_07_05,sysadmin,Use bowtie2 to align in local mode to allow soft-clipping of read ends
bowtie2,bowtie2_07,bowtie2_07_06,goal_oriented,I want to align in local mode to allow soft-clipping of read ends
bowtie2,bowtie2_07,bowtie2_07_07,expert,align local mode allow soft-clipping of read ends
bowtie2,bowtie2_07,bowtie2_07_08,detailed,"I have data that I need to process: align in local mode to allow soft-clipping of read ends, utilizing multiple CPU threads for speed, saving the result to a specified output file"
bowtie2,bowtie2_07,bowtie2_07_09,informal,"Hey, can you help me align in local mode to allow soft-clipping of read ends?"
bowtie2,bowtie2_07,bowtie2_07_10,alternative,Output allow soft-clipping of read ends by performing: align in local mode
bowtie2,bowtie2_08,bowtie2_08_01,original,align paired-end RNA-seq reads discarding unaligned reads
bowtie2,bowtie2_08,bowtie2_08_02,beginner,How do I align paired-end RNA-seq reads discarding unaligned reads?
bowtie2,bowtie2_08,bowtie2_08_03,student,I need to align paired-end RNA-seq reads discarding unaligned reads
bowtie2,bowtie2_08,bowtie2_08_04,polite,Please align paired-end RNA-seq reads discarding unaligned reads
bowtie2,bowtie2_08,bowtie2_08_05,sysadmin,Use bowtie2 to align paired-end RNA-seq reads discarding unaligned reads
bowtie2,bowtie2_08,bowtie2_08_06,goal_oriented,I want to align paired-end RNA-seq reads discarding unaligned reads
bowtie2,bowtie2_08,bowtie2_08_07,expert,align paired-end RNA-seq reads discarding unaligned reads
bowtie2,bowtie2_08,bowtie2_08_08,detailed,"I have data that I need to process: align paired-end RNA-seq reads discarding unaligned reads, utilizing multiple CPU threads for speed, saving the result to a specified output file"
bowtie2,bowtie2_08,bowtie2_08_09,informal,"Hey, can you help me align paired-end RNA-seq reads discarding unaligned reads?"
bowtie2,bowtie2_08,bowtie2_08_10,alternative,Perform: align paired-end RNA-seq reads discarding unaligned reads
bowtie2,bowtie2_09,bowtie2_09_01,original,align single-end reads in fast mode for a quick quality check
bowtie2,bowtie2_09,bowtie2_09_02,beginner,How do I align single-end reads in fast mode for a quick quality check?
bowtie2,bowtie2_09,bowtie2_09_03,student,I need to align single-end reads in fast mode for a quick quality check
bowtie2,bowtie2_09,bowtie2_09_04,polite,Please align single-end reads in fast mode for a quick quality check
bowtie2,bowtie2_09,bowtie2_09_05,sysadmin,Use bowtie2 to align single-end reads in fast mode for a quick quality check
bowtie2,bowtie2_09,bowtie2_09_06,goal_oriented,I want to align single-end reads in fast mode for a quick quality check
bowtie2,bowtie2_09,bowtie2_09_07,expert,align single-end reads fast mode quick quality check
bowtie2,bowtie2_09,bowtie2_09_08,detailed,"I have data that I need to process: align single-end reads in fast mode for a quick quality check, utilizing multiple CPU threads for speed"
bowtie2,bowtie2_09,bowtie2_09_09,informal,"Hey, can you help me align single-end reads in fast mode for a quick quality check?"
bowtie2,bowtie2_09,bowtie2_09_10,alternative,Perform: align single-end reads in fast mode for a quick quality check
bowtie2,bowtie2_10,bowtie2_10_01,original,align paired-end reads writing unmapped reads to separate files
bowtie2,bowtie2_10,bowtie2_10_02,beginner,How do I align paired-end reads writing unmapped reads to separate files?
bowtie2,bowtie2_10,bowtie2_10_03,student,I need to align paired-end reads writing unmapped reads to separate files
bowtie2,bowtie2_10,bowtie2_10_04,polite,Please align paired-end reads writing unmapped reads to separate files
bowtie2,bowtie2_10,bowtie2_10_05,sysadmin,Use bowtie2 to align paired-end reads writing unmapped reads to separate files
bowtie2,bowtie2_10,bowtie2_10_06,goal_oriented,I want to align paired-end reads writing unmapped reads to separate files
bowtie2,bowtie2_10,bowtie2_10_07,expert,align paired-end reads writing unmapped reads separate files
bowtie2,bowtie2_10,bowtie2_10_08,detailed,"I have data that I need to process: align paired-end reads writing unmapped reads to separate files, utilizing multiple CPU threads for speed, saving the result to a specified output file"
bowtie2,bowtie2_10,bowtie2_10_09,informal,"Hey, can you help me align paired-end reads writing unmapped reads to separate files?"
bowtie2,bowtie2_10,bowtie2_10_10,alternative,Output separate files by performing: align paired-end reads writing unmapped reads
bracken,bracken_01,bracken_01_01,original,run Bracken on a Kraken2 report for species-level abundance estimation
bracken,bracken_01,bracken_01_02,beginner,How do I run Bracken on a Kraken2 report for species-level abundance estimation?
bracken,bracken_01,bracken_01_03,student,I need to run Bracken on a Kraken2 report for species-level abundance estimation
bracken,bracken_01,bracken_01_04,polite,Please run Bracken on a Kraken2 report for species-level abundance estimation
bracken,bracken_01,bracken_01_05,sysadmin,Use bracken to run Bracken on a Kraken2 report for species-level abundance estimation
bracken,bracken_01,bracken_01_06,goal_oriented,I want to run Bracken on a Kraken2 report for species-level abundance estimation
bracken,bracken_01,bracken_01_07,expert,run Bracken on Kraken2 report species-level abundance estimation
bracken,bracken_01,bracken_01_08,detailed,"I have data that I need to process: run Bracken on a Kraken2 report for species-level abundance estimation, utilizing multiple CPU threads for speed, saving the result to a specified output file"
bracken,bracken_01,bracken_01_09,informal,"Hey, can you help me run Bracken on a Kraken2 report for species-level abundance estimation?"
bracken,bracken_01,bracken_01_10,alternative,Perform: run Bracken on a Kraken2 report for species-level abundance estimation
bracken,bracken_02,bracken_02_01,original,run Bracken for genus-level abundance estimation
bracken,bracken_02,bracken_02_02,beginner,How do I run Bracken for genus-level abundance estimation?
bracken,bracken_02,bracken_02_03,student,I need to run Bracken for genus-level abundance estimation
bracken,bracken_02,bracken_02_04,polite,Please run Bracken for genus-level abundance estimation
bracken,bracken_02,bracken_02_05,sysadmin,Use bracken to run Bracken for genus-level abundance estimation
bracken,bracken_02,bracken_02_06,goal_oriented,I want to run Bracken for genus-level abundance estimation
bracken,bracken_02,bracken_02_07,expert,run Bracken genus-level abundance estimation
bracken,bracken_02,bracken_02_08,detailed,"I have data that I need to process: run Bracken for genus-level abundance estimation, utilizing multiple CPU threads for speed, saving the result to a specified output file"
bracken,bracken_02,bracken_02_09,informal,"Hey, can you help me run Bracken for genus-level abundance estimation?"
bracken,bracken_02,bracken_02_10,alternative,Perform: run Bracken for genus-level abundance estimation
bracken,bracken_03,bracken_03_01,original,combine Bracken results from multiple samples into one table
bracken,bracken_03,bracken_03_02,beginner,How do I combine Bracken results from multiple samples into one table?
bracken,bracken_03,bracken_03_03,student,I need to combine Bracken results from multiple samples into one table
bracken,bracken_03,bracken_03_04,polite,Please combine Bracken results from multiple samples into one table
bracken,bracken_03,bracken_03_05,sysadmin,Use bracken to combine Bracken results from multiple samples into one table
bracken,bracken_03,bracken_03_06,goal_oriented,I want to combine Bracken results from multiple samples into one table
bracken,bracken_03,bracken_03_07,expert,combine Bracken results multiple samples one table
bracken,bracken_03,bracken_03_08,detailed,"I have data that I need to process: combine Bracken results from multiple samples into one table, saving the result to a specified output file"
bracken,bracken_03,bracken_03_09,informal,"Hey, can you help me combine Bracken results from multiple samples into one table?"
bracken,bracken_03,bracken_03_10,alternative,Perform: combine Bracken results from multiple samples into one table
bracken,bracken_04,bracken_04_01,original,run Bracken on short reads (75 bp)
bracken,bracken_04,bracken_04_02,beginner,How do I run Bracken on short reads (75 bp)?
bracken,bracken_04,bracken_04_03,student,I need to run Bracken on short reads (75 bp)
bracken,bracken_04,bracken_04_04,polite,Please run Bracken on short reads (75 bp)
bracken,bracken_04,bracken_04_05,sysadmin,Use bracken to run Bracken on short reads (75 bp)
bracken,bracken_04,bracken_04_06,goal_oriented,I want to run Bracken on short reads (75 bp)
bracken,bracken_04,bracken_04_07,expert,run Bracken on short reads (75 bp)
bracken,bracken_04,bracken_04_08,detailed,"I have data that I need to process: run Bracken on short reads (75 bp), utilizing multiple CPU threads for speed, saving the result to a specified output file"
bracken,bracken_04,bracken_04_09,informal,"Hey, can you help me run Bracken on short reads (75 bp)?"
bracken,bracken_04,bracken_04_10,alternative,Perform: run Bracken on short reads (75 bp)
bracken,bracken_05,bracken_05_01,original,run Bracken on a Kraken2 report for species-level abundance estimation with default parameters
bracken,bracken_05,bracken_05_02,beginner,How do I run Bracken on a Kraken2 report for species-level abundance estimation with default parameters?
bracken,bracken_05,bracken_05_03,student,I need to run Bracken on a Kraken2 report for species-level abundance estimation with default parameters
bracken,bracken_05,bracken_05_04,polite,Please run Bracken on a Kraken2 report for species-level abundance estimation with default parameters
bracken,bracken_05,bracken_05_05,sysadmin,Use bracken to run Bracken on a Kraken2 report for species-level abundance estimation with default parameters
bracken,bracken_05,bracken_05_06,goal_oriented,I want to run Bracken on a Kraken2 report for species-level abundance estimation with default parameters
bracken,bracken_05,bracken_05_07,expert,run Bracken on Kraken2 report species-level abundance estimation default parameters
bracken,bracken_05,bracken_05_08,detailed,"I have data that I need to process: run Bracken on a Kraken2 report for species-level abundance estimation with default parameters, utilizing multiple CPU threads for speed, saving the result to a specified output file"
bracken,bracken_05,bracken_05_09,informal,"Hey, can you help me run Bracken on a Kraken2 report for species-level abundance estimation with default parameters?"
bracken,bracken_05,bracken_05_10,alternative,"With default parameters, run Bracken on a Kraken2 report for species-level abundance estimation"
bracken,bracken_06,bracken_06_01,original,run Bracken for genus-level abundance estimation with verbose output
bracken,bracken_06,bracken_06_02,beginner,How do I run Bracken for genus-level abundance estimation with verbose output?
bracken,bracken_06,bracken_06_03,student,I need to run Bracken for genus-level abundance estimation with verbose output
bracken,bracken_06,bracken_06_04,polite,Please run Bracken for genus-level abundance estimation with verbose output
bracken,bracken_06,bracken_06_05,sysadmin,Use bracken to run Bracken for genus-level abundance estimation with verbose output
bracken,bracken_06,bracken_06_06,goal_oriented,I want to run Bracken for genus-level abundance estimation with verbose output
bracken,bracken_06,bracken_06_07,expert,run Bracken genus-level abundance estimation verbose output
bracken,bracken_06,bracken_06_08,detailed,"I have data that I need to process: run Bracken for genus-level abundance estimation with verbose output, utilizing multiple CPU threads for speed, saving the result to a specified output file"
bracken,bracken_06,bracken_06_09,informal,"Hey, can you help me run Bracken for genus-level abundance estimation with verbose output?"
bracken,bracken_06,bracken_06_10,alternative,"With verbose output, run Bracken for genus-level abundance estimation"
bracken,bracken_07,bracken_07_01,original,combine Bracken results from multiple samples into one table using multiple threads
bracken,bracken_07,bracken_07_02,beginner,How do I combine Bracken results from multiple samples into one table using multiple threads?
bracken,bracken_07,bracken_07_03,student,I need to combine Bracken results from multiple samples into one table using multiple threads
bracken,bracken_07,bracken_07_04,polite,Please combine Bracken results from multiple samples into one table using multiple threads
bracken,bracken_07,bracken_07_05,sysadmin,Use bracken to combine Bracken results from multiple samples into one table using multiple threads
bracken,bracken_07,bracken_07_06,goal_oriented,I want to combine Bracken results from multiple samples into one table using multiple threads
bracken,bracken_07,bracken_07_07,expert,combine Bracken results multiple samples one table multiple threads
bracken,bracken_07,bracken_07_08,detailed,"I have data that I need to process: combine Bracken results from multiple samples into one table using multiple threads, utilizing multiple CPU threads for speed, saving the result to a specified output file"
bracken,bracken_07,bracken_07_09,informal,"Hey, can you help me combine Bracken results from multiple samples into one table using multiple threads?"
bracken,bracken_07,bracken_07_10,alternative,Perform: combine Bracken results from multiple samples into one table using multiple threads
bracken,bracken_08,bracken_08_01,original,run Bracken on short reads (75 bp) and write output to a file
bracken,bracken_08,bracken_08_02,beginner,How do I run Bracken on short reads (75 bp) and write output to a file?
bracken,bracken_08,bracken_08_03,student,I need to run Bracken on short reads (75 bp) and write output to a file
bracken,bracken_08,bracken_08_04,polite,Please run Bracken on short reads (75 bp) and write output to a file
bracken,bracken_08,bracken_08_05,sysadmin,Use bracken to run Bracken on short reads (75 bp) and write output to a file
bracken,bracken_08,bracken_08_06,goal_oriented,I want to run Bracken on short reads (75 bp) and write output to a file
bracken,bracken_08,bracken_08_07,expert,run Bracken on short reads (75 bp) write output file
bracken,bracken_08,bracken_08_08,detailed,"I have data that I need to process: run Bracken on short reads (75 bp) and write output to a file, utilizing multiple CPU threads for speed, saving the result to a specified output file"
bracken,bracken_08,bracken_08_09,informal,"Hey, can you help me run Bracken on short reads (75 bp) and write output to a file?"
bracken,bracken_08,bracken_08_10,alternative,Write output to a file after run Bracken on short reads (75 bp)
bracken,bracken_09,bracken_09_01,original,run Bracken on a Kraken2 report for species-level abundance estimation in quiet mode
bracken,bracken_09,bracken_09_02,beginner,How do I run Bracken on a Kraken2 report for species-level abundance estimation in quiet mode?
bracken,bracken_09,bracken_09_03,student,I need to run Bracken on a Kraken2 report for species-level abundance estimation in quiet mode
bracken,bracken_09,bracken_09_04,polite,Please run Bracken on a Kraken2 report for species-level abundance estimation in quiet mode
bracken,bracken_09,bracken_09_05,sysadmin,Use bracken to run Bracken on a Kraken2 report for species-level abundance estimation in quiet mode
bracken,bracken_09,bracken_09_06,goal_oriented,I want to run Bracken on a Kraken2 report for species-level abundance estimation in quiet mode
bracken,bracken_09,bracken_09_07,expert,run Bracken on Kraken2 report species-level abundance estimation quiet mode
bracken,bracken_09,bracken_09_08,detailed,"I have data that I need to process: run Bracken on a Kraken2 report for species-level abundance estimation in quiet mode, utilizing multiple CPU threads for speed, saving the result to a specified output file"
bracken,bracken_09,bracken_09_09,informal,"Hey, can you help me run Bracken on a Kraken2 report for species-level abundance estimation in quiet mode?"
bracken,bracken_09,bracken_09_10,alternative,Perform: run Bracken on a Kraken2 report for species-level abundance estimation in quiet mode
bracken,bracken_10,bracken_10_01,original,run Bracken for genus-level abundance estimation with default parameters
bracken,bracken_10,bracken_10_02,beginner,How do I run Bracken for genus-level abundance estimation with default parameters?
bracken,bracken_10,bracken_10_03,student,I need to run Bracken for genus-level abundance estimation with default parameters
bracken,bracken_10,bracken_10_04,polite,Please run Bracken for genus-level abundance estimation with default parameters
bracken,bracken_10,bracken_10_05,sysadmin,Use bracken to run Bracken for genus-level abundance estimation with default parameters
bracken,bracken_10,bracken_10_06,goal_oriented,I want to run Bracken for genus-level abundance estimation with default parameters
bracken,bracken_10,bracken_10_07,expert,run Bracken genus-level abundance estimation default parameters
bracken,bracken_10,bracken_10_08,detailed,"I have data that I need to process: run Bracken for genus-level abundance estimation with default parameters, utilizing multiple CPU threads for speed, saving the result to a specified output file"
bracken,bracken_10,bracken_10_09,informal,"Hey, can you help me run Bracken for genus-level abundance estimation with default parameters?"
bracken,bracken_10,bracken_10_10,alternative,"With default parameters, run Bracken for genus-level abundance estimation"
busco,busco_01,busco_01_01,original,assess completeness of a bacterial genome assembly
busco,busco_01,busco_01_02,beginner,How do I assess completeness of a bacterial genome assembly?
busco,busco_01,busco_01_03,student,I need to assess completeness of a bacterial genome assembly
busco,busco_01,busco_01_04,polite,Please assess completeness of a bacterial genome assembly
busco,busco_01,busco_01_05,sysadmin,Use busco to assess completeness of a bacterial genome assembly
busco,busco_01,busco_01_06,goal_oriented,I want to assess completeness of a bacterial genome assembly
busco,busco_01,busco_01_07,expert,assess completeness of bacterial genome assembly
busco,busco_01,busco_01_08,detailed,"I have data that I need to process: assess completeness of a bacterial genome assembly, saving the result to a specified output file"
busco,busco_01,busco_01_09,informal,"Hey, can you help me assess completeness of a bacterial genome assembly?"
busco,busco_01,busco_01_10,alternative,Perform: assess completeness of a bacterial genome assembly
busco,busco_02,busco_02_01,original,assess completeness of a eukaryotic genome assembly
busco,busco_02,busco_02_02,beginner,How do I assess completeness of a eukaryotic genome assembly?
busco,busco_02,busco_02_03,student,I need to assess completeness of a eukaryotic genome assembly
busco,busco_02,busco_02_04,polite,Please assess completeness of a eukaryotic genome assembly
busco,busco_02,busco_02_05,sysadmin,Use busco to assess completeness of a eukaryotic genome assembly
busco,busco_02,busco_02_06,goal_oriented,I want to assess completeness of a eukaryotic genome assembly
busco,busco_02,busco_02_07,expert,assess completeness of eukaryotic genome assembly
busco,busco_02,busco_02_08,detailed,"I have data that I need to process: assess completeness of a eukaryotic genome assembly, saving the result to a specified output file"
busco,busco_02,busco_02_09,informal,"Hey, can you help me assess completeness of a eukaryotic genome assembly?"
busco,busco_02,busco_02_10,alternative,Perform: assess completeness of a eukaryotic genome assembly
busco,busco_03,busco_03_01,original,assess proteome completeness from predicted proteins
busco,busco_03,busco_03_02,beginner,How do I assess proteome completeness from predicted proteins?
busco,busco_03,busco_03_03,student,I need to assess proteome completeness from predicted proteins
busco,busco_03,busco_03_04,polite,Please assess proteome completeness from predicted proteins
busco,busco_03,busco_03_05,sysadmin,Use busco to assess proteome completeness from predicted proteins
busco,busco_03,busco_03_06,goal_oriented,I want to assess proteome completeness from predicted proteins
busco,busco_03,busco_03_07,expert,assess proteome completeness predicted proteins
busco,busco_03,busco_03_08,detailed,"I have data that I need to process: assess proteome completeness from predicted proteins, saving the result to a specified output file"
busco,busco_03,busco_03_09,informal,"Hey, can you help me assess proteome completeness from predicted proteins?"
busco,busco_03,busco_03_10,alternative,Perform: assess proteome completeness from predicted proteins
busco,busco_04,busco_04_01,original,assess transcriptome completeness
busco,busco_04,busco_04_02,beginner,How do I assess transcriptome completeness?
busco,busco_04,busco_04_03,student,I need to assess transcriptome completeness
busco,busco_04,busco_04_04,polite,Please assess transcriptome completeness
busco,busco_04,busco_04_05,sysadmin,Use busco to assess transcriptome completeness
busco,busco_04,busco_04_06,goal_oriented,I want to assess transcriptome completeness
busco,busco_04,busco_04_07,expert,assess transcriptome completeness
busco,busco_04,busco_04_08,detailed,"I have data that I need to process: assess transcriptome completeness, saving the result to a specified output file"
busco,busco_04,busco_04_09,informal,"Hey, can you help me assess transcriptome completeness?"
busco,busco_04,busco_04_10,alternative,Perform: assess transcriptome completeness
busco,busco_05,busco_05_01,original,run BUSCO with automatic lineage detection
busco,busco_05,busco_05_02,beginner,How do I run BUSCO with automatic lineage detection?
busco,busco_05,busco_05_03,student,I need to run BUSCO with automatic lineage detection
busco,busco_05,busco_05_04,polite,Please run BUSCO with automatic lineage detection
busco,busco_05,busco_05_05,sysadmin,Use busco to run BUSCO with automatic lineage detection
busco,busco_05,busco_05_06,goal_oriented,I want to run BUSCO with automatic lineage detection
busco,busco_05,busco_05_07,expert,run BUSCO automatic lineage detection
busco,busco_05,busco_05_08,detailed,"I have data that I need to process: run BUSCO with automatic lineage detection, saving the result to a specified output file"
busco,busco_05,busco_05_09,informal,"Hey, can you help me run BUSCO with automatic lineage detection?"
busco,busco_05,busco_05_10,alternative,"With automatic lineage detection, run BUSCO"
busco,busco_06,busco_06_01,original,assess completeness of a bacterial genome assembly with verbose output
busco,busco_06,busco_06_02,beginner,How do I assess completeness of a bacterial genome assembly with verbose output?
busco,busco_06,busco_06_03,student,I need to assess completeness of a bacterial genome assembly with verbose output
busco,busco_06,busco_06_04,polite,Please assess completeness of a bacterial genome assembly with verbose output
busco,busco_06,busco_06_05,sysadmin,Use busco to assess completeness of a bacterial genome assembly with verbose output
busco,busco_06,busco_06_06,goal_oriented,I want to assess completeness of a bacterial genome assembly with verbose output
busco,busco_06,busco_06_07,expert,assess completeness of bacterial genome assembly verbose output
busco,busco_06,busco_06_08,detailed,"I have data that I need to process: assess completeness of a bacterial genome assembly with verbose output, saving the result to a specified output file"
busco,busco_06,busco_06_09,informal,"Hey, can you help me assess completeness of a bacterial genome assembly with verbose output?"
busco,busco_06,busco_06_10,alternative,"With verbose output, assess completeness of a bacterial genome assembly"
busco,busco_07,busco_07_01,original,assess completeness of a eukaryotic genome assembly using multiple threads
busco,busco_07,busco_07_02,beginner,How do I assess completeness of a eukaryotic genome assembly using multiple threads?
busco,busco_07,busco_07_03,student,I need to assess completeness of a eukaryotic genome assembly using multiple threads
busco,busco_07,busco_07_04,polite,Please assess completeness of a eukaryotic genome assembly using multiple threads
busco,busco_07,busco_07_05,sysadmin,Use busco to assess completeness of a eukaryotic genome assembly using multiple threads
busco,busco_07,busco_07_06,goal_oriented,I want to assess completeness of a eukaryotic genome assembly using multiple threads
busco,busco_07,busco_07_07,expert,assess completeness of eukaryotic genome assembly multiple threads
busco,busco_07,busco_07_08,detailed,"I have data that I need to process: assess completeness of a eukaryotic genome assembly using multiple threads, utilizing multiple CPU threads for speed, saving the result to a specified output file"
busco,busco_07,busco_07_09,informal,"Hey, can you help me assess completeness of a eukaryotic genome assembly using multiple threads?"
busco,busco_07,busco_07_10,alternative,Perform: assess completeness of a eukaryotic genome assembly using multiple threads
busco,busco_08,busco_08_01,original,assess proteome completeness from predicted proteins and write output to a file
busco,busco_08,busco_08_02,beginner,How do I assess proteome completeness from predicted proteins and write output to a file?
busco,busco_08,busco_08_03,student,I need to assess proteome completeness from predicted proteins and write output to a file
busco,busco_08,busco_08_04,polite,Please assess proteome completeness from predicted proteins and write output to a file
busco,busco_08,busco_08_05,sysadmin,Use busco to assess proteome completeness from predicted proteins and write output to a file
busco,busco_08,busco_08_06,goal_oriented,I want to assess proteome completeness from predicted proteins and write output to a file
busco,busco_08,busco_08_07,expert,assess proteome completeness predicted proteins write output file
busco,busco_08,busco_08_08,detailed,"I have data that I need to process: assess proteome completeness from predicted proteins and write output to a file, saving the result to a specified output file"
busco,busco_08,busco_08_09,informal,"Hey, can you help me assess proteome completeness from predicted proteins and write output to a file?"
busco,busco_08,busco_08_10,alternative,Write output to a file after assess proteome completeness from predicted proteins
busco,busco_09,busco_09_01,original,assess transcriptome completeness in quiet mode
busco,busco_09,busco_09_02,beginner,How do I assess transcriptome completeness in quiet mode?
busco,busco_09,busco_09_03,student,I need to assess transcriptome completeness in quiet mode
busco,busco_09,busco_09_04,polite,Please assess transcriptome completeness in quiet mode
busco,busco_09,busco_09_05,sysadmin,Use busco to assess transcriptome completeness in quiet mode
busco,busco_09,busco_09_06,goal_oriented,I want to assess transcriptome completeness in quiet mode
busco,busco_09,busco_09_07,expert,assess transcriptome completeness quiet mode
busco,busco_09,busco_09_08,detailed,"I have data that I need to process: assess transcriptome completeness in quiet mode, saving the result to a specified output file"
busco,busco_09,busco_09_09,informal,"Hey, can you help me assess transcriptome completeness in quiet mode?"
busco,busco_09,busco_09_10,alternative,Perform: assess transcriptome completeness in quiet mode
busco,busco_10,busco_10_01,original,run BUSCO with automatic lineage detection with default parameters
busco,busco_10,busco_10_02,beginner,How do I run BUSCO with automatic lineage detection with default parameters?
busco,busco_10,busco_10_03,student,I need to run BUSCO with automatic lineage detection with default parameters
busco,busco_10,busco_10_04,polite,Please run BUSCO with automatic lineage detection with default parameters
busco,busco_10,busco_10_05,sysadmin,Use busco to run BUSCO with automatic lineage detection with default parameters
busco,busco_10,busco_10_06,goal_oriented,I want to run BUSCO with automatic lineage detection with default parameters
busco,busco_10,busco_10_07,expert,run BUSCO automatic lineage detection default parameters
busco,busco_10,busco_10_08,detailed,"I have data that I need to process: run BUSCO with automatic lineage detection with default parameters, saving the result to a specified output file"
busco,busco_10,busco_10_09,informal,"Hey, can you help me run BUSCO with automatic lineage detection with default parameters?"
busco,busco_10,busco_10_10,alternative,"With automatic lineage detection with default parameters, run BUSCO"
bwa-mem2,bwa-mem2_01,bwa-mem2_01_01,original,build BWA-MEM2 index from reference genome
bwa-mem2,bwa-mem2_01,bwa-mem2_01_02,beginner,How do I build BWA-MEM2 index from reference genome?
bwa-mem2,bwa-mem2_01,bwa-mem2_01_03,student,I need to build BWA-MEM2 index from reference genome
bwa-mem2,bwa-mem2_01,bwa-mem2_01_04,polite,Please build BWA-MEM2 index from reference genome
bwa-mem2,bwa-mem2_01,bwa-mem2_01_05,sysadmin,Use bwa-mem2 to build BWA-MEM2 index from reference genome
bwa-mem2,bwa-mem2_01,bwa-mem2_01_06,goal_oriented,I want to build BWA-MEM2 index from reference genome
bwa-mem2,bwa-mem2_01,bwa-mem2_01_07,expert,build BWA-MEM2 index reference genome
bwa-mem2,bwa-mem2_01,bwa-mem2_01_08,detailed,I have data that I need to process: build BWA-MEM2 index from reference genome
bwa-mem2,bwa-mem2_01,bwa-mem2_01_09,informal,"Hey, can you help me build BWA-MEM2 index from reference genome?"
bwa-mem2,bwa-mem2_01,bwa-mem2_01_10,alternative,Perform: build BWA-MEM2 index from reference genome
bwa-mem2,bwa-mem2_02,bwa-mem2_02_01,original,align paired-end reads to reference using 16 threads
bwa-mem2,bwa-mem2_02,bwa-mem2_02_02,beginner,How do I align paired-end reads to reference using 16 threads?
bwa-mem2,bwa-mem2_02,bwa-mem2_02_03,student,I need to align paired-end reads to reference using 16 threads
bwa-mem2,bwa-mem2_02,bwa-mem2_02_04,polite,Please align paired-end reads to reference using 16 threads
bwa-mem2,bwa-mem2_02,bwa-mem2_02_05,sysadmin,Use bwa-mem2 to align paired-end reads to reference using 16 threads
bwa-mem2,bwa-mem2_02,bwa-mem2_02_06,goal_oriented,I want to align paired-end reads to reference using 16 threads
bwa-mem2,bwa-mem2_02,bwa-mem2_02_07,expert,align paired-end reads reference 16 threads
bwa-mem2,bwa-mem2_02,bwa-mem2_02_08,detailed,"I have data that I need to process: align paired-end reads to reference using 16 threads, utilizing multiple CPU threads for speed, saving the result to a specified output file"
bwa-mem2,bwa-mem2_02,bwa-mem2_02_09,informal,"Hey, can you help me align paired-end reads to reference using 16 threads?"
bwa-mem2,bwa-mem2_02,bwa-mem2_02_10,alternative,Output reference using 16 threads by performing: align paired-end reads
bwa-mem2,bwa-mem2_03,bwa-mem2_03_01,original,align paired-end reads with GATK read group
bwa-mem2,bwa-mem2_03,bwa-mem2_03_02,beginner,How do I align paired-end reads with GATK read group?
bwa-mem2,bwa-mem2_03,bwa-mem2_03_03,student,I need to align paired-end reads with GATK read group
bwa-mem2,bwa-mem2_03,bwa-mem2_03_04,polite,Please align paired-end reads with GATK read group
bwa-mem2,bwa-mem2_03,bwa-mem2_03_05,sysadmin,Use bwa-mem2 to align paired-end reads with GATK read group
bwa-mem2,bwa-mem2_03,bwa-mem2_03_06,goal_oriented,I want to align paired-end reads with GATK read group
bwa-mem2,bwa-mem2_03,bwa-mem2_03_07,expert,align paired-end reads GATK read group
bwa-mem2,bwa-mem2_03,bwa-mem2_03_08,detailed,"I have data that I need to process: align paired-end reads with GATK read group, utilizing multiple CPU threads for speed, saving the result to a specified output file"
bwa-mem2,bwa-mem2_03,bwa-mem2_03_09,informal,"Hey, can you help me align paired-end reads with GATK read group?"
bwa-mem2,bwa-mem2_03,bwa-mem2_03_10,alternative,"With GATK read group, align paired-end reads"
bwa-mem2,bwa-mem2_04,bwa-mem2_04_01,original,build BWA-MEM2 index from reference genome in quiet mode
bwa-mem2,bwa-mem2_04,bwa-mem2_04_02,beginner,How do I build BWA-MEM2 index from reference genome in quiet mode?
bwa-mem2,bwa-mem2_04,bwa-mem2_04_03,student,I need to build BWA-MEM2 index from reference genome in quiet mode
bwa-mem2,bwa-mem2_04,bwa-mem2_04_04,polite,Please build BWA-MEM2 index from reference genome in quiet mode
bwa-mem2,bwa-mem2_04,bwa-mem2_04_05,sysadmin,Use bwa-mem2 to build BWA-MEM2 index from reference genome in quiet mode
bwa-mem2,bwa-mem2_04,bwa-mem2_04_06,goal_oriented,I want to build BWA-MEM2 index from reference genome in quiet mode
bwa-mem2,bwa-mem2_04,bwa-mem2_04_07,expert,build BWA-MEM2 index reference genome quiet mode
bwa-mem2,bwa-mem2_04,bwa-mem2_04_08,detailed,I have data that I need to process: build BWA-MEM2 index from reference genome in quiet mode
bwa-mem2,bwa-mem2_04,bwa-mem2_04_09,informal,"Hey, can you help me build BWA-MEM2 index from reference genome in quiet mode?"
bwa-mem2,bwa-mem2_04,bwa-mem2_04_10,alternative,Perform: build BWA-MEM2 index from reference genome in quiet mode
bwa-mem2,bwa-mem2_05,bwa-mem2_05_01,original,align paired-end reads to reference using 16 threads with default parameters
bwa-mem2,bwa-mem2_05,bwa-mem2_05_02,beginner,How do I align paired-end reads to reference using 16 threads with default parameters?
bwa-mem2,bwa-mem2_05,bwa-mem2_05_03,student,I need to align paired-end reads to reference using 16 threads with default parameters
bwa-mem2,bwa-mem2_05,bwa-mem2_05_04,polite,Please align paired-end reads to reference using 16 threads with default parameters
bwa-mem2,bwa-mem2_05,bwa-mem2_05_05,sysadmin,Use bwa-mem2 to align paired-end reads to reference using 16 threads with default parameters
bwa-mem2,bwa-mem2_05,bwa-mem2_05_06,goal_oriented,I want to align paired-end reads to reference using 16 threads with default parameters
bwa-mem2,bwa-mem2_05,bwa-mem2_05_07,expert,align paired-end reads reference 16 threads default parameters
bwa-mem2,bwa-mem2_05,bwa-mem2_05_08,detailed,"I have data that I need to process: align paired-end reads to reference using 16 threads with default parameters, utilizing multiple CPU threads for speed, saving the result to a specified output file"
bwa-mem2,bwa-mem2_05,bwa-mem2_05_09,informal,"Hey, can you help me align paired-end reads to reference using 16 threads with default parameters?"
bwa-mem2,bwa-mem2_05,bwa-mem2_05_10,alternative,"With default parameters, align paired-end reads to reference using 16 threads"
bwa-mem2,bwa-mem2_06,bwa-mem2_06_01,original,align paired-end reads with GATK read group
bwa-mem2,bwa-mem2_06,bwa-mem2_06_02,beginner,How do I align paired-end reads with GATK read group?
bwa-mem2,bwa-mem2_06,bwa-mem2_06_03,student,I need to align paired-end reads with GATK read group
bwa-mem2,bwa-mem2_06,bwa-mem2_06_04,polite,Please align paired-end reads with GATK read group
bwa-mem2,bwa-mem2_06,bwa-mem2_06_05,sysadmin,Use bwa-mem2 to align paired-end reads with GATK read group
bwa-mem2,bwa-mem2_06,bwa-mem2_06_06,goal_oriented,I want to align paired-end reads with GATK read group
bwa-mem2,bwa-mem2_06,bwa-mem2_06_07,expert,align paired-end reads GATK read group
bwa-mem2,bwa-mem2_06,bwa-mem2_06_08,detailed,"I have data that I need to process: align paired-end reads with GATK read group, utilizing multiple CPU threads for speed, saving the result to a specified output file"
bwa-mem2,bwa-mem2_06,bwa-mem2_06_09,informal,"Hey, can you help me align paired-end reads with GATK read group?"
bwa-mem2,bwa-mem2_06,bwa-mem2_06_10,alternative,"With GATK read group, align paired-end reads"
bwa-mem2,bwa-mem2_07,bwa-mem2_07_01,original,build BWA-MEM2 index from reference genome using multiple threads
bwa-mem2,bwa-mem2_07,bwa-mem2_07_02,beginner,How do I build BWA-MEM2 index from reference genome using multiple threads?
bwa-mem2,bwa-mem2_07,bwa-mem2_07_03,student,I need to build BWA-MEM2 index from reference genome using multiple threads
bwa-mem2,bwa-mem2_07,bwa-mem2_07_04,polite,Please build BWA-MEM2 index from reference genome using multiple threads
bwa-mem2,bwa-mem2_07,bwa-mem2_07_05,sysadmin,Use bwa-mem2 to build BWA-MEM2 index from reference genome using multiple threads
bwa-mem2,bwa-mem2_07,bwa-mem2_07_06,goal_oriented,I want to build BWA-MEM2 index from reference genome using multiple threads
bwa-mem2,bwa-mem2_07,bwa-mem2_07_07,expert,build BWA-MEM2 index reference genome multiple threads
bwa-mem2,bwa-mem2_07,bwa-mem2_07_08,detailed,"I have data that I need to process: build BWA-MEM2 index from reference genome using multiple threads, utilizing multiple CPU threads for speed"
bwa-mem2,bwa-mem2_07,bwa-mem2_07_09,informal,"Hey, can you help me build BWA-MEM2 index from reference genome using multiple threads?"
bwa-mem2,bwa-mem2_07,bwa-mem2_07_10,alternative,Perform: build BWA-MEM2 index from reference genome using multiple threads
bwa-mem2,bwa-mem2_08,bwa-mem2_08_01,original,align paired-end reads to reference using 16 threads
bwa-mem2,bwa-mem2_08,bwa-mem2_08_02,beginner,How do I align paired-end reads to reference using 16 threads?
bwa-mem2,bwa-mem2_08,bwa-mem2_08_03,student,I need to align paired-end reads to reference using 16 threads
bwa-mem2,bwa-mem2_08,bwa-mem2_08_04,polite,Please align paired-end reads to reference using 16 threads
bwa-mem2,bwa-mem2_08,bwa-mem2_08_05,sysadmin,Use bwa-mem2 to align paired-end reads to reference using 16 threads
bwa-mem2,bwa-mem2_08,bwa-mem2_08_06,goal_oriented,I want to align paired-end reads to reference using 16 threads
bwa-mem2,bwa-mem2_08,bwa-mem2_08_07,expert,align paired-end reads reference 16 threads
bwa-mem2,bwa-mem2_08,bwa-mem2_08_08,detailed,"I have data that I need to process: align paired-end reads to reference using 16 threads, utilizing multiple CPU threads for speed, saving the result to a specified output file"
bwa-mem2,bwa-mem2_08,bwa-mem2_08_09,informal,"Hey, can you help me align paired-end reads to reference using 16 threads?"
bwa-mem2,bwa-mem2_08,bwa-mem2_08_10,alternative,Output reference using 16 threads by performing: align paired-end reads
bwa-mem2,bwa-mem2_09,bwa-mem2_09_01,original,align paired-end reads with GATK read group
bwa-mem2,bwa-mem2_09,bwa-mem2_09_02,beginner,How do I align paired-end reads with GATK read group?
bwa-mem2,bwa-mem2_09,bwa-mem2_09_03,student,I need to align paired-end reads with GATK read group
bwa-mem2,bwa-mem2_09,bwa-mem2_09_04,polite,Please align paired-end reads with GATK read group
bwa-mem2,bwa-mem2_09,bwa-mem2_09_05,sysadmin,Use bwa-mem2 to align paired-end reads with GATK read group
bwa-mem2,bwa-mem2_09,bwa-mem2_09_06,goal_oriented,I want to align paired-end reads with GATK read group
bwa-mem2,bwa-mem2_09,bwa-mem2_09_07,expert,align paired-end reads GATK read group
bwa-mem2,bwa-mem2_09,bwa-mem2_09_08,detailed,"I have data that I need to process: align paired-end reads with GATK read group, utilizing multiple CPU threads for speed, saving the result to a specified output file"
bwa-mem2,bwa-mem2_09,bwa-mem2_09_09,informal,"Hey, can you help me align paired-end reads with GATK read group?"
bwa-mem2,bwa-mem2_09,bwa-mem2_09_10,alternative,"With GATK read group, align paired-end reads"
bwa-mem2,bwa-mem2_10,bwa-mem2_10_01,original,build BWA-MEM2 index from reference genome with default parameters
bwa-mem2,bwa-mem2_10,bwa-mem2_10_02,beginner,How do I build BWA-MEM2 index from reference genome with default parameters?
bwa-mem2,bwa-mem2_10,bwa-mem2_10_03,student,I need to build BWA-MEM2 index from reference genome with default parameters
bwa-mem2,bwa-mem2_10,bwa-mem2_10_04,polite,Please build BWA-MEM2 index from reference genome with default parameters
bwa-mem2,bwa-mem2_10,bwa-mem2_10_05,sysadmin,Use bwa-mem2 to build BWA-MEM2 index from reference genome with default parameters
bwa-mem2,bwa-mem2_10,bwa-mem2_10_06,goal_oriented,I want to build BWA-MEM2 index from reference genome with default parameters
bwa-mem2,bwa-mem2_10,bwa-mem2_10_07,expert,build BWA-MEM2 index reference genome default parameters
bwa-mem2,bwa-mem2_10,bwa-mem2_10_08,detailed,I have data that I need to process: build BWA-MEM2 index from reference genome with default parameters
bwa-mem2,bwa-mem2_10,bwa-mem2_10_09,informal,"Hey, can you help me build BWA-MEM2 index from reference genome with default parameters?"
bwa-mem2,bwa-mem2_10,bwa-mem2_10_10,alternative,"With default parameters, build BWA-MEM2 index from reference genome"
bwa,bwa_01,bwa_01_01,original,index a reference genome FASTA file
bwa,bwa_01,bwa_01_02,beginner,How do I index a reference genome FASTA file?
bwa,bwa_01,bwa_01_03,student,I need to index a reference genome FASTA file
bwa,bwa_01,bwa_01_04,polite,Please index a reference genome FASTA file
bwa,bwa_01,bwa_01_05,sysadmin,Use bwa to index a reference genome FASTA file
bwa,bwa_01,bwa_01_06,goal_oriented,I want to index a reference genome FASTA file
bwa,bwa_01,bwa_01_07,expert,index reference genome FASTA file
bwa,bwa_01,bwa_01_08,detailed,I have data that I need to process: index a reference genome FASTA file
bwa,bwa_01,bwa_01_09,informal,"Hey, can you help me index a reference genome FASTA file?"
bwa,bwa_01,bwa_01_10,alternative,Perform: index a reference genome FASTA file
bwa,bwa_02,bwa_02_01,original,align paired-end reads to a reference genome using 8 threads
bwa,bwa_02,bwa_02_02,beginner,How do I align paired-end reads to a reference genome using 8 threads?
bwa,bwa_02,bwa_02_03,student,I need to align paired-end reads to a reference genome using 8 threads
bwa,bwa_02,bwa_02_04,polite,Please align paired-end reads to a reference genome using 8 threads
bwa,bwa_02,bwa_02_05,sysadmin,Use bwa to align paired-end reads to a reference genome using 8 threads
bwa,bwa_02,bwa_02_06,goal_oriented,I want to align paired-end reads to a reference genome using 8 threads
bwa,bwa_02,bwa_02_07,expert,align paired-end reads reference genome 8 threads
bwa,bwa_02,bwa_02_08,detailed,"I have data that I need to process: align paired-end reads to a reference genome using 8 threads, utilizing multiple CPU threads for speed"
bwa,bwa_02,bwa_02_09,informal,"Hey, can you help me align paired-end reads to a reference genome using 8 threads?"
bwa,bwa_02,bwa_02_10,alternative,Output a reference genome using 8 threads by performing: align paired-end reads
bwa,bwa_03,bwa_03_01,original,align single-end reads and save as BAM with read group for GATK
bwa,bwa_03,bwa_03_02,beginner,How do I align single-end reads and save as BAM with read group for GATK?
bwa,bwa_03,bwa_03_03,student,I need to align single-end reads and save as BAM with read group for GATK
bwa,bwa_03,bwa_03_04,polite,Please align single-end reads and save as BAM with read group for GATK
bwa,bwa_03,bwa_03_05,sysadmin,Use bwa to align single-end reads and save as BAM with read group for GATK
bwa,bwa_03,bwa_03_06,goal_oriented,I want to align single-end reads and save as BAM with read group for GATK
bwa,bwa_03,bwa_03_07,expert,align single-end reads save as BAM read group GATK
bwa,bwa_03,bwa_03_08,detailed,"I have data that I need to process: align single-end reads and save as BAM with read group for GATK, utilizing multiple CPU threads for speed"
bwa,bwa_03,bwa_03_09,informal,"Hey, can you help me align single-end reads and save as BAM with read group for GATK?"
bwa,bwa_03,bwa_03_10,alternative,Save as BAM with read group for GATK after align single-end reads
bwa,bwa_04,bwa_04_01,original,align long reads (PacBio/Oxford Nanopore) to reference
bwa,bwa_04,bwa_04_02,beginner,How do I align long reads (PacBio/Oxford Nanopore) to reference?
bwa,bwa_04,bwa_04_03,student,I need to align long reads (PacBio/Oxford Nanopore) to reference
bwa,bwa_04,bwa_04_04,polite,Please align long reads (PacBio/Oxford Nanopore) to reference
bwa,bwa_04,bwa_04_05,sysadmin,Use bwa to align long reads (PacBio/Oxford Nanopore) to reference
bwa,bwa_04,bwa_04_06,goal_oriented,I want to align long reads (PacBio/Oxford Nanopore) to reference
bwa,bwa_04,bwa_04_07,expert,align long reads (PacBio/Oxford Nanopore) reference
bwa,bwa_04,bwa_04_08,detailed,I have data that I need to process: align long reads (PacBio/Oxford Nanopore) to reference
bwa,bwa_04,bwa_04_09,informal,"Hey, can you help me align long reads (PacBio/Oxford Nanopore) to reference?"
bwa,bwa_04,bwa_04_10,alternative,Output reference by performing: align long reads (PacBio/Oxford Nanopore)
bwa,bwa_05,bwa_05_01,original,align paired-end reads and sort the output directly to a BAM file
bwa,bwa_05,bwa_05_02,beginner,How do I align paired-end reads and sort the output directly to a BAM file?
bwa,bwa_05,bwa_05_03,student,I need to align paired-end reads and sort the output directly to a BAM file
bwa,bwa_05,bwa_05_04,polite,Please align paired-end reads and sort the output directly to a BAM file
bwa,bwa_05,bwa_05_05,sysadmin,Use bwa to align paired-end reads and sort the output directly to a BAM file
bwa,bwa_05,bwa_05_06,goal_oriented,I want to align paired-end reads and sort the output directly to a BAM file
bwa,bwa_05,bwa_05_07,expert,align paired-end reads sort output directly BAM file
bwa,bwa_05,bwa_05_08,detailed,"I have data that I need to process: align paired-end reads and sort the output directly to a BAM file, utilizing multiple CPU threads for speed, saving the result to a specified output file"
bwa,bwa_05,bwa_05_09,informal,"Hey, can you help me align paired-end reads and sort the output directly to a BAM file?"
bwa,bwa_05,bwa_05_10,alternative,Sort the output directly to a BAM file after align paired-end reads
bwa,bwa_06,bwa_06_01,original,align paired-end reads with complete read group for GATK HaplotypeCaller
bwa,bwa_06,bwa_06_02,beginner,How do I align paired-end reads with complete read group for GATK HaplotypeCaller?
bwa,bwa_06,bwa_06_03,student,I need to align paired-end reads with complete read group for GATK HaplotypeCaller
bwa,bwa_06,bwa_06_04,polite,Please align paired-end reads with complete read group for GATK HaplotypeCaller
bwa,bwa_06,bwa_06_05,sysadmin,Use bwa to align paired-end reads with complete read group for GATK HaplotypeCaller
bwa,bwa_06,bwa_06_06,goal_oriented,I want to align paired-end reads with complete read group for GATK HaplotypeCaller
bwa,bwa_06,bwa_06_07,expert,align paired-end reads complete read group GATK HaplotypeCaller
bwa,bwa_06,bwa_06_08,detailed,"I have data that I need to process: align paired-end reads with complete read group for GATK HaplotypeCaller, utilizing multiple CPU threads for speed, saving the result to a specified output file"
bwa,bwa_06,bwa_06_09,informal,"Hey, can you help me align paired-end reads with complete read group for GATK HaplotypeCaller?"
bwa,bwa_06,bwa_06_10,alternative,"With complete read group for GATK HaplotypeCaller, align paired-end reads"
bwa,bwa_07,bwa_07_01,original,align paired-end reads and report only mapped reads
bwa,bwa_07,bwa_07_02,beginner,How do I align paired-end reads and report only mapped reads?
bwa,bwa_07,bwa_07_03,student,I need to align paired-end reads and report only mapped reads
bwa,bwa_07,bwa_07_04,polite,Please align paired-end reads and report only mapped reads
bwa,bwa_07,bwa_07_05,sysadmin,Use bwa to align paired-end reads and report only mapped reads
bwa,bwa_07,bwa_07_06,goal_oriented,I want to align paired-end reads and report only mapped reads
bwa,bwa_07,bwa_07_07,expert,align paired-end reads report only mapped reads
bwa,bwa_07,bwa_07_08,detailed,"I have data that I need to process: align paired-end reads and report only mapped reads, utilizing multiple CPU threads for speed, saving the result to a specified output file"
bwa,bwa_07,bwa_07_09,informal,"Hey, can you help me align paired-end reads and report only mapped reads?"
bwa,bwa_07,bwa_07_10,alternative,Report only mapped reads after align paired-end reads
bwa,bwa_08,bwa_08_01,original,align with specific gap extension and mismatch penalties
bwa,bwa_08,bwa_08_02,beginner,How do I align with specific gap extension and mismatch penalties?
bwa,bwa_08,bwa_08_03,student,I need to align with specific gap extension and mismatch penalties
bwa,bwa_08,bwa_08_04,polite,Please align with specific gap extension and mismatch penalties
bwa,bwa_08,bwa_08_05,sysadmin,Use bwa to align with specific gap extension and mismatch penalties
bwa,bwa_08,bwa_08_06,goal_oriented,I want to align with specific gap extension and mismatch penalties
bwa,bwa_08,bwa_08_07,expert,align specific gap extension mismatch penalties
bwa,bwa_08,bwa_08_08,detailed,"I have data that I need to process: align with specific gap extension and mismatch penalties, utilizing multiple CPU threads for speed"
bwa,bwa_08,bwa_08_09,informal,"Hey, can you help me align with specific gap extension and mismatch penalties?"
bwa,bwa_08,bwa_08_10,alternative,Mismatch penalties after align with specific gap extension
bwa,bwa_09,bwa_09_01,original,align paired-end reads in a pipeline saving both BAM and stats
bwa,bwa_09,bwa_09_02,beginner,How do I align paired-end reads in a pipeline saving both BAM and stats?
bwa,bwa_09,bwa_09_03,student,I need to align paired-end reads in a pipeline saving both BAM and stats
bwa,bwa_09,bwa_09_04,polite,Please align paired-end reads in a pipeline saving both BAM and stats
bwa,bwa_09,bwa_09_05,sysadmin,Use bwa to align paired-end reads in a pipeline saving both BAM and stats
bwa,bwa_09,bwa_09_06,goal_oriented,I want to align paired-end reads in a pipeline saving both BAM and stats
bwa,bwa_09,bwa_09_07,expert,align paired-end reads pipeline saving both BAM stats
bwa,bwa_09,bwa_09_08,detailed,"I have data that I need to process: align paired-end reads in a pipeline saving both BAM and stats, utilizing multiple CPU threads for speed, saving the result to a specified output file"
bwa,bwa_09,bwa_09_09,informal,"Hey, can you help me align paired-end reads in a pipeline saving both BAM and stats?"
bwa,bwa_09,bwa_09_10,alternative,Stats after align paired-end reads in a pipeline saving both BAM
bwa,bwa_10,bwa_10_01,original,align with soft-clipping allowed for structural variant discovery
bwa,bwa_10,bwa_10_02,beginner,How do I align with soft-clipping allowed for structural variant discovery?
bwa,bwa_10,bwa_10_03,student,I need to align with soft-clipping allowed for structural variant discovery
bwa,bwa_10,bwa_10_04,polite,Please align with soft-clipping allowed for structural variant discovery
bwa,bwa_10,bwa_10_05,sysadmin,Use bwa to align with soft-clipping allowed for structural variant discovery
bwa,bwa_10,bwa_10_06,goal_oriented,I want to align with soft-clipping allowed for structural variant discovery
bwa,bwa_10,bwa_10_07,expert,align soft-clipping allowed structural variant discovery
bwa,bwa_10,bwa_10_08,detailed,"I have data that I need to process: align with soft-clipping allowed for structural variant discovery, utilizing multiple CPU threads for speed, saving the result to a specified output file"
bwa,bwa_10,bwa_10_09,informal,"Hey, can you help me align with soft-clipping allowed for structural variant discovery?"
bwa,bwa_10,bwa_10_10,alternative,"With soft-clipping allowed for structural variant discovery, align"
canu,canu_01,canu_01_01,original,assemble bacterial genome from ONT reads
canu,canu_01,canu_01_02,beginner,How do I assemble bacterial genome from ONT reads?
canu,canu_01,canu_01_03,student,I need to assemble bacterial genome from ONT reads
canu,canu_01,canu_01_04,polite,Please assemble bacterial genome from ONT reads
canu,canu_01,canu_01_05,sysadmin,Use canu to assemble bacterial genome from ONT reads
canu,canu_01,canu_01_06,goal_oriented,I want to assemble bacterial genome from ONT reads
canu,canu_01,canu_01_07,expert,assemble bacterial genome ONT reads
canu,canu_01,canu_01_08,detailed,"I have data that I need to process: assemble bacterial genome from ONT reads, utilizing multiple CPU threads for speed"
canu,canu_01,canu_01_09,informal,"Hey, can you help me assemble bacterial genome from ONT reads?"
canu,canu_01,canu_01_10,alternative,Perform: assemble bacterial genome from ONT reads
canu,canu_02,canu_02_01,original,assemble genome from PacBio HiFi reads
canu,canu_02,canu_02_02,beginner,How do I assemble genome from PacBio HiFi reads?
canu,canu_02,canu_02_03,student,I need to assemble genome from PacBio HiFi reads
canu,canu_02,canu_02_04,polite,Please assemble genome from PacBio HiFi reads
canu,canu_02,canu_02_05,sysadmin,Use canu to assemble genome from PacBio HiFi reads
canu,canu_02,canu_02_06,goal_oriented,I want to assemble genome from PacBio HiFi reads
canu,canu_02,canu_02_07,expert,assemble genome PacBio HiFi reads
canu,canu_02,canu_02_08,detailed,"I have data that I need to process: assemble genome from PacBio HiFi reads, utilizing multiple CPU threads for speed"
canu,canu_02,canu_02_09,informal,"Hey, can you help me assemble genome from PacBio HiFi reads?"
canu,canu_02,canu_02_10,alternative,Perform: assemble genome from PacBio HiFi reads
canu,canu_03,canu_03_01,original,assemble metagenome from ONT reads
canu,canu_03,canu_03_02,beginner,How do I assemble metagenome from ONT reads?
canu,canu_03,canu_03_03,student,I need to assemble metagenome from ONT reads
canu,canu_03,canu_03_04,polite,Please assemble metagenome from ONT reads
canu,canu_03,canu_03_05,sysadmin,Use canu to assemble metagenome from ONT reads
canu,canu_03,canu_03_06,goal_oriented,I want to assemble metagenome from ONT reads
canu,canu_03,canu_03_07,expert,assemble metagenome ONT reads
canu,canu_03,canu_03_08,detailed,"I have data that I need to process: assemble metagenome from ONT reads, utilizing multiple CPU threads for speed"
canu,canu_03,canu_03_09,informal,"Hey, can you help me assemble metagenome from ONT reads?"
canu,canu_03,canu_03_10,alternative,Perform: assemble metagenome from ONT reads
canu,canu_04,canu_04_01,original,run only the assembly stage (skip correction and trimming)
canu,canu_04,canu_04_02,beginner,How do I run only the assembly stage (skip correction and trimming)?
canu,canu_04,canu_04_03,student,I need to run only the assembly stage (skip correction and trimming)
canu,canu_04,canu_04_04,polite,Please run only the assembly stage (skip correction and trimming)
canu,canu_04,canu_04_05,sysadmin,Use canu to run only the assembly stage (skip correction and trimming)
canu,canu_04,canu_04_06,goal_oriented,I want to run only the assembly stage (skip correction and trimming)
canu,canu_04,canu_04_07,expert,run only assembly stage (skip correction trimming)
canu,canu_04,canu_04_08,detailed,"I have data that I need to process: run only the assembly stage (skip correction and trimming), utilizing multiple CPU threads for speed"
canu,canu_04,canu_04_09,informal,"Hey, can you help me run only the assembly stage (skip correction and trimming)?"
canu,canu_04,canu_04_10,alternative,Trimming) after run only the assembly stage (skip correction
canu,canu_05,canu_05_01,original,assemble bacterial genome from ONT reads with default parameters
canu,canu_05,canu_05_02,beginner,How do I assemble bacterial genome from ONT reads with default parameters?
canu,canu_05,canu_05_03,student,I need to assemble bacterial genome from ONT reads with default parameters
canu,canu_05,canu_05_04,polite,Please assemble bacterial genome from ONT reads with default parameters
canu,canu_05,canu_05_05,sysadmin,Use canu to assemble bacterial genome from ONT reads with default parameters
canu,canu_05,canu_05_06,goal_oriented,I want to assemble bacterial genome from ONT reads with default parameters
canu,canu_05,canu_05_07,expert,assemble bacterial genome ONT reads default parameters
canu,canu_05,canu_05_08,detailed,"I have data that I need to process: assemble bacterial genome from ONT reads with default parameters, utilizing multiple CPU threads for speed"
canu,canu_05,canu_05_09,informal,"Hey, can you help me assemble bacterial genome from ONT reads with default parameters?"
canu,canu_05,canu_05_10,alternative,"With default parameters, assemble bacterial genome from ONT reads"
canu,canu_06,canu_06_01,original,assemble genome from PacBio HiFi reads with verbose output
canu,canu_06,canu_06_02,beginner,How do I assemble genome from PacBio HiFi reads with verbose output?
canu,canu_06,canu_06_03,student,I need to assemble genome from PacBio HiFi reads with verbose output
canu,canu_06,canu_06_04,polite,Please assemble genome from PacBio HiFi reads with verbose output
canu,canu_06,canu_06_05,sysadmin,Use canu to assemble genome from PacBio HiFi reads with verbose output
canu,canu_06,canu_06_06,goal_oriented,I want to assemble genome from PacBio HiFi reads with verbose output
canu,canu_06,canu_06_07,expert,assemble genome PacBio HiFi reads verbose output
canu,canu_06,canu_06_08,detailed,"I have data that I need to process: assemble genome from PacBio HiFi reads with verbose output, utilizing multiple CPU threads for speed"
canu,canu_06,canu_06_09,informal,"Hey, can you help me assemble genome from PacBio HiFi reads with verbose output?"
canu,canu_06,canu_06_10,alternative,"With verbose output, assemble genome from PacBio HiFi reads"
canu,canu_07,canu_07_01,original,assemble metagenome from ONT reads using multiple threads
canu,canu_07,canu_07_02,beginner,How do I assemble metagenome from ONT reads using multiple threads?
canu,canu_07,canu_07_03,student,I need to assemble metagenome from ONT reads using multiple threads
canu,canu_07,canu_07_04,polite,Please assemble metagenome from ONT reads using multiple threads
canu,canu_07,canu_07_05,sysadmin,Use canu to assemble metagenome from ONT reads using multiple threads
canu,canu_07,canu_07_06,goal_oriented,I want to assemble metagenome from ONT reads using multiple threads
canu,canu_07,canu_07_07,expert,assemble metagenome ONT reads multiple threads
canu,canu_07,canu_07_08,detailed,"I have data that I need to process: assemble metagenome from ONT reads using multiple threads, utilizing multiple CPU threads for speed"
canu,canu_07,canu_07_09,informal,"Hey, can you help me assemble metagenome from ONT reads using multiple threads?"
canu,canu_07,canu_07_10,alternative,Perform: assemble metagenome from ONT reads using multiple threads
canu,canu_08,canu_08_01,original,run only the assembly stage (skip correction and trimming) and write output to a file
canu,canu_08,canu_08_02,beginner,How do I run only the assembly stage (skip correction and trimming) and write output to a file?
canu,canu_08,canu_08_03,student,I need to run only the assembly stage (skip correction and trimming) and write output to a file
canu,canu_08,canu_08_04,polite,Please run only the assembly stage (skip correction and trimming) and write output to a file
canu,canu_08,canu_08_05,sysadmin,Use canu to run only the assembly stage (skip correction and trimming) and write output to a file
canu,canu_08,canu_08_06,goal_oriented,I want to run only the assembly stage (skip correction and trimming) and write output to a file
canu,canu_08,canu_08_07,expert,run only assembly stage (skip correction trimming) write output file
canu,canu_08,canu_08_08,detailed,"I have data that I need to process: run only the assembly stage (skip correction and trimming) and write output to a file, utilizing multiple CPU threads for speed, saving the result to a specified output file"
canu,canu_08,canu_08_09,informal,"Hey, can you help me run only the assembly stage (skip correction and trimming) and write output to a file?"
canu,canu_08,canu_08_10,alternative,Trimming) and write output to a file after run only the assembly stage (skip correction
canu,canu_09,canu_09_01,original,assemble bacterial genome from ONT reads in quiet mode
canu,canu_09,canu_09_02,beginner,How do I assemble bacterial genome from ONT reads in quiet mode?
canu,canu_09,canu_09_03,student,I need to assemble bacterial genome from ONT reads in quiet mode
canu,canu_09,canu_09_04,polite,Please assemble bacterial genome from ONT reads in quiet mode
canu,canu_09,canu_09_05,sysadmin,Use canu to assemble bacterial genome from ONT reads in quiet mode
canu,canu_09,canu_09_06,goal_oriented,I want to assemble bacterial genome from ONT reads in quiet mode
canu,canu_09,canu_09_07,expert,assemble bacterial genome ONT reads quiet mode
canu,canu_09,canu_09_08,detailed,"I have data that I need to process: assemble bacterial genome from ONT reads in quiet mode, utilizing multiple CPU threads for speed"
canu,canu_09,canu_09_09,informal,"Hey, can you help me assemble bacterial genome from ONT reads in quiet mode?"
canu,canu_09,canu_09_10,alternative,Perform: assemble bacterial genome from ONT reads in quiet mode
canu,canu_10,canu_10_01,original,assemble genome from PacBio HiFi reads with default parameters
canu,canu_10,canu_10_02,beginner,How do I assemble genome from PacBio HiFi reads with default parameters?
canu,canu_10,canu_10_03,student,I need to assemble genome from PacBio HiFi reads with default parameters
canu,canu_10,canu_10_04,polite,Please assemble genome from PacBio HiFi reads with default parameters
canu,canu_10,canu_10_05,sysadmin,Use canu to assemble genome from PacBio HiFi reads with default parameters
canu,canu_10,canu_10_06,goal_oriented,I want to assemble genome from PacBio HiFi reads with default parameters
canu,canu_10,canu_10_07,expert,assemble genome PacBio HiFi reads default parameters
canu,canu_10,canu_10_08,detailed,"I have data that I need to process: assemble genome from PacBio HiFi reads with default parameters, utilizing multiple CPU threads for speed"
canu,canu_10,canu_10_09,informal,"Hey, can you help me assemble genome from PacBio HiFi reads with default parameters?"
canu,canu_10,canu_10_10,alternative,"With default parameters, assemble genome from PacBio HiFi reads"
cellsnp-lite,cellsnp-lite_01,cellsnp-lite_01_01,original,pileup known SNPs in a 10x Chromium scRNA-seq BAM with cell barcodes
cellsnp-lite,cellsnp-lite_01,cellsnp-lite_01_02,beginner,How do I pileup known SNPs in a 10x Chromium scRNA-seq BAM with cell barcodes?
cellsnp-lite,cellsnp-lite_01,cellsnp-lite_01_03,student,I need to pileup known SNPs in a 10x Chromium scRNA-seq BAM with cell barcodes
cellsnp-lite,cellsnp-lite_01,cellsnp-lite_01_04,polite,Please pileup known SNPs in a 10x Chromium scRNA-seq BAM with cell barcodes
cellsnp-lite,cellsnp-lite_01,cellsnp-lite_01_05,sysadmin,Use cellsnp-lite to pileup known SNPs in a 10x Chromium scRNA-seq BAM with cell barcodes
cellsnp-lite,cellsnp-lite_01,cellsnp-lite_01_06,goal_oriented,I want to pileup known SNPs in a 10x Chromium scRNA-seq BAM with cell barcodes
cellsnp-lite,cellsnp-lite_01,cellsnp-lite_01_07,expert,pileup known SNPs 10x Chromium scRNA-seq BAM cell barcodes
cellsnp-lite,cellsnp-lite_01,cellsnp-lite_01_08,detailed,"I have data that I need to process: pileup known SNPs in a 10x Chromium scRNA-seq BAM with cell barcodes, utilizing multiple CPU threads for speed"
cellsnp-lite,cellsnp-lite_01,cellsnp-lite_01_09,informal,"Hey, can you help me pileup known SNPs in a 10x Chromium scRNA-seq BAM with cell barcodes?"
cellsnp-lite,cellsnp-lite_01,cellsnp-lite_01_10,alternative,"With cell barcodes, pileup known SNPs in a 10x Chromium scRNA-seq BAM"
cellsnp-lite,cellsnp-lite_02,cellsnp-lite_02_01,original,pileup SNPs in a bulk BAM without cell barcodes
cellsnp-lite,cellsnp-lite_02,cellsnp-lite_02_02,beginner,How do I pileup SNPs in a bulk BAM without cell barcodes?
cellsnp-lite,cellsnp-lite_02,cellsnp-lite_02_03,student,I need to pileup SNPs in a bulk BAM without cell barcodes
cellsnp-lite,cellsnp-lite_02,cellsnp-lite_02_04,polite,Please pileup SNPs in a bulk BAM without cell barcodes
cellsnp-lite,cellsnp-lite_02,cellsnp-lite_02_05,sysadmin,Use cellsnp-lite to pileup SNPs in a bulk BAM without cell barcodes
cellsnp-lite,cellsnp-lite_02,cellsnp-lite_02_06,goal_oriented,I want to pileup SNPs in a bulk BAM without cell barcodes
cellsnp-lite,cellsnp-lite_02,cellsnp-lite_02_07,expert,pileup SNPs bulk BAM without cell barcodes
cellsnp-lite,cellsnp-lite_02,cellsnp-lite_02_08,detailed,"I have data that I need to process: pileup SNPs in a bulk BAM without cell barcodes, utilizing multiple CPU threads for speed"
cellsnp-lite,cellsnp-lite_02,cellsnp-lite_02_09,informal,"Hey, can you help me pileup SNPs in a bulk BAM without cell barcodes?"
cellsnp-lite,cellsnp-lite_02,cellsnp-lite_02_10,alternative,Perform: pileup SNPs in a bulk BAM without cell barcodes
cellsnp-lite,cellsnp-lite_03,cellsnp-lite_03_01,original,de novo SNP discovery in single-cell BAM (Mode 2)
cellsnp-lite,cellsnp-lite_03,cellsnp-lite_03_02,beginner,How do I de novo SNP discovery in single-cell BAM (Mode 2)?
cellsnp-lite,cellsnp-lite_03,cellsnp-lite_03_03,student,I need to de novo SNP discovery in single-cell BAM (Mode 2)
cellsnp-lite,cellsnp-lite_03,cellsnp-lite_03_04,polite,Please de novo SNP discovery in single-cell BAM (Mode 2)
cellsnp-lite,cellsnp-lite_03,cellsnp-lite_03_05,sysadmin,Use cellsnp-lite to de novo SNP discovery in single-cell BAM (Mode 2)
cellsnp-lite,cellsnp-lite_03,cellsnp-lite_03_06,goal_oriented,I want to de novo SNP discovery in single-cell BAM (Mode 2)
cellsnp-lite,cellsnp-lite_03,cellsnp-lite_03_07,expert,de novo SNP discovery single-cell BAM (Mode 2)
cellsnp-lite,cellsnp-lite_03,cellsnp-lite_03_08,detailed,"I have data that I need to process: de novo SNP discovery in single-cell BAM (Mode 2), utilizing multiple CPU threads for speed"
cellsnp-lite,cellsnp-lite_03,cellsnp-lite_03_09,informal,"Hey, can you help me de novo SNP discovery in single-cell BAM (Mode 2)?"
cellsnp-lite,cellsnp-lite_03,cellsnp-lite_03_10,alternative,Perform: de novo SNP discovery in single-cell BAM (Mode 2)
cellsnp-lite,cellsnp-lite_04,cellsnp-lite_04_01,original,pileup multiple BAMs from different samples at shared SNP positions
cellsnp-lite,cellsnp-lite_04,cellsnp-lite_04_02,beginner,How do I pileup multiple BAMs from different samples at shared SNP positions?
cellsnp-lite,cellsnp-lite_04,cellsnp-lite_04_03,student,I need to pileup multiple BAMs from different samples at shared SNP positions
cellsnp-lite,cellsnp-lite_04,cellsnp-lite_04_04,polite,Please pileup multiple BAMs from different samples at shared SNP positions
cellsnp-lite,cellsnp-lite_04,cellsnp-lite_04_05,sysadmin,Use cellsnp-lite to pileup multiple BAMs from different samples at shared SNP positions
cellsnp-lite,cellsnp-lite_04,cellsnp-lite_04_06,goal_oriented,I want to pileup multiple BAMs from different samples at shared SNP positions
cellsnp-lite,cellsnp-lite_04,cellsnp-lite_04_07,expert,pileup multiple BAMs different samples at shared SNP positions
cellsnp-lite,cellsnp-lite_04,cellsnp-lite_04_08,detailed,"I have data that I need to process: pileup multiple BAMs from different samples at shared SNP positions, utilizing multiple CPU threads for speed"
cellsnp-lite,cellsnp-lite_04,cellsnp-lite_04_09,informal,"Hey, can you help me pileup multiple BAMs from different samples at shared SNP positions?"
cellsnp-lite,cellsnp-lite_04,cellsnp-lite_04_10,alternative,Perform: pileup multiple BAMs from different samples at shared SNP positions
cellsnp-lite,cellsnp-lite_05,cellsnp-lite_05_01,original,restrict pileup to specific chromosomes to reduce runtime
cellsnp-lite,cellsnp-lite_05,cellsnp-lite_05_02,beginner,How do I restrict pileup to specific chromosomes to reduce runtime?
cellsnp-lite,cellsnp-lite_05,cellsnp-lite_05_03,student,I need to restrict pileup to specific chromosomes to reduce runtime
cellsnp-lite,cellsnp-lite_05,cellsnp-lite_05_04,polite,Please restrict pileup to specific chromosomes to reduce runtime
cellsnp-lite,cellsnp-lite_05,cellsnp-lite_05_05,sysadmin,Use cellsnp-lite to restrict pileup to specific chromosomes to reduce runtime
cellsnp-lite,cellsnp-lite_05,cellsnp-lite_05_06,goal_oriented,I want to restrict pileup to specific chromosomes to reduce runtime
cellsnp-lite,cellsnp-lite_05,cellsnp-lite_05_07,expert,restrict pileup specific chromosomes reduce runtime
cellsnp-lite,cellsnp-lite_05,cellsnp-lite_05_08,detailed,"I have data that I need to process: restrict pileup to specific chromosomes to reduce runtime, utilizing multiple CPU threads for speed"
cellsnp-lite,cellsnp-lite_05,cellsnp-lite_05_09,informal,"Hey, can you help me restrict pileup to specific chromosomes to reduce runtime?"
cellsnp-lite,cellsnp-lite_05,cellsnp-lite_05_10,alternative,Output specific chromosomes to reduce runtime by performing: restrict pileup
cellsnp-lite,cellsnp-lite_06,cellsnp-lite_06_01,original,pileup with strict base quality filter for high-confidence allele counts
cellsnp-lite,cellsnp-lite_06,cellsnp-lite_06_02,beginner,How do I pileup with strict base quality filter for high-confidence allele counts?
cellsnp-lite,cellsnp-lite_06,cellsnp-lite_06_03,student,I need to pileup with strict base quality filter for high-confidence allele counts
cellsnp-lite,cellsnp-lite_06,cellsnp-lite_06_04,polite,Please pileup with strict base quality filter for high-confidence allele counts
cellsnp-lite,cellsnp-lite_06,cellsnp-lite_06_05,sysadmin,Use cellsnp-lite to pileup with strict base quality filter for high-confidence allele counts
cellsnp-lite,cellsnp-lite_06,cellsnp-lite_06_06,goal_oriented,I want to pileup with strict base quality filter for high-confidence allele counts
cellsnp-lite,cellsnp-lite_06,cellsnp-lite_06_07,expert,pileup strict base quality filter high-confidence allele counts
cellsnp-lite,cellsnp-lite_06,cellsnp-lite_06_08,detailed,"I have data that I need to process: pileup with strict base quality filter for high-confidence allele counts, utilizing multiple CPU threads for speed"
cellsnp-lite,cellsnp-lite_06,cellsnp-lite_06_09,informal,"Hey, can you help me pileup with strict base quality filter for high-confidence allele counts?"
cellsnp-lite,cellsnp-lite_06,cellsnp-lite_06_10,alternative,"With strict base quality filter for high-confidence allele counts, pileup"
cellsnp-lite,cellsnp-lite_07,cellsnp-lite_07_01,original,pileup known SNPs in a 10x Chromium scRNA-seq BAM with cell barcodes using multiple threads
cellsnp-lite,cellsnp-lite_07,cellsnp-lite_07_02,beginner,How do I pileup known SNPs in a 10x Chromium scRNA-seq BAM with cell barcodes using multiple threads?
cellsnp-lite,cellsnp-lite_07,cellsnp-lite_07_03,student,I need to pileup known SNPs in a 10x Chromium scRNA-seq BAM with cell barcodes using multiple threads
cellsnp-lite,cellsnp-lite_07,cellsnp-lite_07_04,polite,Please pileup known SNPs in a 10x Chromium scRNA-seq BAM with cell barcodes using multiple threads
cellsnp-lite,cellsnp-lite_07,cellsnp-lite_07_05,sysadmin,Use cellsnp-lite to pileup known SNPs in a 10x Chromium scRNA-seq BAM with cell barcodes using multiple threads
cellsnp-lite,cellsnp-lite_07,cellsnp-lite_07_06,goal_oriented,I want to pileup known SNPs in a 10x Chromium scRNA-seq BAM with cell barcodes using multiple threads
cellsnp-lite,cellsnp-lite_07,cellsnp-lite_07_07,expert,pileup known SNPs 10x Chromium scRNA-seq BAM cell barcodes multiple threads
cellsnp-lite,cellsnp-lite_07,cellsnp-lite_07_08,detailed,"I have data that I need to process: pileup known SNPs in a 10x Chromium scRNA-seq BAM with cell barcodes using multiple threads, utilizing multiple CPU threads for speed"
cellsnp-lite,cellsnp-lite_07,cellsnp-lite_07_09,informal,"Hey, can you help me pileup known SNPs in a 10x Chromium scRNA-seq BAM with cell barcodes using multiple threads?"
cellsnp-lite,cellsnp-lite_07,cellsnp-lite_07_10,alternative,"With cell barcodes using multiple threads, pileup known SNPs in a 10x Chromium scRNA-seq BAM"
cellsnp-lite,cellsnp-lite_08,cellsnp-lite_08_01,original,pileup SNPs in a bulk BAM without cell barcodes and write output to a file
cellsnp-lite,cellsnp-lite_08,cellsnp-lite_08_02,beginner,How do I pileup SNPs in a bulk BAM without cell barcodes and write output to a file?
cellsnp-lite,cellsnp-lite_08,cellsnp-lite_08_03,student,I need to pileup SNPs in a bulk BAM without cell barcodes and write output to a file
cellsnp-lite,cellsnp-lite_08,cellsnp-lite_08_04,polite,Please pileup SNPs in a bulk BAM without cell barcodes and write output to a file
cellsnp-lite,cellsnp-lite_08,cellsnp-lite_08_05,sysadmin,Use cellsnp-lite to pileup SNPs in a bulk BAM without cell barcodes and write output to a file
cellsnp-lite,cellsnp-lite_08,cellsnp-lite_08_06,goal_oriented,I want to pileup SNPs in a bulk BAM without cell barcodes and write output to a file
cellsnp-lite,cellsnp-lite_08,cellsnp-lite_08_07,expert,pileup SNPs bulk BAM without cell barcodes write output file
cellsnp-lite,cellsnp-lite_08,cellsnp-lite_08_08,detailed,"I have data that I need to process: pileup SNPs in a bulk BAM without cell barcodes and write output to a file, utilizing multiple CPU threads for speed, saving the result to a specified output file"
cellsnp-lite,cellsnp-lite_08,cellsnp-lite_08_09,informal,"Hey, can you help me pileup SNPs in a bulk BAM without cell barcodes and write output to a file?"
cellsnp-lite,cellsnp-lite_08,cellsnp-lite_08_10,alternative,Write output to a file after pileup SNPs in a bulk BAM without cell barcodes
cellsnp-lite,cellsnp-lite_09,cellsnp-lite_09_01,original,de novo SNP discovery in single-cell BAM (Mode 2) in quiet mode
cellsnp-lite,cellsnp-lite_09,cellsnp-lite_09_02,beginner,How do I de novo SNP discovery in single-cell BAM (Mode 2) in quiet mode?
cellsnp-lite,cellsnp-lite_09,cellsnp-lite_09_03,student,I need to de novo SNP discovery in single-cell BAM (Mode 2) in quiet mode
cellsnp-lite,cellsnp-lite_09,cellsnp-lite_09_04,polite,Please de novo SNP discovery in single-cell BAM (Mode 2) in quiet mode
cellsnp-lite,cellsnp-lite_09,cellsnp-lite_09_05,sysadmin,Use cellsnp-lite to de novo SNP discovery in single-cell BAM (Mode 2) in quiet mode
cellsnp-lite,cellsnp-lite_09,cellsnp-lite_09_06,goal_oriented,I want to de novo SNP discovery in single-cell BAM (Mode 2) in quiet mode
cellsnp-lite,cellsnp-lite_09,cellsnp-lite_09_07,expert,de novo SNP discovery single-cell BAM (Mode 2) quiet mode
cellsnp-lite,cellsnp-lite_09,cellsnp-lite_09_08,detailed,"I have data that I need to process: de novo SNP discovery in single-cell BAM (Mode 2) in quiet mode, utilizing multiple CPU threads for speed"
cellsnp-lite,cellsnp-lite_09,cellsnp-lite_09_09,informal,"Hey, can you help me de novo SNP discovery in single-cell BAM (Mode 2) in quiet mode?"
cellsnp-lite,cellsnp-lite_09,cellsnp-lite_09_10,alternative,Perform: de novo SNP discovery in single-cell BAM (Mode 2) in quiet mode
cellsnp-lite,cellsnp-lite_10,cellsnp-lite_10_01,original,pileup multiple BAMs from different samples at shared SNP positions with default parameters
cellsnp-lite,cellsnp-lite_10,cellsnp-lite_10_02,beginner,How do I pileup multiple BAMs from different samples at shared SNP positions with default parameters?
cellsnp-lite,cellsnp-lite_10,cellsnp-lite_10_03,student,I need to pileup multiple BAMs from different samples at shared SNP positions with default parameters
cellsnp-lite,cellsnp-lite_10,cellsnp-lite_10_04,polite,Please pileup multiple BAMs from different samples at shared SNP positions with default parameters
cellsnp-lite,cellsnp-lite_10,cellsnp-lite_10_05,sysadmin,Use cellsnp-lite to pileup multiple BAMs from different samples at shared SNP positions with default parameters
cellsnp-lite,cellsnp-lite_10,cellsnp-lite_10_06,goal_oriented,I want to pileup multiple BAMs from different samples at shared SNP positions with default parameters
cellsnp-lite,cellsnp-lite_10,cellsnp-lite_10_07,expert,pileup multiple BAMs different samples at shared SNP positions default parameters
cellsnp-lite,cellsnp-lite_10,cellsnp-lite_10_08,detailed,"I have data that I need to process: pileup multiple BAMs from different samples at shared SNP positions with default parameters, utilizing multiple CPU threads for speed"
cellsnp-lite,cellsnp-lite_10,cellsnp-lite_10_09,informal,"Hey, can you help me pileup multiple BAMs from different samples at shared SNP positions with default parameters?"
cellsnp-lite,cellsnp-lite_10,cellsnp-lite_10_10,alternative,"With default parameters, pileup multiple BAMs from different samples at shared SNP positions"
centrifuge,centrifuge_01,centrifuge_01_01,original,classify paired-end reads against a pre-built bacterial/viral database
centrifuge,centrifuge_01,centrifuge_01_02,beginner,How do I classify paired-end reads against a pre-built bacterial/viral database?
centrifuge,centrifuge_01,centrifuge_01_03,student,I need to classify paired-end reads against a pre-built bacterial/viral database
centrifuge,centrifuge_01,centrifuge_01_04,polite,Please classify paired-end reads against a pre-built bacterial/viral database
centrifuge,centrifuge_01,centrifuge_01_05,sysadmin,Use centrifuge to classify paired-end reads against a pre-built bacterial/viral database
centrifuge,centrifuge_01,centrifuge_01_06,goal_oriented,I want to classify paired-end reads against a pre-built bacterial/viral database
centrifuge,centrifuge_01,centrifuge_01_07,expert,classify paired-end reads against pre-built bacterial/viral database
centrifuge,centrifuge_01,centrifuge_01_08,detailed,"I have data that I need to process: classify paired-end reads against a pre-built bacterial/viral database, utilizing multiple CPU threads for speed"
centrifuge,centrifuge_01,centrifuge_01_09,informal,"Hey, can you help me classify paired-end reads against a pre-built bacterial/viral database?"
centrifuge,centrifuge_01,centrifuge_01_10,alternative,Perform: classify paired-end reads against a pre-built bacterial/viral database
centrifuge,centrifuge_02,centrifuge_02_01,original,classify single-end reads against the NT database
centrifuge,centrifuge_02,centrifuge_02_02,beginner,How do I classify single-end reads against the NT database?
centrifuge,centrifuge_02,centrifuge_02_03,student,I need to classify single-end reads against the NT database
centrifuge,centrifuge_02,centrifuge_02_04,polite,Please classify single-end reads against the NT database
centrifuge,centrifuge_02,centrifuge_02_05,sysadmin,Use centrifuge to classify single-end reads against the NT database
centrifuge,centrifuge_02,centrifuge_02_06,goal_oriented,I want to classify single-end reads against the NT database
centrifuge,centrifuge_02,centrifuge_02_07,expert,classify single-end reads against NT database
centrifuge,centrifuge_02,centrifuge_02_08,detailed,"I have data that I need to process: classify single-end reads against the NT database, utilizing multiple CPU threads for speed"
centrifuge,centrifuge_02,centrifuge_02_09,informal,"Hey, can you help me classify single-end reads against the NT database?"
centrifuge,centrifuge_02,centrifuge_02_10,alternative,Perform: classify single-end reads against the NT database
centrifuge,centrifuge_03,centrifuge_03_01,original,build a custom centrifuge index from bacterial reference genomes
centrifuge,centrifuge_03,centrifuge_03_02,beginner,How do I build a custom centrifuge index from bacterial reference genomes?
centrifuge,centrifuge_03,centrifuge_03_03,student,I need to build a custom centrifuge index from bacterial reference genomes
centrifuge,centrifuge_03,centrifuge_03_04,polite,Please build a custom centrifuge index from bacterial reference genomes
centrifuge,centrifuge_03,centrifuge_03_05,sysadmin,Use centrifuge to build a custom centrifuge index from bacterial reference genomes
centrifuge,centrifuge_03,centrifuge_03_06,goal_oriented,I want to build a custom centrifuge index from bacterial reference genomes
centrifuge,centrifuge_03,centrifuge_03_07,expert,build custom centrifuge index bacterial reference genomes
centrifuge,centrifuge_03,centrifuge_03_08,detailed,"I have data that I need to process: build a custom centrifuge index from bacterial reference genomes, utilizing multiple CPU threads for speed"
centrifuge,centrifuge_03,centrifuge_03_09,informal,"Hey, can you help me build a custom centrifuge index from bacterial reference genomes?"
centrifuge,centrifuge_03,centrifuge_03_10,alternative,Perform: build a custom centrifuge index from bacterial reference genomes
centrifuge,centrifuge_04,centrifuge_04_01,original,classify reads with increased sensitivity for viral detection
centrifuge,centrifuge_04,centrifuge_04_02,beginner,How do I classify reads with increased sensitivity for viral detection?
centrifuge,centrifuge_04,centrifuge_04_03,student,I need to classify reads with increased sensitivity for viral detection
centrifuge,centrifuge_04,centrifuge_04_04,polite,Please classify reads with increased sensitivity for viral detection
centrifuge,centrifuge_04,centrifuge_04_05,sysadmin,Use centrifuge to classify reads with increased sensitivity for viral detection
centrifuge,centrifuge_04,centrifuge_04_06,goal_oriented,I want to classify reads with increased sensitivity for viral detection
centrifuge,centrifuge_04,centrifuge_04_07,expert,classify reads increased sensitivity viral detection
centrifuge,centrifuge_04,centrifuge_04_08,detailed,"I have data that I need to process: classify reads with increased sensitivity for viral detection, utilizing multiple CPU threads for speed"
centrifuge,centrifuge_04,centrifuge_04_09,informal,"Hey, can you help me classify reads with increased sensitivity for viral detection?"
centrifuge,centrifuge_04,centrifuge_04_10,alternative,"With increased sensitivity for viral detection, classify reads"
centrifuge,centrifuge_05,centrifuge_05_01,original,convert centrifuge output to Kraken-style report for Pavian/Krona
centrifuge,centrifuge_05,centrifuge_05_02,beginner,How do I convert centrifuge output to Kraken-style report for Pavian/Krona?
centrifuge,centrifuge_05,centrifuge_05_03,student,I need to convert centrifuge output to Kraken-style report for Pavian/Krona
centrifuge,centrifuge_05,centrifuge_05_04,polite,Please convert centrifuge output to Kraken-style report for Pavian/Krona
centrifuge,centrifuge_05,centrifuge_05_05,sysadmin,Use centrifuge to convert centrifuge output to Kraken-style report for Pavian/Krona
centrifuge,centrifuge_05,centrifuge_05_06,goal_oriented,I want to convert centrifuge output to Kraken-style report for Pavian/Krona
centrifuge,centrifuge_05,centrifuge_05_07,expert,convert centrifuge output Kraken-style report Pavian/Krona
centrifuge,centrifuge_05,centrifuge_05_08,detailed,I have data that I need to process: convert centrifuge output to Kraken-style report for Pavian/Krona
centrifuge,centrifuge_05,centrifuge_05_09,informal,"Hey, can you help me convert centrifuge output to Kraken-style report for Pavian/Krona?"
centrifuge,centrifuge_05,centrifuge_05_10,alternative,Output Kraken-style report for Pavian/Krona by performing: convert centrifuge output
centrifuge,centrifuge_06,centrifuge_06_01,original,remove human reads by classifying against human genome and excluding matches
centrifuge,centrifuge_06,centrifuge_06_02,beginner,How do I remove human reads by classifying against human genome and excluding matches?
centrifuge,centrifuge_06,centrifuge_06_03,student,I need to remove human reads by classifying against human genome and excluding matches
centrifuge,centrifuge_06,centrifuge_06_04,polite,Please remove human reads by classifying against human genome and excluding matches
centrifuge,centrifuge_06,centrifuge_06_05,sysadmin,Use centrifuge to remove human reads by classifying against human genome and excluding matches
centrifuge,centrifuge_06,centrifuge_06_06,goal_oriented,I want to remove human reads by classifying against human genome and excluding matches
centrifuge,centrifuge_06,centrifuge_06_07,expert,remove human reads by classifying against human genome excluding matches
centrifuge,centrifuge_06,centrifuge_06_08,detailed,"I have data that I need to process: remove human reads by classifying against human genome and excluding matches, utilizing multiple CPU threads for speed"
centrifuge,centrifuge_06,centrifuge_06_09,informal,"Hey, can you help me remove human reads by classifying against human genome and excluding matches?"
centrifuge,centrifuge_06,centrifuge_06_10,alternative,Excluding matches after remove human reads by classifying against human genome
centrifuge,centrifuge_07,centrifuge_07_01,original,build centrifuge index from viral reference sequences
centrifuge,centrifuge_07,centrifuge_07_02,beginner,How do I build centrifuge index from viral reference sequences?
centrifuge,centrifuge_07,centrifuge_07_03,student,I need to build centrifuge index from viral reference sequences
centrifuge,centrifuge_07,centrifuge_07_04,polite,Please build centrifuge index from viral reference sequences
centrifuge,centrifuge_07,centrifuge_07_05,sysadmin,Use centrifuge to build centrifuge index from viral reference sequences
centrifuge,centrifuge_07,centrifuge_07_06,goal_oriented,I want to build centrifuge index from viral reference sequences
centrifuge,centrifuge_07,centrifuge_07_07,expert,build centrifuge index viral reference sequences
centrifuge,centrifuge_07,centrifuge_07_08,detailed,"I have data that I need to process: build centrifuge index from viral reference sequences, utilizing multiple CPU threads for speed"
centrifuge,centrifuge_07,centrifuge_07_09,informal,"Hey, can you help me build centrifuge index from viral reference sequences?"
centrifuge,centrifuge_07,centrifuge_07_10,alternative,Perform: build centrifuge index from viral reference sequences
centrifuge,centrifuge_08,centrifuge_08_01,original,classify reads and save unclassified reads for downstream assembly
centrifuge,centrifuge_08,centrifuge_08_02,beginner,How do I classify reads and save unclassified reads for downstream assembly?
centrifuge,centrifuge_08,centrifuge_08_03,student,I need to classify reads and save unclassified reads for downstream assembly
centrifuge,centrifuge_08,centrifuge_08_04,polite,Please classify reads and save unclassified reads for downstream assembly
centrifuge,centrifuge_08,centrifuge_08_05,sysadmin,Use centrifuge to classify reads and save unclassified reads for downstream assembly
centrifuge,centrifuge_08,centrifuge_08_06,goal_oriented,I want to classify reads and save unclassified reads for downstream assembly
centrifuge,centrifuge_08,centrifuge_08_07,expert,classify reads save unclassified reads downstream assembly
centrifuge,centrifuge_08,centrifuge_08_08,detailed,"I have data that I need to process: classify reads and save unclassified reads for downstream assembly, utilizing multiple CPU threads for speed"
centrifuge,centrifuge_08,centrifuge_08_09,informal,"Hey, can you help me classify reads and save unclassified reads for downstream assembly?"
centrifuge,centrifuge_08,centrifuge_08_10,alternative,Save unclassified reads for downstream assembly after classify reads
centrifuge,centrifuge_09,centrifuge_09_01,original,use high minimum hit length for precision metagenomic classification
centrifuge,centrifuge_09,centrifuge_09_02,beginner,How do I use high minimum hit length for precision metagenomic classification?
centrifuge,centrifuge_09,centrifuge_09_03,student,I need to use high minimum hit length for precision metagenomic classification
centrifuge,centrifuge_09,centrifuge_09_04,polite,Please use high minimum hit length for precision metagenomic classification
centrifuge,centrifuge_09,centrifuge_09_05,sysadmin,Use centrifuge to use high minimum hit length for precision metagenomic classification
centrifuge,centrifuge_09,centrifuge_09_06,goal_oriented,I want to use high minimum hit length for precision metagenomic classification
centrifuge,centrifuge_09,centrifuge_09_07,expert,use high minimum hit length precision metagenomic classification
centrifuge,centrifuge_09,centrifuge_09_08,detailed,"I have data that I need to process: use high minimum hit length for precision metagenomic classification, utilizing multiple CPU threads for speed"
centrifuge,centrifuge_09,centrifuge_09_09,informal,"Hey, can you help me use high minimum hit length for precision metagenomic classification?"
centrifuge,centrifuge_09,centrifuge_09_10,alternative,Perform: use high minimum hit length for precision metagenomic classification
centrifuge,centrifuge_10,centrifuge_10_01,original,classify paired-end metagenome against custom host-depleted database
centrifuge,centrifuge_10,centrifuge_10_02,beginner,How do I classify paired-end metagenome against custom host-depleted database?
centrifuge,centrifuge_10,centrifuge_10_03,student,I need to classify paired-end metagenome against custom host-depleted database
centrifuge,centrifuge_10,centrifuge_10_04,polite,Please classify paired-end metagenome against custom host-depleted database
centrifuge,centrifuge_10,centrifuge_10_05,sysadmin,Use centrifuge to classify paired-end metagenome against custom host-depleted database
centrifuge,centrifuge_10,centrifuge_10_06,goal_oriented,I want to classify paired-end metagenome against custom host-depleted database
centrifuge,centrifuge_10,centrifuge_10_07,expert,classify paired-end metagenome against custom host-depleted database
centrifuge,centrifuge_10,centrifuge_10_08,detailed,"I have data that I need to process: classify paired-end metagenome against custom host-depleted database, utilizing multiple CPU threads for speed"
centrifuge,centrifuge_10,centrifuge_10_09,informal,"Hey, can you help me classify paired-end metagenome against custom host-depleted database?"
centrifuge,centrifuge_10,centrifuge_10_10,alternative,Perform: classify paired-end metagenome against custom host-depleted database
checkm2,checkm2_01,checkm2_01_01,original,assess quality of all MAG bins in a directory
checkm2,checkm2_01,checkm2_01_02,beginner,How do I assess quality of all MAG bins in a directory?
checkm2,checkm2_01,checkm2_01_03,student,I need to assess quality of all MAG bins in a directory
checkm2,checkm2_01,checkm2_01_04,polite,Please assess quality of all MAG bins in a directory
checkm2,checkm2_01,checkm2_01_05,sysadmin,Use checkm2 to assess quality of all MAG bins in a directory
checkm2,checkm2_01,checkm2_01_06,goal_oriented,I want to assess quality of all MAG bins in a directory
checkm2,checkm2_01,checkm2_01_07,expert,assess quality of all MAG bins directory
checkm2,checkm2_01,checkm2_01_08,detailed,"I have data that I need to process: assess quality of all MAG bins in a directory, utilizing multiple CPU threads for speed, saving the result to a specified output file"
checkm2,checkm2_01,checkm2_01_09,informal,"Hey, can you help me assess quality of all MAG bins in a directory?"
checkm2,checkm2_01,checkm2_01_10,alternative,Perform: assess quality of all MAG bins in a directory
checkm2,checkm2_02,checkm2_02_01,original,assess genome quality with custom database path
checkm2,checkm2_02,checkm2_02_02,beginner,How do I assess genome quality with custom database path?
checkm2,checkm2_02,checkm2_02_03,student,I need to assess genome quality with custom database path
checkm2,checkm2_02,checkm2_02_04,polite,Please assess genome quality with custom database path
checkm2,checkm2_02,checkm2_02_05,sysadmin,Use checkm2 to assess genome quality with custom database path
checkm2,checkm2_02,checkm2_02_06,goal_oriented,I want to assess genome quality with custom database path
checkm2,checkm2_02,checkm2_02_07,expert,assess genome quality custom database path
checkm2,checkm2_02,checkm2_02_08,detailed,"I have data that I need to process: assess genome quality with custom database path, utilizing multiple CPU threads for speed, saving the result to a specified output file"
checkm2,checkm2_02,checkm2_02_09,informal,"Hey, can you help me assess genome quality with custom database path?"
checkm2,checkm2_02,checkm2_02_10,alternative,"With custom database path, assess genome quality"
checkm2,checkm2_03,checkm2_03_01,original,assess quality and produce detailed outputs including protein predictions
checkm2,checkm2_03,checkm2_03_02,beginner,How do I assess quality and produce detailed outputs including protein predictions?
checkm2,checkm2_03,checkm2_03_03,student,I need to assess quality and produce detailed outputs including protein predictions
checkm2,checkm2_03,checkm2_03_04,polite,Please assess quality and produce detailed outputs including protein predictions
checkm2,checkm2_03,checkm2_03_05,sysadmin,Use checkm2 to assess quality and produce detailed outputs including protein predictions
checkm2,checkm2_03,checkm2_03_06,goal_oriented,I want to assess quality and produce detailed outputs including protein predictions
checkm2,checkm2_03,checkm2_03_07,expert,assess quality produce detailed outputs including protein predictions
checkm2,checkm2_03,checkm2_03_08,detailed,"I have data that I need to process: assess quality and produce detailed outputs including protein predictions, utilizing multiple CPU threads for speed, saving the result to a specified output file"
checkm2,checkm2_03,checkm2_03_09,informal,"Hey, can you help me assess quality and produce detailed outputs including protein predictions?"
checkm2,checkm2_03,checkm2_03_10,alternative,Produce detailed outputs including protein predictions after assess quality
checkm2,checkm2_04,checkm2_04_01,original,download the CheckM2 database
checkm2,checkm2_04,checkm2_04_02,beginner,How do I download the CheckM2 database?
checkm2,checkm2_04,checkm2_04_03,student,I need to download the CheckM2 database
checkm2,checkm2_04,checkm2_04_04,polite,Please download the CheckM2 database
checkm2,checkm2_04,checkm2_04_05,sysadmin,Use checkm2 to download the CheckM2 database
checkm2,checkm2_04,checkm2_04_06,goal_oriented,I want to download the CheckM2 database
checkm2,checkm2_04,checkm2_04_07,expert,download CheckM2 database
checkm2,checkm2_04,checkm2_04_08,detailed,I have data that I need to process: download the CheckM2 database
checkm2,checkm2_04,checkm2_04_09,informal,"Hey, can you help me download the CheckM2 database?"
checkm2,checkm2_04,checkm2_04_10,alternative,Perform: download the CheckM2 database
checkm2,checkm2_05,checkm2_05_01,original,assess quality of all MAG bins in a directory with default parameters
checkm2,checkm2_05,checkm2_05_02,beginner,How do I assess quality of all MAG bins in a directory with default parameters?
checkm2,checkm2_05,checkm2_05_03,student,I need to assess quality of all MAG bins in a directory with default parameters
checkm2,checkm2_05,checkm2_05_04,polite,Please assess quality of all MAG bins in a directory with default parameters
checkm2,checkm2_05,checkm2_05_05,sysadmin,Use checkm2 to assess quality of all MAG bins in a directory with default parameters
checkm2,checkm2_05,checkm2_05_06,goal_oriented,I want to assess quality of all MAG bins in a directory with default parameters
checkm2,checkm2_05,checkm2_05_07,expert,assess quality of all MAG bins directory default parameters
checkm2,checkm2_05,checkm2_05_08,detailed,"I have data that I need to process: assess quality of all MAG bins in a directory with default parameters, utilizing multiple CPU threads for speed, saving the result to a specified output file"
checkm2,checkm2_05,checkm2_05_09,informal,"Hey, can you help me assess quality of all MAG bins in a directory with default parameters?"
checkm2,checkm2_05,checkm2_05_10,alternative,"With default parameters, assess quality of all MAG bins in a directory"
checkm2,checkm2_06,checkm2_06_01,original,assess genome quality with custom database path with verbose output
checkm2,checkm2_06,checkm2_06_02,beginner,How do I assess genome quality with custom database path with verbose output?
checkm2,checkm2_06,checkm2_06_03,student,I need to assess genome quality with custom database path with verbose output
checkm2,checkm2_06,checkm2_06_04,polite,Please assess genome quality with custom database path with verbose output
checkm2,checkm2_06,checkm2_06_05,sysadmin,Use checkm2 to assess genome quality with custom database path with verbose output
checkm2,checkm2_06,checkm2_06_06,goal_oriented,I want to assess genome quality with custom database path with verbose output
checkm2,checkm2_06,checkm2_06_07,expert,assess genome quality custom database path verbose output
checkm2,checkm2_06,checkm2_06_08,detailed,"I have data that I need to process: assess genome quality with custom database path with verbose output, utilizing multiple CPU threads for speed, saving the result to a specified output file"
checkm2,checkm2_06,checkm2_06_09,informal,"Hey, can you help me assess genome quality with custom database path with verbose output?"
checkm2,checkm2_06,checkm2_06_10,alternative,"With custom database path with verbose output, assess genome quality"
checkm2,checkm2_07,checkm2_07_01,original,assess quality and produce detailed outputs including protein predictions using multiple threads
checkm2,checkm2_07,checkm2_07_02,beginner,How do I assess quality and produce detailed outputs including protein predictions using multiple threads?
checkm2,checkm2_07,checkm2_07_03,student,I need to assess quality and produce detailed outputs including protein predictions using multiple threads
checkm2,checkm2_07,checkm2_07_04,polite,Please assess quality and produce detailed outputs including protein predictions using multiple threads
checkm2,checkm2_07,checkm2_07_05,sysadmin,Use checkm2 to assess quality and produce detailed outputs including protein predictions using multiple threads
checkm2,checkm2_07,checkm2_07_06,goal_oriented,I want to assess quality and produce detailed outputs including protein predictions using multiple threads
checkm2,checkm2_07,checkm2_07_07,expert,assess quality produce detailed outputs including protein predictions multiple threads
checkm2,checkm2_07,checkm2_07_08,detailed,"I have data that I need to process: assess quality and produce detailed outputs including protein predictions using multiple threads, utilizing multiple CPU threads for speed, saving the result to a specified output file"
checkm2,checkm2_07,checkm2_07_09,informal,"Hey, can you help me assess quality and produce detailed outputs including protein predictions using multiple threads?"
checkm2,checkm2_07,checkm2_07_10,alternative,Produce detailed outputs including protein predictions using multiple threads after assess quality
checkm2,checkm2_08,checkm2_08_01,original,download the CheckM2 database and write output to a file
checkm2,checkm2_08,checkm2_08_02,beginner,How do I download the CheckM2 database and write output to a file?
checkm2,checkm2_08,checkm2_08_03,student,I need to download the CheckM2 database and write output to a file
checkm2,checkm2_08,checkm2_08_04,polite,Please download the CheckM2 database and write output to a file
checkm2,checkm2_08,checkm2_08_05,sysadmin,Use checkm2 to download the CheckM2 database and write output to a file
checkm2,checkm2_08,checkm2_08_06,goal_oriented,I want to download the CheckM2 database and write output to a file
checkm2,checkm2_08,checkm2_08_07,expert,download CheckM2 database write output file
checkm2,checkm2_08,checkm2_08_08,detailed,"I have data that I need to process: download the CheckM2 database and write output to a file, saving the result to a specified output file"
checkm2,checkm2_08,checkm2_08_09,informal,"Hey, can you help me download the CheckM2 database and write output to a file?"
checkm2,checkm2_08,checkm2_08_10,alternative,Write output to a file after download the CheckM2 database
checkm2,checkm2_09,checkm2_09_01,original,assess quality of all MAG bins in a directory in quiet mode
checkm2,checkm2_09,checkm2_09_02,beginner,How do I assess quality of all MAG bins in a directory in quiet mode?
checkm2,checkm2_09,checkm2_09_03,student,I need to assess quality of all MAG bins in a directory in quiet mode
checkm2,checkm2_09,checkm2_09_04,polite,Please assess quality of all MAG bins in a directory in quiet mode
checkm2,checkm2_09,checkm2_09_05,sysadmin,Use checkm2 to assess quality of all MAG bins in a directory in quiet mode
checkm2,checkm2_09,checkm2_09_06,goal_oriented,I want to assess quality of all MAG bins in a directory in quiet mode
checkm2,checkm2_09,checkm2_09_07,expert,assess quality of all MAG bins directory quiet mode
checkm2,checkm2_09,checkm2_09_08,detailed,"I have data that I need to process: assess quality of all MAG bins in a directory in quiet mode, utilizing multiple CPU threads for speed, saving the result to a specified output file"
checkm2,checkm2_09,checkm2_09_09,informal,"Hey, can you help me assess quality of all MAG bins in a directory in quiet mode?"
checkm2,checkm2_09,checkm2_09_10,alternative,Perform: assess quality of all MAG bins in a directory in quiet mode
checkm2,checkm2_10,checkm2_10_01,original,assess genome quality with custom database path with default parameters
checkm2,checkm2_10,checkm2_10_02,beginner,How do I assess genome quality with custom database path with default parameters?
checkm2,checkm2_10,checkm2_10_03,student,I need to assess genome quality with custom database path with default parameters
checkm2,checkm2_10,checkm2_10_04,polite,Please assess genome quality with custom database path with default parameters
checkm2,checkm2_10,checkm2_10_05,sysadmin,Use checkm2 to assess genome quality with custom database path with default parameters
checkm2,checkm2_10,checkm2_10_06,goal_oriented,I want to assess genome quality with custom database path with default parameters
checkm2,checkm2_10,checkm2_10_07,expert,assess genome quality custom database path default parameters
checkm2,checkm2_10,checkm2_10_08,detailed,"I have data that I need to process: assess genome quality with custom database path with default parameters, utilizing multiple CPU threads for speed, saving the result to a specified output file"
checkm2,checkm2_10,checkm2_10_09,informal,"Hey, can you help me assess genome quality with custom database path with default parameters?"
checkm2,checkm2_10,checkm2_10_10,alternative,"With custom database path with default parameters, assess genome quality"
chopper,chopper_01,chopper_01_01,original,filter ONT reads by minimum quality Q10 and minimum length 1000 bp
chopper,chopper_01,chopper_01_02,beginner,How do I filter ONT reads by minimum quality Q10 and minimum length 1000 bp?
chopper,chopper_01,chopper_01_03,student,I need to filter ONT reads by minimum quality Q10 and minimum length 1000 bp
chopper,chopper_01,chopper_01_04,polite,Please filter ONT reads by minimum quality Q10 and minimum length 1000 bp
chopper,chopper_01,chopper_01_05,sysadmin,Use chopper to filter ONT reads by minimum quality Q10 and minimum length 1000 bp
chopper,chopper_01,chopper_01_06,goal_oriented,I want to filter ONT reads by minimum quality Q10 and minimum length 1000 bp
chopper,chopper_01,chopper_01_07,expert,filter ONT reads by minimum quality Q10 minimum length 1000 bp
chopper,chopper_01,chopper_01_08,detailed,"I have data that I need to process: filter ONT reads by minimum quality Q10 and minimum length 1000 bp, utilizing multiple CPU threads for speed"
chopper,chopper_01,chopper_01_09,informal,"Hey, can you help me filter ONT reads by minimum quality Q10 and minimum length 1000 bp?"
chopper,chopper_01,chopper_01_10,alternative,Minimum length 1000 bp after filter ONT reads by minimum quality Q10
chopper,chopper_02,chopper_02_01,original,"filter high-quality ONT reads for variant calling (Q15, min 500 bp)"
chopper,chopper_02,chopper_02_02,beginner,"How do I filter high-quality ONT reads for variant calling (Q15, min 500 bp)?"
chopper,chopper_02,chopper_02_03,student,"I need to filter high-quality ONT reads for variant calling (Q15, min 500 bp)"
chopper,chopper_02,chopper_02_04,polite,"Please filter high-quality ONT reads for variant calling (Q15, min 500 bp)"
chopper,chopper_02,chopper_02_05,sysadmin,"Use chopper to filter high-quality ONT reads for variant calling (Q15, min 500 bp)"
chopper,chopper_02,chopper_02_06,goal_oriented,"I want to filter high-quality ONT reads for variant calling (Q15, min 500 bp)"
chopper,chopper_02,chopper_02_07,expert,"filter high-quality ONT reads variant calling (Q15, min 500 bp)"
chopper,chopper_02,chopper_02_08,detailed,"I have data that I need to process: filter high-quality ONT reads for variant calling (Q15, min 500 bp), utilizing multiple CPU threads for speed"
chopper,chopper_02,chopper_02_09,informal,"Hey, can you help me filter high-quality ONT reads for variant calling (Q15, min 500 bp)?"
chopper,chopper_02,chopper_02_10,alternative,"Perform: filter high-quality ONT reads for variant calling (Q15, min 500 bp)"
chopper,chopper_03,chopper_03_01,original,filter reads and remove low-quality ends
chopper,chopper_03,chopper_03_02,beginner,How do I filter reads and remove low-quality ends?
chopper,chopper_03,chopper_03_03,student,I need to filter reads and remove low-quality ends
chopper,chopper_03,chopper_03_04,polite,Please filter reads and remove low-quality ends
chopper,chopper_03,chopper_03_05,sysadmin,Use chopper to filter reads and remove low-quality ends
chopper,chopper_03,chopper_03_06,goal_oriented,I want to filter reads and remove low-quality ends
chopper,chopper_03,chopper_03_07,expert,filter reads remove low-quality ends
chopper,chopper_03,chopper_03_08,detailed,"I have data that I need to process: filter reads and remove low-quality ends, utilizing multiple CPU threads for speed"
chopper,chopper_03,chopper_03_09,informal,"Hey, can you help me filter reads and remove low-quality ends?"
chopper,chopper_03,chopper_03_10,alternative,Remove low-quality ends after filter reads
chopper,chopper_04,chopper_04_01,original,filter reads with maximum length cutoff for specific applications
chopper,chopper_04,chopper_04_02,beginner,How do I filter reads with maximum length cutoff for specific applications?
chopper,chopper_04,chopper_04_03,student,I need to filter reads with maximum length cutoff for specific applications
chopper,chopper_04,chopper_04_04,polite,Please filter reads with maximum length cutoff for specific applications
chopper,chopper_04,chopper_04_05,sysadmin,Use chopper to filter reads with maximum length cutoff for specific applications
chopper,chopper_04,chopper_04_06,goal_oriented,I want to filter reads with maximum length cutoff for specific applications
chopper,chopper_04,chopper_04_07,expert,filter reads maximum length cutoff specific applications
chopper,chopper_04,chopper_04_08,detailed,"I have data that I need to process: filter reads with maximum length cutoff for specific applications, utilizing multiple CPU threads for speed"
chopper,chopper_04,chopper_04_09,informal,"Hey, can you help me filter reads with maximum length cutoff for specific applications?"
chopper,chopper_04,chopper_04_10,alternative,"With maximum length cutoff for specific applications, filter reads"
chopper,chopper_05,chopper_05_01,original,filter ONT reads by minimum quality Q10 and minimum length 1000 bp with default parameters
chopper,chopper_05,chopper_05_02,beginner,How do I filter ONT reads by minimum quality Q10 and minimum length 1000 bp with default parameters?
chopper,chopper_05,chopper_05_03,student,I need to filter ONT reads by minimum quality Q10 and minimum length 1000 bp with default parameters
chopper,chopper_05,chopper_05_04,polite,Please filter ONT reads by minimum quality Q10 and minimum length 1000 bp with default parameters
chopper,chopper_05,chopper_05_05,sysadmin,Use chopper to filter ONT reads by minimum quality Q10 and minimum length 1000 bp with default parameters
chopper,chopper_05,chopper_05_06,goal_oriented,I want to filter ONT reads by minimum quality Q10 and minimum length 1000 bp with default parameters
chopper,chopper_05,chopper_05_07,expert,filter ONT reads by minimum quality Q10 minimum length 1000 bp default parameters
chopper,chopper_05,chopper_05_08,detailed,"I have data that I need to process: filter ONT reads by minimum quality Q10 and minimum length 1000 bp with default parameters, utilizing multiple CPU threads for speed"
chopper,chopper_05,chopper_05_09,informal,"Hey, can you help me filter ONT reads by minimum quality Q10 and minimum length 1000 bp with default parameters?"
chopper,chopper_05,chopper_05_10,alternative,Minimum length 1000 bp with default parameters after filter ONT reads by minimum quality Q10
chopper,chopper_06,chopper_06_01,original,"filter high-quality ONT reads for variant calling (Q15, min 500 bp) with verbose output"
chopper,chopper_06,chopper_06_02,beginner,"How do I filter high-quality ONT reads for variant calling (Q15, min 500 bp) with verbose output?"
chopper,chopper_06,chopper_06_03,student,"I need to filter high-quality ONT reads for variant calling (Q15, min 500 bp) with verbose output"
chopper,chopper_06,chopper_06_04,polite,"Please filter high-quality ONT reads for variant calling (Q15, min 500 bp) with verbose output"
chopper,chopper_06,chopper_06_05,sysadmin,"Use chopper to filter high-quality ONT reads for variant calling (Q15, min 500 bp) with verbose output"
chopper,chopper_06,chopper_06_06,goal_oriented,"I want to filter high-quality ONT reads for variant calling (Q15, min 500 bp) with verbose output"
chopper,chopper_06,chopper_06_07,expert,"filter high-quality ONT reads variant calling (Q15, min 500 bp) verbose output"
chopper,chopper_06,chopper_06_08,detailed,"I have data that I need to process: filter high-quality ONT reads for variant calling (Q15, min 500 bp) with verbose output, utilizing multiple CPU threads for speed"
chopper,chopper_06,chopper_06_09,informal,"Hey, can you help me filter high-quality ONT reads for variant calling (Q15, min 500 bp) with verbose output?"
chopper,chopper_06,chopper_06_10,alternative,"With verbose output, filter high-quality ONT reads for variant calling (Q15, min 500 bp)"
chopper,chopper_07,chopper_07_01,original,filter reads and remove low-quality ends using multiple threads
chopper,chopper_07,chopper_07_02,beginner,How do I filter reads and remove low-quality ends using multiple threads?
chopper,chopper_07,chopper_07_03,student,I need to filter reads and remove low-quality ends using multiple threads
chopper,chopper_07,chopper_07_04,polite,Please filter reads and remove low-quality ends using multiple threads
chopper,chopper_07,chopper_07_05,sysadmin,Use chopper to filter reads and remove low-quality ends using multiple threads
chopper,chopper_07,chopper_07_06,goal_oriented,I want to filter reads and remove low-quality ends using multiple threads
chopper,chopper_07,chopper_07_07,expert,filter reads remove low-quality ends multiple threads
chopper,chopper_07,chopper_07_08,detailed,"I have data that I need to process: filter reads and remove low-quality ends using multiple threads, utilizing multiple CPU threads for speed"
chopper,chopper_07,chopper_07_09,informal,"Hey, can you help me filter reads and remove low-quality ends using multiple threads?"
chopper,chopper_07,chopper_07_10,alternative,Remove low-quality ends using multiple threads after filter reads
chopper,chopper_08,chopper_08_01,original,filter reads with maximum length cutoff for specific applications and write output to a file
chopper,chopper_08,chopper_08_02,beginner,How do I filter reads with maximum length cutoff for specific applications and write output to a file?
chopper,chopper_08,chopper_08_03,student,I need to filter reads with maximum length cutoff for specific applications and write output to a file
chopper,chopper_08,chopper_08_04,polite,Please filter reads with maximum length cutoff for specific applications and write output to a file
chopper,chopper_08,chopper_08_05,sysadmin,Use chopper to filter reads with maximum length cutoff for specific applications and write output to a file
chopper,chopper_08,chopper_08_06,goal_oriented,I want to filter reads with maximum length cutoff for specific applications and write output to a file
chopper,chopper_08,chopper_08_07,expert,filter reads maximum length cutoff specific applications write output file
chopper,chopper_08,chopper_08_08,detailed,"I have data that I need to process: filter reads with maximum length cutoff for specific applications and write output to a file, utilizing multiple CPU threads for speed, saving the result to a specified output file"
chopper,chopper_08,chopper_08_09,informal,"Hey, can you help me filter reads with maximum length cutoff for specific applications and write output to a file?"
chopper,chopper_08,chopper_08_10,alternative,Write output to a file after filter reads with maximum length cutoff for specific applications
chopper,chopper_09,chopper_09_01,original,filter ONT reads by minimum quality Q10 and minimum length 1000 bp in quiet mode
chopper,chopper_09,chopper_09_02,beginner,How do I filter ONT reads by minimum quality Q10 and minimum length 1000 bp in quiet mode?
chopper,chopper_09,chopper_09_03,student,I need to filter ONT reads by minimum quality Q10 and minimum length 1000 bp in quiet mode
chopper,chopper_09,chopper_09_04,polite,Please filter ONT reads by minimum quality Q10 and minimum length 1000 bp in quiet mode
chopper,chopper_09,chopper_09_05,sysadmin,Use chopper to filter ONT reads by minimum quality Q10 and minimum length 1000 bp in quiet mode
chopper,chopper_09,chopper_09_06,goal_oriented,I want to filter ONT reads by minimum quality Q10 and minimum length 1000 bp in quiet mode
chopper,chopper_09,chopper_09_07,expert,filter ONT reads by minimum quality Q10 minimum length 1000 bp quiet mode
chopper,chopper_09,chopper_09_08,detailed,"I have data that I need to process: filter ONT reads by minimum quality Q10 and minimum length 1000 bp in quiet mode, utilizing multiple CPU threads for speed"
chopper,chopper_09,chopper_09_09,informal,"Hey, can you help me filter ONT reads by minimum quality Q10 and minimum length 1000 bp in quiet mode?"
chopper,chopper_09,chopper_09_10,alternative,Minimum length 1000 bp in quiet mode after filter ONT reads by minimum quality Q10
chopper,chopper_10,chopper_10_01,original,"filter high-quality ONT reads for variant calling (Q15, min 500 bp) with default parameters"
chopper,chopper_10,chopper_10_02,beginner,"How do I filter high-quality ONT reads for variant calling (Q15, min 500 bp) with default parameters?"
chopper,chopper_10,chopper_10_03,student,"I need to filter high-quality ONT reads for variant calling (Q15, min 500 bp) with default parameters"
chopper,chopper_10,chopper_10_04,polite,"Please filter high-quality ONT reads for variant calling (Q15, min 500 bp) with default parameters"
chopper,chopper_10,chopper_10_05,sysadmin,"Use chopper to filter high-quality ONT reads for variant calling (Q15, min 500 bp) with default parameters"
chopper,chopper_10,chopper_10_06,goal_oriented,"I want to filter high-quality ONT reads for variant calling (Q15, min 500 bp) with default parameters"
chopper,chopper_10,chopper_10_07,expert,"filter high-quality ONT reads variant calling (Q15, min 500 bp) default parameters"
chopper,chopper_10,chopper_10_08,detailed,"I have data that I need to process: filter high-quality ONT reads for variant calling (Q15, min 500 bp) with default parameters, utilizing multiple CPU threads for speed"
chopper,chopper_10,chopper_10_09,informal,"Hey, can you help me filter high-quality ONT reads for variant calling (Q15, min 500 bp) with default parameters?"
chopper,chopper_10,chopper_10_10,alternative,"With default parameters, filter high-quality ONT reads for variant calling (Q15, min 500 bp)"
chromap,chromap_01,chromap_01_01,original,build Chromap genome index
chromap,chromap_01,chromap_01_02,beginner,How do I build Chromap genome index?
chromap,chromap_01,chromap_01_03,student,I need to build Chromap genome index
chromap,chromap_01,chromap_01_04,polite,Please build Chromap genome index
chromap,chromap_01,chromap_01_05,sysadmin,Use chromap to build Chromap genome index
chromap,chromap_01,chromap_01_06,goal_oriented,I want to build Chromap genome index
chromap,chromap_01,chromap_01_07,expert,build Chromap genome index
chromap,chromap_01,chromap_01_08,detailed,"I have data that I need to process: build Chromap genome index, saving the result to a specified output file"
chromap,chromap_01,chromap_01_09,informal,"Hey, can you help me build Chromap genome index?"
chromap,chromap_01,chromap_01_10,alternative,Perform: build Chromap genome index
chromap,chromap_02,chromap_02_01,original,align paired-end ATAC-seq reads with Chromap
chromap,chromap_02,chromap_02_02,beginner,How do I align paired-end ATAC-seq reads with Chromap?
chromap,chromap_02,chromap_02_03,student,I need to align paired-end ATAC-seq reads with Chromap
chromap,chromap_02,chromap_02_04,polite,Please align paired-end ATAC-seq reads with Chromap
chromap,chromap_02,chromap_02_05,sysadmin,Use chromap to align paired-end ATAC-seq reads with Chromap
chromap,chromap_02,chromap_02_06,goal_oriented,I want to align paired-end ATAC-seq reads with Chromap
chromap,chromap_02,chromap_02_07,expert,align paired-end ATAC-seq reads Chromap
chromap,chromap_02,chromap_02_08,detailed,"I have data that I need to process: align paired-end ATAC-seq reads with Chromap, utilizing multiple CPU threads for speed, saving the result to a specified output file"
chromap,chromap_02,chromap_02_09,informal,"Hey, can you help me align paired-end ATAC-seq reads with Chromap?"
chromap,chromap_02,chromap_02_10,alternative,"With Chromap, align paired-end ATAC-seq reads"
chromap,chromap_03,chromap_03_01,original,process single-cell ATAC-seq with barcodes
chromap,chromap_03,chromap_03_02,beginner,How do I process single-cell ATAC-seq with barcodes?
chromap,chromap_03,chromap_03_03,student,I need to process single-cell ATAC-seq with barcodes
chromap,chromap_03,chromap_03_04,polite,Please process single-cell ATAC-seq with barcodes
chromap,chromap_03,chromap_03_05,sysadmin,Use chromap to process single-cell ATAC-seq with barcodes
chromap,chromap_03,chromap_03_06,goal_oriented,I want to process single-cell ATAC-seq with barcodes
chromap,chromap_03,chromap_03_07,expert,process single-cell ATAC-seq barcodes
chromap,chromap_03,chromap_03_08,detailed,"I have data that I need to process: process single-cell ATAC-seq with barcodes, utilizing multiple CPU threads for speed, saving the result to a specified output file"
chromap,chromap_03,chromap_03_09,informal,"Hey, can you help me process single-cell ATAC-seq with barcodes?"
chromap,chromap_03,chromap_03_10,alternative,"With barcodes, process single-cell ATAC-seq"
chromap,chromap_04,chromap_04_01,original,align ChIP-seq reads with Chromap
chromap,chromap_04,chromap_04_02,beginner,How do I align ChIP-seq reads with Chromap?
chromap,chromap_04,chromap_04_03,student,I need to align ChIP-seq reads with Chromap
chromap,chromap_04,chromap_04_04,polite,Please align ChIP-seq reads with Chromap
chromap,chromap_04,chromap_04_05,sysadmin,Use chromap to align ChIP-seq reads with Chromap
chromap,chromap_04,chromap_04_06,goal_oriented,I want to align ChIP-seq reads with Chromap
chromap,chromap_04,chromap_04_07,expert,align ChIP-seq reads Chromap
chromap,chromap_04,chromap_04_08,detailed,"I have data that I need to process: align ChIP-seq reads with Chromap, utilizing multiple CPU threads for speed, saving the result to a specified output file"
chromap,chromap_04,chromap_04_09,informal,"Hey, can you help me align ChIP-seq reads with Chromap?"
chromap,chromap_04,chromap_04_10,alternative,"With Chromap, align ChIP-seq reads"
chromap,chromap_05,chromap_05_01,original,build Chromap genome index with default parameters
chromap,chromap_05,chromap_05_02,beginner,How do I build Chromap genome index with default parameters?
chromap,chromap_05,chromap_05_03,student,I need to build Chromap genome index with default parameters
chromap,chromap_05,chromap_05_04,polite,Please build Chromap genome index with default parameters
chromap,chromap_05,chromap_05_05,sysadmin,Use chromap to build Chromap genome index with default parameters
chromap,chromap_05,chromap_05_06,goal_oriented,I want to build Chromap genome index with default parameters
chromap,chromap_05,chromap_05_07,expert,build Chromap genome index default parameters
chromap,chromap_05,chromap_05_08,detailed,"I have data that I need to process: build Chromap genome index with default parameters, saving the result to a specified output file"
chromap,chromap_05,chromap_05_09,informal,"Hey, can you help me build Chromap genome index with default parameters?"
chromap,chromap_05,chromap_05_10,alternative,"With default parameters, build Chromap genome index"
chromap,chromap_06,chromap_06_01,original,align paired-end ATAC-seq reads with Chromap with verbose output
chromap,chromap_06,chromap_06_02,beginner,How do I align paired-end ATAC-seq reads with Chromap with verbose output?
chromap,chromap_06,chromap_06_03,student,I need to align paired-end ATAC-seq reads with Chromap with verbose output
chromap,chromap_06,chromap_06_04,polite,Please align paired-end ATAC-seq reads with Chromap with verbose output
chromap,chromap_06,chromap_06_05,sysadmin,Use chromap to align paired-end ATAC-seq reads with Chromap with verbose output
chromap,chromap_06,chromap_06_06,goal_oriented,I want to align paired-end ATAC-seq reads with Chromap with verbose output
chromap,chromap_06,chromap_06_07,expert,align paired-end ATAC-seq reads Chromap verbose output
chromap,chromap_06,chromap_06_08,detailed,"I have data that I need to process: align paired-end ATAC-seq reads with Chromap with verbose output, utilizing multiple CPU threads for speed, saving the result to a specified output file"
chromap,chromap_06,chromap_06_09,informal,"Hey, can you help me align paired-end ATAC-seq reads with Chromap with verbose output?"
chromap,chromap_06,chromap_06_10,alternative,"With Chromap with verbose output, align paired-end ATAC-seq reads"
chromap,chromap_07,chromap_07_01,original,process single-cell ATAC-seq with barcodes using multiple threads
chromap,chromap_07,chromap_07_02,beginner,How do I process single-cell ATAC-seq with barcodes using multiple threads?
chromap,chromap_07,chromap_07_03,student,I need to process single-cell ATAC-seq with barcodes using multiple threads
chromap,chromap_07,chromap_07_04,polite,Please process single-cell ATAC-seq with barcodes using multiple threads
chromap,chromap_07,chromap_07_05,sysadmin,Use chromap to process single-cell ATAC-seq with barcodes using multiple threads
chromap,chromap_07,chromap_07_06,goal_oriented,I want to process single-cell ATAC-seq with barcodes using multiple threads
chromap,chromap_07,chromap_07_07,expert,process single-cell ATAC-seq barcodes multiple threads
chromap,chromap_07,chromap_07_08,detailed,"I have data that I need to process: process single-cell ATAC-seq with barcodes using multiple threads, utilizing multiple CPU threads for speed, saving the result to a specified output file"
chromap,chromap_07,chromap_07_09,informal,"Hey, can you help me process single-cell ATAC-seq with barcodes using multiple threads?"
chromap,chromap_07,chromap_07_10,alternative,"With barcodes using multiple threads, process single-cell ATAC-seq"
chromap,chromap_08,chromap_08_01,original,align ChIP-seq reads with Chromap and write output to a file
chromap,chromap_08,chromap_08_02,beginner,How do I align ChIP-seq reads with Chromap and write output to a file?
chromap,chromap_08,chromap_08_03,student,I need to align ChIP-seq reads with Chromap and write output to a file
chromap,chromap_08,chromap_08_04,polite,Please align ChIP-seq reads with Chromap and write output to a file
chromap,chromap_08,chromap_08_05,sysadmin,Use chromap to align ChIP-seq reads with Chromap and write output to a file
chromap,chromap_08,chromap_08_06,goal_oriented,I want to align ChIP-seq reads with Chromap and write output to a file
chromap,chromap_08,chromap_08_07,expert,align ChIP-seq reads Chromap write output file
chromap,chromap_08,chromap_08_08,detailed,"I have data that I need to process: align ChIP-seq reads with Chromap and write output to a file, utilizing multiple CPU threads for speed, saving the result to a specified output file"
chromap,chromap_08,chromap_08_09,informal,"Hey, can you help me align ChIP-seq reads with Chromap and write output to a file?"
chromap,chromap_08,chromap_08_10,alternative,Write output to a file after align ChIP-seq reads with Chromap
chromap,chromap_09,chromap_09_01,original,build Chromap genome index in quiet mode
chromap,chromap_09,chromap_09_02,beginner,How do I build Chromap genome index in quiet mode?
chromap,chromap_09,chromap_09_03,student,I need to build Chromap genome index in quiet mode
chromap,chromap_09,chromap_09_04,polite,Please build Chromap genome index in quiet mode
chromap,chromap_09,chromap_09_05,sysadmin,Use chromap to build Chromap genome index in quiet mode
chromap,chromap_09,chromap_09_06,goal_oriented,I want to build Chromap genome index in quiet mode
chromap,chromap_09,chromap_09_07,expert,build Chromap genome index quiet mode
chromap,chromap_09,chromap_09_08,detailed,"I have data that I need to process: build Chromap genome index in quiet mode, saving the result to a specified output file"
chromap,chromap_09,chromap_09_09,informal,"Hey, can you help me build Chromap genome index in quiet mode?"
chromap,chromap_09,chromap_09_10,alternative,Perform: build Chromap genome index in quiet mode
chromap,chromap_10,chromap_10_01,original,align paired-end ATAC-seq reads with Chromap with default parameters
chromap,chromap_10,chromap_10_02,beginner,How do I align paired-end ATAC-seq reads with Chromap with default parameters?
chromap,chromap_10,chromap_10_03,student,I need to align paired-end ATAC-seq reads with Chromap with default parameters
chromap,chromap_10,chromap_10_04,polite,Please align paired-end ATAC-seq reads with Chromap with default parameters
chromap,chromap_10,chromap_10_05,sysadmin,Use chromap to align paired-end ATAC-seq reads with Chromap with default parameters
chromap,chromap_10,chromap_10_06,goal_oriented,I want to align paired-end ATAC-seq reads with Chromap with default parameters
chromap,chromap_10,chromap_10_07,expert,align paired-end ATAC-seq reads Chromap default parameters
chromap,chromap_10,chromap_10_08,detailed,"I have data that I need to process: align paired-end ATAC-seq reads with Chromap with default parameters, utilizing multiple CPU threads for speed, saving the result to a specified output file"
chromap,chromap_10,chromap_10_09,informal,"Hey, can you help me align paired-end ATAC-seq reads with Chromap with default parameters?"
chromap,chromap_10,chromap_10_10,alternative,"With Chromap with default parameters, align paired-end ATAC-seq reads"
cnvkit,cnvkit_01,cnvkit_01_01,original,run CNVkit batch workflow for tumor-normal WES
cnvkit,cnvkit_01,cnvkit_01_02,beginner,How do I run CNVkit batch workflow for tumor-normal WES?
cnvkit,cnvkit_01,cnvkit_01_03,student,I need to run CNVkit batch workflow for tumor-normal WES
cnvkit,cnvkit_01,cnvkit_01_04,polite,Please run CNVkit batch workflow for tumor-normal WES
cnvkit,cnvkit_01,cnvkit_01_05,sysadmin,Use cnvkit to run CNVkit batch workflow for tumor-normal WES
cnvkit,cnvkit_01,cnvkit_01_06,goal_oriented,I want to run CNVkit batch workflow for tumor-normal WES
cnvkit,cnvkit_01,cnvkit_01_07,expert,run CNVkit batch workflow tumor-normal WES
cnvkit,cnvkit_01,cnvkit_01_08,detailed,"I have data that I need to process: run CNVkit batch workflow for tumor-normal WES, utilizing multiple CPU threads for speed, saving the result to a specified output file"
cnvkit,cnvkit_01,cnvkit_01_09,informal,"Hey, can you help me run CNVkit batch workflow for tumor-normal WES?"
cnvkit,cnvkit_01,cnvkit_01_10,alternative,Perform: run CNVkit batch workflow for tumor-normal WES
cnvkit,cnvkit_02,cnvkit_02_01,original,run CNVkit on tumor-only WES with pre-built reference
cnvkit,cnvkit_02,cnvkit_02_02,beginner,How do I run CNVkit on tumor-only WES with pre-built reference?
cnvkit,cnvkit_02,cnvkit_02_03,student,I need to run CNVkit on tumor-only WES with pre-built reference
cnvkit,cnvkit_02,cnvkit_02_04,polite,Please run CNVkit on tumor-only WES with pre-built reference
cnvkit,cnvkit_02,cnvkit_02_05,sysadmin,Use cnvkit to run CNVkit on tumor-only WES with pre-built reference
cnvkit,cnvkit_02,cnvkit_02_06,goal_oriented,I want to run CNVkit on tumor-only WES with pre-built reference
cnvkit,cnvkit_02,cnvkit_02_07,expert,run CNVkit on tumor-only WES pre-built reference
cnvkit,cnvkit_02,cnvkit_02_08,detailed,"I have data that I need to process: run CNVkit on tumor-only WES with pre-built reference, utilizing multiple CPU threads for speed, saving the result to a specified output file"
cnvkit,cnvkit_02,cnvkit_02_09,informal,"Hey, can you help me run CNVkit on tumor-only WES with pre-built reference?"
cnvkit,cnvkit_02,cnvkit_02_10,alternative,"With pre-built reference, run CNVkit on tumor-only WES"
cnvkit,cnvkit_03,cnvkit_03_01,original,visualize CNV scatter plot
cnvkit,cnvkit_03,cnvkit_03_02,beginner,How do I visualize CNV scatter plot?
cnvkit,cnvkit_03,cnvkit_03_03,student,I need to visualize CNV scatter plot
cnvkit,cnvkit_03,cnvkit_03_04,polite,Please visualize CNV scatter plot
cnvkit,cnvkit_03,cnvkit_03_05,sysadmin,Use cnvkit to visualize CNV scatter plot
cnvkit,cnvkit_03,cnvkit_03_06,goal_oriented,I want to visualize CNV scatter plot
cnvkit,cnvkit_03,cnvkit_03_07,expert,visualize CNV scatter plot
cnvkit,cnvkit_03,cnvkit_03_08,detailed,"I have data that I need to process: visualize CNV scatter plot, saving the result to a specified output file"
cnvkit,cnvkit_03,cnvkit_03_09,informal,"Hey, can you help me visualize CNV scatter plot?"
cnvkit,cnvkit_03,cnvkit_03_10,alternative,Perform: visualize CNV scatter plot
cnvkit,cnvkit_04,cnvkit_04_01,original,call integer copy numbers from segments
cnvkit,cnvkit_04,cnvkit_04_02,beginner,How do I call integer copy numbers from segments?
cnvkit,cnvkit_04,cnvkit_04_03,student,I need to call integer copy numbers from segments
cnvkit,cnvkit_04,cnvkit_04_04,polite,Please call integer copy numbers from segments
cnvkit,cnvkit_04,cnvkit_04_05,sysadmin,Use cnvkit to call integer copy numbers from segments
cnvkit,cnvkit_04,cnvkit_04_06,goal_oriented,I want to call integer copy numbers from segments
cnvkit,cnvkit_04,cnvkit_04_07,expert,call integer copy numbers segments
cnvkit,cnvkit_04,cnvkit_04_08,detailed,"I have data that I need to process: call integer copy numbers from segments, saving the result to a specified output file"
cnvkit,cnvkit_04,cnvkit_04_09,informal,"Hey, can you help me call integer copy numbers from segments?"
cnvkit,cnvkit_04,cnvkit_04_10,alternative,Perform: call integer copy numbers from segments
cnvkit,cnvkit_05,cnvkit_05_01,original,run CNVkit batch workflow for tumor-normal WES with default parameters
cnvkit,cnvkit_05,cnvkit_05_02,beginner,How do I run CNVkit batch workflow for tumor-normal WES with default parameters?
cnvkit,cnvkit_05,cnvkit_05_03,student,I need to run CNVkit batch workflow for tumor-normal WES with default parameters
cnvkit,cnvkit_05,cnvkit_05_04,polite,Please run CNVkit batch workflow for tumor-normal WES with default parameters
cnvkit,cnvkit_05,cnvkit_05_05,sysadmin,Use cnvkit to run CNVkit batch workflow for tumor-normal WES with default parameters
cnvkit,cnvkit_05,cnvkit_05_06,goal_oriented,I want to run CNVkit batch workflow for tumor-normal WES with default parameters
cnvkit,cnvkit_05,cnvkit_05_07,expert,run CNVkit batch workflow tumor-normal WES default parameters
cnvkit,cnvkit_05,cnvkit_05_08,detailed,"I have data that I need to process: run CNVkit batch workflow for tumor-normal WES with default parameters, utilizing multiple CPU threads for speed, saving the result to a specified output file"
cnvkit,cnvkit_05,cnvkit_05_09,informal,"Hey, can you help me run CNVkit batch workflow for tumor-normal WES with default parameters?"
cnvkit,cnvkit_05,cnvkit_05_10,alternative,"With default parameters, run CNVkit batch workflow for tumor-normal WES"
cnvkit,cnvkit_06,cnvkit_06_01,original,run CNVkit on tumor-only WES with pre-built reference with verbose output
cnvkit,cnvkit_06,cnvkit_06_02,beginner,How do I run CNVkit on tumor-only WES with pre-built reference with verbose output?
cnvkit,cnvkit_06,cnvkit_06_03,student,I need to run CNVkit on tumor-only WES with pre-built reference with verbose output
cnvkit,cnvkit_06,cnvkit_06_04,polite,Please run CNVkit on tumor-only WES with pre-built reference with verbose output
cnvkit,cnvkit_06,cnvkit_06_05,sysadmin,Use cnvkit to run CNVkit on tumor-only WES with pre-built reference with verbose output
cnvkit,cnvkit_06,cnvkit_06_06,goal_oriented,I want to run CNVkit on tumor-only WES with pre-built reference with verbose output
cnvkit,cnvkit_06,cnvkit_06_07,expert,run CNVkit on tumor-only WES pre-built reference verbose output
cnvkit,cnvkit_06,cnvkit_06_08,detailed,"I have data that I need to process: run CNVkit on tumor-only WES with pre-built reference with verbose output, utilizing multiple CPU threads for speed, saving the result to a specified output file"
cnvkit,cnvkit_06,cnvkit_06_09,informal,"Hey, can you help me run CNVkit on tumor-only WES with pre-built reference with verbose output?"
cnvkit,cnvkit_06,cnvkit_06_10,alternative,"With pre-built reference with verbose output, run CNVkit on tumor-only WES"
cnvkit,cnvkit_07,cnvkit_07_01,original,visualize CNV scatter plot using multiple threads
cnvkit,cnvkit_07,cnvkit_07_02,beginner,How do I visualize CNV scatter plot using multiple threads?
cnvkit,cnvkit_07,cnvkit_07_03,student,I need to visualize CNV scatter plot using multiple threads
cnvkit,cnvkit_07,cnvkit_07_04,polite,Please visualize CNV scatter plot using multiple threads
cnvkit,cnvkit_07,cnvkit_07_05,sysadmin,Use cnvkit to visualize CNV scatter plot using multiple threads
cnvkit,cnvkit_07,cnvkit_07_06,goal_oriented,I want to visualize CNV scatter plot using multiple threads
cnvkit,cnvkit_07,cnvkit_07_07,expert,visualize CNV scatter plot multiple threads
cnvkit,cnvkit_07,cnvkit_07_08,detailed,"I have data that I need to process: visualize CNV scatter plot using multiple threads, utilizing multiple CPU threads for speed, saving the result to a specified output file"
cnvkit,cnvkit_07,cnvkit_07_09,informal,"Hey, can you help me visualize CNV scatter plot using multiple threads?"
cnvkit,cnvkit_07,cnvkit_07_10,alternative,Perform: visualize CNV scatter plot using multiple threads
cnvkit,cnvkit_08,cnvkit_08_01,original,call integer copy numbers from segments and write output to a file
cnvkit,cnvkit_08,cnvkit_08_02,beginner,How do I call integer copy numbers from segments and write output to a file?
cnvkit,cnvkit_08,cnvkit_08_03,student,I need to call integer copy numbers from segments and write output to a file
cnvkit,cnvkit_08,cnvkit_08_04,polite,Please call integer copy numbers from segments and write output to a file
cnvkit,cnvkit_08,cnvkit_08_05,sysadmin,Use cnvkit to call integer copy numbers from segments and write output to a file
cnvkit,cnvkit_08,cnvkit_08_06,goal_oriented,I want to call integer copy numbers from segments and write output to a file
cnvkit,cnvkit_08,cnvkit_08_07,expert,call integer copy numbers segments write output file
cnvkit,cnvkit_08,cnvkit_08_08,detailed,"I have data that I need to process: call integer copy numbers from segments and write output to a file, saving the result to a specified output file"
cnvkit,cnvkit_08,cnvkit_08_09,informal,"Hey, can you help me call integer copy numbers from segments and write output to a file?"
cnvkit,cnvkit_08,cnvkit_08_10,alternative,Write output to a file after call integer copy numbers from segments
cnvkit,cnvkit_09,cnvkit_09_01,original,run CNVkit batch workflow for tumor-normal WES in quiet mode
cnvkit,cnvkit_09,cnvkit_09_02,beginner,How do I run CNVkit batch workflow for tumor-normal WES in quiet mode?
cnvkit,cnvkit_09,cnvkit_09_03,student,I need to run CNVkit batch workflow for tumor-normal WES in quiet mode
cnvkit,cnvkit_09,cnvkit_09_04,polite,Please run CNVkit batch workflow for tumor-normal WES in quiet mode
cnvkit,cnvkit_09,cnvkit_09_05,sysadmin,Use cnvkit to run CNVkit batch workflow for tumor-normal WES in quiet mode
cnvkit,cnvkit_09,cnvkit_09_06,goal_oriented,I want to run CNVkit batch workflow for tumor-normal WES in quiet mode
cnvkit,cnvkit_09,cnvkit_09_07,expert,run CNVkit batch workflow tumor-normal WES quiet mode
cnvkit,cnvkit_09,cnvkit_09_08,detailed,"I have data that I need to process: run CNVkit batch workflow for tumor-normal WES in quiet mode, utilizing multiple CPU threads for speed, saving the result to a specified output file"
cnvkit,cnvkit_09,cnvkit_09_09,informal,"Hey, can you help me run CNVkit batch workflow for tumor-normal WES in quiet mode?"
cnvkit,cnvkit_09,cnvkit_09_10,alternative,Perform: run CNVkit batch workflow for tumor-normal WES in quiet mode
cnvkit,cnvkit_10,cnvkit_10_01,original,run CNVkit on tumor-only WES with pre-built reference with default parameters
cnvkit,cnvkit_10,cnvkit_10_02,beginner,How do I run CNVkit on tumor-only WES with pre-built reference with default parameters?
cnvkit,cnvkit_10,cnvkit_10_03,student,I need to run CNVkit on tumor-only WES with pre-built reference with default parameters
cnvkit,cnvkit_10,cnvkit_10_04,polite,Please run CNVkit on tumor-only WES with pre-built reference with default parameters
cnvkit,cnvkit_10,cnvkit_10_05,sysadmin,Use cnvkit to run CNVkit on tumor-only WES with pre-built reference with default parameters
cnvkit,cnvkit_10,cnvkit_10_06,goal_oriented,I want to run CNVkit on tumor-only WES with pre-built reference with default parameters
cnvkit,cnvkit_10,cnvkit_10_07,expert,run CNVkit on tumor-only WES pre-built reference default parameters
cnvkit,cnvkit_10,cnvkit_10_08,detailed,"I have data that I need to process: run CNVkit on tumor-only WES with pre-built reference with default parameters, utilizing multiple CPU threads for speed, saving the result to a specified output file"
cnvkit,cnvkit_10,cnvkit_10_09,informal,"Hey, can you help me run CNVkit on tumor-only WES with pre-built reference with default parameters?"
cnvkit,cnvkit_10,cnvkit_10_10,alternative,"With pre-built reference with default parameters, run CNVkit on tumor-only WES"
crossmap,crossmap_01,crossmap_01_01,original,convert BED file from hg19 to hg38 coordinates
crossmap,crossmap_01,crossmap_01_02,beginner,How do I convert BED file from hg19 to hg38 coordinates?
crossmap,crossmap_01,crossmap_01_03,student,I need to convert BED file from hg19 to hg38 coordinates
crossmap,crossmap_01,crossmap_01_04,polite,Please convert BED file from hg19 to hg38 coordinates
crossmap,crossmap_01,crossmap_01_05,sysadmin,Use crossmap to convert BED file from hg19 to hg38 coordinates
crossmap,crossmap_01,crossmap_01_06,goal_oriented,I want to convert BED file from hg19 to hg38 coordinates
crossmap,crossmap_01,crossmap_01_07,expert,convert BED file hg19 hg38 coordinates
crossmap,crossmap_01,crossmap_01_08,detailed,I have data that I need to process: convert BED file from hg19 to hg38 coordinates
crossmap,crossmap_01,crossmap_01_09,informal,"Hey, can you help me convert BED file from hg19 to hg38 coordinates?"
crossmap,crossmap_01,crossmap_01_10,alternative,Output hg38 coordinates by performing: convert BED file from hg19
crossmap,crossmap_02,crossmap_02_01,original,convert VCF file from hg19 to hg38 with target reference
crossmap,crossmap_02,crossmap_02_02,beginner,How do I convert VCF file from hg19 to hg38 with target reference?
crossmap,crossmap_02,crossmap_02_03,student,I need to convert VCF file from hg19 to hg38 with target reference
crossmap,crossmap_02,crossmap_02_04,polite,Please convert VCF file from hg19 to hg38 with target reference
crossmap,crossmap_02,crossmap_02_05,sysadmin,Use crossmap to convert VCF file from hg19 to hg38 with target reference
crossmap,crossmap_02,crossmap_02_06,goal_oriented,I want to convert VCF file from hg19 to hg38 with target reference
crossmap,crossmap_02,crossmap_02_07,expert,convert VCF file hg19 hg38 target reference
crossmap,crossmap_02,crossmap_02_08,detailed,I have data that I need to process: convert VCF file from hg19 to hg38 with target reference
crossmap,crossmap_02,crossmap_02_09,informal,"Hey, can you help me convert VCF file from hg19 to hg38 with target reference?"
crossmap,crossmap_02,crossmap_02_10,alternative,"With target reference, convert VCF file from hg19 to hg38"
crossmap,crossmap_03,crossmap_03_01,original,convert GFF/GTF annotation from one assembly to another
crossmap,crossmap_03,crossmap_03_02,beginner,How do I convert GFF/GTF annotation from one assembly to another?
crossmap,crossmap_03,crossmap_03_03,student,I need to convert GFF/GTF annotation from one assembly to another
crossmap,crossmap_03,crossmap_03_04,polite,Please convert GFF/GTF annotation from one assembly to another
crossmap,crossmap_03,crossmap_03_05,sysadmin,Use crossmap to convert GFF/GTF annotation from one assembly to another
crossmap,crossmap_03,crossmap_03_06,goal_oriented,I want to convert GFF/GTF annotation from one assembly to another
crossmap,crossmap_03,crossmap_03_07,expert,convert GFF/GTF annotation one assembly another
crossmap,crossmap_03,crossmap_03_08,detailed,I have data that I need to process: convert GFF/GTF annotation from one assembly to another
crossmap,crossmap_03,crossmap_03_09,informal,"Hey, can you help me convert GFF/GTF annotation from one assembly to another?"
crossmap,crossmap_03,crossmap_03_10,alternative,Output another by performing: convert GFF/GTF annotation from one assembly
crossmap,crossmap_04,crossmap_04_01,original,convert BAM file from one genome build to another
crossmap,crossmap_04,crossmap_04_02,beginner,How do I convert BAM file from one genome build to another?
crossmap,crossmap_04,crossmap_04_03,student,I need to convert BAM file from one genome build to another
crossmap,crossmap_04,crossmap_04_04,polite,Please convert BAM file from one genome build to another
crossmap,crossmap_04,crossmap_04_05,sysadmin,Use crossmap to convert BAM file from one genome build to another
crossmap,crossmap_04,crossmap_04_06,goal_oriented,I want to convert BAM file from one genome build to another
crossmap,crossmap_04,crossmap_04_07,expert,convert BAM file one genome build another
crossmap,crossmap_04,crossmap_04_08,detailed,I have data that I need to process: convert BAM file from one genome build to another
crossmap,crossmap_04,crossmap_04_09,informal,"Hey, can you help me convert BAM file from one genome build to another?"
crossmap,crossmap_04,crossmap_04_10,alternative,Output another by performing: convert BAM file from one genome build
crossmap,crossmap_05,crossmap_05_01,original,convert BED file from hg19 to hg38 coordinates with default parameters
crossmap,crossmap_05,crossmap_05_02,beginner,How do I convert BED file from hg19 to hg38 coordinates with default parameters?
crossmap,crossmap_05,crossmap_05_03,student,I need to convert BED file from hg19 to hg38 coordinates with default parameters
crossmap,crossmap_05,crossmap_05_04,polite,Please convert BED file from hg19 to hg38 coordinates with default parameters
crossmap,crossmap_05,crossmap_05_05,sysadmin,Use crossmap to convert BED file from hg19 to hg38 coordinates with default parameters
crossmap,crossmap_05,crossmap_05_06,goal_oriented,I want to convert BED file from hg19 to hg38 coordinates with default parameters
crossmap,crossmap_05,crossmap_05_07,expert,convert BED file hg19 hg38 coordinates default parameters
crossmap,crossmap_05,crossmap_05_08,detailed,I have data that I need to process: convert BED file from hg19 to hg38 coordinates with default parameters
crossmap,crossmap_05,crossmap_05_09,informal,"Hey, can you help me convert BED file from hg19 to hg38 coordinates with default parameters?"
crossmap,crossmap_05,crossmap_05_10,alternative,"With default parameters, convert BED file from hg19 to hg38 coordinates"
crossmap,crossmap_06,crossmap_06_01,original,convert VCF file from hg19 to hg38 with target reference with verbose output
crossmap,crossmap_06,crossmap_06_02,beginner,How do I convert VCF file from hg19 to hg38 with target reference with verbose output?
crossmap,crossmap_06,crossmap_06_03,student,I need to convert VCF file from hg19 to hg38 with target reference with verbose output
crossmap,crossmap_06,crossmap_06_04,polite,Please convert VCF file from hg19 to hg38 with target reference with verbose output
crossmap,crossmap_06,crossmap_06_05,sysadmin,Use crossmap to convert VCF file from hg19 to hg38 with target reference with verbose output
crossmap,crossmap_06,crossmap_06_06,goal_oriented,I want to convert VCF file from hg19 to hg38 with target reference with verbose output
crossmap,crossmap_06,crossmap_06_07,expert,convert VCF file hg19 hg38 target reference verbose output
crossmap,crossmap_06,crossmap_06_08,detailed,I have data that I need to process: convert VCF file from hg19 to hg38 with target reference with verbose output
crossmap,crossmap_06,crossmap_06_09,informal,"Hey, can you help me convert VCF file from hg19 to hg38 with target reference with verbose output?"
crossmap,crossmap_06,crossmap_06_10,alternative,"With target reference with verbose output, convert VCF file from hg19 to hg38"
crossmap,crossmap_07,crossmap_07_01,original,convert GFF/GTF annotation from one assembly to another using multiple threads
crossmap,crossmap_07,crossmap_07_02,beginner,How do I convert GFF/GTF annotation from one assembly to another using multiple threads?
crossmap,crossmap_07,crossmap_07_03,student,I need to convert GFF/GTF annotation from one assembly to another using multiple threads
crossmap,crossmap_07,crossmap_07_04,polite,Please convert GFF/GTF annotation from one assembly to another using multiple threads
crossmap,crossmap_07,crossmap_07_05,sysadmin,Use crossmap to convert GFF/GTF annotation from one assembly to another using multiple threads
crossmap,crossmap_07,crossmap_07_06,goal_oriented,I want to convert GFF/GTF annotation from one assembly to another using multiple threads
crossmap,crossmap_07,crossmap_07_07,expert,convert GFF/GTF annotation one assembly another multiple threads
crossmap,crossmap_07,crossmap_07_08,detailed,"I have data that I need to process: convert GFF/GTF annotation from one assembly to another using multiple threads, utilizing multiple CPU threads for speed"
crossmap,crossmap_07,crossmap_07_09,informal,"Hey, can you help me convert GFF/GTF annotation from one assembly to another using multiple threads?"
crossmap,crossmap_07,crossmap_07_10,alternative,Output another using multiple threads by performing: convert GFF/GTF annotation from one assembly
crossmap,crossmap_08,crossmap_08_01,original,convert BAM file from one genome build to another and write output to a file
crossmap,crossmap_08,crossmap_08_02,beginner,How do I convert BAM file from one genome build to another and write output to a file?
crossmap,crossmap_08,crossmap_08_03,student,I need to convert BAM file from one genome build to another and write output to a file
crossmap,crossmap_08,crossmap_08_04,polite,Please convert BAM file from one genome build to another and write output to a file
crossmap,crossmap_08,crossmap_08_05,sysadmin,Use crossmap to convert BAM file from one genome build to another and write output to a file
crossmap,crossmap_08,crossmap_08_06,goal_oriented,I want to convert BAM file from one genome build to another and write output to a file
crossmap,crossmap_08,crossmap_08_07,expert,convert BAM file one genome build another write output file
crossmap,crossmap_08,crossmap_08_08,detailed,"I have data that I need to process: convert BAM file from one genome build to another and write output to a file, saving the result to a specified output file"
crossmap,crossmap_08,crossmap_08_09,informal,"Hey, can you help me convert BAM file from one genome build to another and write output to a file?"
crossmap,crossmap_08,crossmap_08_10,alternative,Write output to a file after convert BAM file from one genome build to another
crossmap,crossmap_09,crossmap_09_01,original,convert BED file from hg19 to hg38 coordinates in quiet mode
crossmap,crossmap_09,crossmap_09_02,beginner,How do I convert BED file from hg19 to hg38 coordinates in quiet mode?
crossmap,crossmap_09,crossmap_09_03,student,I need to convert BED file from hg19 to hg38 coordinates in quiet mode
crossmap,crossmap_09,crossmap_09_04,polite,Please convert BED file from hg19 to hg38 coordinates in quiet mode
crossmap,crossmap_09,crossmap_09_05,sysadmin,Use crossmap to convert BED file from hg19 to hg38 coordinates in quiet mode
crossmap,crossmap_09,crossmap_09_06,goal_oriented,I want to convert BED file from hg19 to hg38 coordinates in quiet mode
crossmap,crossmap_09,crossmap_09_07,expert,convert BED file hg19 hg38 coordinates quiet mode
crossmap,crossmap_09,crossmap_09_08,detailed,I have data that I need to process: convert BED file from hg19 to hg38 coordinates in quiet mode
crossmap,crossmap_09,crossmap_09_09,informal,"Hey, can you help me convert BED file from hg19 to hg38 coordinates in quiet mode?"
crossmap,crossmap_09,crossmap_09_10,alternative,Output hg38 coordinates in quiet mode by performing: convert BED file from hg19
crossmap,crossmap_10,crossmap_10_01,original,convert VCF file from hg19 to hg38 with target reference with default parameters
crossmap,crossmap_10,crossmap_10_02,beginner,How do I convert VCF file from hg19 to hg38 with target reference with default parameters?
crossmap,crossmap_10,crossmap_10_03,student,I need to convert VCF file from hg19 to hg38 with target reference with default parameters
crossmap,crossmap_10,crossmap_10_04,polite,Please convert VCF file from hg19 to hg38 with target reference with default parameters
crossmap,crossmap_10,crossmap_10_05,sysadmin,Use crossmap to convert VCF file from hg19 to hg38 with target reference with default parameters
crossmap,crossmap_10,crossmap_10_06,goal_oriented,I want to convert VCF file from hg19 to hg38 with target reference with default parameters
crossmap,crossmap_10,crossmap_10_07,expert,convert VCF file hg19 hg38 target reference default parameters
crossmap,crossmap_10,crossmap_10_08,detailed,I have data that I need to process: convert VCF file from hg19 to hg38 with target reference with default parameters
crossmap,crossmap_10,crossmap_10_09,informal,"Hey, can you help me convert VCF file from hg19 to hg38 with target reference with default parameters?"
crossmap,crossmap_10,crossmap_10_10,alternative,"With target reference with default parameters, convert VCF file from hg19 to hg38"
curl,curl_01,curl_01_01,original,download a file and save with its original filename
curl,curl_01,curl_01_02,beginner,How do I download a file and save with its original filename?
curl,curl_01,curl_01_03,student,I need to download a file and save with its original filename
curl,curl_01,curl_01_04,polite,Please download a file and save with its original filename
curl,curl_01,curl_01_05,sysadmin,Use curl to download a file and save with its original filename
curl,curl_01,curl_01_06,goal_oriented,I want to download a file and save with its original filename
curl,curl_01,curl_01_07,expert,download file save its original filename
curl,curl_01,curl_01_08,detailed,I have data that I need to process: download a file and save with its original filename
curl,curl_01,curl_01_09,informal,"Hey, can you help me download a file and save with its original filename?"
curl,curl_01,curl_01_10,alternative,Save with its original filename after download a file
curl,curl_02,curl_02_01,original,download a file and save to a specific local filename
curl,curl_02,curl_02_02,beginner,How do I download a file and save to a specific local filename?
curl,curl_02,curl_02_03,student,I need to download a file and save to a specific local filename
curl,curl_02,curl_02_04,polite,Please download a file and save to a specific local filename
curl,curl_02,curl_02_05,sysadmin,Use curl to download a file and save to a specific local filename
curl,curl_02,curl_02_06,goal_oriented,I want to download a file and save to a specific local filename
curl,curl_02,curl_02_07,expert,download file save specific local filename
curl,curl_02,curl_02_08,detailed,"I have data that I need to process: download a file and save to a specific local filename, saving the result to a specified output file"
curl,curl_02,curl_02_09,informal,"Hey, can you help me download a file and save to a specific local filename?"
curl,curl_02,curl_02_10,alternative,Save to a specific local filename after download a file
curl,curl_03,curl_03_01,original,send a JSON POST request to an API
curl,curl_03,curl_03_02,beginner,How do I send a JSON POST request to an API?
curl,curl_03,curl_03_03,student,I need to send a JSON POST request to an API
curl,curl_03,curl_03_04,polite,Please send a JSON POST request to an API
curl,curl_03,curl_03_05,sysadmin,Use curl to send a JSON POST request to an API
curl,curl_03,curl_03_06,goal_oriented,I want to send a JSON POST request to an API
curl,curl_03,curl_03_07,expert,send JSON POST request API
curl,curl_03,curl_03_08,detailed,I have data that I need to process: send a JSON POST request to an API
curl,curl_03,curl_03_09,informal,"Hey, can you help me send a JSON POST request to an API?"
curl,curl_03,curl_03_10,alternative,Output an API by performing: send a JSON POST request
curl,curl_04,curl_04_01,original,authenticate with a Bearer token and call an API
curl,curl_04,curl_04_02,beginner,How do I authenticate with a Bearer token and call an API?
curl,curl_04,curl_04_03,student,I need to authenticate with a Bearer token and call an API
curl,curl_04,curl_04_04,polite,Please authenticate with a Bearer token and call an API
curl,curl_04,curl_04_05,sysadmin,Use curl to authenticate with a Bearer token and call an API
curl,curl_04,curl_04_06,goal_oriented,I want to authenticate with a Bearer token and call an API
curl,curl_04,curl_04_07,expert,authenticate Bearer token call API
curl,curl_04,curl_04_08,detailed,I have data that I need to process: authenticate with a Bearer token and call an API
curl,curl_04,curl_04_09,informal,"Hey, can you help me authenticate with a Bearer token and call an API?"
curl,curl_04,curl_04_10,alternative,Call an API after authenticate with a Bearer token
curl,curl_05,curl_05_01,original,resume an interrupted download
curl,curl_05,curl_05_02,beginner,How do I resume an interrupted download?
curl,curl_05,curl_05_03,student,I need to resume an interrupted download
curl,curl_05,curl_05_04,polite,Please resume an interrupted download
curl,curl_05,curl_05_05,sysadmin,Use curl to resume an interrupted download
curl,curl_05,curl_05_06,goal_oriented,I want to resume an interrupted download
curl,curl_05,curl_05_07,expert,resume interrupted download
curl,curl_05,curl_05_08,detailed,I have data that I need to process: resume an interrupted download
curl,curl_05,curl_05_09,informal,"Hey, can you help me resume an interrupted download?"
curl,curl_05,curl_05_10,alternative,Perform: resume an interrupted download
curl,curl_06,curl_06_01,original,fetch only HTTP response headers
curl,curl_06,curl_06_02,beginner,How do I fetch only HTTP response headers?
curl,curl_06,curl_06_03,student,I need to fetch only HTTP response headers
curl,curl_06,curl_06_04,polite,Please fetch only HTTP response headers
curl,curl_06,curl_06_05,sysadmin,Use curl to fetch only HTTP response headers
curl,curl_06,curl_06_06,goal_oriented,I want to fetch only HTTP response headers
curl,curl_06,curl_06_07,expert,fetch only HTTP response headers
curl,curl_06,curl_06_08,detailed,I have data that I need to process: fetch only HTTP response headers
curl,curl_06,curl_06_09,informal,"Hey, can you help me fetch only HTTP response headers?"
curl,curl_06,curl_06_10,alternative,Perform: fetch only HTTP response headers
curl,curl_07,curl_07_01,original,send a multipart form upload
curl,curl_07,curl_07_02,beginner,How do I send a multipart form upload?
curl,curl_07,curl_07_03,student,I need to send a multipart form upload
curl,curl_07,curl_07_04,polite,Please send a multipart form upload
curl,curl_07,curl_07_05,sysadmin,Use curl to send a multipart form upload
curl,curl_07,curl_07_06,goal_oriented,I want to send a multipart form upload
curl,curl_07,curl_07_07,expert,send multipart form upload
curl,curl_07,curl_07_08,detailed,I have data that I need to process: send a multipart form upload
curl,curl_07,curl_07_09,informal,"Hey, can you help me send a multipart form upload?"
curl,curl_07,curl_07_10,alternative,Perform: send a multipart form upload
curl,curl_08,curl_08_01,original,download with progress bar and follow redirects silently
curl,curl_08,curl_08_02,beginner,How do I download with progress bar and follow redirects silently?
curl,curl_08,curl_08_03,student,I need to download with progress bar and follow redirects silently
curl,curl_08,curl_08_04,polite,Please download with progress bar and follow redirects silently
curl,curl_08,curl_08_05,sysadmin,Use curl to download with progress bar and follow redirects silently
curl,curl_08,curl_08_06,goal_oriented,I want to download with progress bar and follow redirects silently
curl,curl_08,curl_08_07,expert,download progress bar follow redirects silently
curl,curl_08,curl_08_08,detailed,"I have data that I need to process: download with progress bar and follow redirects silently, saving the result to a specified output file"
curl,curl_08,curl_08_09,informal,"Hey, can you help me download with progress bar and follow redirects silently?"
curl,curl_08,curl_08_10,alternative,Follow redirects silently after download with progress bar
curl,curl_09,curl_09_01,original,set a connection timeout and retry on failure
curl,curl_09,curl_09_02,beginner,How do I set a connection timeout and retry on failure?
curl,curl_09,curl_09_03,student,I need to set a connection timeout and retry on failure
curl,curl_09,curl_09_04,polite,Please set a connection timeout and retry on failure
curl,curl_09,curl_09_05,sysadmin,Use curl to set a connection timeout and retry on failure
curl,curl_09,curl_09_06,goal_oriented,I want to set a connection timeout and retry on failure
curl,curl_09,curl_09_07,expert,set connection timeout retry on failure
curl,curl_09,curl_09_08,detailed,I have data that I need to process: set a connection timeout and retry on failure
curl,curl_09,curl_09_09,informal,"Hey, can you help me set a connection timeout and retry on failure?"
curl,curl_09,curl_09_10,alternative,Retry on failure after set a connection timeout
curl,curl_10,curl_10_01,original,pass basic authentication credentials
curl,curl_10,curl_10_02,beginner,How do I pass basic authentication credentials?
curl,curl_10,curl_10_03,student,I need to pass basic authentication credentials
curl,curl_10,curl_10_04,polite,Please pass basic authentication credentials
curl,curl_10,curl_10_05,sysadmin,Use curl to pass basic authentication credentials
curl,curl_10,curl_10_06,goal_oriented,I want to pass basic authentication credentials
curl,curl_10,curl_10_07,expert,pass basic authentication credentials
curl,curl_10,curl_10_08,detailed,I have data that I need to process: pass basic authentication credentials
curl,curl_10,curl_10_09,informal,"Hey, can you help me pass basic authentication credentials?"
curl,curl_10,curl_10_10,alternative,Perform: pass basic authentication credentials
cutadapt,cutadapt_01,cutadapt_01_01,original,remove Illumina TruSeq adapters from paired-end reads
cutadapt,cutadapt_01,cutadapt_01_02,beginner,How do I remove Illumina TruSeq adapters from paired-end reads?
cutadapt,cutadapt_01,cutadapt_01_03,student,I need to remove Illumina TruSeq adapters from paired-end reads
cutadapt,cutadapt_01,cutadapt_01_04,polite,Please remove Illumina TruSeq adapters from paired-end reads
cutadapt,cutadapt_01,cutadapt_01_05,sysadmin,Use cutadapt to remove Illumina TruSeq adapters from paired-end reads
cutadapt,cutadapt_01,cutadapt_01_06,goal_oriented,I want to remove Illumina TruSeq adapters from paired-end reads
cutadapt,cutadapt_01,cutadapt_01_07,expert,remove Illumina TruSeq adapters paired-end reads
cutadapt,cutadapt_01,cutadapt_01_08,detailed,"I have data that I need to process: remove Illumina TruSeq adapters from paired-end reads, utilizing multiple CPU threads for speed, saving the result to a specified output file"
cutadapt,cutadapt_01,cutadapt_01_09,informal,"Hey, can you help me remove Illumina TruSeq adapters from paired-end reads?"
cutadapt,cutadapt_01,cutadapt_01_10,alternative,Perform: remove Illumina TruSeq adapters from paired-end reads
cutadapt,cutadapt_02,cutadapt_02_01,original,"trim adapters and quality-filter, discarding short reads"
cutadapt,cutadapt_02,cutadapt_02_02,beginner,"How do I trim adapters and quality-filter, discarding short reads?"
cutadapt,cutadapt_02,cutadapt_02_03,student,"I need to trim adapters and quality-filter, discarding short reads"
cutadapt,cutadapt_02,cutadapt_02_04,polite,"Please trim adapters and quality-filter, discarding short reads"
cutadapt,cutadapt_02,cutadapt_02_05,sysadmin,"Use cutadapt to trim adapters and quality-filter, discarding short reads"
cutadapt,cutadapt_02,cutadapt_02_06,goal_oriented,"I want to trim adapters and quality-filter, discarding short reads"
cutadapt,cutadapt_02,cutadapt_02_07,expert,"trim adapters quality-filter, discarding short reads"
cutadapt,cutadapt_02,cutadapt_02_08,detailed,"I have data that I need to process: trim adapters and quality-filter, discarding short reads, utilizing multiple CPU threads for speed, saving the result to a specified output file"
cutadapt,cutadapt_02,cutadapt_02_09,informal,"Hey, can you help me trim adapters and quality-filter, discarding short reads?"
cutadapt,cutadapt_02,cutadapt_02_10,alternative,"Quality-filter, discarding short reads after trim adapters"
cutadapt,cutadapt_03,cutadapt_03_01,original,remove polyA tail from single-end RNA-seq reads
cutadapt,cutadapt_03,cutadapt_03_02,beginner,How do I remove polyA tail from single-end RNA-seq reads?
cutadapt,cutadapt_03,cutadapt_03_03,student,I need to remove polyA tail from single-end RNA-seq reads
cutadapt,cutadapt_03,cutadapt_03_04,polite,Please remove polyA tail from single-end RNA-seq reads
cutadapt,cutadapt_03,cutadapt_03_05,sysadmin,Use cutadapt to remove polyA tail from single-end RNA-seq reads
cutadapt,cutadapt_03,cutadapt_03_06,goal_oriented,I want to remove polyA tail from single-end RNA-seq reads
cutadapt,cutadapt_03,cutadapt_03_07,expert,remove polyA tail single-end RNA-seq reads
cutadapt,cutadapt_03,cutadapt_03_08,detailed,"I have data that I need to process: remove polyA tail from single-end RNA-seq reads, saving the result to a specified output file"
cutadapt,cutadapt_03,cutadapt_03_09,informal,"Hey, can you help me remove polyA tail from single-end RNA-seq reads?"
cutadapt,cutadapt_03,cutadapt_03_10,alternative,Perform: remove polyA tail from single-end RNA-seq reads
cutadapt,cutadapt_04,cutadapt_04_01,original,trim Nextera transposase adapters from paired-end ATAC-seq data
cutadapt,cutadapt_04,cutadapt_04_02,beginner,How do I trim Nextera transposase adapters from paired-end ATAC-seq data?
cutadapt,cutadapt_04,cutadapt_04_03,student,I need to trim Nextera transposase adapters from paired-end ATAC-seq data
cutadapt,cutadapt_04,cutadapt_04_04,polite,Please trim Nextera transposase adapters from paired-end ATAC-seq data
cutadapt,cutadapt_04,cutadapt_04_05,sysadmin,Use cutadapt to trim Nextera transposase adapters from paired-end ATAC-seq data
cutadapt,cutadapt_04,cutadapt_04_06,goal_oriented,I want to trim Nextera transposase adapters from paired-end ATAC-seq data
cutadapt,cutadapt_04,cutadapt_04_07,expert,trim Nextera transposase adapters paired-end ATAC-seq data
cutadapt,cutadapt_04,cutadapt_04_08,detailed,"I have data that I need to process: trim Nextera transposase adapters from paired-end ATAC-seq data, utilizing multiple CPU threads for speed, saving the result to a specified output file"
cutadapt,cutadapt_04,cutadapt_04_09,informal,"Hey, can you help me trim Nextera transposase adapters from paired-end ATAC-seq data?"
cutadapt,cutadapt_04,cutadapt_04_10,alternative,Perform: trim Nextera transposase adapters from paired-end ATAC-seq data
cutadapt,cutadapt_05,cutadapt_05_01,original,remove 5' primer from single-end amplicon reads
cutadapt,cutadapt_05,cutadapt_05_02,beginner,How do I remove 5' primer from single-end amplicon reads?
cutadapt,cutadapt_05,cutadapt_05_03,student,I need to remove 5' primer from single-end amplicon reads
cutadapt,cutadapt_05,cutadapt_05_04,polite,Please remove 5' primer from single-end amplicon reads
cutadapt,cutadapt_05,cutadapt_05_05,sysadmin,Use cutadapt to remove 5' primer from single-end amplicon reads
cutadapt,cutadapt_05,cutadapt_05_06,goal_oriented,I want to remove 5' primer from single-end amplicon reads
cutadapt,cutadapt_05,cutadapt_05_07,expert,remove 5' primer single-end amplicon reads
cutadapt,cutadapt_05,cutadapt_05_08,detailed,"I have data that I need to process: remove 5' primer from single-end amplicon reads, saving the result to a specified output file"
cutadapt,cutadapt_05,cutadapt_05_09,informal,"Hey, can you help me remove 5' primer from single-end amplicon reads?"
cutadapt,cutadapt_05,cutadapt_05_10,alternative,Perform: remove 5' primer from single-end amplicon reads
cutadapt,cutadapt_06,cutadapt_06_01,original,remove Illumina TruSeq adapters from paired-end reads with verbose output
cutadapt,cutadapt_06,cutadapt_06_02,beginner,How do I remove Illumina TruSeq adapters from paired-end reads with verbose output?
cutadapt,cutadapt_06,cutadapt_06_03,student,I need to remove Illumina TruSeq adapters from paired-end reads with verbose output
cutadapt,cutadapt_06,cutadapt_06_04,polite,Please remove Illumina TruSeq adapters from paired-end reads with verbose output
cutadapt,cutadapt_06,cutadapt_06_05,sysadmin,Use cutadapt to remove Illumina TruSeq adapters from paired-end reads with verbose output
cutadapt,cutadapt_06,cutadapt_06_06,goal_oriented,I want to remove Illumina TruSeq adapters from paired-end reads with verbose output
cutadapt,cutadapt_06,cutadapt_06_07,expert,remove Illumina TruSeq adapters paired-end reads verbose output
cutadapt,cutadapt_06,cutadapt_06_08,detailed,"I have data that I need to process: remove Illumina TruSeq adapters from paired-end reads with verbose output, utilizing multiple CPU threads for speed, saving the result to a specified output file"
cutadapt,cutadapt_06,cutadapt_06_09,informal,"Hey, can you help me remove Illumina TruSeq adapters from paired-end reads with verbose output?"
cutadapt,cutadapt_06,cutadapt_06_10,alternative,"With verbose output, remove Illumina TruSeq adapters from paired-end reads"
cutadapt,cutadapt_07,cutadapt_07_01,original,"trim adapters and quality-filter, discarding short reads using multiple threads"
cutadapt,cutadapt_07,cutadapt_07_02,beginner,"How do I trim adapters and quality-filter, discarding short reads using multiple threads?"
cutadapt,cutadapt_07,cutadapt_07_03,student,"I need to trim adapters and quality-filter, discarding short reads using multiple threads"
cutadapt,cutadapt_07,cutadapt_07_04,polite,"Please trim adapters and quality-filter, discarding short reads using multiple threads"
cutadapt,cutadapt_07,cutadapt_07_05,sysadmin,"Use cutadapt to trim adapters and quality-filter, discarding short reads using multiple threads"
cutadapt,cutadapt_07,cutadapt_07_06,goal_oriented,"I want to trim adapters and quality-filter, discarding short reads using multiple threads"
cutadapt,cutadapt_07,cutadapt_07_07,expert,"trim adapters quality-filter, discarding short reads multiple threads"
cutadapt,cutadapt_07,cutadapt_07_08,detailed,"I have data that I need to process: trim adapters and quality-filter, discarding short reads using multiple threads, utilizing multiple CPU threads for speed, saving the result to a specified output file"
cutadapt,cutadapt_07,cutadapt_07_09,informal,"Hey, can you help me trim adapters and quality-filter, discarding short reads using multiple threads?"
cutadapt,cutadapt_07,cutadapt_07_10,alternative,"Quality-filter, discarding short reads using multiple threads after trim adapters"
cutadapt,cutadapt_08,cutadapt_08_01,original,remove polyA tail from single-end RNA-seq reads and write output to a file
cutadapt,cutadapt_08,cutadapt_08_02,beginner,How do I remove polyA tail from single-end RNA-seq reads and write output to a file?
cutadapt,cutadapt_08,cutadapt_08_03,student,I need to remove polyA tail from single-end RNA-seq reads and write output to a file
cutadapt,cutadapt_08,cutadapt_08_04,polite,Please remove polyA tail from single-end RNA-seq reads and write output to a file
cutadapt,cutadapt_08,cutadapt_08_05,sysadmin,Use cutadapt to remove polyA tail from single-end RNA-seq reads and write output to a file
cutadapt,cutadapt_08,cutadapt_08_06,goal_oriented,I want to remove polyA tail from single-end RNA-seq reads and write output to a file
cutadapt,cutadapt_08,cutadapt_08_07,expert,remove polyA tail single-end RNA-seq reads write output file
cutadapt,cutadapt_08,cutadapt_08_08,detailed,"I have data that I need to process: remove polyA tail from single-end RNA-seq reads and write output to a file, saving the result to a specified output file"
cutadapt,cutadapt_08,cutadapt_08_09,informal,"Hey, can you help me remove polyA tail from single-end RNA-seq reads and write output to a file?"
cutadapt,cutadapt_08,cutadapt_08_10,alternative,Write output to a file after remove polyA tail from single-end RNA-seq reads
cutadapt,cutadapt_09,cutadapt_09_01,original,trim Nextera transposase adapters from paired-end ATAC-seq data in quiet mode
cutadapt,cutadapt_09,cutadapt_09_02,beginner,How do I trim Nextera transposase adapters from paired-end ATAC-seq data in quiet mode?
cutadapt,cutadapt_09,cutadapt_09_03,student,I need to trim Nextera transposase adapters from paired-end ATAC-seq data in quiet mode
cutadapt,cutadapt_09,cutadapt_09_04,polite,Please trim Nextera transposase adapters from paired-end ATAC-seq data in quiet mode
cutadapt,cutadapt_09,cutadapt_09_05,sysadmin,Use cutadapt to trim Nextera transposase adapters from paired-end ATAC-seq data in quiet mode
cutadapt,cutadapt_09,cutadapt_09_06,goal_oriented,I want to trim Nextera transposase adapters from paired-end ATAC-seq data in quiet mode
cutadapt,cutadapt_09,cutadapt_09_07,expert,trim Nextera transposase adapters paired-end ATAC-seq data quiet mode
cutadapt,cutadapt_09,cutadapt_09_08,detailed,"I have data that I need to process: trim Nextera transposase adapters from paired-end ATAC-seq data in quiet mode, utilizing multiple CPU threads for speed, saving the result to a specified output file"
cutadapt,cutadapt_09,cutadapt_09_09,informal,"Hey, can you help me trim Nextera transposase adapters from paired-end ATAC-seq data in quiet mode?"
cutadapt,cutadapt_09,cutadapt_09_10,alternative,Perform: trim Nextera transposase adapters from paired-end ATAC-seq data in quiet mode
cutadapt,cutadapt_10,cutadapt_10_01,original,remove 5' primer from single-end amplicon reads with default parameters
cutadapt,cutadapt_10,cutadapt_10_02,beginner,How do I remove 5' primer from single-end amplicon reads with default parameters?
cutadapt,cutadapt_10,cutadapt_10_03,student,I need to remove 5' primer from single-end amplicon reads with default parameters
cutadapt,cutadapt_10,cutadapt_10_04,polite,Please remove 5' primer from single-end amplicon reads with default parameters
cutadapt,cutadapt_10,cutadapt_10_05,sysadmin,Use cutadapt to remove 5' primer from single-end amplicon reads with default parameters
cutadapt,cutadapt_10,cutadapt_10_06,goal_oriented,I want to remove 5' primer from single-end amplicon reads with default parameters
cutadapt,cutadapt_10,cutadapt_10_07,expert,remove 5' primer single-end amplicon reads default parameters
cutadapt,cutadapt_10,cutadapt_10_08,detailed,"I have data that I need to process: remove 5' primer from single-end amplicon reads with default parameters, saving the result to a specified output file"
cutadapt,cutadapt_10,cutadapt_10_09,informal,"Hey, can you help me remove 5' primer from single-end amplicon reads with default parameters?"
cutadapt,cutadapt_10,cutadapt_10_10,alternative,"With default parameters, remove 5' primer from single-end amplicon reads"
deeptools,deeptools_01,deeptools_01_01,original,generate normalized bigWig coverage track from a BAM file
deeptools,deeptools_01,deeptools_01_02,beginner,How do I generate normalized bigWig coverage track from a BAM file?
deeptools,deeptools_01,deeptools_01_03,student,I need to generate normalized bigWig coverage track from a BAM file
deeptools,deeptools_01,deeptools_01_04,polite,Please generate normalized bigWig coverage track from a BAM file
deeptools,deeptools_01,deeptools_01_05,sysadmin,Use deeptools to generate normalized bigWig coverage track from a BAM file
deeptools,deeptools_01,deeptools_01_06,goal_oriented,I want to generate normalized bigWig coverage track from a BAM file
deeptools,deeptools_01,deeptools_01_07,expert,generate normalized bigWig coverage track BAM file
deeptools,deeptools_01,deeptools_01_08,detailed,"I have data that I need to process: generate normalized bigWig coverage track from a BAM file, utilizing multiple CPU threads for speed, saving the result to a specified output file"
deeptools,deeptools_01,deeptools_01_09,informal,"Hey, can you help me generate normalized bigWig coverage track from a BAM file?"
deeptools,deeptools_01,deeptools_01_10,alternative,Perform: generate normalized bigWig coverage track from a BAM file
deeptools,deeptools_02,deeptools_02_01,original,create log2 ratio (ChIP/Input) bigWig track
deeptools,deeptools_02,deeptools_02_02,beginner,How do I create log2 ratio (ChIP/Input) bigWig track?
deeptools,deeptools_02,deeptools_02_03,student,I need to create log2 ratio (ChIP/Input) bigWig track
deeptools,deeptools_02,deeptools_02_04,polite,Please create log2 ratio (ChIP/Input) bigWig track
deeptools,deeptools_02,deeptools_02_05,sysadmin,Use deeptools to create log2 ratio (ChIP/Input) bigWig track
deeptools,deeptools_02,deeptools_02_06,goal_oriented,I want to create log2 ratio (ChIP/Input) bigWig track
deeptools,deeptools_02,deeptools_02_07,expert,create log2 ratio (ChIP/Input) bigWig track
deeptools,deeptools_02,deeptools_02_08,detailed,"I have data that I need to process: create log2 ratio (ChIP/Input) bigWig track, utilizing multiple CPU threads for speed, saving the result to a specified output file"
deeptools,deeptools_02,deeptools_02_09,informal,"Hey, can you help me create log2 ratio (ChIP/Input) bigWig track?"
deeptools,deeptools_02,deeptools_02_10,alternative,Perform: create log2 ratio (ChIP/Input) bigWig track
deeptools,deeptools_03,deeptools_03_01,original,compute signal matrix around TSS for heatmap visualization
deeptools,deeptools_03,deeptools_03_02,beginner,How do I compute signal matrix around TSS for heatmap visualization?
deeptools,deeptools_03,deeptools_03_03,student,I need to compute signal matrix around TSS for heatmap visualization
deeptools,deeptools_03,deeptools_03_04,polite,Please compute signal matrix around TSS for heatmap visualization
deeptools,deeptools_03,deeptools_03_05,sysadmin,Use deeptools to compute signal matrix around TSS for heatmap visualization
deeptools,deeptools_03,deeptools_03_06,goal_oriented,I want to compute signal matrix around TSS for heatmap visualization
deeptools,deeptools_03,deeptools_03_07,expert,compute signal matrix around TSS heatmap visualization
deeptools,deeptools_03,deeptools_03_08,detailed,"I have data that I need to process: compute signal matrix around TSS for heatmap visualization, utilizing multiple CPU threads for speed, saving the result to a specified output file"
deeptools,deeptools_03,deeptools_03_09,informal,"Hey, can you help me compute signal matrix around TSS for heatmap visualization?"
deeptools,deeptools_03,deeptools_03_10,alternative,Perform: compute signal matrix around TSS for heatmap visualization
deeptools,deeptools_04,deeptools_04_01,original,plot heatmap of signal around genomic regions
deeptools,deeptools_04,deeptools_04_02,beginner,How do I plot heatmap of signal around genomic regions?
deeptools,deeptools_04,deeptools_04_03,student,I need to plot heatmap of signal around genomic regions
deeptools,deeptools_04,deeptools_04_04,polite,Please plot heatmap of signal around genomic regions
deeptools,deeptools_04,deeptools_04_05,sysadmin,Use deeptools to plot heatmap of signal around genomic regions
deeptools,deeptools_04,deeptools_04_06,goal_oriented,I want to plot heatmap of signal around genomic regions
deeptools,deeptools_04,deeptools_04_07,expert,plot heatmap of signal around genomic regions
deeptools,deeptools_04,deeptools_04_08,detailed,I have data that I need to process: plot heatmap of signal around genomic regions
deeptools,deeptools_04,deeptools_04_09,informal,"Hey, can you help me plot heatmap of signal around genomic regions?"
deeptools,deeptools_04,deeptools_04_10,alternative,Perform: plot heatmap of signal around genomic regions
deeptools,deeptools_05,deeptools_05_01,original,compute read count correlation between multiple BAM files
deeptools,deeptools_05,deeptools_05_02,beginner,How do I compute read count correlation between multiple BAM files?
deeptools,deeptools_05,deeptools_05_03,student,I need to compute read count correlation between multiple BAM files
deeptools,deeptools_05,deeptools_05_04,polite,Please compute read count correlation between multiple BAM files
deeptools,deeptools_05,deeptools_05_05,sysadmin,Use deeptools to compute read count correlation between multiple BAM files
deeptools,deeptools_05,deeptools_05_06,goal_oriented,I want to compute read count correlation between multiple BAM files
deeptools,deeptools_05,deeptools_05_07,expert,compute read count correlation between multiple BAM files
deeptools,deeptools_05,deeptools_05_08,detailed,"I have data that I need to process: compute read count correlation between multiple BAM files, utilizing multiple CPU threads for speed, saving the result to a specified output file"
deeptools,deeptools_05,deeptools_05_09,informal,"Hey, can you help me compute read count correlation between multiple BAM files?"
deeptools,deeptools_05,deeptools_05_10,alternative,Perform: compute read count correlation between multiple BAM files
deeptools,deeptools_06,deeptools_06_01,original,generate ATAC-seq normalized bigWig with Tn5 shift correction
deeptools,deeptools_06,deeptools_06_02,beginner,How do I generate ATAC-seq normalized bigWig with Tn5 shift correction?
deeptools,deeptools_06,deeptools_06_03,student,I need to generate ATAC-seq normalized bigWig with Tn5 shift correction
deeptools,deeptools_06,deeptools_06_04,polite,Please generate ATAC-seq normalized bigWig with Tn5 shift correction
deeptools,deeptools_06,deeptools_06_05,sysadmin,Use deeptools to generate ATAC-seq normalized bigWig with Tn5 shift correction
deeptools,deeptools_06,deeptools_06_06,goal_oriented,I want to generate ATAC-seq normalized bigWig with Tn5 shift correction
deeptools,deeptools_06,deeptools_06_07,expert,generate ATAC-seq normalized bigWig Tn5 shift correction
deeptools,deeptools_06,deeptools_06_08,detailed,"I have data that I need to process: generate ATAC-seq normalized bigWig with Tn5 shift correction, utilizing multiple CPU threads for speed, saving the result to a specified output file"
deeptools,deeptools_06,deeptools_06_09,informal,"Hey, can you help me generate ATAC-seq normalized bigWig with Tn5 shift correction?"
deeptools,deeptools_06,deeptools_06_10,alternative,"With Tn5 shift correction, generate ATAC-seq normalized bigWig"
deeptools,deeptools_07,deeptools_07_01,original,generate normalized bigWig coverage track from a BAM file using multiple threads
deeptools,deeptools_07,deeptools_07_02,beginner,How do I generate normalized bigWig coverage track from a BAM file using multiple threads?
deeptools,deeptools_07,deeptools_07_03,student,I need to generate normalized bigWig coverage track from a BAM file using multiple threads
deeptools,deeptools_07,deeptools_07_04,polite,Please generate normalized bigWig coverage track from a BAM file using multiple threads
deeptools,deeptools_07,deeptools_07_05,sysadmin,Use deeptools to generate normalized bigWig coverage track from a BAM file using multiple threads
deeptools,deeptools_07,deeptools_07_06,goal_oriented,I want to generate normalized bigWig coverage track from a BAM file using multiple threads
deeptools,deeptools_07,deeptools_07_07,expert,generate normalized bigWig coverage track BAM file multiple threads
deeptools,deeptools_07,deeptools_07_08,detailed,"I have data that I need to process: generate normalized bigWig coverage track from a BAM file using multiple threads, utilizing multiple CPU threads for speed, saving the result to a specified output file"
deeptools,deeptools_07,deeptools_07_09,informal,"Hey, can you help me generate normalized bigWig coverage track from a BAM file using multiple threads?"
deeptools,deeptools_07,deeptools_07_10,alternative,Perform: generate normalized bigWig coverage track from a BAM file using multiple threads
deeptools,deeptools_08,deeptools_08_01,original,create log2 ratio (ChIP/Input) bigWig track and write output to a file
deeptools,deeptools_08,deeptools_08_02,beginner,How do I create log2 ratio (ChIP/Input) bigWig track and write output to a file?
deeptools,deeptools_08,deeptools_08_03,student,I need to create log2 ratio (ChIP/Input) bigWig track and write output to a file
deeptools,deeptools_08,deeptools_08_04,polite,Please create log2 ratio (ChIP/Input) bigWig track and write output to a file
deeptools,deeptools_08,deeptools_08_05,sysadmin,Use deeptools to create log2 ratio (ChIP/Input) bigWig track and write output to a file
deeptools,deeptools_08,deeptools_08_06,goal_oriented,I want to create log2 ratio (ChIP/Input) bigWig track and write output to a file
deeptools,deeptools_08,deeptools_08_07,expert,create log2 ratio (ChIP/Input) bigWig track write output file
deeptools,deeptools_08,deeptools_08_08,detailed,"I have data that I need to process: create log2 ratio (ChIP/Input) bigWig track and write output to a file, utilizing multiple CPU threads for speed, saving the result to a specified output file"
deeptools,deeptools_08,deeptools_08_09,informal,"Hey, can you help me create log2 ratio (ChIP/Input) bigWig track and write output to a file?"
deeptools,deeptools_08,deeptools_08_10,alternative,Write output to a file after create log2 ratio (ChIP/Input) bigWig track
deeptools,deeptools_09,deeptools_09_01,original,compute signal matrix around TSS for heatmap visualization in quiet mode
deeptools,deeptools_09,deeptools_09_02,beginner,How do I compute signal matrix around TSS for heatmap visualization in quiet mode?
deeptools,deeptools_09,deeptools_09_03,student,I need to compute signal matrix around TSS for heatmap visualization in quiet mode
deeptools,deeptools_09,deeptools_09_04,polite,Please compute signal matrix around TSS for heatmap visualization in quiet mode
deeptools,deeptools_09,deeptools_09_05,sysadmin,Use deeptools to compute signal matrix around TSS for heatmap visualization in quiet mode
deeptools,deeptools_09,deeptools_09_06,goal_oriented,I want to compute signal matrix around TSS for heatmap visualization in quiet mode
deeptools,deeptools_09,deeptools_09_07,expert,compute signal matrix around TSS heatmap visualization quiet mode
deeptools,deeptools_09,deeptools_09_08,detailed,"I have data that I need to process: compute signal matrix around TSS for heatmap visualization in quiet mode, utilizing multiple CPU threads for speed, saving the result to a specified output file"
deeptools,deeptools_09,deeptools_09_09,informal,"Hey, can you help me compute signal matrix around TSS for heatmap visualization in quiet mode?"
deeptools,deeptools_09,deeptools_09_10,alternative,Perform: compute signal matrix around TSS for heatmap visualization in quiet mode
deeptools,deeptools_10,deeptools_10_01,original,plot heatmap of signal around genomic regions with default parameters
deeptools,deeptools_10,deeptools_10_02,beginner,How do I plot heatmap of signal around genomic regions with default parameters?
deeptools,deeptools_10,deeptools_10_03,student,I need to plot heatmap of signal around genomic regions with default parameters
deeptools,deeptools_10,deeptools_10_04,polite,Please plot heatmap of signal around genomic regions with default parameters
deeptools,deeptools_10,deeptools_10_05,sysadmin,Use deeptools to plot heatmap of signal around genomic regions with default parameters
deeptools,deeptools_10,deeptools_10_06,goal_oriented,I want to plot heatmap of signal around genomic regions with default parameters
deeptools,deeptools_10,deeptools_10_07,expert,plot heatmap of signal around genomic regions default parameters
deeptools,deeptools_10,deeptools_10_08,detailed,I have data that I need to process: plot heatmap of signal around genomic regions with default parameters
deeptools,deeptools_10,deeptools_10_09,informal,"Hey, can you help me plot heatmap of signal around genomic regions with default parameters?"
deeptools,deeptools_10,deeptools_10_10,alternative,"With default parameters, plot heatmap of signal around genomic regions"
delly,delly_01,delly_01_01,original,call structural variants from a single sample
delly,delly_01,delly_01_02,beginner,How do I call structural variants from a single sample?
delly,delly_01,delly_01_03,student,I need to call structural variants from a single sample
delly,delly_01,delly_01_04,polite,Please call structural variants from a single sample
delly,delly_01,delly_01_05,sysadmin,Use delly to call structural variants from a single sample
delly,delly_01,delly_01_06,goal_oriented,I want to call structural variants from a single sample
delly,delly_01,delly_01_07,expert,call structural variants single sample
delly,delly_01,delly_01_08,detailed,"I have data that I need to process: call structural variants from a single sample, saving the result to a specified output file"
delly,delly_01,delly_01_09,informal,"Hey, can you help me call structural variants from a single sample?"
delly,delly_01,delly_01_10,alternative,Perform: call structural variants from a single sample
delly,delly_02,delly_02_01,original,call SVs with repetitive region exclusion list
delly,delly_02,delly_02_02,beginner,How do I call SVs with repetitive region exclusion list?
delly,delly_02,delly_02_03,student,I need to call SVs with repetitive region exclusion list
delly,delly_02,delly_02_04,polite,Please call SVs with repetitive region exclusion list
delly,delly_02,delly_02_05,sysadmin,Use delly to call SVs with repetitive region exclusion list
delly,delly_02,delly_02_06,goal_oriented,I want to call SVs with repetitive region exclusion list
delly,delly_02,delly_02_07,expert,call SVs repetitive region exclusion list
delly,delly_02,delly_02_08,detailed,"I have data that I need to process: call SVs with repetitive region exclusion list, saving the result to a specified output file"
delly,delly_02,delly_02_09,informal,"Hey, can you help me call SVs with repetitive region exclusion list?"
delly,delly_02,delly_02_10,alternative,"With repetitive region exclusion list, call SVs"
delly,delly_03,delly_03_01,original,call somatic SVs from tumor-normal pair
delly,delly_03,delly_03_02,beginner,How do I call somatic SVs from tumor-normal pair?
delly,delly_03,delly_03_03,student,I need to call somatic SVs from tumor-normal pair
delly,delly_03,delly_03_04,polite,Please call somatic SVs from tumor-normal pair
delly,delly_03,delly_03_05,sysadmin,Use delly to call somatic SVs from tumor-normal pair
delly,delly_03,delly_03_06,goal_oriented,I want to call somatic SVs from tumor-normal pair
delly,delly_03,delly_03_07,expert,call somatic SVs tumor-normal pair
delly,delly_03,delly_03_08,detailed,"I have data that I need to process: call somatic SVs from tumor-normal pair, saving the result to a specified output file"
delly,delly_03,delly_03_09,informal,"Hey, can you help me call somatic SVs from tumor-normal pair?"
delly,delly_03,delly_03_10,alternative,Perform: call somatic SVs from tumor-normal pair
delly,delly_04,delly_04_01,original,filter somatic SVs from DELLY output
delly,delly_04,delly_04_02,beginner,How do I filter somatic SVs from DELLY output?
delly,delly_04,delly_04_03,student,I need to filter somatic SVs from DELLY output
delly,delly_04,delly_04_04,polite,Please filter somatic SVs from DELLY output
delly,delly_04,delly_04_05,sysadmin,Use delly to filter somatic SVs from DELLY output
delly,delly_04,delly_04_06,goal_oriented,I want to filter somatic SVs from DELLY output
delly,delly_04,delly_04_07,expert,filter somatic SVs DELLY output
delly,delly_04,delly_04_08,detailed,"I have data that I need to process: filter somatic SVs from DELLY output, saving the result to a specified output file"
delly,delly_04,delly_04_09,informal,"Hey, can you help me filter somatic SVs from DELLY output?"
delly,delly_04,delly_04_10,alternative,Perform: filter somatic SVs from DELLY output
delly,delly_05,delly_05_01,original,merge per-sample SV calls for population analysis
delly,delly_05,delly_05_02,beginner,How do I merge per-sample SV calls for population analysis?
delly,delly_05,delly_05_03,student,I need to merge per-sample SV calls for population analysis
delly,delly_05,delly_05_04,polite,Please merge per-sample SV calls for population analysis
delly,delly_05,delly_05_05,sysadmin,Use delly to merge per-sample SV calls for population analysis
delly,delly_05,delly_05_06,goal_oriented,I want to merge per-sample SV calls for population analysis
delly,delly_05,delly_05_07,expert,merge per-sample SV calls population analysis
delly,delly_05,delly_05_08,detailed,"I have data that I need to process: merge per-sample SV calls for population analysis, saving the result to a specified output file"
delly,delly_05,delly_05_09,informal,"Hey, can you help me merge per-sample SV calls for population analysis?"
delly,delly_05,delly_05_10,alternative,Perform: merge per-sample SV calls for population analysis
delly,delly_06,delly_06_01,original,call structural variants from a single sample with verbose output
delly,delly_06,delly_06_02,beginner,How do I call structural variants from a single sample with verbose output?
delly,delly_06,delly_06_03,student,I need to call structural variants from a single sample with verbose output
delly,delly_06,delly_06_04,polite,Please call structural variants from a single sample with verbose output
delly,delly_06,delly_06_05,sysadmin,Use delly to call structural variants from a single sample with verbose output
delly,delly_06,delly_06_06,goal_oriented,I want to call structural variants from a single sample with verbose output
delly,delly_06,delly_06_07,expert,call structural variants single sample verbose output
delly,delly_06,delly_06_08,detailed,"I have data that I need to process: call structural variants from a single sample with verbose output, saving the result to a specified output file"
delly,delly_06,delly_06_09,informal,"Hey, can you help me call structural variants from a single sample with verbose output?"
delly,delly_06,delly_06_10,alternative,"With verbose output, call structural variants from a single sample"
delly,delly_07,delly_07_01,original,call SVs with repetitive region exclusion list using multiple threads
delly,delly_07,delly_07_02,beginner,How do I call SVs with repetitive region exclusion list using multiple threads?
delly,delly_07,delly_07_03,student,I need to call SVs with repetitive region exclusion list using multiple threads
delly,delly_07,delly_07_04,polite,Please call SVs with repetitive region exclusion list using multiple threads
delly,delly_07,delly_07_05,sysadmin,Use delly to call SVs with repetitive region exclusion list using multiple threads
delly,delly_07,delly_07_06,goal_oriented,I want to call SVs with repetitive region exclusion list using multiple threads
delly,delly_07,delly_07_07,expert,call SVs repetitive region exclusion list multiple threads
delly,delly_07,delly_07_08,detailed,"I have data that I need to process: call SVs with repetitive region exclusion list using multiple threads, utilizing multiple CPU threads for speed, saving the result to a specified output file"
delly,delly_07,delly_07_09,informal,"Hey, can you help me call SVs with repetitive region exclusion list using multiple threads?"
delly,delly_07,delly_07_10,alternative,"With repetitive region exclusion list using multiple threads, call SVs"
delly,delly_08,delly_08_01,original,call somatic SVs from tumor-normal pair and write output to a file
delly,delly_08,delly_08_02,beginner,How do I call somatic SVs from tumor-normal pair and write output to a file?
delly,delly_08,delly_08_03,student,I need to call somatic SVs from tumor-normal pair and write output to a file
delly,delly_08,delly_08_04,polite,Please call somatic SVs from tumor-normal pair and write output to a file
delly,delly_08,delly_08_05,sysadmin,Use delly to call somatic SVs from tumor-normal pair and write output to a file
delly,delly_08,delly_08_06,goal_oriented,I want to call somatic SVs from tumor-normal pair and write output to a file
delly,delly_08,delly_08_07,expert,call somatic SVs tumor-normal pair write output file
delly,delly_08,delly_08_08,detailed,"I have data that I need to process: call somatic SVs from tumor-normal pair and write output to a file, saving the result to a specified output file"
delly,delly_08,delly_08_09,informal,"Hey, can you help me call somatic SVs from tumor-normal pair and write output to a file?"
delly,delly_08,delly_08_10,alternative,Write output to a file after call somatic SVs from tumor-normal pair
delly,delly_09,delly_09_01,original,filter somatic SVs from DELLY output in quiet mode
delly,delly_09,delly_09_02,beginner,How do I filter somatic SVs from DELLY output in quiet mode?
delly,delly_09,delly_09_03,student,I need to filter somatic SVs from DELLY output in quiet mode
delly,delly_09,delly_09_04,polite,Please filter somatic SVs from DELLY output in quiet mode
delly,delly_09,delly_09_05,sysadmin,Use delly to filter somatic SVs from DELLY output in quiet mode
delly,delly_09,delly_09_06,goal_oriented,I want to filter somatic SVs from DELLY output in quiet mode
delly,delly_09,delly_09_07,expert,filter somatic SVs DELLY output quiet mode
delly,delly_09,delly_09_08,detailed,"I have data that I need to process: filter somatic SVs from DELLY output in quiet mode, saving the result to a specified output file"
delly,delly_09,delly_09_09,informal,"Hey, can you help me filter somatic SVs from DELLY output in quiet mode?"
delly,delly_09,delly_09_10,alternative,Perform: filter somatic SVs from DELLY output in quiet mode
delly,delly_10,delly_10_01,original,merge per-sample SV calls for population analysis with default parameters
delly,delly_10,delly_10_02,beginner,How do I merge per-sample SV calls for population analysis with default parameters?
delly,delly_10,delly_10_03,student,I need to merge per-sample SV calls for population analysis with default parameters
delly,delly_10,delly_10_04,polite,Please merge per-sample SV calls for population analysis with default parameters
delly,delly_10,delly_10_05,sysadmin,Use delly to merge per-sample SV calls for population analysis with default parameters
delly,delly_10,delly_10_06,goal_oriented,I want to merge per-sample SV calls for population analysis with default parameters
delly,delly_10,delly_10_07,expert,merge per-sample SV calls population analysis default parameters
delly,delly_10,delly_10_08,detailed,"I have data that I need to process: merge per-sample SV calls for population analysis with default parameters, saving the result to a specified output file"
delly,delly_10,delly_10_09,informal,"Hey, can you help me merge per-sample SV calls for population analysis with default parameters?"
delly,delly_10,delly_10_10,alternative,"With default parameters, merge per-sample SV calls for population analysis"
diamond,diamond_01,diamond_01_01,original,build a DIAMOND protein database from a FASTA file
diamond,diamond_01,diamond_01_02,beginner,How do I build a DIAMOND protein database from a FASTA file?
diamond,diamond_01,diamond_01_03,student,I need to build a DIAMOND protein database from a FASTA file
diamond,diamond_01,diamond_01_04,polite,Please build a DIAMOND protein database from a FASTA file
diamond,diamond_01,diamond_01_05,sysadmin,Use diamond to build a DIAMOND protein database from a FASTA file
diamond,diamond_01,diamond_01_06,goal_oriented,I want to build a DIAMOND protein database from a FASTA file
diamond,diamond_01,diamond_01_07,expert,build DIAMOND protein database FASTA file
diamond,diamond_01,diamond_01_08,detailed,"I have data that I need to process: build a DIAMOND protein database from a FASTA file, utilizing multiple CPU threads for speed"
diamond,diamond_01,diamond_01_09,informal,"Hey, can you help me build a DIAMOND protein database from a FASTA file?"
diamond,diamond_01,diamond_01_10,alternative,Perform: build a DIAMOND protein database from a FASTA file
diamond,diamond_02,diamond_02_01,original,search protein sequences against a DIAMOND database (blastp)
diamond,diamond_02,diamond_02_02,beginner,How do I search protein sequences against a DIAMOND database (blastp)?
diamond,diamond_02,diamond_02_03,student,I need to search protein sequences against a DIAMOND database (blastp)
diamond,diamond_02,diamond_02_04,polite,Please search protein sequences against a DIAMOND database (blastp)
diamond,diamond_02,diamond_02_05,sysadmin,Use diamond to search protein sequences against a DIAMOND database (blastp)
diamond,diamond_02,diamond_02_06,goal_oriented,I want to search protein sequences against a DIAMOND database (blastp)
diamond,diamond_02,diamond_02_07,expert,search protein sequences against DIAMOND database (blastp)
diamond,diamond_02,diamond_02_08,detailed,"I have data that I need to process: search protein sequences against a DIAMOND database (blastp), utilizing multiple CPU threads for speed, saving the result to a specified output file"
diamond,diamond_02,diamond_02_09,informal,"Hey, can you help me search protein sequences against a DIAMOND database (blastp)?"
diamond,diamond_02,diamond_02_10,alternative,Perform: search protein sequences against a DIAMOND database (blastp)
diamond,diamond_03,diamond_03_01,original,search DNA reads against protein database using blastx (translated search)
diamond,diamond_03,diamond_03_02,beginner,How do I search DNA reads against protein database using blastx (translated search)?
diamond,diamond_03,diamond_03_03,student,I need to search DNA reads against protein database using blastx (translated search)
diamond,diamond_03,diamond_03_04,polite,Please search DNA reads against protein database using blastx (translated search)
diamond,diamond_03,diamond_03_05,sysadmin,Use diamond to search DNA reads against protein database using blastx (translated search)
diamond,diamond_03,diamond_03_06,goal_oriented,I want to search DNA reads against protein database using blastx (translated search)
diamond,diamond_03,diamond_03_07,expert,search DNA reads against protein database blastx (translated search)
diamond,diamond_03,diamond_03_08,detailed,"I have data that I need to process: search DNA reads against protein database using blastx (translated search), utilizing multiple CPU threads for speed, saving the result to a specified output file"
diamond,diamond_03,diamond_03_09,informal,"Hey, can you help me search DNA reads against protein database using blastx (translated search)?"
diamond,diamond_03,diamond_03_10,alternative,Perform: search DNA reads against protein database using blastx (translated search)
diamond,diamond_04,diamond_04_01,original,sensitive mode search with custom output fields
diamond,diamond_04,diamond_04_02,beginner,How do I sensitive mode search with custom output fields?
diamond,diamond_04,diamond_04_03,student,I need to sensitive mode search with custom output fields
diamond,diamond_04,diamond_04_04,polite,Please sensitive mode search with custom output fields
diamond,diamond_04,diamond_04_05,sysadmin,Use diamond to sensitive mode search with custom output fields
diamond,diamond_04,diamond_04_06,goal_oriented,I want to sensitive mode search with custom output fields
diamond,diamond_04,diamond_04_07,expert,sensitive mode search custom output fields
diamond,diamond_04,diamond_04_08,detailed,"I have data that I need to process: sensitive mode search with custom output fields, utilizing multiple CPU threads for speed, saving the result to a specified output file"
diamond,diamond_04,diamond_04_09,informal,"Hey, can you help me sensitive mode search with custom output fields?"
diamond,diamond_04,diamond_04_10,alternative,"With custom output fields, sensitive mode search"
diamond,diamond_05,diamond_05_01,original,search with taxonomy-aware output for functional annotation
diamond,diamond_05,diamond_05_02,beginner,How do I search with taxonomy-aware output for functional annotation?
diamond,diamond_05,diamond_05_03,student,I need to search with taxonomy-aware output for functional annotation
diamond,diamond_05,diamond_05_04,polite,Please search with taxonomy-aware output for functional annotation
diamond,diamond_05,diamond_05_05,sysadmin,Use diamond to search with taxonomy-aware output for functional annotation
diamond,diamond_05,diamond_05_06,goal_oriented,I want to search with taxonomy-aware output for functional annotation
diamond,diamond_05,diamond_05_07,expert,search taxonomy-aware output functional annotation
diamond,diamond_05,diamond_05_08,detailed,"I have data that I need to process: search with taxonomy-aware output for functional annotation, utilizing multiple CPU threads for speed, saving the result to a specified output file"
diamond,diamond_05,diamond_05_09,informal,"Hey, can you help me search with taxonomy-aware output for functional annotation?"
diamond,diamond_05,diamond_05_10,alternative,"With taxonomy-aware output for functional annotation, search"
diamond,diamond_06,diamond_06_01,original,build a DIAMOND protein database from a FASTA file with verbose output
diamond,diamond_06,diamond_06_02,beginner,How do I build a DIAMOND protein database from a FASTA file with verbose output?
diamond,diamond_06,diamond_06_03,student,I need to build a DIAMOND protein database from a FASTA file with verbose output
diamond,diamond_06,diamond_06_04,polite,Please build a DIAMOND protein database from a FASTA file with verbose output
diamond,diamond_06,diamond_06_05,sysadmin,Use diamond to build a DIAMOND protein database from a FASTA file with verbose output
diamond,diamond_06,diamond_06_06,goal_oriented,I want to build a DIAMOND protein database from a FASTA file with verbose output
diamond,diamond_06,diamond_06_07,expert,build DIAMOND protein database FASTA file verbose output
diamond,diamond_06,diamond_06_08,detailed,"I have data that I need to process: build a DIAMOND protein database from a FASTA file with verbose output, utilizing multiple CPU threads for speed"
diamond,diamond_06,diamond_06_09,informal,"Hey, can you help me build a DIAMOND protein database from a FASTA file with verbose output?"
diamond,diamond_06,diamond_06_10,alternative,"With verbose output, build a DIAMOND protein database from a FASTA file"
diamond,diamond_07,diamond_07_01,original,search protein sequences against a DIAMOND database (blastp) using multiple threads
diamond,diamond_07,diamond_07_02,beginner,How do I search protein sequences against a DIAMOND database (blastp) using multiple threads?
diamond,diamond_07,diamond_07_03,student,I need to search protein sequences against a DIAMOND database (blastp) using multiple threads
diamond,diamond_07,diamond_07_04,polite,Please search protein sequences against a DIAMOND database (blastp) using multiple threads
diamond,diamond_07,diamond_07_05,sysadmin,Use diamond to search protein sequences against a DIAMOND database (blastp) using multiple threads
diamond,diamond_07,diamond_07_06,goal_oriented,I want to search protein sequences against a DIAMOND database (blastp) using multiple threads
diamond,diamond_07,diamond_07_07,expert,search protein sequences against DIAMOND database (blastp) multiple threads
diamond,diamond_07,diamond_07_08,detailed,"I have data that I need to process: search protein sequences against a DIAMOND database (blastp) using multiple threads, utilizing multiple CPU threads for speed, saving the result to a specified output file"
diamond,diamond_07,diamond_07_09,informal,"Hey, can you help me search protein sequences against a DIAMOND database (blastp) using multiple threads?"
diamond,diamond_07,diamond_07_10,alternative,Perform: search protein sequences against a DIAMOND database (blastp) using multiple threads
diamond,diamond_08,diamond_08_01,original,search DNA reads against protein database using blastx (translated search) and write output to a file
diamond,diamond_08,diamond_08_02,beginner,How do I search DNA reads against protein database using blastx (translated search) and write output to a file?
diamond,diamond_08,diamond_08_03,student,I need to search DNA reads against protein database using blastx (translated search) and write output to a file
diamond,diamond_08,diamond_08_04,polite,Please search DNA reads against protein database using blastx (translated search) and write output to a file
diamond,diamond_08,diamond_08_05,sysadmin,Use diamond to search DNA reads against protein database using blastx (translated search) and write output to a file
diamond,diamond_08,diamond_08_06,goal_oriented,I want to search DNA reads against protein database using blastx (translated search) and write output to a file
diamond,diamond_08,diamond_08_07,expert,search DNA reads against protein database blastx (translated search) write output file
diamond,diamond_08,diamond_08_08,detailed,"I have data that I need to process: search DNA reads against protein database using blastx (translated search) and write output to a file, utilizing multiple CPU threads for speed, saving the result to a specified output file"
diamond,diamond_08,diamond_08_09,informal,"Hey, can you help me search DNA reads against protein database using blastx (translated search) and write output to a file?"
diamond,diamond_08,diamond_08_10,alternative,Write output to a file after search DNA reads against protein database using blastx (translated search)
diamond,diamond_09,diamond_09_01,original,sensitive mode search with custom output fields in quiet mode
diamond,diamond_09,diamond_09_02,beginner,How do I sensitive mode search with custom output fields in quiet mode?
diamond,diamond_09,diamond_09_03,student,I need to sensitive mode search with custom output fields in quiet mode
diamond,diamond_09,diamond_09_04,polite,Please sensitive mode search with custom output fields in quiet mode
diamond,diamond_09,diamond_09_05,sysadmin,Use diamond to sensitive mode search with custom output fields in quiet mode
diamond,diamond_09,diamond_09_06,goal_oriented,I want to sensitive mode search with custom output fields in quiet mode
diamond,diamond_09,diamond_09_07,expert,sensitive mode search custom output fields quiet mode
diamond,diamond_09,diamond_09_08,detailed,"I have data that I need to process: sensitive mode search with custom output fields in quiet mode, utilizing multiple CPU threads for speed, saving the result to a specified output file"
diamond,diamond_09,diamond_09_09,informal,"Hey, can you help me sensitive mode search with custom output fields in quiet mode?"
diamond,diamond_09,diamond_09_10,alternative,"With custom output fields in quiet mode, sensitive mode search"
diamond,diamond_10,diamond_10_01,original,search with taxonomy-aware output for functional annotation with default parameters
diamond,diamond_10,diamond_10_02,beginner,How do I search with taxonomy-aware output for functional annotation with default parameters?
diamond,diamond_10,diamond_10_03,student,I need to search with taxonomy-aware output for functional annotation with default parameters
diamond,diamond_10,diamond_10_04,polite,Please search with taxonomy-aware output for functional annotation with default parameters
diamond,diamond_10,diamond_10_05,sysadmin,Use diamond to search with taxonomy-aware output for functional annotation with default parameters
diamond,diamond_10,diamond_10_06,goal_oriented,I want to search with taxonomy-aware output for functional annotation with default parameters
diamond,diamond_10,diamond_10_07,expert,search taxonomy-aware output functional annotation default parameters
diamond,diamond_10,diamond_10_08,detailed,"I have data that I need to process: search with taxonomy-aware output for functional annotation with default parameters, utilizing multiple CPU threads for speed, saving the result to a specified output file"
diamond,diamond_10,diamond_10_09,informal,"Hey, can you help me search with taxonomy-aware output for functional annotation with default parameters?"
diamond,diamond_10,diamond_10_10,alternative,"With taxonomy-aware output for functional annotation with default parameters, search"
fastp,fastp_01,fastp_01_01,original,quality trim and filter paired-end FASTQ reads with 8 threads
fastp,fastp_01,fastp_01_02,beginner,How do I quality trim and filter paired-end FASTQ reads with 8 threads?
fastp,fastp_01,fastp_01_03,student,I need to quality trim and filter paired-end FASTQ reads with 8 threads
fastp,fastp_01,fastp_01_04,polite,Please quality trim and filter paired-end FASTQ reads with 8 threads
fastp,fastp_01,fastp_01_05,sysadmin,Use fastp to quality trim and filter paired-end FASTQ reads with 8 threads
fastp,fastp_01,fastp_01_06,goal_oriented,I want to quality trim and filter paired-end FASTQ reads with 8 threads
fastp,fastp_01,fastp_01_07,expert,quality trim filter paired-end FASTQ reads 8 threads
fastp,fastp_01,fastp_01_08,detailed,"I have data that I need to process: quality trim and filter paired-end FASTQ reads with 8 threads, saving the result to a specified output file"
fastp,fastp_01,fastp_01_09,informal,"Hey, can you help me quality trim and filter paired-end FASTQ reads with 8 threads?"
fastp,fastp_01,fastp_01_10,alternative,Filter paired-end FASTQ reads with 8 threads after quality trim
fastp,fastp_02,fastp_02_01,original,trim adapters from single-end reads and filter reads shorter than 50 bp
fastp,fastp_02,fastp_02_02,beginner,How do I trim adapters from single-end reads and filter reads shorter than 50 bp?
fastp,fastp_02,fastp_02_03,student,I need to trim adapters from single-end reads and filter reads shorter than 50 bp
fastp,fastp_02,fastp_02_04,polite,Please trim adapters from single-end reads and filter reads shorter than 50 bp
fastp,fastp_02,fastp_02_05,sysadmin,Use fastp to trim adapters from single-end reads and filter reads shorter than 50 bp
fastp,fastp_02,fastp_02_06,goal_oriented,I want to trim adapters from single-end reads and filter reads shorter than 50 bp
fastp,fastp_02,fastp_02_07,expert,trim adapters single-end reads filter reads shorter than 50 bp
fastp,fastp_02,fastp_02_08,detailed,"I have data that I need to process: trim adapters from single-end reads and filter reads shorter than 50 bp, saving the result to a specified output file"
fastp,fastp_02,fastp_02_09,informal,"Hey, can you help me trim adapters from single-end reads and filter reads shorter than 50 bp?"
fastp,fastp_02,fastp_02_10,alternative,Filter reads shorter than 50 bp after trim adapters from single-end reads
fastp,fastp_03,fastp_03_01,original,quality trim paired-end reads and set minimum quality to 20
fastp,fastp_03,fastp_03_02,beginner,How do I quality trim paired-end reads and set minimum quality to 20?
fastp,fastp_03,fastp_03_03,student,I need to quality trim paired-end reads and set minimum quality to 20
fastp,fastp_03,fastp_03_04,polite,Please quality trim paired-end reads and set minimum quality to 20
fastp,fastp_03,fastp_03_05,sysadmin,Use fastp to quality trim paired-end reads and set minimum quality to 20
fastp,fastp_03,fastp_03_06,goal_oriented,I want to quality trim paired-end reads and set minimum quality to 20
fastp,fastp_03,fastp_03_07,expert,quality trim paired-end reads set minimum quality 20
fastp,fastp_03,fastp_03_08,detailed,"I have data that I need to process: quality trim paired-end reads and set minimum quality to 20, saving the result to a specified output file"
fastp,fastp_03,fastp_03_09,informal,"Hey, can you help me quality trim paired-end reads and set minimum quality to 20?"
fastp,fastp_03,fastp_03_10,alternative,Set minimum quality to 20 after quality trim paired-end reads
fastp,fastp_04,fastp_04_01,original,run fastp on paired-end RNA-seq data with polyA trimming
fastp,fastp_04,fastp_04_02,beginner,How do I run fastp on paired-end RNA-seq data with polyA trimming?
fastp,fastp_04,fastp_04_03,student,I need to run fastp on paired-end RNA-seq data with polyA trimming
fastp,fastp_04,fastp_04_04,polite,Please run fastp on paired-end RNA-seq data with polyA trimming
fastp,fastp_04,fastp_04_05,sysadmin,Use fastp to run fastp on paired-end RNA-seq data with polyA trimming
fastp,fastp_04,fastp_04_06,goal_oriented,I want to run fastp on paired-end RNA-seq data with polyA trimming
fastp,fastp_04,fastp_04_07,expert,run fastp on paired-end RNA-seq data polyA trimming
fastp,fastp_04,fastp_04_08,detailed,"I have data that I need to process: run fastp on paired-end RNA-seq data with polyA trimming, saving the result to a specified output file"
fastp,fastp_04,fastp_04_09,informal,"Hey, can you help me run fastp on paired-end RNA-seq data with polyA trimming?"
fastp,fastp_04,fastp_04_10,alternative,"With polyA trimming, run fastp on paired-end RNA-seq data"
fastp,fastp_05,fastp_05_01,original,"quality control only (no trimming, just generate the QC report)"
fastp,fastp_05,fastp_05_02,beginner,"How do I quality control only (no trimming, just generate the QC report)?"
fastp,fastp_05,fastp_05_03,student,"I need to quality control only (no trimming, just generate the QC report)"
fastp,fastp_05,fastp_05_04,polite,"Please quality control only (no trimming, just generate the QC report)"
fastp,fastp_05,fastp_05_05,sysadmin,"Use fastp to quality control only (no trimming, just generate the QC report)"
fastp,fastp_05,fastp_05_06,goal_oriented,"I want to quality control only (no trimming, just generate the QC report)"
fastp,fastp_05,fastp_05_07,expert,"quality control only (no trimming, just generate QC report)"
fastp,fastp_05,fastp_05_08,detailed,"I have data that I need to process: quality control only (no trimming, just generate the QC report), saving the result to a specified output file"
fastp,fastp_05,fastp_05_09,informal,"Hey, can you help me quality control only (no trimming, just generate the QC report)?"
fastp,fastp_05,fastp_05_10,alternative,"Perform: quality control only (no trimming, just generate the QC report)"
fastp,fastp_06,fastp_06_01,original,quality trim and filter paired-end FASTQ reads with 8 threads with verbose output
fastp,fastp_06,fastp_06_02,beginner,How do I quality trim and filter paired-end FASTQ reads with 8 threads with verbose output?
fastp,fastp_06,fastp_06_03,student,I need to quality trim and filter paired-end FASTQ reads with 8 threads with verbose output
fastp,fastp_06,fastp_06_04,polite,Please quality trim and filter paired-end FASTQ reads with 8 threads with verbose output
fastp,fastp_06,fastp_06_05,sysadmin,Use fastp to quality trim and filter paired-end FASTQ reads with 8 threads with verbose output
fastp,fastp_06,fastp_06_06,goal_oriented,I want to quality trim and filter paired-end FASTQ reads with 8 threads with verbose output
fastp,fastp_06,fastp_06_07,expert,quality trim filter paired-end FASTQ reads 8 threads verbose output
fastp,fastp_06,fastp_06_08,detailed,"I have data that I need to process: quality trim and filter paired-end FASTQ reads with 8 threads with verbose output, saving the result to a specified output file"
fastp,fastp_06,fastp_06_09,informal,"Hey, can you help me quality trim and filter paired-end FASTQ reads with 8 threads with verbose output?"
fastp,fastp_06,fastp_06_10,alternative,Filter paired-end FASTQ reads with 8 threads with verbose output after quality trim
fastp,fastp_07,fastp_07_01,original,trim adapters from single-end reads and filter reads shorter than 50 bp using multiple threads
fastp,fastp_07,fastp_07_02,beginner,How do I trim adapters from single-end reads and filter reads shorter than 50 bp using multiple threads?
fastp,fastp_07,fastp_07_03,student,I need to trim adapters from single-end reads and filter reads shorter than 50 bp using multiple threads
fastp,fastp_07,fastp_07_04,polite,Please trim adapters from single-end reads and filter reads shorter than 50 bp using multiple threads
fastp,fastp_07,fastp_07_05,sysadmin,Use fastp to trim adapters from single-end reads and filter reads shorter than 50 bp using multiple threads
fastp,fastp_07,fastp_07_06,goal_oriented,I want to trim adapters from single-end reads and filter reads shorter than 50 bp using multiple threads
fastp,fastp_07,fastp_07_07,expert,trim adapters single-end reads filter reads shorter than 50 bp multiple threads
fastp,fastp_07,fastp_07_08,detailed,"I have data that I need to process: trim adapters from single-end reads and filter reads shorter than 50 bp using multiple threads, saving the result to a specified output file"
fastp,fastp_07,fastp_07_09,informal,"Hey, can you help me trim adapters from single-end reads and filter reads shorter than 50 bp using multiple threads?"
fastp,fastp_07,fastp_07_10,alternative,Filter reads shorter than 50 bp using multiple threads after trim adapters from single-end reads
fastp,fastp_08,fastp_08_01,original,quality trim paired-end reads and set minimum quality to 20 and write output to a file
fastp,fastp_08,fastp_08_02,beginner,How do I quality trim paired-end reads and set minimum quality to 20 and write output to a file?
fastp,fastp_08,fastp_08_03,student,I need to quality trim paired-end reads and set minimum quality to 20 and write output to a file
fastp,fastp_08,fastp_08_04,polite,Please quality trim paired-end reads and set minimum quality to 20 and write output to a file
fastp,fastp_08,fastp_08_05,sysadmin,Use fastp to quality trim paired-end reads and set minimum quality to 20 and write output to a file
fastp,fastp_08,fastp_08_06,goal_oriented,I want to quality trim paired-end reads and set minimum quality to 20 and write output to a file
fastp,fastp_08,fastp_08_07,expert,quality trim paired-end reads set minimum quality 20 write output file
fastp,fastp_08,fastp_08_08,detailed,"I have data that I need to process: quality trim paired-end reads and set minimum quality to 20 and write output to a file, saving the result to a specified output file"
fastp,fastp_08,fastp_08_09,informal,"Hey, can you help me quality trim paired-end reads and set minimum quality to 20 and write output to a file?"
fastp,fastp_08,fastp_08_10,alternative,Set minimum quality to 20 and write output to a file after quality trim paired-end reads
fastp,fastp_09,fastp_09_01,original,run fastp on paired-end RNA-seq data with polyA trimming in quiet mode
fastp,fastp_09,fastp_09_02,beginner,How do I run fastp on paired-end RNA-seq data with polyA trimming in quiet mode?
fastp,fastp_09,fastp_09_03,student,I need to run fastp on paired-end RNA-seq data with polyA trimming in quiet mode
fastp,fastp_09,fastp_09_04,polite,Please run fastp on paired-end RNA-seq data with polyA trimming in quiet mode
fastp,fastp_09,fastp_09_05,sysadmin,Use fastp to run fastp on paired-end RNA-seq data with polyA trimming in quiet mode
fastp,fastp_09,fastp_09_06,goal_oriented,I want to run fastp on paired-end RNA-seq data with polyA trimming in quiet mode
fastp,fastp_09,fastp_09_07,expert,run fastp on paired-end RNA-seq data polyA trimming quiet mode
fastp,fastp_09,fastp_09_08,detailed,"I have data that I need to process: run fastp on paired-end RNA-seq data with polyA trimming in quiet mode, saving the result to a specified output file"
fastp,fastp_09,fastp_09_09,informal,"Hey, can you help me run fastp on paired-end RNA-seq data with polyA trimming in quiet mode?"
fastp,fastp_09,fastp_09_10,alternative,"With polyA trimming in quiet mode, run fastp on paired-end RNA-seq data"
fastp,fastp_10,fastp_10_01,original,"quality control only (no trimming, just generate the QC report) with default parameters"
fastp,fastp_10,fastp_10_02,beginner,"How do I quality control only (no trimming, just generate the QC report) with default parameters?"
fastp,fastp_10,fastp_10_03,student,"I need to quality control only (no trimming, just generate the QC report) with default parameters"
fastp,fastp_10,fastp_10_04,polite,"Please quality control only (no trimming, just generate the QC report) with default parameters"
fastp,fastp_10,fastp_10_05,sysadmin,"Use fastp to quality control only (no trimming, just generate the QC report) with default parameters"
fastp,fastp_10,fastp_10_06,goal_oriented,"I want to quality control only (no trimming, just generate the QC report) with default parameters"
fastp,fastp_10,fastp_10_07,expert,"quality control only (no trimming, just generate QC report) default parameters"
fastp,fastp_10,fastp_10_08,detailed,"I have data that I need to process: quality control only (no trimming, just generate the QC report) with default parameters, saving the result to a specified output file"
fastp,fastp_10,fastp_10_09,informal,"Hey, can you help me quality control only (no trimming, just generate the QC report) with default parameters?"
fastp,fastp_10,fastp_10_10,alternative,"With default parameters, quality control only (no trimming, just generate the QC report)"
fastq-screen,fastq-screen_01,fastq-screen_01_01,original,screen a FASTQ file against default databases
fastq-screen,fastq-screen_01,fastq-screen_01_02,beginner,How do I screen a FASTQ file against default databases?
fastq-screen,fastq-screen_01,fastq-screen_01_03,student,I need to screen a FASTQ file against default databases
fastq-screen,fastq-screen_01,fastq-screen_01_04,polite,Please screen a FASTQ file against default databases
fastq-screen,fastq-screen_01,fastq-screen_01_05,sysadmin,Use fastq-screen to screen a FASTQ file against default databases
fastq-screen,fastq-screen_01,fastq-screen_01_06,goal_oriented,I want to screen a FASTQ file against default databases
fastq-screen,fastq-screen_01,fastq-screen_01_07,expert,screen FASTQ file against default databases
fastq-screen,fastq-screen_01,fastq-screen_01_08,detailed,"I have data that I need to process: screen a FASTQ file against default databases, utilizing multiple CPU threads for speed"
fastq-screen,fastq-screen_01,fastq-screen_01_09,informal,"Hey, can you help me screen a FASTQ file against default databases?"
fastq-screen,fastq-screen_01,fastq-screen_01_10,alternative,Perform: screen a FASTQ file against default databases
fastq-screen,fastq-screen_02,fastq-screen_02_01,original,screen all reads (no subsampling) for thorough contamination check
fastq-screen,fastq-screen_02,fastq-screen_02_02,beginner,How do I screen all reads (no subsampling) for thorough contamination check?
fastq-screen,fastq-screen_02,fastq-screen_02_03,student,I need to screen all reads (no subsampling) for thorough contamination check
fastq-screen,fastq-screen_02,fastq-screen_02_04,polite,Please screen all reads (no subsampling) for thorough contamination check
fastq-screen,fastq-screen_02,fastq-screen_02_05,sysadmin,Use fastq-screen to screen all reads (no subsampling) for thorough contamination check
fastq-screen,fastq-screen_02,fastq-screen_02_06,goal_oriented,I want to screen all reads (no subsampling) for thorough contamination check
fastq-screen,fastq-screen_02,fastq-screen_02_07,expert,screen all reads (no subsampling) thorough contamination check
fastq-screen,fastq-screen_02,fastq-screen_02_08,detailed,"I have data that I need to process: screen all reads (no subsampling) for thorough contamination check, utilizing multiple CPU threads for speed"
fastq-screen,fastq-screen_02,fastq-screen_02_09,informal,"Hey, can you help me screen all reads (no subsampling) for thorough contamination check?"
fastq-screen,fastq-screen_02,fastq-screen_02_10,alternative,Perform: screen all reads (no subsampling) for thorough contamination check
fastq-screen,fastq-screen_03,fastq-screen_03_01,original,screen paired-end reads and report bisulfite alignment stats
fastq-screen,fastq-screen_03,fastq-screen_03_02,beginner,How do I screen paired-end reads and report bisulfite alignment stats?
fastq-screen,fastq-screen_03,fastq-screen_03_03,student,I need to screen paired-end reads and report bisulfite alignment stats
fastq-screen,fastq-screen_03,fastq-screen_03_04,polite,Please screen paired-end reads and report bisulfite alignment stats
fastq-screen,fastq-screen_03,fastq-screen_03_05,sysadmin,Use fastq-screen to screen paired-end reads and report bisulfite alignment stats
fastq-screen,fastq-screen_03,fastq-screen_03_06,goal_oriented,I want to screen paired-end reads and report bisulfite alignment stats
fastq-screen,fastq-screen_03,fastq-screen_03_07,expert,screen paired-end reads report bisulfite alignment stats
fastq-screen,fastq-screen_03,fastq-screen_03_08,detailed,"I have data that I need to process: screen paired-end reads and report bisulfite alignment stats, utilizing multiple CPU threads for speed"
fastq-screen,fastq-screen_03,fastq-screen_03_09,informal,"Hey, can you help me screen paired-end reads and report bisulfite alignment stats?"
fastq-screen,fastq-screen_03,fastq-screen_03_10,alternative,Report bisulfite alignment stats after screen paired-end reads
fastq-screen,fastq-screen_04,fastq-screen_04_01,original,screen reads and get only the table output without generating plots
fastq-screen,fastq-screen_04,fastq-screen_04_02,beginner,How do I screen reads and get only the table output without generating plots?
fastq-screen,fastq-screen_04,fastq-screen_04_03,student,I need to screen reads and get only the table output without generating plots
fastq-screen,fastq-screen_04,fastq-screen_04_04,polite,Please screen reads and get only the table output without generating plots
fastq-screen,fastq-screen_04,fastq-screen_04_05,sysadmin,Use fastq-screen to screen reads and get only the table output without generating plots
fastq-screen,fastq-screen_04,fastq-screen_04_06,goal_oriented,I want to screen reads and get only the table output without generating plots
fastq-screen,fastq-screen_04,fastq-screen_04_07,expert,screen reads get only table output without generating plots
fastq-screen,fastq-screen_04,fastq-screen_04_08,detailed,"I have data that I need to process: screen reads and get only the table output without generating plots, utilizing multiple CPU threads for speed"
fastq-screen,fastq-screen_04,fastq-screen_04_09,informal,"Hey, can you help me screen reads and get only the table output without generating plots?"
fastq-screen,fastq-screen_04,fastq-screen_04_10,alternative,Get only the table output without generating plots after screen reads
fastq-screen,fastq-screen_05,fastq-screen_05_01,original,add a custom database to the config and screen for mycoplasma contamination
fastq-screen,fastq-screen_05,fastq-screen_05_02,beginner,How do I add a custom database to the config and screen for mycoplasma contamination?
fastq-screen,fastq-screen_05,fastq-screen_05_03,student,I need to add a custom database to the config and screen for mycoplasma contamination
fastq-screen,fastq-screen_05,fastq-screen_05_04,polite,Please add a custom database to the config and screen for mycoplasma contamination
fastq-screen,fastq-screen_05,fastq-screen_05_05,sysadmin,Use fastq-screen to add a custom database to the config and screen for mycoplasma contamination
fastq-screen,fastq-screen_05,fastq-screen_05_06,goal_oriented,I want to add a custom database to the config and screen for mycoplasma contamination
fastq-screen,fastq-screen_05,fastq-screen_05_07,expert,add custom database config screen mycoplasma contamination
fastq-screen,fastq-screen_05,fastq-screen_05_08,detailed,"I have data that I need to process: add a custom database to the config and screen for mycoplasma contamination, utilizing multiple CPU threads for speed"
fastq-screen,fastq-screen_05,fastq-screen_05_09,informal,"Hey, can you help me add a custom database to the config and screen for mycoplasma contamination?"
fastq-screen,fastq-screen_05,fastq-screen_05_10,alternative,Screen for mycoplasma contamination after add a custom database to the config
fastq-screen,fastq-screen_06,fastq-screen_06_01,original,screen multiple samples in a loop and collect MultiQC report
fastq-screen,fastq-screen_06,fastq-screen_06_02,beginner,How do I screen multiple samples in a loop and collect MultiQC report?
fastq-screen,fastq-screen_06,fastq-screen_06_03,student,I need to screen multiple samples in a loop and collect MultiQC report
fastq-screen,fastq-screen_06,fastq-screen_06_04,polite,Please screen multiple samples in a loop and collect MultiQC report
fastq-screen,fastq-screen_06,fastq-screen_06_05,sysadmin,Use fastq-screen to screen multiple samples in a loop and collect MultiQC report
fastq-screen,fastq-screen_06,fastq-screen_06_06,goal_oriented,I want to screen multiple samples in a loop and collect MultiQC report
fastq-screen,fastq-screen_06,fastq-screen_06_07,expert,screen multiple samples loop collect MultiQC report
fastq-screen,fastq-screen_06,fastq-screen_06_08,detailed,"I have data that I need to process: screen multiple samples in a loop and collect MultiQC report, utilizing multiple CPU threads for speed, saving the result to a specified output file"
fastq-screen,fastq-screen_06,fastq-screen_06_09,informal,"Hey, can you help me screen multiple samples in a loop and collect MultiQC report?"
fastq-screen,fastq-screen_06,fastq-screen_06_10,alternative,Collect MultiQC report after screen multiple samples in a loop
fastq-screen,fastq-screen_07,fastq-screen_07_01,original,screen a FASTQ file against default databases using multiple threads
fastq-screen,fastq-screen_07,fastq-screen_07_02,beginner,How do I screen a FASTQ file against default databases using multiple threads?
fastq-screen,fastq-screen_07,fastq-screen_07_03,student,I need to screen a FASTQ file against default databases using multiple threads
fastq-screen,fastq-screen_07,fastq-screen_07_04,polite,Please screen a FASTQ file against default databases using multiple threads
fastq-screen,fastq-screen_07,fastq-screen_07_05,sysadmin,Use fastq-screen to screen a FASTQ file against default databases using multiple threads
fastq-screen,fastq-screen_07,fastq-screen_07_06,goal_oriented,I want to screen a FASTQ file against default databases using multiple threads
fastq-screen,fastq-screen_07,fastq-screen_07_07,expert,screen FASTQ file against default databases multiple threads
fastq-screen,fastq-screen_07,fastq-screen_07_08,detailed,"I have data that I need to process: screen a FASTQ file against default databases using multiple threads, utilizing multiple CPU threads for speed"
fastq-screen,fastq-screen_07,fastq-screen_07_09,informal,"Hey, can you help me screen a FASTQ file against default databases using multiple threads?"
fastq-screen,fastq-screen_07,fastq-screen_07_10,alternative,Perform: screen a FASTQ file against default databases using multiple threads
fastq-screen,fastq-screen_08,fastq-screen_08_01,original,screen all reads (no subsampling) for thorough contamination check and write output to a file
fastq-screen,fastq-screen_08,fastq-screen_08_02,beginner,How do I screen all reads (no subsampling) for thorough contamination check and write output to a file?
fastq-screen,fastq-screen_08,fastq-screen_08_03,student,I need to screen all reads (no subsampling) for thorough contamination check and write output to a file
fastq-screen,fastq-screen_08,fastq-screen_08_04,polite,Please screen all reads (no subsampling) for thorough contamination check and write output to a file
fastq-screen,fastq-screen_08,fastq-screen_08_05,sysadmin,Use fastq-screen to screen all reads (no subsampling) for thorough contamination check and write output to a file
fastq-screen,fastq-screen_08,fastq-screen_08_06,goal_oriented,I want to screen all reads (no subsampling) for thorough contamination check and write output to a file
fastq-screen,fastq-screen_08,fastq-screen_08_07,expert,screen all reads (no subsampling) thorough contamination check write output file
fastq-screen,fastq-screen_08,fastq-screen_08_08,detailed,"I have data that I need to process: screen all reads (no subsampling) for thorough contamination check and write output to a file, utilizing multiple CPU threads for speed, saving the result to a specified output file"
fastq-screen,fastq-screen_08,fastq-screen_08_09,informal,"Hey, can you help me screen all reads (no subsampling) for thorough contamination check and write output to a file?"
fastq-screen,fastq-screen_08,fastq-screen_08_10,alternative,Write output to a file after screen all reads (no subsampling) for thorough contamination check
fastq-screen,fastq-screen_09,fastq-screen_09_01,original,screen paired-end reads and report bisulfite alignment stats in quiet mode
fastq-screen,fastq-screen_09,fastq-screen_09_02,beginner,How do I screen paired-end reads and report bisulfite alignment stats in quiet mode?
fastq-screen,fastq-screen_09,fastq-screen_09_03,student,I need to screen paired-end reads and report bisulfite alignment stats in quiet mode
fastq-screen,fastq-screen_09,fastq-screen_09_04,polite,Please screen paired-end reads and report bisulfite alignment stats in quiet mode
fastq-screen,fastq-screen_09,fastq-screen_09_05,sysadmin,Use fastq-screen to screen paired-end reads and report bisulfite alignment stats in quiet mode
fastq-screen,fastq-screen_09,fastq-screen_09_06,goal_oriented,I want to screen paired-end reads and report bisulfite alignment stats in quiet mode
fastq-screen,fastq-screen_09,fastq-screen_09_07,expert,screen paired-end reads report bisulfite alignment stats quiet mode
fastq-screen,fastq-screen_09,fastq-screen_09_08,detailed,"I have data that I need to process: screen paired-end reads and report bisulfite alignment stats in quiet mode, utilizing multiple CPU threads for speed"
fastq-screen,fastq-screen_09,fastq-screen_09_09,informal,"Hey, can you help me screen paired-end reads and report bisulfite alignment stats in quiet mode?"
fastq-screen,fastq-screen_09,fastq-screen_09_10,alternative,Report bisulfite alignment stats in quiet mode after screen paired-end reads
fastq-screen,fastq-screen_10,fastq-screen_10_01,original,screen reads and get only the table output without generating plots with default parameters
fastq-screen,fastq-screen_10,fastq-screen_10_02,beginner,How do I screen reads and get only the table output without generating plots with default parameters?
fastq-screen,fastq-screen_10,fastq-screen_10_03,student,I need to screen reads and get only the table output without generating plots with default parameters
fastq-screen,fastq-screen_10,fastq-screen_10_04,polite,Please screen reads and get only the table output without generating plots with default parameters
fastq-screen,fastq-screen_10,fastq-screen_10_05,sysadmin,Use fastq-screen to screen reads and get only the table output without generating plots with default parameters
fastq-screen,fastq-screen_10,fastq-screen_10_06,goal_oriented,I want to screen reads and get only the table output without generating plots with default parameters
fastq-screen,fastq-screen_10,fastq-screen_10_07,expert,screen reads get only table output without generating plots default parameters
fastq-screen,fastq-screen_10,fastq-screen_10_08,detailed,"I have data that I need to process: screen reads and get only the table output without generating plots with default parameters, utilizing multiple CPU threads for speed"
fastq-screen,fastq-screen_10,fastq-screen_10_09,informal,"Hey, can you help me screen reads and get only the table output without generating plots with default parameters?"
fastq-screen,fastq-screen_10,fastq-screen_10_10,alternative,Get only the table output without generating plots with default parameters after screen reads
fastqc,fastqc_01,fastqc_01_01,original,run quality control on a single FASTQ file
fastqc,fastqc_01,fastqc_01_02,beginner,How do I run quality control on a single FASTQ file?
fastqc,fastqc_01,fastqc_01_03,student,I need to run quality control on a single FASTQ file
fastqc,fastqc_01,fastqc_01_04,polite,Please run quality control on a single FASTQ file
fastqc,fastqc_01,fastqc_01_05,sysadmin,Use fastqc to run quality control on a single FASTQ file
fastqc,fastqc_01,fastqc_01_06,goal_oriented,I want to run quality control on a single FASTQ file
fastqc,fastqc_01,fastqc_01_07,expert,run quality control on single FASTQ file
fastqc,fastqc_01,fastqc_01_08,detailed,"I have data that I need to process: run quality control on a single FASTQ file, saving the result to a specified output file"
fastqc,fastqc_01,fastqc_01_09,informal,"Hey, can you help me run quality control on a single FASTQ file?"
fastqc,fastqc_01,fastqc_01_10,alternative,Perform: run quality control on a single FASTQ file
fastqc,fastqc_02,fastqc_02_01,original,run quality control on paired-end FASTQ files using 4 threads
fastqc,fastqc_02,fastqc_02_02,beginner,How do I run quality control on paired-end FASTQ files using 4 threads?
fastqc,fastqc_02,fastqc_02_03,student,I need to run quality control on paired-end FASTQ files using 4 threads
fastqc,fastqc_02,fastqc_02_04,polite,Please run quality control on paired-end FASTQ files using 4 threads
fastqc,fastqc_02,fastqc_02_05,sysadmin,Use fastqc to run quality control on paired-end FASTQ files using 4 threads
fastqc,fastqc_02,fastqc_02_06,goal_oriented,I want to run quality control on paired-end FASTQ files using 4 threads
fastqc,fastqc_02,fastqc_02_07,expert,run quality control on paired-end FASTQ files 4 threads
fastqc,fastqc_02,fastqc_02_08,detailed,"I have data that I need to process: run quality control on paired-end FASTQ files using 4 threads, utilizing multiple CPU threads for speed, saving the result to a specified output file"
fastqc,fastqc_02,fastqc_02_09,informal,"Hey, can you help me run quality control on paired-end FASTQ files using 4 threads?"
fastqc,fastqc_02,fastqc_02_10,alternative,Perform: run quality control on paired-end FASTQ files using 4 threads
fastqc,fastqc_03,fastqc_03_01,original,run quality control on multiple samples and keep zip files without extracting
fastqc,fastqc_03,fastqc_03_02,beginner,How do I run quality control on multiple samples and keep zip files without extracting?
fastqc,fastqc_03,fastqc_03_03,student,I need to run quality control on multiple samples and keep zip files without extracting
fastqc,fastqc_03,fastqc_03_04,polite,Please run quality control on multiple samples and keep zip files without extracting
fastqc,fastqc_03,fastqc_03_05,sysadmin,Use fastqc to run quality control on multiple samples and keep zip files without extracting
fastqc,fastqc_03,fastqc_03_06,goal_oriented,I want to run quality control on multiple samples and keep zip files without extracting
fastqc,fastqc_03,fastqc_03_07,expert,run quality control on multiple samples keep zip files without extracting
fastqc,fastqc_03,fastqc_03_08,detailed,"I have data that I need to process: run quality control on multiple samples and keep zip files without extracting, utilizing multiple CPU threads for speed, saving the result to a specified output file"
fastqc,fastqc_03,fastqc_03_09,informal,"Hey, can you help me run quality control on multiple samples and keep zip files without extracting?"
fastqc,fastqc_03,fastqc_03_10,alternative,Keep zip files without extracting after run quality control on multiple samples
fastqc,fastqc_04,fastqc_04_01,original,run fastqc on a BAM file
fastqc,fastqc_04,fastqc_04_02,beginner,How do I run fastqc on a BAM file?
fastqc,fastqc_04,fastqc_04_03,student,I need to run fastqc on a BAM file
fastqc,fastqc_04,fastqc_04_04,polite,Please run fastqc on a BAM file
fastqc,fastqc_04,fastqc_04_05,sysadmin,Use fastqc to run fastqc on a BAM file
fastqc,fastqc_04,fastqc_04_06,goal_oriented,I want to run fastqc on a BAM file
fastqc,fastqc_04,fastqc_04_07,expert,run fastqc on BAM file
fastqc,fastqc_04,fastqc_04_08,detailed,"I have data that I need to process: run fastqc on a BAM file, utilizing multiple CPU threads for speed, saving the result to a specified output file"
fastqc,fastqc_04,fastqc_04_09,informal,"Hey, can you help me run fastqc on a BAM file?"
fastqc,fastqc_04,fastqc_04_10,alternative,Perform: run fastqc on a BAM file
fastqc,fastqc_05,fastqc_05_01,original,run fastqc with custom adapter sequences and format specification
fastqc,fastqc_05,fastqc_05_02,beginner,How do I run fastqc with custom adapter sequences and format specification?
fastqc,fastqc_05,fastqc_05_03,student,I need to run fastqc with custom adapter sequences and format specification
fastqc,fastqc_05,fastqc_05_04,polite,Please run fastqc with custom adapter sequences and format specification
fastqc,fastqc_05,fastqc_05_05,sysadmin,Use fastqc to run fastqc with custom adapter sequences and format specification
fastqc,fastqc_05,fastqc_05_06,goal_oriented,I want to run fastqc with custom adapter sequences and format specification
fastqc,fastqc_05,fastqc_05_07,expert,run fastqc custom adapter sequences format specification
fastqc,fastqc_05,fastqc_05_08,detailed,"I have data that I need to process: run fastqc with custom adapter sequences and format specification, utilizing multiple CPU threads for speed, saving the result to a specified output file"
fastqc,fastqc_05,fastqc_05_09,informal,"Hey, can you help me run fastqc with custom adapter sequences and format specification?"
fastqc,fastqc_05,fastqc_05_10,alternative,Format specification after run fastqc with custom adapter sequences
fastqc,fastqc_06,fastqc_06_01,original,run quality control on a single FASTQ file with verbose output
fastqc,fastqc_06,fastqc_06_02,beginner,How do I run quality control on a single FASTQ file with verbose output?
fastqc,fastqc_06,fastqc_06_03,student,I need to run quality control on a single FASTQ file with verbose output
fastqc,fastqc_06,fastqc_06_04,polite,Please run quality control on a single FASTQ file with verbose output
fastqc,fastqc_06,fastqc_06_05,sysadmin,Use fastqc to run quality control on a single FASTQ file with verbose output
fastqc,fastqc_06,fastqc_06_06,goal_oriented,I want to run quality control on a single FASTQ file with verbose output
fastqc,fastqc_06,fastqc_06_07,expert,run quality control on single FASTQ file verbose output
fastqc,fastqc_06,fastqc_06_08,detailed,"I have data that I need to process: run quality control on a single FASTQ file with verbose output, saving the result to a specified output file"
fastqc,fastqc_06,fastqc_06_09,informal,"Hey, can you help me run quality control on a single FASTQ file with verbose output?"
fastqc,fastqc_06,fastqc_06_10,alternative,"With verbose output, run quality control on a single FASTQ file"
fastqc,fastqc_07,fastqc_07_01,original,run quality control on paired-end FASTQ files using 4 threads using multiple threads
fastqc,fastqc_07,fastqc_07_02,beginner,How do I run quality control on paired-end FASTQ files using 4 threads using multiple threads?
fastqc,fastqc_07,fastqc_07_03,student,I need to run quality control on paired-end FASTQ files using 4 threads using multiple threads
fastqc,fastqc_07,fastqc_07_04,polite,Please run quality control on paired-end FASTQ files using 4 threads using multiple threads
fastqc,fastqc_07,fastqc_07_05,sysadmin,Use fastqc to run quality control on paired-end FASTQ files using 4 threads using multiple threads
fastqc,fastqc_07,fastqc_07_06,goal_oriented,I want to run quality control on paired-end FASTQ files using 4 threads using multiple threads
fastqc,fastqc_07,fastqc_07_07,expert,run quality control on paired-end FASTQ files 4 threads multiple threads
fastqc,fastqc_07,fastqc_07_08,detailed,"I have data that I need to process: run quality control on paired-end FASTQ files using 4 threads using multiple threads, utilizing multiple CPU threads for speed, saving the result to a specified output file"
fastqc,fastqc_07,fastqc_07_09,informal,"Hey, can you help me run quality control on paired-end FASTQ files using 4 threads using multiple threads?"
fastqc,fastqc_07,fastqc_07_10,alternative,Perform: run quality control on paired-end FASTQ files using 4 threads using multiple threads
fastqc,fastqc_08,fastqc_08_01,original,run quality control on multiple samples and keep zip files without extracting and write output to a file
fastqc,fastqc_08,fastqc_08_02,beginner,How do I run quality control on multiple samples and keep zip files without extracting and write output to a file?
fastqc,fastqc_08,fastqc_08_03,student,I need to run quality control on multiple samples and keep zip files without extracting and write output to a file
fastqc,fastqc_08,fastqc_08_04,polite,Please run quality control on multiple samples and keep zip files without extracting and write output to a file
fastqc,fastqc_08,fastqc_08_05,sysadmin,Use fastqc to run quality control on multiple samples and keep zip files without extracting and write output to a file
fastqc,fastqc_08,fastqc_08_06,goal_oriented,I want to run quality control on multiple samples and keep zip files without extracting and write output to a file
fastqc,fastqc_08,fastqc_08_07,expert,run quality control on multiple samples keep zip files without extracting write output file
fastqc,fastqc_08,fastqc_08_08,detailed,"I have data that I need to process: run quality control on multiple samples and keep zip files without extracting and write output to a file, utilizing multiple CPU threads for speed, saving the result to a specified output file"
fastqc,fastqc_08,fastqc_08_09,informal,"Hey, can you help me run quality control on multiple samples and keep zip files without extracting and write output to a file?"
fastqc,fastqc_08,fastqc_08_10,alternative,Keep zip files without extracting and write output to a file after run quality control on multiple samples
fastqc,fastqc_09,fastqc_09_01,original,run fastqc on a BAM file in quiet mode
fastqc,fastqc_09,fastqc_09_02,beginner,How do I run fastqc on a BAM file in quiet mode?
fastqc,fastqc_09,fastqc_09_03,student,I need to run fastqc on a BAM file in quiet mode
fastqc,fastqc_09,fastqc_09_04,polite,Please run fastqc on a BAM file in quiet mode
fastqc,fastqc_09,fastqc_09_05,sysadmin,Use fastqc to run fastqc on a BAM file in quiet mode
fastqc,fastqc_09,fastqc_09_06,goal_oriented,I want to run fastqc on a BAM file in quiet mode
fastqc,fastqc_09,fastqc_09_07,expert,run fastqc on BAM file quiet mode
fastqc,fastqc_09,fastqc_09_08,detailed,"I have data that I need to process: run fastqc on a BAM file in quiet mode, utilizing multiple CPU threads for speed, saving the result to a specified output file"
fastqc,fastqc_09,fastqc_09_09,informal,"Hey, can you help me run fastqc on a BAM file in quiet mode?"
fastqc,fastqc_09,fastqc_09_10,alternative,Perform: run fastqc on a BAM file in quiet mode
fastqc,fastqc_10,fastqc_10_01,original,run fastqc with custom adapter sequences and format specification with default parameters
fastqc,fastqc_10,fastqc_10_02,beginner,How do I run fastqc with custom adapter sequences and format specification with default parameters?
fastqc,fastqc_10,fastqc_10_03,student,I need to run fastqc with custom adapter sequences and format specification with default parameters
fastqc,fastqc_10,fastqc_10_04,polite,Please run fastqc with custom adapter sequences and format specification with default parameters
fastqc,fastqc_10,fastqc_10_05,sysadmin,Use fastqc to run fastqc with custom adapter sequences and format specification with default parameters
fastqc,fastqc_10,fastqc_10_06,goal_oriented,I want to run fastqc with custom adapter sequences and format specification with default parameters
fastqc,fastqc_10,fastqc_10_07,expert,run fastqc custom adapter sequences format specification default parameters
fastqc,fastqc_10,fastqc_10_08,detailed,"I have data that I need to process: run fastqc with custom adapter sequences and format specification with default parameters, utilizing multiple CPU threads for speed, saving the result to a specified output file"
fastqc,fastqc_10,fastqc_10_09,informal,"Hey, can you help me run fastqc with custom adapter sequences and format specification with default parameters?"
fastqc,fastqc_10,fastqc_10_10,alternative,Format specification with default parameters after run fastqc with custom adapter sequences
fasttree,fasttree_01,fasttree_01_01,original,infer phylogenetic tree from nucleotide alignment
fasttree,fasttree_01,fasttree_01_02,beginner,How do I infer phylogenetic tree from nucleotide alignment?
fasttree,fasttree_01,fasttree_01_03,student,I need to infer phylogenetic tree from nucleotide alignment
fasttree,fasttree_01,fasttree_01_04,polite,Please infer phylogenetic tree from nucleotide alignment
fasttree,fasttree_01,fasttree_01_05,sysadmin,Use fasttree to infer phylogenetic tree from nucleotide alignment
fasttree,fasttree_01,fasttree_01_06,goal_oriented,I want to infer phylogenetic tree from nucleotide alignment
fasttree,fasttree_01,fasttree_01_07,expert,infer phylogenetic tree nucleotide alignment
fasttree,fasttree_01,fasttree_01_08,detailed,I have data that I need to process: infer phylogenetic tree from nucleotide alignment
fasttree,fasttree_01,fasttree_01_09,informal,"Hey, can you help me infer phylogenetic tree from nucleotide alignment?"
fasttree,fasttree_01,fasttree_01_10,alternative,Perform: infer phylogenetic tree from nucleotide alignment
fasttree,fasttree_02,fasttree_02_01,original,infer phylogenetic tree from protein alignment
fasttree,fasttree_02,fasttree_02_02,beginner,How do I infer phylogenetic tree from protein alignment?
fasttree,fasttree_02,fasttree_02_03,student,I need to infer phylogenetic tree from protein alignment
fasttree,fasttree_02,fasttree_02_04,polite,Please infer phylogenetic tree from protein alignment
fasttree,fasttree_02,fasttree_02_05,sysadmin,Use fasttree to infer phylogenetic tree from protein alignment
fasttree,fasttree_02,fasttree_02_06,goal_oriented,I want to infer phylogenetic tree from protein alignment
fasttree,fasttree_02,fasttree_02_07,expert,infer phylogenetic tree protein alignment
fasttree,fasttree_02,fasttree_02_08,detailed,I have data that I need to process: infer phylogenetic tree from protein alignment
fasttree,fasttree_02,fasttree_02_09,informal,"Hey, can you help me infer phylogenetic tree from protein alignment?"
fasttree,fasttree_02,fasttree_02_10,alternative,Perform: infer phylogenetic tree from protein alignment
fasttree,fasttree_03,fasttree_03_01,original,infer tree with WAG protein substitution model
fasttree,fasttree_03,fasttree_03_02,beginner,How do I infer tree with WAG protein substitution model?
fasttree,fasttree_03,fasttree_03_03,student,I need to infer tree with WAG protein substitution model
fasttree,fasttree_03,fasttree_03_04,polite,Please infer tree with WAG protein substitution model
fasttree,fasttree_03,fasttree_03_05,sysadmin,Use fasttree to infer tree with WAG protein substitution model
fasttree,fasttree_03,fasttree_03_06,goal_oriented,I want to infer tree with WAG protein substitution model
fasttree,fasttree_03,fasttree_03_07,expert,infer tree WAG protein substitution model
fasttree,fasttree_03,fasttree_03_08,detailed,I have data that I need to process: infer tree with WAG protein substitution model
fasttree,fasttree_03,fasttree_03_09,informal,"Hey, can you help me infer tree with WAG protein substitution model?"
fasttree,fasttree_03,fasttree_03_10,alternative,"With WAG protein substitution model, infer tree"
fasttree,fasttree_04,fasttree_04_01,original,infer tree with local support values
fasttree,fasttree_04,fasttree_04_02,beginner,How do I infer tree with local support values?
fasttree,fasttree_04,fasttree_04_03,student,I need to infer tree with local support values
fasttree,fasttree_04,fasttree_04_04,polite,Please infer tree with local support values
fasttree,fasttree_04,fasttree_04_05,sysadmin,Use fasttree to infer tree with local support values
fasttree,fasttree_04,fasttree_04_06,goal_oriented,I want to infer tree with local support values
fasttree,fasttree_04,fasttree_04_07,expert,infer tree local support values
fasttree,fasttree_04,fasttree_04_08,detailed,I have data that I need to process: infer tree with local support values
fasttree,fasttree_04,fasttree_04_09,informal,"Hey, can you help me infer tree with local support values?"
fasttree,fasttree_04,fasttree_04_10,alternative,"With local support values, infer tree"
fasttree,fasttree_05,fasttree_05_01,original,infer tree using multithreaded FastTreeMP
fasttree,fasttree_05,fasttree_05_02,beginner,How do I infer tree using multithreaded FastTreeMP?
fasttree,fasttree_05,fasttree_05_03,student,I need to infer tree using multithreaded FastTreeMP
fasttree,fasttree_05,fasttree_05_04,polite,Please infer tree using multithreaded FastTreeMP
fasttree,fasttree_05,fasttree_05_05,sysadmin,Use fasttree to infer tree using multithreaded FastTreeMP
fasttree,fasttree_05,fasttree_05_06,goal_oriented,I want to infer tree using multithreaded FastTreeMP
fasttree,fasttree_05,fasttree_05_07,expert,infer tree multithreaded FastTreeMP
fasttree,fasttree_05,fasttree_05_08,detailed,I have data that I need to process: infer tree using multithreaded FastTreeMP
fasttree,fasttree_05,fasttree_05_09,informal,"Hey, can you help me infer tree using multithreaded FastTreeMP?"
fasttree,fasttree_05,fasttree_05_10,alternative,Perform: infer tree using multithreaded FastTreeMP
fasttree,fasttree_06,fasttree_06_01,original,infer protein tree with LG substitution model
fasttree,fasttree_06,fasttree_06_02,beginner,How do I infer protein tree with LG substitution model?
fasttree,fasttree_06,fasttree_06_03,student,I need to infer protein tree with LG substitution model
fasttree,fasttree_06,fasttree_06_04,polite,Please infer protein tree with LG substitution model
fasttree,fasttree_06,fasttree_06_05,sysadmin,Use fasttree to infer protein tree with LG substitution model
fasttree,fasttree_06,fasttree_06_06,goal_oriented,I want to infer protein tree with LG substitution model
fasttree,fasttree_06,fasttree_06_07,expert,infer protein tree LG substitution model
fasttree,fasttree_06,fasttree_06_08,detailed,I have data that I need to process: infer protein tree with LG substitution model
fasttree,fasttree_06,fasttree_06_09,informal,"Hey, can you help me infer protein tree with LG substitution model?"
fasttree,fasttree_06,fasttree_06_10,alternative,"With LG substitution model, infer protein tree"
fasttree,fasttree_07,fasttree_07_01,original,run faster but less thorough tree search
fasttree,fasttree_07,fasttree_07_02,beginner,How do I run faster but less thorough tree search?
fasttree,fasttree_07,fasttree_07_03,student,I need to run faster but less thorough tree search
fasttree,fasttree_07,fasttree_07_04,polite,Please run faster but less thorough tree search
fasttree,fasttree_07,fasttree_07_05,sysadmin,Use fasttree to run faster but less thorough tree search
fasttree,fasttree_07,fasttree_07_06,goal_oriented,I want to run faster but less thorough tree search
fasttree,fasttree_07,fasttree_07_07,expert,run faster but less thorough tree search
fasttree,fasttree_07,fasttree_07_08,detailed,I have data that I need to process: run faster but less thorough tree search
fasttree,fasttree_07,fasttree_07_09,informal,"Hey, can you help me run faster but less thorough tree search?"
fasttree,fasttree_07,fasttree_07_10,alternative,Perform: run faster but less thorough tree search
fasttree,fasttree_08,fasttree_08_01,original,infer tree with gamma-distributed rate variation
fasttree,fasttree_08,fasttree_08_02,beginner,How do I infer tree with gamma-distributed rate variation?
fasttree,fasttree_08,fasttree_08_03,student,I need to infer tree with gamma-distributed rate variation
fasttree,fasttree_08,fasttree_08_04,polite,Please infer tree with gamma-distributed rate variation
fasttree,fasttree_08,fasttree_08_05,sysadmin,Use fasttree to infer tree with gamma-distributed rate variation
fasttree,fasttree_08,fasttree_08_06,goal_oriented,I want to infer tree with gamma-distributed rate variation
fasttree,fasttree_08,fasttree_08_07,expert,infer tree gamma-distributed rate variation
fasttree,fasttree_08,fasttree_08_08,detailed,I have data that I need to process: infer tree with gamma-distributed rate variation
fasttree,fasttree_08,fasttree_08_09,informal,"Hey, can you help me infer tree with gamma-distributed rate variation?"
fasttree,fasttree_08,fasttree_08_10,alternative,"With gamma-distributed rate variation, infer tree"
fasttree,fasttree_09,fasttree_09_01,original,infer tree from PHYLIP format input
fasttree,fasttree_09,fasttree_09_02,beginner,How do I infer tree from PHYLIP format input?
fasttree,fasttree_09,fasttree_09_03,student,I need to infer tree from PHYLIP format input
fasttree,fasttree_09,fasttree_09_04,polite,Please infer tree from PHYLIP format input
fasttree,fasttree_09,fasttree_09_05,sysadmin,Use fasttree to infer tree from PHYLIP format input
fasttree,fasttree_09,fasttree_09_06,goal_oriented,I want to infer tree from PHYLIP format input
fasttree,fasttree_09,fasttree_09_07,expert,infer tree PHYLIP format input
fasttree,fasttree_09,fasttree_09_08,detailed,I have data that I need to process: infer tree from PHYLIP format input
fasttree,fasttree_09,fasttree_09_09,informal,"Hey, can you help me infer tree from PHYLIP format input?"
fasttree,fasttree_09,fasttree_09_10,alternative,Perform: infer tree from PHYLIP format input
fasttree,fasttree_10,fasttree_10_01,original,infer tree with more thorough nearest-neighbor interchange search
fasttree,fasttree_10,fasttree_10_02,beginner,How do I infer tree with more thorough nearest-neighbor interchange search?
fasttree,fasttree_10,fasttree_10_03,student,I need to infer tree with more thorough nearest-neighbor interchange search
fasttree,fasttree_10,fasttree_10_04,polite,Please infer tree with more thorough nearest-neighbor interchange search
fasttree,fasttree_10,fasttree_10_05,sysadmin,Use fasttree to infer tree with more thorough nearest-neighbor interchange search
fasttree,fasttree_10,fasttree_10_06,goal_oriented,I want to infer tree with more thorough nearest-neighbor interchange search
fasttree,fasttree_10,fasttree_10_07,expert,infer tree more thorough nearest-neighbor interchange search
fasttree,fasttree_10,fasttree_10_08,detailed,I have data that I need to process: infer tree with more thorough nearest-neighbor interchange search
fasttree,fasttree_10,fasttree_10_09,informal,"Hey, can you help me infer tree with more thorough nearest-neighbor interchange search?"
fasttree,fasttree_10,fasttree_10_10,alternative,"With more thorough nearest-neighbor interchange search, infer tree"
featurecounts,featurecounts_01,featurecounts_01_01,original,count reads per gene for paired-end RNA-seq with reverse-strand library
featurecounts,featurecounts_01,featurecounts_01_02,beginner,How do I count reads per gene for paired-end RNA-seq with reverse-strand library?
featurecounts,featurecounts_01,featurecounts_01_03,student,I need to count reads per gene for paired-end RNA-seq with reverse-strand library
featurecounts,featurecounts_01,featurecounts_01_04,polite,Please count reads per gene for paired-end RNA-seq with reverse-strand library
featurecounts,featurecounts_01,featurecounts_01_05,sysadmin,Use featurecounts to count reads per gene for paired-end RNA-seq with reverse-strand library
featurecounts,featurecounts_01,featurecounts_01_06,goal_oriented,I want to count reads per gene for paired-end RNA-seq with reverse-strand library
featurecounts,featurecounts_01,featurecounts_01_07,expert,count reads per gene paired-end RNA-seq reverse-strand library
featurecounts,featurecounts_01,featurecounts_01_08,detailed,"I have data that I need to process: count reads per gene for paired-end RNA-seq with reverse-strand library, utilizing multiple CPU threads for speed, saving the result to a specified output file"
featurecounts,featurecounts_01,featurecounts_01_09,informal,"Hey, can you help me count reads per gene for paired-end RNA-seq with reverse-strand library?"
featurecounts,featurecounts_01,featurecounts_01_10,alternative,"With reverse-strand library, count reads per gene for paired-end RNA-seq"
featurecounts,featurecounts_02,featurecounts_02_01,original,count reads per gene for unstranded single-end RNA-seq
featurecounts,featurecounts_02,featurecounts_02_02,beginner,How do I count reads per gene for unstranded single-end RNA-seq?
featurecounts,featurecounts_02,featurecounts_02_03,student,I need to count reads per gene for unstranded single-end RNA-seq
featurecounts,featurecounts_02,featurecounts_02_04,polite,Please count reads per gene for unstranded single-end RNA-seq
featurecounts,featurecounts_02,featurecounts_02_05,sysadmin,Use featurecounts to count reads per gene for unstranded single-end RNA-seq
featurecounts,featurecounts_02,featurecounts_02_06,goal_oriented,I want to count reads per gene for unstranded single-end RNA-seq
featurecounts,featurecounts_02,featurecounts_02_07,expert,count reads per gene unstranded single-end RNA-seq
featurecounts,featurecounts_02,featurecounts_02_08,detailed,"I have data that I need to process: count reads per gene for unstranded single-end RNA-seq, saving the result to a specified output file"
featurecounts,featurecounts_02,featurecounts_02_09,informal,"Hey, can you help me count reads per gene for unstranded single-end RNA-seq?"
featurecounts,featurecounts_02,featurecounts_02_10,alternative,Perform: count reads per gene for unstranded single-end RNA-seq
featurecounts,featurecounts_03,featurecounts_03_01,original,count reads allowing multi-mapping reads to be counted
featurecounts,featurecounts_03,featurecounts_03_02,beginner,How do I count reads allowing multi-mapping reads to be counted?
featurecounts,featurecounts_03,featurecounts_03_03,student,I need to count reads allowing multi-mapping reads to be counted
featurecounts,featurecounts_03,featurecounts_03_04,polite,Please count reads allowing multi-mapping reads to be counted
featurecounts,featurecounts_03,featurecounts_03_05,sysadmin,Use featurecounts to count reads allowing multi-mapping reads to be counted
featurecounts,featurecounts_03,featurecounts_03_06,goal_oriented,I want to count reads allowing multi-mapping reads to be counted
featurecounts,featurecounts_03,featurecounts_03_07,expert,count reads allowing multi-mapping reads be counted
featurecounts,featurecounts_03,featurecounts_03_08,detailed,"I have data that I need to process: count reads allowing multi-mapping reads to be counted, utilizing multiple CPU threads for speed, saving the result to a specified output file"
featurecounts,featurecounts_03,featurecounts_03_09,informal,"Hey, can you help me count reads allowing multi-mapping reads to be counted?"
featurecounts,featurecounts_03,featurecounts_03_10,alternative,Output be counted by performing: count reads allowing multi-mapping reads
featurecounts,featurecounts_04,featurecounts_04_01,original,count ChIP-seq reads per peak region using BED file
featurecounts,featurecounts_04,featurecounts_04_02,beginner,How do I count ChIP-seq reads per peak region using BED file?
featurecounts,featurecounts_04,featurecounts_04_03,student,I need to count ChIP-seq reads per peak region using BED file
featurecounts,featurecounts_04,featurecounts_04_04,polite,Please count ChIP-seq reads per peak region using BED file
featurecounts,featurecounts_04,featurecounts_04_05,sysadmin,Use featurecounts to count ChIP-seq reads per peak region using BED file
featurecounts,featurecounts_04,featurecounts_04_06,goal_oriented,I want to count ChIP-seq reads per peak region using BED file
featurecounts,featurecounts_04,featurecounts_04_07,expert,count ChIP-seq reads per peak region BED file
featurecounts,featurecounts_04,featurecounts_04_08,detailed,"I have data that I need to process: count ChIP-seq reads per peak region using BED file, saving the result to a specified output file"
featurecounts,featurecounts_04,featurecounts_04_09,informal,"Hey, can you help me count ChIP-seq reads per peak region using BED file?"
featurecounts,featurecounts_04,featurecounts_04_10,alternative,Perform: count ChIP-seq reads per peak region using BED file
featurecounts,featurecounts_05,featurecounts_05_01,original,count exon-level reads for exon usage analysis
featurecounts,featurecounts_05,featurecounts_05_02,beginner,How do I count exon-level reads for exon usage analysis?
featurecounts,featurecounts_05,featurecounts_05_03,student,I need to count exon-level reads for exon usage analysis
featurecounts,featurecounts_05,featurecounts_05_04,polite,Please count exon-level reads for exon usage analysis
featurecounts,featurecounts_05,featurecounts_05_05,sysadmin,Use featurecounts to count exon-level reads for exon usage analysis
featurecounts,featurecounts_05,featurecounts_05_06,goal_oriented,I want to count exon-level reads for exon usage analysis
featurecounts,featurecounts_05,featurecounts_05_07,expert,count exon-level reads exon usage analysis
featurecounts,featurecounts_05,featurecounts_05_08,detailed,"I have data that I need to process: count exon-level reads for exon usage analysis, utilizing multiple CPU threads for speed, saving the result to a specified output file"
featurecounts,featurecounts_05,featurecounts_05_09,informal,"Hey, can you help me count exon-level reads for exon usage analysis?"
featurecounts,featurecounts_05,featurecounts_05_10,alternative,Perform: count exon-level reads for exon usage analysis
featurecounts,featurecounts_06,featurecounts_06_01,original,count reads per gene for paired-end RNA-seq with reverse-strand library with verbose output
featurecounts,featurecounts_06,featurecounts_06_02,beginner,How do I count reads per gene for paired-end RNA-seq with reverse-strand library with verbose output?
featurecounts,featurecounts_06,featurecounts_06_03,student,I need to count reads per gene for paired-end RNA-seq with reverse-strand library with verbose output
featurecounts,featurecounts_06,featurecounts_06_04,polite,Please count reads per gene for paired-end RNA-seq with reverse-strand library with verbose output
featurecounts,featurecounts_06,featurecounts_06_05,sysadmin,Use featurecounts to count reads per gene for paired-end RNA-seq with reverse-strand library with verbose output
featurecounts,featurecounts_06,featurecounts_06_06,goal_oriented,I want to count reads per gene for paired-end RNA-seq with reverse-strand library with verbose output
featurecounts,featurecounts_06,featurecounts_06_07,expert,count reads per gene paired-end RNA-seq reverse-strand library verbose output
featurecounts,featurecounts_06,featurecounts_06_08,detailed,"I have data that I need to process: count reads per gene for paired-end RNA-seq with reverse-strand library with verbose output, utilizing multiple CPU threads for speed, saving the result to a specified output file"
featurecounts,featurecounts_06,featurecounts_06_09,informal,"Hey, can you help me count reads per gene for paired-end RNA-seq with reverse-strand library with verbose output?"
featurecounts,featurecounts_06,featurecounts_06_10,alternative,"With reverse-strand library with verbose output, count reads per gene for paired-end RNA-seq"
featurecounts,featurecounts_07,featurecounts_07_01,original,count reads per gene for unstranded single-end RNA-seq using multiple threads
featurecounts,featurecounts_07,featurecounts_07_02,beginner,How do I count reads per gene for unstranded single-end RNA-seq using multiple threads?
featurecounts,featurecounts_07,featurecounts_07_03,student,I need to count reads per gene for unstranded single-end RNA-seq using multiple threads
featurecounts,featurecounts_07,featurecounts_07_04,polite,Please count reads per gene for unstranded single-end RNA-seq using multiple threads
featurecounts,featurecounts_07,featurecounts_07_05,sysadmin,Use featurecounts to count reads per gene for unstranded single-end RNA-seq using multiple threads
featurecounts,featurecounts_07,featurecounts_07_06,goal_oriented,I want to count reads per gene for unstranded single-end RNA-seq using multiple threads
featurecounts,featurecounts_07,featurecounts_07_07,expert,count reads per gene unstranded single-end RNA-seq multiple threads
featurecounts,featurecounts_07,featurecounts_07_08,detailed,"I have data that I need to process: count reads per gene for unstranded single-end RNA-seq using multiple threads, utilizing multiple CPU threads for speed, saving the result to a specified output file"
featurecounts,featurecounts_07,featurecounts_07_09,informal,"Hey, can you help me count reads per gene for unstranded single-end RNA-seq using multiple threads?"
featurecounts,featurecounts_07,featurecounts_07_10,alternative,Perform: count reads per gene for unstranded single-end RNA-seq using multiple threads
featurecounts,featurecounts_08,featurecounts_08_01,original,count reads allowing multi-mapping reads to be counted and write output to a file
featurecounts,featurecounts_08,featurecounts_08_02,beginner,How do I count reads allowing multi-mapping reads to be counted and write output to a file?
featurecounts,featurecounts_08,featurecounts_08_03,student,I need to count reads allowing multi-mapping reads to be counted and write output to a file
featurecounts,featurecounts_08,featurecounts_08_04,polite,Please count reads allowing multi-mapping reads to be counted and write output to a file
featurecounts,featurecounts_08,featurecounts_08_05,sysadmin,Use featurecounts to count reads allowing multi-mapping reads to be counted and write output to a file
featurecounts,featurecounts_08,featurecounts_08_06,goal_oriented,I want to count reads allowing multi-mapping reads to be counted and write output to a file
featurecounts,featurecounts_08,featurecounts_08_07,expert,count reads allowing multi-mapping reads be counted write output file
featurecounts,featurecounts_08,featurecounts_08_08,detailed,"I have data that I need to process: count reads allowing multi-mapping reads to be counted and write output to a file, utilizing multiple CPU threads for speed, saving the result to a specified output file"
featurecounts,featurecounts_08,featurecounts_08_09,informal,"Hey, can you help me count reads allowing multi-mapping reads to be counted and write output to a file?"
featurecounts,featurecounts_08,featurecounts_08_10,alternative,Write output to a file after count reads allowing multi-mapping reads to be counted
featurecounts,featurecounts_09,featurecounts_09_01,original,count ChIP-seq reads per peak region using BED file in quiet mode
featurecounts,featurecounts_09,featurecounts_09_02,beginner,How do I count ChIP-seq reads per peak region using BED file in quiet mode?
featurecounts,featurecounts_09,featurecounts_09_03,student,I need to count ChIP-seq reads per peak region using BED file in quiet mode
featurecounts,featurecounts_09,featurecounts_09_04,polite,Please count ChIP-seq reads per peak region using BED file in quiet mode
featurecounts,featurecounts_09,featurecounts_09_05,sysadmin,Use featurecounts to count ChIP-seq reads per peak region using BED file in quiet mode
featurecounts,featurecounts_09,featurecounts_09_06,goal_oriented,I want to count ChIP-seq reads per peak region using BED file in quiet mode
featurecounts,featurecounts_09,featurecounts_09_07,expert,count ChIP-seq reads per peak region BED file quiet mode
featurecounts,featurecounts_09,featurecounts_09_08,detailed,"I have data that I need to process: count ChIP-seq reads per peak region using BED file in quiet mode, saving the result to a specified output file"
featurecounts,featurecounts_09,featurecounts_09_09,informal,"Hey, can you help me count ChIP-seq reads per peak region using BED file in quiet mode?"
featurecounts,featurecounts_09,featurecounts_09_10,alternative,Perform: count ChIP-seq reads per peak region using BED file in quiet mode
featurecounts,featurecounts_10,featurecounts_10_01,original,count exon-level reads for exon usage analysis with default parameters
featurecounts,featurecounts_10,featurecounts_10_02,beginner,How do I count exon-level reads for exon usage analysis with default parameters?
featurecounts,featurecounts_10,featurecounts_10_03,student,I need to count exon-level reads for exon usage analysis with default parameters
featurecounts,featurecounts_10,featurecounts_10_04,polite,Please count exon-level reads for exon usage analysis with default parameters
featurecounts,featurecounts_10,featurecounts_10_05,sysadmin,Use featurecounts to count exon-level reads for exon usage analysis with default parameters
featurecounts,featurecounts_10,featurecounts_10_06,goal_oriented,I want to count exon-level reads for exon usage analysis with default parameters
featurecounts,featurecounts_10,featurecounts_10_07,expert,count exon-level reads exon usage analysis default parameters
featurecounts,featurecounts_10,featurecounts_10_08,detailed,"I have data that I need to process: count exon-level reads for exon usage analysis with default parameters, utilizing multiple CPU threads for speed, saving the result to a specified output file"
featurecounts,featurecounts_10,featurecounts_10_09,informal,"Hey, can you help me count exon-level reads for exon usage analysis with default parameters?"
featurecounts,featurecounts_10,featurecounts_10_10,alternative,"With default parameters, count exon-level reads for exon usage analysis"
find,find_01,find_01_01,original,find all files larger than 100 MB in the current directory tree
find,find_01,find_01_02,beginner,How do I find all files larger than 100 MB in the current directory tree?
find,find_01,find_01_03,student,I need to find all files larger than 100 MB in the current directory tree
find,find_01,find_01_04,polite,Please find all files larger than 100 MB in the current directory tree
find,find_01,find_01_05,sysadmin,Use find to find all files larger than 100 MB in the current directory tree
find,find_01,find_01_06,goal_oriented,I want to find all files larger than 100 MB in the current directory tree
find,find_01,find_01_07,expert,find all files larger than 100 MB current directory tree
find,find_01,find_01_08,detailed,I have data that I need to process: find all files larger than 100 MB in the current directory tree
find,find_01,find_01_09,informal,"Hey, can you help me find all files larger than 100 MB in the current directory tree?"
find,find_01,find_01_10,alternative,Perform: find all files larger than 100 MB in the current directory tree
find,find_02,find_02_01,original,find all Python files modified in the last 7 days
find,find_02,find_02_02,beginner,How do I find all Python files modified in the last 7 days?
find,find_02,find_02_03,student,I need to find all Python files modified in the last 7 days
find,find_02,find_02_04,polite,Please find all Python files modified in the last 7 days
find,find_02,find_02_05,sysadmin,Use find to find all Python files modified in the last 7 days
find,find_02,find_02_06,goal_oriented,I want to find all Python files modified in the last 7 days
find,find_02,find_02_07,expert,find all Python files modified last 7 days
find,find_02,find_02_08,detailed,I have data that I need to process: find all Python files modified in the last 7 days
find,find_02,find_02_09,informal,"Hey, can you help me find all Python files modified in the last 7 days?"
find,find_02,find_02_10,alternative,Perform: find all Python files modified in the last 7 days
find,find_03,find_03_01,original,find and delete all .tmp files in a directory tree
find,find_03,find_03_02,beginner,How do I find and delete all .tmp files in a directory tree?
find,find_03,find_03_03,student,I need to find and delete all .tmp files in a directory tree
find,find_03,find_03_04,polite,Please find and delete all .tmp files in a directory tree
find,find_03,find_03_05,sysadmin,Use find to find and delete all .tmp files in a directory tree
find,find_03,find_03_06,goal_oriented,I want to find and delete all .tmp files in a directory tree
find,find_03,find_03_07,expert,find delete all .tmp files directory tree
find,find_03,find_03_08,detailed,I have data that I need to process: find and delete all .tmp files in a directory tree
find,find_03,find_03_09,informal,"Hey, can you help me find and delete all .tmp files in a directory tree?"
find,find_03,find_03_10,alternative,Delete all .tmp files in a directory tree after find
find,find_04,find_04_01,original,find files by name case-insensitively
find,find_04,find_04_02,beginner,How do I find files by name case-insensitively?
find,find_04,find_04_03,student,I need to find files by name case-insensitively
find,find_04,find_04_04,polite,Please find files by name case-insensitively
find,find_04,find_04_05,sysadmin,Use find to find files by name case-insensitively
find,find_04,find_04_06,goal_oriented,I want to find files by name case-insensitively
find,find_04,find_04_07,expert,find files by name case-insensitively
find,find_04,find_04_08,detailed,I have data that I need to process: find files by name case-insensitively
find,find_04,find_04_09,informal,"Hey, can you help me find files by name case-insensitively?"
find,find_04,find_04_10,alternative,Perform: find files by name case-insensitively
find,find_05,find_05_01,original,find all directories in the current directory (depth 1 only)
find,find_05,find_05_02,beginner,How do I find all directories in the current directory (depth 1 only)?
find,find_05,find_05_03,student,I need to find all directories in the current directory (depth 1 only)
find,find_05,find_05_04,polite,Please find all directories in the current directory (depth 1 only)
find,find_05,find_05_05,sysadmin,Use find to find all directories in the current directory (depth 1 only)
find,find_05,find_05_06,goal_oriented,I want to find all directories in the current directory (depth 1 only)
find,find_05,find_05_07,expert,find all directories current directory (depth 1 only)
find,find_05,find_05_08,detailed,I have data that I need to process: find all directories in the current directory (depth 1 only)
find,find_05,find_05_09,informal,"Hey, can you help me find all directories in the current directory (depth 1 only)?"
find,find_05,find_05_10,alternative,Perform: find all directories in the current directory (depth 1 only)
find,find_06,find_06_01,original,find empty files and directories
find,find_06,find_06_02,beginner,How do I find empty files and directories?
find,find_06,find_06_03,student,I need to find empty files and directories
find,find_06,find_06_04,polite,Please find empty files and directories
find,find_06,find_06_05,sysadmin,Use find to find empty files and directories
find,find_06,find_06_06,goal_oriented,I want to find empty files and directories
find,find_06,find_06_07,expert,find empty files directories
find,find_06,find_06_08,detailed,I have data that I need to process: find empty files and directories
find,find_06,find_06_09,informal,"Hey, can you help me find empty files and directories?"
find,find_06,find_06_10,alternative,Directories after find empty files
find,find_07,find_07_01,original,find files and execute a command on each match
find,find_07,find_07_02,beginner,How do I find files and execute a command on each match?
find,find_07,find_07_03,student,I need to find files and execute a command on each match
find,find_07,find_07_04,polite,Please find files and execute a command on each match
find,find_07,find_07_05,sysadmin,Use find to find files and execute a command on each match
find,find_07,find_07_06,goal_oriented,I want to find files and execute a command on each match
find,find_07,find_07_07,expert,find files execute command on each match
find,find_07,find_07_08,detailed,I have data that I need to process: find files and execute a command on each match
find,find_07,find_07_09,informal,"Hey, can you help me find files and execute a command on each match?"
find,find_07,find_07_10,alternative,Execute a command on each match after find files
find,find_08,find_08_01,original,find files owned by a specific user
find,find_08,find_08_02,beginner,How do I find files owned by a specific user?
find,find_08,find_08_03,student,I need to find files owned by a specific user
find,find_08,find_08_04,polite,Please find files owned by a specific user
find,find_08,find_08_05,sysadmin,Use find to find files owned by a specific user
find,find_08,find_08_06,goal_oriented,I want to find files owned by a specific user
find,find_08,find_08_07,expert,find files owned by specific user
find,find_08,find_08_08,detailed,I have data that I need to process: find files owned by a specific user
find,find_08,find_08_09,informal,"Hey, can you help me find files owned by a specific user?"
find,find_08,find_08_10,alternative,Perform: find files owned by a specific user
find,find_09,find_09_01,original,find recently modified files and sort by modification time
find,find_09,find_09_02,beginner,How do I find recently modified files and sort by modification time?
find,find_09,find_09_03,student,I need to find recently modified files and sort by modification time
find,find_09,find_09_04,polite,Please find recently modified files and sort by modification time
find,find_09,find_09_05,sysadmin,Use find to find recently modified files and sort by modification time
find,find_09,find_09_06,goal_oriented,I want to find recently modified files and sort by modification time
find,find_09,find_09_07,expert,find recently modified files sort by modification time
find,find_09,find_09_08,detailed,I have data that I need to process: find recently modified files and sort by modification time
find,find_09,find_09_09,informal,"Hey, can you help me find recently modified files and sort by modification time?"
find,find_09,find_09_10,alternative,Sort by modification time after find recently modified files
find,find_10,find_10_01,original,find files with specific permissions
find,find_10,find_10_02,beginner,How do I find files with specific permissions?
find,find_10,find_10_03,student,I need to find files with specific permissions
find,find_10,find_10_04,polite,Please find files with specific permissions
find,find_10,find_10_05,sysadmin,Use find to find files with specific permissions
find,find_10,find_10_06,goal_oriented,I want to find files with specific permissions
find,find_10,find_10_07,expert,find files specific permissions
find,find_10,find_10_08,detailed,I have data that I need to process: find files with specific permissions
find,find_10,find_10_09,informal,"Hey, can you help me find files with specific permissions?"
find,find_10,find_10_10,alternative,"With specific permissions, find files"
flye,flye_01,flye_01_01,original,assemble bacterial genome from Oxford Nanopore reads
flye,flye_01,flye_01_02,beginner,How do I assemble bacterial genome from Oxford Nanopore reads?
flye,flye_01,flye_01_03,student,I need to assemble bacterial genome from Oxford Nanopore reads
flye,flye_01,flye_01_04,polite,Please assemble bacterial genome from Oxford Nanopore reads
flye,flye_01,flye_01_05,sysadmin,Use flye to assemble bacterial genome from Oxford Nanopore reads
flye,flye_01,flye_01_06,goal_oriented,I want to assemble bacterial genome from Oxford Nanopore reads
flye,flye_01,flye_01_07,expert,assemble bacterial genome Oxford Nanopore reads
flye,flye_01,flye_01_08,detailed,"I have data that I need to process: assemble bacterial genome from Oxford Nanopore reads, utilizing multiple CPU threads for speed"
flye,flye_01,flye_01_09,informal,"Hey, can you help me assemble bacterial genome from Oxford Nanopore reads?"
flye,flye_01,flye_01_10,alternative,Perform: assemble bacterial genome from Oxford Nanopore reads
flye,flye_02,flye_02_01,original,assemble genome from PacBio HiFi reads
flye,flye_02,flye_02_02,beginner,How do I assemble genome from PacBio HiFi reads?
flye,flye_02,flye_02_03,student,I need to assemble genome from PacBio HiFi reads
flye,flye_02,flye_02_04,polite,Please assemble genome from PacBio HiFi reads
flye,flye_02,flye_02_05,sysadmin,Use flye to assemble genome from PacBio HiFi reads
flye,flye_02,flye_02_06,goal_oriented,I want to assemble genome from PacBio HiFi reads
flye,flye_02,flye_02_07,expert,assemble genome PacBio HiFi reads
flye,flye_02,flye_02_08,detailed,"I have data that I need to process: assemble genome from PacBio HiFi reads, utilizing multiple CPU threads for speed"
flye,flye_02,flye_02_09,informal,"Hey, can you help me assemble genome from PacBio HiFi reads?"
flye,flye_02,flye_02_10,alternative,Perform: assemble genome from PacBio HiFi reads
flye,flye_03,flye_03_01,original,assemble metagenomic community from ONT reads
flye,flye_03,flye_03_02,beginner,How do I assemble metagenomic community from ONT reads?
flye,flye_03,flye_03_03,student,I need to assemble metagenomic community from ONT reads
flye,flye_03,flye_03_04,polite,Please assemble metagenomic community from ONT reads
flye,flye_03,flye_03_05,sysadmin,Use flye to assemble metagenomic community from ONT reads
flye,flye_03,flye_03_06,goal_oriented,I want to assemble metagenomic community from ONT reads
flye,flye_03,flye_03_07,expert,assemble metagenomic community ONT reads
flye,flye_03,flye_03_08,detailed,"I have data that I need to process: assemble metagenomic community from ONT reads, utilizing multiple CPU threads for speed"
flye,flye_03,flye_03_09,informal,"Hey, can you help me assemble metagenomic community from ONT reads?"
flye,flye_03,flye_03_10,alternative,Perform: assemble metagenomic community from ONT reads
flye,flye_04,flye_04_01,original,"assemble with high-quality ONT reads (R10, Q20+)"
flye,flye_04,flye_04_02,beginner,"How do I assemble with high-quality ONT reads (R10, Q20+)?"
flye,flye_04,flye_04_03,student,"I need to assemble with high-quality ONT reads (R10, Q20+)"
flye,flye_04,flye_04_04,polite,"Please assemble with high-quality ONT reads (R10, Q20+)"
flye,flye_04,flye_04_05,sysadmin,"Use flye to assemble with high-quality ONT reads (R10, Q20+)"
flye,flye_04,flye_04_06,goal_oriented,"I want to assemble with high-quality ONT reads (R10, Q20+)"
flye,flye_04,flye_04_07,expert,"assemble high-quality ONT reads (R10, Q20+)"
flye,flye_04,flye_04_08,detailed,"I have data that I need to process: assemble with high-quality ONT reads (R10, Q20+), utilizing multiple CPU threads for speed"
flye,flye_04,flye_04_09,informal,"Hey, can you help me assemble with high-quality ONT reads (R10, Q20+)?"
flye,flye_04,flye_04_10,alternative,"With high-quality ONT reads (R10, Q20+), assemble"
flye,flye_05,flye_05_01,original,resume an interrupted Flye assembly
flye,flye_05,flye_05_02,beginner,How do I resume an interrupted Flye assembly?
flye,flye_05,flye_05_03,student,I need to resume an interrupted Flye assembly
flye,flye_05,flye_05_04,polite,Please resume an interrupted Flye assembly
flye,flye_05,flye_05_05,sysadmin,Use flye to resume an interrupted Flye assembly
flye,flye_05,flye_05_06,goal_oriented,I want to resume an interrupted Flye assembly
flye,flye_05,flye_05_07,expert,resume interrupted Flye assembly
flye,flye_05,flye_05_08,detailed,"I have data that I need to process: resume an interrupted Flye assembly, utilizing multiple CPU threads for speed"
flye,flye_05,flye_05_09,informal,"Hey, can you help me resume an interrupted Flye assembly?"
flye,flye_05,flye_05_10,alternative,Perform: resume an interrupted Flye assembly
flye,flye_06,flye_06_01,original,assemble bacterial genome from Oxford Nanopore reads with verbose output
flye,flye_06,flye_06_02,beginner,How do I assemble bacterial genome from Oxford Nanopore reads with verbose output?
flye,flye_06,flye_06_03,student,I need to assemble bacterial genome from Oxford Nanopore reads with verbose output
flye,flye_06,flye_06_04,polite,Please assemble bacterial genome from Oxford Nanopore reads with verbose output
flye,flye_06,flye_06_05,sysadmin,Use flye to assemble bacterial genome from Oxford Nanopore reads with verbose output
flye,flye_06,flye_06_06,goal_oriented,I want to assemble bacterial genome from Oxford Nanopore reads with verbose output
flye,flye_06,flye_06_07,expert,assemble bacterial genome Oxford Nanopore reads verbose output
flye,flye_06,flye_06_08,detailed,"I have data that I need to process: assemble bacterial genome from Oxford Nanopore reads with verbose output, utilizing multiple CPU threads for speed"
flye,flye_06,flye_06_09,informal,"Hey, can you help me assemble bacterial genome from Oxford Nanopore reads with verbose output?"
flye,flye_06,flye_06_10,alternative,"With verbose output, assemble bacterial genome from Oxford Nanopore reads"
flye,flye_07,flye_07_01,original,assemble genome from PacBio HiFi reads using multiple threads
flye,flye_07,flye_07_02,beginner,How do I assemble genome from PacBio HiFi reads using multiple threads?
flye,flye_07,flye_07_03,student,I need to assemble genome from PacBio HiFi reads using multiple threads
flye,flye_07,flye_07_04,polite,Please assemble genome from PacBio HiFi reads using multiple threads
flye,flye_07,flye_07_05,sysadmin,Use flye to assemble genome from PacBio HiFi reads using multiple threads
flye,flye_07,flye_07_06,goal_oriented,I want to assemble genome from PacBio HiFi reads using multiple threads
flye,flye_07,flye_07_07,expert,assemble genome PacBio HiFi reads multiple threads
flye,flye_07,flye_07_08,detailed,"I have data that I need to process: assemble genome from PacBio HiFi reads using multiple threads, utilizing multiple CPU threads for speed"
flye,flye_07,flye_07_09,informal,"Hey, can you help me assemble genome from PacBio HiFi reads using multiple threads?"
flye,flye_07,flye_07_10,alternative,Perform: assemble genome from PacBio HiFi reads using multiple threads
flye,flye_08,flye_08_01,original,assemble metagenomic community from ONT reads and write output to a file
flye,flye_08,flye_08_02,beginner,How do I assemble metagenomic community from ONT reads and write output to a file?
flye,flye_08,flye_08_03,student,I need to assemble metagenomic community from ONT reads and write output to a file
flye,flye_08,flye_08_04,polite,Please assemble metagenomic community from ONT reads and write output to a file
flye,flye_08,flye_08_05,sysadmin,Use flye to assemble metagenomic community from ONT reads and write output to a file
flye,flye_08,flye_08_06,goal_oriented,I want to assemble metagenomic community from ONT reads and write output to a file
flye,flye_08,flye_08_07,expert,assemble metagenomic community ONT reads write output file
flye,flye_08,flye_08_08,detailed,"I have data that I need to process: assemble metagenomic community from ONT reads and write output to a file, utilizing multiple CPU threads for speed, saving the result to a specified output file"
flye,flye_08,flye_08_09,informal,"Hey, can you help me assemble metagenomic community from ONT reads and write output to a file?"
flye,flye_08,flye_08_10,alternative,Write output to a file after assemble metagenomic community from ONT reads
flye,flye_09,flye_09_01,original,"assemble with high-quality ONT reads (R10, Q20+) in quiet mode"
flye,flye_09,flye_09_02,beginner,"How do I assemble with high-quality ONT reads (R10, Q20+) in quiet mode?"
flye,flye_09,flye_09_03,student,"I need to assemble with high-quality ONT reads (R10, Q20+) in quiet mode"
flye,flye_09,flye_09_04,polite,"Please assemble with high-quality ONT reads (R10, Q20+) in quiet mode"
flye,flye_09,flye_09_05,sysadmin,"Use flye to assemble with high-quality ONT reads (R10, Q20+) in quiet mode"
flye,flye_09,flye_09_06,goal_oriented,"I want to assemble with high-quality ONT reads (R10, Q20+) in quiet mode"
flye,flye_09,flye_09_07,expert,"assemble high-quality ONT reads (R10, Q20+) quiet mode"
flye,flye_09,flye_09_08,detailed,"I have data that I need to process: assemble with high-quality ONT reads (R10, Q20+) in quiet mode, utilizing multiple CPU threads for speed"
flye,flye_09,flye_09_09,informal,"Hey, can you help me assemble with high-quality ONT reads (R10, Q20+) in quiet mode?"
flye,flye_09,flye_09_10,alternative,"With high-quality ONT reads (R10, Q20+) in quiet mode, assemble"
flye,flye_10,flye_10_01,original,resume an interrupted Flye assembly with default parameters
flye,flye_10,flye_10_02,beginner,How do I resume an interrupted Flye assembly with default parameters?
flye,flye_10,flye_10_03,student,I need to resume an interrupted Flye assembly with default parameters
flye,flye_10,flye_10_04,polite,Please resume an interrupted Flye assembly with default parameters
flye,flye_10,flye_10_05,sysadmin,Use flye to resume an interrupted Flye assembly with default parameters
flye,flye_10,flye_10_06,goal_oriented,I want to resume an interrupted Flye assembly with default parameters
flye,flye_10,flye_10_07,expert,resume interrupted Flye assembly default parameters
flye,flye_10,flye_10_08,detailed,"I have data that I need to process: resume an interrupted Flye assembly with default parameters, utilizing multiple CPU threads for speed"
flye,flye_10,flye_10_09,informal,"Hey, can you help me resume an interrupted Flye assembly with default parameters?"
flye,flye_10,flye_10_10,alternative,"With default parameters, resume an interrupted Flye assembly"
freebayes,freebayes_01,freebayes_01_01,original,call germline variants from a single sample BAM file
freebayes,freebayes_01,freebayes_01_02,beginner,How do I call germline variants from a single sample BAM file?
freebayes,freebayes_01,freebayes_01_03,student,I need to call germline variants from a single sample BAM file
freebayes,freebayes_01,freebayes_01_04,polite,Please call germline variants from a single sample BAM file
freebayes,freebayes_01,freebayes_01_05,sysadmin,Use freebayes to call germline variants from a single sample BAM file
freebayes,freebayes_01,freebayes_01_06,goal_oriented,I want to call germline variants from a single sample BAM file
freebayes,freebayes_01,freebayes_01_07,expert,call germline variants single sample BAM file
freebayes,freebayes_01,freebayes_01_08,detailed,I have data that I need to process: call germline variants from a single sample BAM file
freebayes,freebayes_01,freebayes_01_09,informal,"Hey, can you help me call germline variants from a single sample BAM file?"
freebayes,freebayes_01,freebayes_01_10,alternative,Perform: call germline variants from a single sample BAM file
freebayes,freebayes_02,freebayes_02_01,original,call variants with minimum coverage and allele frequency filters
freebayes,freebayes_02,freebayes_02_02,beginner,How do I call variants with minimum coverage and allele frequency filters?
freebayes,freebayes_02,freebayes_02_03,student,I need to call variants with minimum coverage and allele frequency filters
freebayes,freebayes_02,freebayes_02_04,polite,Please call variants with minimum coverage and allele frequency filters
freebayes,freebayes_02,freebayes_02_05,sysadmin,Use freebayes to call variants with minimum coverage and allele frequency filters
freebayes,freebayes_02,freebayes_02_06,goal_oriented,I want to call variants with minimum coverage and allele frequency filters
freebayes,freebayes_02,freebayes_02_07,expert,call variants minimum coverage allele frequency filters
freebayes,freebayes_02,freebayes_02_08,detailed,I have data that I need to process: call variants with minimum coverage and allele frequency filters
freebayes,freebayes_02,freebayes_02_09,informal,"Hey, can you help me call variants with minimum coverage and allele frequency filters?"
freebayes,freebayes_02,freebayes_02_10,alternative,Allele frequency filters after call variants with minimum coverage
freebayes,freebayes_03,freebayes_03_01,original,call variants jointly from multiple samples
freebayes,freebayes_03,freebayes_03_02,beginner,How do I call variants jointly from multiple samples?
freebayes,freebayes_03,freebayes_03_03,student,I need to call variants jointly from multiple samples
freebayes,freebayes_03,freebayes_03_04,polite,Please call variants jointly from multiple samples
freebayes,freebayes_03,freebayes_03_05,sysadmin,Use freebayes to call variants jointly from multiple samples
freebayes,freebayes_03,freebayes_03_06,goal_oriented,I want to call variants jointly from multiple samples
freebayes,freebayes_03,freebayes_03_07,expert,call variants jointly multiple samples
freebayes,freebayes_03,freebayes_03_08,detailed,I have data that I need to process: call variants jointly from multiple samples
freebayes,freebayes_03,freebayes_03_09,informal,"Hey, can you help me call variants jointly from multiple samples?"
freebayes,freebayes_03,freebayes_03_10,alternative,Perform: call variants jointly from multiple samples
freebayes,freebayes_04,freebayes_04_01,original,call variants restricted to a specific genomic region
freebayes,freebayes_04,freebayes_04_02,beginner,How do I call variants restricted to a specific genomic region?
freebayes,freebayes_04,freebayes_04_03,student,I need to call variants restricted to a specific genomic region
freebayes,freebayes_04,freebayes_04_04,polite,Please call variants restricted to a specific genomic region
freebayes,freebayes_04,freebayes_04_05,sysadmin,Use freebayes to call variants restricted to a specific genomic region
freebayes,freebayes_04,freebayes_04_06,goal_oriented,I want to call variants restricted to a specific genomic region
freebayes,freebayes_04,freebayes_04_07,expert,call variants restricted specific genomic region
freebayes,freebayes_04,freebayes_04_08,detailed,I have data that I need to process: call variants restricted to a specific genomic region
freebayes,freebayes_04,freebayes_04_09,informal,"Hey, can you help me call variants restricted to a specific genomic region?"
freebayes,freebayes_04,freebayes_04_10,alternative,Output a specific genomic region by performing: call variants restricted
freebayes,freebayes_05,freebayes_05_01,original,call variants with population priors from a VCF
freebayes,freebayes_05,freebayes_05_02,beginner,How do I call variants with population priors from a VCF?
freebayes,freebayes_05,freebayes_05_03,student,I need to call variants with population priors from a VCF
freebayes,freebayes_05,freebayes_05_04,polite,Please call variants with population priors from a VCF
freebayes,freebayes_05,freebayes_05_05,sysadmin,Use freebayes to call variants with population priors from a VCF
freebayes,freebayes_05,freebayes_05_06,goal_oriented,I want to call variants with population priors from a VCF
freebayes,freebayes_05,freebayes_05_07,expert,call variants population priors VCF
freebayes,freebayes_05,freebayes_05_08,detailed,I have data that I need to process: call variants with population priors from a VCF
freebayes,freebayes_05,freebayes_05_09,informal,"Hey, can you help me call variants with population priors from a VCF?"
freebayes,freebayes_05,freebayes_05_10,alternative,"With population priors from a VCF, call variants"
freebayes,freebayes_06,freebayes_06_01,original,call germline variants from a single sample BAM file
freebayes,freebayes_06,freebayes_06_02,beginner,How do I call germline variants from a single sample BAM file?
freebayes,freebayes_06,freebayes_06_03,student,I need to call germline variants from a single sample BAM file
freebayes,freebayes_06,freebayes_06_04,polite,Please call germline variants from a single sample BAM file
freebayes,freebayes_06,freebayes_06_05,sysadmin,Use freebayes to call germline variants from a single sample BAM file
freebayes,freebayes_06,freebayes_06_06,goal_oriented,I want to call germline variants from a single sample BAM file
freebayes,freebayes_06,freebayes_06_07,expert,call germline variants single sample BAM file
freebayes,freebayes_06,freebayes_06_08,detailed,I have data that I need to process: call germline variants from a single sample BAM file
freebayes,freebayes_06,freebayes_06_09,informal,"Hey, can you help me call germline variants from a single sample BAM file?"
freebayes,freebayes_06,freebayes_06_10,alternative,Perform: call germline variants from a single sample BAM file
freebayes,freebayes_07,freebayes_07_01,original,call variants with minimum coverage and allele frequency filters
freebayes,freebayes_07,freebayes_07_02,beginner,How do I call variants with minimum coverage and allele frequency filters?
freebayes,freebayes_07,freebayes_07_03,student,I need to call variants with minimum coverage and allele frequency filters
freebayes,freebayes_07,freebayes_07_04,polite,Please call variants with minimum coverage and allele frequency filters
freebayes,freebayes_07,freebayes_07_05,sysadmin,Use freebayes to call variants with minimum coverage and allele frequency filters
freebayes,freebayes_07,freebayes_07_06,goal_oriented,I want to call variants with minimum coverage and allele frequency filters
freebayes,freebayes_07,freebayes_07_07,expert,call variants minimum coverage allele frequency filters
freebayes,freebayes_07,freebayes_07_08,detailed,I have data that I need to process: call variants with minimum coverage and allele frequency filters
freebayes,freebayes_07,freebayes_07_09,informal,"Hey, can you help me call variants with minimum coverage and allele frequency filters?"
freebayes,freebayes_07,freebayes_07_10,alternative,Allele frequency filters after call variants with minimum coverage
freebayes,freebayes_08,freebayes_08_01,original,call variants jointly from multiple samples
freebayes,freebayes_08,freebayes_08_02,beginner,How do I call variants jointly from multiple samples?
freebayes,freebayes_08,freebayes_08_03,student,I need to call variants jointly from multiple samples
freebayes,freebayes_08,freebayes_08_04,polite,Please call variants jointly from multiple samples
freebayes,freebayes_08,freebayes_08_05,sysadmin,Use freebayes to call variants jointly from multiple samples
freebayes,freebayes_08,freebayes_08_06,goal_oriented,I want to call variants jointly from multiple samples
freebayes,freebayes_08,freebayes_08_07,expert,call variants jointly multiple samples
freebayes,freebayes_08,freebayes_08_08,detailed,I have data that I need to process: call variants jointly from multiple samples
freebayes,freebayes_08,freebayes_08_09,informal,"Hey, can you help me call variants jointly from multiple samples?"
freebayes,freebayes_08,freebayes_08_10,alternative,Perform: call variants jointly from multiple samples
freebayes,freebayes_09,freebayes_09_01,original,call variants restricted to a specific genomic region
freebayes,freebayes_09,freebayes_09_02,beginner,How do I call variants restricted to a specific genomic region?
freebayes,freebayes_09,freebayes_09_03,student,I need to call variants restricted to a specific genomic region
freebayes,freebayes_09,freebayes_09_04,polite,Please call variants restricted to a specific genomic region
freebayes,freebayes_09,freebayes_09_05,sysadmin,Use freebayes to call variants restricted to a specific genomic region
freebayes,freebayes_09,freebayes_09_06,goal_oriented,I want to call variants restricted to a specific genomic region
freebayes,freebayes_09,freebayes_09_07,expert,call variants restricted specific genomic region
freebayes,freebayes_09,freebayes_09_08,detailed,I have data that I need to process: call variants restricted to a specific genomic region
freebayes,freebayes_09,freebayes_09_09,informal,"Hey, can you help me call variants restricted to a specific genomic region?"
freebayes,freebayes_09,freebayes_09_10,alternative,Output a specific genomic region by performing: call variants restricted
freebayes,freebayes_10,freebayes_10_01,original,call variants with population priors from a VCF with default parameters
freebayes,freebayes_10,freebayes_10_02,beginner,How do I call variants with population priors from a VCF with default parameters?
freebayes,freebayes_10,freebayes_10_03,student,I need to call variants with population priors from a VCF with default parameters
freebayes,freebayes_10,freebayes_10_04,polite,Please call variants with population priors from a VCF with default parameters
freebayes,freebayes_10,freebayes_10_05,sysadmin,Use freebayes to call variants with population priors from a VCF with default parameters
freebayes,freebayes_10,freebayes_10_06,goal_oriented,I want to call variants with population priors from a VCF with default parameters
freebayes,freebayes_10,freebayes_10_07,expert,call variants population priors VCF default parameters
freebayes,freebayes_10,freebayes_10_08,detailed,I have data that I need to process: call variants with population priors from a VCF with default parameters
freebayes,freebayes_10,freebayes_10_09,informal,"Hey, can you help me call variants with population priors from a VCF with default parameters?"
freebayes,freebayes_10,freebayes_10_10,alternative,"With population priors from a VCF with default parameters, call variants"
gatk,gatk_01,gatk_01_01,original,call germline variants from a BAM file using HaplotypeCaller
gatk,gatk_01,gatk_01_02,beginner,How do I call germline variants from a BAM file using HaplotypeCaller?
gatk,gatk_01,gatk_01_03,student,I need to call germline variants from a BAM file using HaplotypeCaller
gatk,gatk_01,gatk_01_04,polite,Please call germline variants from a BAM file using HaplotypeCaller
gatk,gatk_01,gatk_01_05,sysadmin,Use gatk to call germline variants from a BAM file using HaplotypeCaller
gatk,gatk_01,gatk_01_06,goal_oriented,I want to call germline variants from a BAM file using HaplotypeCaller
gatk,gatk_01,gatk_01_07,expert,call germline variants BAM file HaplotypeCaller
gatk,gatk_01,gatk_01_08,detailed,I have data that I need to process: call germline variants from a BAM file using HaplotypeCaller
gatk,gatk_01,gatk_01_09,informal,"Hey, can you help me call germline variants from a BAM file using HaplotypeCaller?"
gatk,gatk_01,gatk_01_10,alternative,Perform: call germline variants from a BAM file using HaplotypeCaller
gatk,gatk_02,gatk_02_01,original,genotype a single sample directly (not GVCF mode)
gatk,gatk_02,gatk_02_02,beginner,How do I genotype a single sample directly (not GVCF mode)?
gatk,gatk_02,gatk_02_03,student,I need to genotype a single sample directly (not GVCF mode)
gatk,gatk_02,gatk_02_04,polite,Please genotype a single sample directly (not GVCF mode)
gatk,gatk_02,gatk_02_05,sysadmin,Use gatk to genotype a single sample directly (not GVCF mode)
gatk,gatk_02,gatk_02_06,goal_oriented,I want to genotype a single sample directly (not GVCF mode)
gatk,gatk_02,gatk_02_07,expert,genotype single sample directly (not GVCF mode)
gatk,gatk_02,gatk_02_08,detailed,I have data that I need to process: genotype a single sample directly (not GVCF mode)
gatk,gatk_02,gatk_02_09,informal,"Hey, can you help me genotype a single sample directly (not GVCF mode)?"
gatk,gatk_02,gatk_02_10,alternative,Perform: genotype a single sample directly (not GVCF mode)
gatk,gatk_03,gatk_03_01,original,mark PCR duplicates in a BAM file
gatk,gatk_03,gatk_03_02,beginner,How do I mark PCR duplicates in a BAM file?
gatk,gatk_03,gatk_03_03,student,I need to mark PCR duplicates in a BAM file
gatk,gatk_03,gatk_03_04,polite,Please mark PCR duplicates in a BAM file
gatk,gatk_03,gatk_03_05,sysadmin,Use gatk to mark PCR duplicates in a BAM file
gatk,gatk_03,gatk_03_06,goal_oriented,I want to mark PCR duplicates in a BAM file
gatk,gatk_03,gatk_03_07,expert,mark PCR duplicates BAM file
gatk,gatk_03,gatk_03_08,detailed,I have data that I need to process: mark PCR duplicates in a BAM file
gatk,gatk_03,gatk_03_09,informal,"Hey, can you help me mark PCR duplicates in a BAM file?"
gatk,gatk_03,gatk_03_10,alternative,Perform: mark PCR duplicates in a BAM file
gatk,gatk_04,gatk_04_01,original,call somatic mutations with Mutect2 using matched normal
gatk,gatk_04,gatk_04_02,beginner,How do I call somatic mutations with Mutect2 using matched normal?
gatk,gatk_04,gatk_04_03,student,I need to call somatic mutations with Mutect2 using matched normal
gatk,gatk_04,gatk_04_04,polite,Please call somatic mutations with Mutect2 using matched normal
gatk,gatk_04,gatk_04_05,sysadmin,Use gatk to call somatic mutations with Mutect2 using matched normal
gatk,gatk_04,gatk_04_06,goal_oriented,I want to call somatic mutations with Mutect2 using matched normal
gatk,gatk_04,gatk_04_07,expert,call somatic mutations Mutect2 matched normal
gatk,gatk_04,gatk_04_08,detailed,I have data that I need to process: call somatic mutations with Mutect2 using matched normal
gatk,gatk_04,gatk_04_09,informal,"Hey, can you help me call somatic mutations with Mutect2 using matched normal?"
gatk,gatk_04,gatk_04_10,alternative,"With Mutect2 using matched normal, call somatic mutations"
gatk,gatk_05,gatk_05_01,original,filter Mutect2 variants with FilterMutectCalls
gatk,gatk_05,gatk_05_02,beginner,How do I filter Mutect2 variants with FilterMutectCalls?
gatk,gatk_05,gatk_05_03,student,I need to filter Mutect2 variants with FilterMutectCalls
gatk,gatk_05,gatk_05_04,polite,Please filter Mutect2 variants with FilterMutectCalls
gatk,gatk_05,gatk_05_05,sysadmin,Use gatk to filter Mutect2 variants with FilterMutectCalls
gatk,gatk_05,gatk_05_06,goal_oriented,I want to filter Mutect2 variants with FilterMutectCalls
gatk,gatk_05,gatk_05_07,expert,filter Mutect2 variants FilterMutectCalls
gatk,gatk_05,gatk_05_08,detailed,I have data that I need to process: filter Mutect2 variants with FilterMutectCalls
gatk,gatk_05,gatk_05_09,informal,"Hey, can you help me filter Mutect2 variants with FilterMutectCalls?"
gatk,gatk_05,gatk_05_10,alternative,"With FilterMutectCalls, filter Mutect2 variants"
gatk,gatk_06,gatk_06_01,original,create a sequence dictionary for a reference FASTA
gatk,gatk_06,gatk_06_02,beginner,How do I create a sequence dictionary for a reference FASTA?
gatk,gatk_06,gatk_06_03,student,I need to create a sequence dictionary for a reference FASTA
gatk,gatk_06,gatk_06_04,polite,Please create a sequence dictionary for a reference FASTA
gatk,gatk_06,gatk_06_05,sysadmin,Use gatk to create a sequence dictionary for a reference FASTA
gatk,gatk_06,gatk_06_06,goal_oriented,I want to create a sequence dictionary for a reference FASTA
gatk,gatk_06,gatk_06_07,expert,create sequence dictionary reference FASTA
gatk,gatk_06,gatk_06_08,detailed,I have data that I need to process: create a sequence dictionary for a reference FASTA
gatk,gatk_06,gatk_06_09,informal,"Hey, can you help me create a sequence dictionary for a reference FASTA?"
gatk,gatk_06,gatk_06_10,alternative,Perform: create a sequence dictionary for a reference FASTA
gatk,gatk_07,gatk_07_01,original,add read group to a BAM file (required before GATK variant calling)
gatk,gatk_07,gatk_07_02,beginner,How do I add read group to a BAM file (required before GATK variant calling)?
gatk,gatk_07,gatk_07_03,student,I need to add read group to a BAM file (required before GATK variant calling)
gatk,gatk_07,gatk_07_04,polite,Please add read group to a BAM file (required before GATK variant calling)
gatk,gatk_07,gatk_07_05,sysadmin,Use gatk to add read group to a BAM file (required before GATK variant calling)
gatk,gatk_07,gatk_07_06,goal_oriented,I want to add read group to a BAM file (required before GATK variant calling)
gatk,gatk_07,gatk_07_07,expert,add read group BAM file (required before GATK variant calling)
gatk,gatk_07,gatk_07_08,detailed,I have data that I need to process: add read group to a BAM file (required before GATK variant calling)
gatk,gatk_07,gatk_07_09,informal,"Hey, can you help me add read group to a BAM file (required before GATK variant calling)?"
gatk,gatk_07,gatk_07_10,alternative,Output a BAM file (required before GATK variant calling) by performing: add read group
gatk,gatk_08,gatk_08_01,original,perform base quality score recalibration (BQSR step 1) on markdup BAM with hg38 reference and dbSNP known sites
gatk,gatk_08,gatk_08_02,beginner,How do I perform base quality score recalibration (BQSR step 1) on markdup BAM with hg38 reference and dbSNP known sites?
gatk,gatk_08,gatk_08_03,student,I need to perform base quality score recalibration (BQSR step 1) on markdup BAM with hg38 reference and dbSNP known sites
gatk,gatk_08,gatk_08_04,polite,Please perform base quality score recalibration (BQSR step 1) on markdup BAM with hg38 reference and dbSNP known sites
gatk,gatk_08,gatk_08_05,sysadmin,Use gatk to perform base quality score recalibration (BQSR step 1) on markdup BAM with hg38 reference and dbSNP known sites
gatk,gatk_08,gatk_08_06,goal_oriented,I want to perform base quality score recalibration (BQSR step 1) on markdup BAM with hg38 reference and dbSNP known sites
gatk,gatk_08,gatk_08_07,expert,perform base quality score recalibration (BQSR step 1) on markdup BAM hg38 reference dbSNP known sites
gatk,gatk_08,gatk_08_08,detailed,I have data that I need to process: perform base quality score recalibration (BQSR step 1) on markdup BAM with hg38 reference and dbSNP known sites
gatk,gatk_08,gatk_08_09,informal,"Hey, can you help me perform base quality score recalibration (BQSR step 1) on markdup BAM with hg38 reference and dbSNP known sites?"
gatk,gatk_08,gatk_08_10,alternative,DbSNP known sites after perform base quality score recalibration (BQSR step 1) on markdup BAM with hg38 reference
gatk,gatk_09,gatk_09_01,original,apply base quality score recalibration (BQSR step 2) to produce recalibrated BAM
gatk,gatk_09,gatk_09_02,beginner,How do I apply base quality score recalibration (BQSR step 2) to produce recalibrated BAM?
gatk,gatk_09,gatk_09_03,student,I need to apply base quality score recalibration (BQSR step 2) to produce recalibrated BAM
gatk,gatk_09,gatk_09_04,polite,Please apply base quality score recalibration (BQSR step 2) to produce recalibrated BAM
gatk,gatk_09,gatk_09_05,sysadmin,Use gatk to apply base quality score recalibration (BQSR step 2) to produce recalibrated BAM
gatk,gatk_09,gatk_09_06,goal_oriented,I want to apply base quality score recalibration (BQSR step 2) to produce recalibrated BAM
gatk,gatk_09,gatk_09_07,expert,apply base quality score recalibration (BQSR step 2) produce recalibrated BAM
gatk,gatk_09,gatk_09_08,detailed,I have data that I need to process: apply base quality score recalibration (BQSR step 2) to produce recalibrated BAM
gatk,gatk_09,gatk_09_09,informal,"Hey, can you help me apply base quality score recalibration (BQSR step 2) to produce recalibrated BAM?"
gatk,gatk_09,gatk_09_10,alternative,Output produce recalibrated BAM by performing: apply base quality score recalibration (BQSR step 2)
gatk,gatk_10,gatk_10_01,original,select only SNPs from a variants VCF
gatk,gatk_10,gatk_10_02,beginner,How do I select only SNPs from a variants VCF?
gatk,gatk_10,gatk_10_03,student,I need to select only SNPs from a variants VCF
gatk,gatk_10,gatk_10_04,polite,Please select only SNPs from a variants VCF
gatk,gatk_10,gatk_10_05,sysadmin,Use gatk to select only SNPs from a variants VCF
gatk,gatk_10,gatk_10_06,goal_oriented,I want to select only SNPs from a variants VCF
gatk,gatk_10,gatk_10_07,expert,select only SNPs variants VCF
gatk,gatk_10,gatk_10_08,detailed,I have data that I need to process: select only SNPs from a variants VCF
gatk,gatk_10,gatk_10_09,informal,"Hey, can you help me select only SNPs from a variants VCF?"
gatk,gatk_10,gatk_10_10,alternative,Perform: select only SNPs from a variants VCF
git,git_01,git_01_01,original,clone a repository with shallow history (last commit only) on a specific branch
git,git_01,git_01_02,beginner,How do I clone a repository with shallow history (last commit only) on a specific branch?
git,git_01,git_01_03,student,I need to clone a repository with shallow history (last commit only) on a specific branch
git,git_01,git_01_04,polite,Please clone a repository with shallow history (last commit only) on a specific branch
git,git_01,git_01_05,sysadmin,Use git to clone a repository with shallow history (last commit only) on a specific branch
git,git_01,git_01_06,goal_oriented,I want to clone a repository with shallow history (last commit only) on a specific branch
git,git_01,git_01_07,expert,clone repository shallow history (last commit only) on specific branch
git,git_01,git_01_08,detailed,I have data that I need to process: clone a repository with shallow history (last commit only) on a specific branch
git,git_01,git_01_09,informal,"Hey, can you help me clone a repository with shallow history (last commit only) on a specific branch?"
git,git_01,git_01_10,alternative,"With shallow history (last commit only) on a specific branch, clone a repository"
git,git_02,git_02_01,original,stage all changes and commit with a message
git,git_02,git_02_02,beginner,How do I stage all changes and commit with a message?
git,git_02,git_02_03,student,I need to stage all changes and commit with a message
git,git_02,git_02_04,polite,Please stage all changes and commit with a message
git,git_02,git_02_05,sysadmin,Use git to stage all changes and commit with a message
git,git_02,git_02_06,goal_oriented,I want to stage all changes and commit with a message
git,git_02,git_02_07,expert,stage all changes commit message
git,git_02,git_02_08,detailed,I have data that I need to process: stage all changes and commit with a message
git,git_02,git_02_09,informal,"Hey, can you help me stage all changes and commit with a message?"
git,git_02,git_02_10,alternative,Commit with a message after stage all changes
git,git_03,git_03_01,original,push the current branch to origin and set upstream tracking
git,git_03,git_03_02,beginner,How do I push the current branch to origin and set upstream tracking?
git,git_03,git_03_03,student,I need to push the current branch to origin and set upstream tracking
git,git_03,git_03_04,polite,Please push the current branch to origin and set upstream tracking
git,git_03,git_03_05,sysadmin,Use git to push the current branch to origin and set upstream tracking
git,git_03,git_03_06,goal_oriented,I want to push the current branch to origin and set upstream tracking
git,git_03,git_03_07,expert,push current branch origin set upstream tracking
git,git_03,git_03_08,detailed,I have data that I need to process: push the current branch to origin and set upstream tracking
git,git_03,git_03_09,informal,"Hey, can you help me push the current branch to origin and set upstream tracking?"
git,git_03,git_03_10,alternative,Set upstream tracking after push the current branch to origin
git,git_04,git_04_01,original,create and switch to a new branch
git,git_04,git_04_02,beginner,How do I create and switch to a new branch?
git,git_04,git_04_03,student,I need to create and switch to a new branch
git,git_04,git_04_04,polite,Please create and switch to a new branch
git,git_04,git_04_05,sysadmin,Use git to create and switch to a new branch
git,git_04,git_04_06,goal_oriented,I want to create and switch to a new branch
git,git_04,git_04_07,expert,create switch new branch
git,git_04,git_04_08,detailed,I have data that I need to process: create and switch to a new branch
git,git_04,git_04_09,informal,"Hey, can you help me create and switch to a new branch?"
git,git_04,git_04_10,alternative,Switch to a new branch after create
git,git_05,git_05_01,original,view the commit log with one-line summaries and branch graph
git,git_05,git_05_02,beginner,How do I view the commit log with one-line summaries and branch graph?
git,git_05,git_05_03,student,I need to view the commit log with one-line summaries and branch graph
git,git_05,git_05_04,polite,Please view the commit log with one-line summaries and branch graph
git,git_05,git_05_05,sysadmin,Use git to view the commit log with one-line summaries and branch graph
git,git_05,git_05_06,goal_oriented,I want to view the commit log with one-line summaries and branch graph
git,git_05,git_05_07,expert,view commit log one-line summaries branch graph
git,git_05,git_05_08,detailed,I have data that I need to process: view the commit log with one-line summaries and branch graph
git,git_05,git_05_09,informal,"Hey, can you help me view the commit log with one-line summaries and branch graph?"
git,git_05,git_05_10,alternative,Branch graph after view the commit log with one-line summaries
git,git_06,git_06_01,original,show unstaged and staged changes
git,git_06,git_06_02,beginner,How do I show unstaged and staged changes?
git,git_06,git_06_03,student,I need to show unstaged and staged changes
git,git_06,git_06_04,polite,Please show unstaged and staged changes
git,git_06,git_06_05,sysadmin,Use git to show unstaged and staged changes
git,git_06,git_06_06,goal_oriented,I want to show unstaged and staged changes
git,git_06,git_06_07,expert,show unstaged staged changes
git,git_06,git_06_08,detailed,I have data that I need to process: show unstaged and staged changes
git,git_06,git_06_09,informal,"Hey, can you help me show unstaged and staged changes?"
git,git_06,git_06_10,alternative,Staged changes after show unstaged
git,git_07,git_07_01,original,stash current working tree changes to switch branches cleanly
git,git_07,git_07_02,beginner,How do I stash current working tree changes to switch branches cleanly?
git,git_07,git_07_03,student,I need to stash current working tree changes to switch branches cleanly
git,git_07,git_07_04,polite,Please stash current working tree changes to switch branches cleanly
git,git_07,git_07_05,sysadmin,Use git to stash current working tree changes to switch branches cleanly
git,git_07,git_07_06,goal_oriented,I want to stash current working tree changes to switch branches cleanly
git,git_07,git_07_07,expert,stash current working tree changes switch branches cleanly
git,git_07,git_07_08,detailed,I have data that I need to process: stash current working tree changes to switch branches cleanly
git,git_07,git_07_09,informal,"Hey, can you help me stash current working tree changes to switch branches cleanly?"
git,git_07,git_07_10,alternative,Output switch branches cleanly by performing: stash current working tree changes
git,git_08,git_08_01,original,rebase current branch onto main to update with upstream changes
git,git_08,git_08_02,beginner,How do I rebase current branch onto main to update with upstream changes?
git,git_08,git_08_03,student,I need to rebase current branch onto main to update with upstream changes
git,git_08,git_08_04,polite,Please rebase current branch onto main to update with upstream changes
git,git_08,git_08_05,sysadmin,Use git to rebase current branch onto main to update with upstream changes
git,git_08,git_08_06,goal_oriented,I want to rebase current branch onto main to update with upstream changes
git,git_08,git_08_07,expert,rebase current branch onto main update upstream changes
git,git_08,git_08_08,detailed,I have data that I need to process: rebase current branch onto main to update with upstream changes
git,git_08,git_08_09,informal,"Hey, can you help me rebase current branch onto main to update with upstream changes?"
git,git_08,git_08_10,alternative,"With upstream changes, rebase current branch onto main to update"
git,git_09,git_09_01,original,stop tracking a file without deleting it from disk
git,git_09,git_09_02,beginner,How do I stop tracking a file without deleting it from disk?
git,git_09,git_09_03,student,I need to stop tracking a file without deleting it from disk
git,git_09,git_09_04,polite,Please stop tracking a file without deleting it from disk
git,git_09,git_09_05,sysadmin,Use git to stop tracking a file without deleting it from disk
git,git_09,git_09_06,goal_oriented,I want to stop tracking a file without deleting it from disk
git,git_09,git_09_07,expert,stop tracking file without deleting it disk
git,git_09,git_09_08,detailed,I have data that I need to process: stop tracking a file without deleting it from disk
git,git_09,git_09_09,informal,"Hey, can you help me stop tracking a file without deleting it from disk?"
git,git_09,git_09_10,alternative,Perform: stop tracking a file without deleting it from disk
git,git_10,git_10_01,original,pull latest changes from remote and rebase local commits on top
git,git_10,git_10_02,beginner,How do I pull latest changes from remote and rebase local commits on top?
git,git_10,git_10_03,student,I need to pull latest changes from remote and rebase local commits on top
git,git_10,git_10_04,polite,Please pull latest changes from remote and rebase local commits on top
git,git_10,git_10_05,sysadmin,Use git to pull latest changes from remote and rebase local commits on top
git,git_10,git_10_06,goal_oriented,I want to pull latest changes from remote and rebase local commits on top
git,git_10,git_10_07,expert,pull latest changes remote rebase local commits on top
git,git_10,git_10_08,detailed,I have data that I need to process: pull latest changes from remote and rebase local commits on top
git,git_10,git_10_09,informal,"Hey, can you help me pull latest changes from remote and rebase local commits on top?"
git,git_10,git_10_10,alternative,Rebase local commits on top after pull latest changes from remote
grep,grep_01,grep_01_01,original,"search for a keyword in a file, ignoring case, with line numbers"
grep,grep_01,grep_01_02,beginner,"How do I search for a keyword in a file, ignoring case, with line numbers?"
grep,grep_01,grep_01_03,student,"I need to search for a keyword in a file, ignoring case, with line numbers"
grep,grep_01,grep_01_04,polite,"Please search for a keyword in a file, ignoring case, with line numbers"
grep,grep_01,grep_01_05,sysadmin,"Use grep to search for a keyword in a file, ignoring case, with line numbers"
grep,grep_01,grep_01_06,goal_oriented,"I want to search for a keyword in a file, ignoring case, with line numbers"
grep,grep_01,grep_01_07,expert,"search keyword file, ignoring case, line numbers"
grep,grep_01,grep_01_08,detailed,"I have data that I need to process: search for a keyword in a file, ignoring case, with line numbers"
grep,grep_01,grep_01_09,informal,"Hey, can you help me search for a keyword in a file, ignoring case, with line numbers?"
grep,grep_01,grep_01_10,alternative,"With line numbers, search for a keyword in a file, ignoring case,"
grep,grep_02,grep_02_01,original,recursively search all Python files for a function definition
grep,grep_02,grep_02_02,beginner,How do I recursively search all Python files for a function definition?
grep,grep_02,grep_02_03,student,I need to recursively search all Python files for a function definition
grep,grep_02,grep_02_04,polite,Please recursively search all Python files for a function definition
grep,grep_02,grep_02_05,sysadmin,Use grep to recursively search all Python files for a function definition
grep,grep_02,grep_02_06,goal_oriented,I want to recursively search all Python files for a function definition
grep,grep_02,grep_02_07,expert,recursively search all Python files function definition
grep,grep_02,grep_02_08,detailed,I have data that I need to process: recursively search all Python files for a function definition
grep,grep_02,grep_02_09,informal,"Hey, can you help me recursively search all Python files for a function definition?"
grep,grep_02,grep_02_10,alternative,Perform: recursively search all Python files for a function definition
grep,grep_03,grep_03_01,original,show context lines around each match
grep,grep_03,grep_03_02,beginner,How do I show context lines around each match?
grep,grep_03,grep_03_03,student,I need to show context lines around each match
grep,grep_03,grep_03_04,polite,Please show context lines around each match
grep,grep_03,grep_03_05,sysadmin,Use grep to show context lines around each match
grep,grep_03,grep_03_06,goal_oriented,I want to show context lines around each match
grep,grep_03,grep_03_07,expert,show context lines around each match
grep,grep_03,grep_03_08,detailed,I have data that I need to process: show context lines around each match
grep,grep_03,grep_03_09,informal,"Hey, can you help me show context lines around each match?"
grep,grep_03,grep_03_10,alternative,Perform: show context lines around each match
grep,grep_04,grep_04_01,original,count the number of matching lines in a file
grep,grep_04,grep_04_02,beginner,How do I count the number of matching lines in a file?
grep,grep_04,grep_04_03,student,I need to count the number of matching lines in a file
grep,grep_04,grep_04_04,polite,Please count the number of matching lines in a file
grep,grep_04,grep_04_05,sysadmin,Use grep to count the number of matching lines in a file
grep,grep_04,grep_04_06,goal_oriented,I want to count the number of matching lines in a file
grep,grep_04,grep_04_07,expert,count number of matching lines file
grep,grep_04,grep_04_08,detailed,I have data that I need to process: count the number of matching lines in a file
grep,grep_04,grep_04_09,informal,"Hey, can you help me count the number of matching lines in a file?"
grep,grep_04,grep_04_10,alternative,Perform: count the number of matching lines in a file
grep,grep_05,grep_05_01,original,search for multiple patterns using extended regex
grep,grep_05,grep_05_02,beginner,How do I search for multiple patterns using extended regex?
grep,grep_05,grep_05_03,student,I need to search for multiple patterns using extended regex
grep,grep_05,grep_05_04,polite,Please search for multiple patterns using extended regex
grep,grep_05,grep_05_05,sysadmin,Use grep to search for multiple patterns using extended regex
grep,grep_05,grep_05_06,goal_oriented,I want to search for multiple patterns using extended regex
grep,grep_05,grep_05_07,expert,search multiple patterns extended regex
grep,grep_05,grep_05_08,detailed,I have data that I need to process: search for multiple patterns using extended regex
grep,grep_05,grep_05_09,informal,"Hey, can you help me search for multiple patterns using extended regex?"
grep,grep_05,grep_05_10,alternative,Perform: search for multiple patterns using extended regex
grep,grep_06,grep_06_01,original,find files containing a pattern (list filenames only)
grep,grep_06,grep_06_02,beginner,How do I find files containing a pattern (list filenames only)?
grep,grep_06,grep_06_03,student,I need to find files containing a pattern (list filenames only)
grep,grep_06,grep_06_04,polite,Please find files containing a pattern (list filenames only)
grep,grep_06,grep_06_05,sysadmin,Use grep to find files containing a pattern (list filenames only)
grep,grep_06,grep_06_06,goal_oriented,I want to find files containing a pattern (list filenames only)
grep,grep_06,grep_06_07,expert,find files containing pattern (list filenames only)
grep,grep_06,grep_06_08,detailed,I have data that I need to process: find files containing a pattern (list filenames only)
grep,grep_06,grep_06_09,informal,"Hey, can you help me find files containing a pattern (list filenames only)?"
grep,grep_06,grep_06_10,alternative,Perform: find files containing a pattern (list filenames only)
grep,grep_07,grep_07_01,original,invert match: show lines that do NOT contain a pattern
grep,grep_07,grep_07_02,beginner,How do I invert match: show lines that do NOT contain a pattern?
grep,grep_07,grep_07_03,student,I need to invert match: show lines that do NOT contain a pattern
grep,grep_07,grep_07_04,polite,Please invert match: show lines that do NOT contain a pattern
grep,grep_07,grep_07_05,sysadmin,Use grep to invert match: show lines that do NOT contain a pattern
grep,grep_07,grep_07_06,goal_oriented,I want to invert match: show lines that do NOT contain a pattern
grep,grep_07,grep_07_07,expert,invert match: show lines that do NOT contain pattern
grep,grep_07,grep_07_08,detailed,I have data that I need to process: invert match: show lines that do NOT contain a pattern
grep,grep_07,grep_07_09,informal,"Hey, can you help me invert match: show lines that do NOT contain a pattern?"
grep,grep_07,grep_07_10,alternative,Perform: invert match: show lines that do NOT contain a pattern
grep,grep_08,grep_08_01,original,extract only the matching part of each line
grep,grep_08,grep_08_02,beginner,How do I extract only the matching part of each line?
grep,grep_08,grep_08_03,student,I need to extract only the matching part of each line
grep,grep_08,grep_08_04,polite,Please extract only the matching part of each line
grep,grep_08,grep_08_05,sysadmin,Use grep to extract only the matching part of each line
grep,grep_08,grep_08_06,goal_oriented,I want to extract only the matching part of each line
grep,grep_08,grep_08_07,expert,extract only matching part of each line
grep,grep_08,grep_08_08,detailed,I have data that I need to process: extract only the matching part of each line
grep,grep_08,grep_08_09,informal,"Hey, can you help me extract only the matching part of each line?"
grep,grep_08,grep_08_10,alternative,Perform: extract only the matching part of each line
grep,grep_09,grep_09_01,original,search in multiple files and show filename with each match
grep,grep_09,grep_09_02,beginner,How do I search in multiple files and show filename with each match?
grep,grep_09,grep_09_03,student,I need to search in multiple files and show filename with each match
grep,grep_09,grep_09_04,polite,Please search in multiple files and show filename with each match
grep,grep_09,grep_09_05,sysadmin,Use grep to search in multiple files and show filename with each match
grep,grep_09,grep_09_06,goal_oriented,I want to search in multiple files and show filename with each match
grep,grep_09,grep_09_07,expert,search multiple files show filename each match
grep,grep_09,grep_09_08,detailed,I have data that I need to process: search in multiple files and show filename with each match
grep,grep_09,grep_09_09,informal,"Hey, can you help me search in multiple files and show filename with each match?"
grep,grep_09,grep_09_10,alternative,Show filename with each match after search in multiple files
grep,grep_10,grep_10_01,original,search for a fixed string (no regex interpretation)
grep,grep_10,grep_10_02,beginner,How do I search for a fixed string (no regex interpretation)?
grep,grep_10,grep_10_03,student,I need to search for a fixed string (no regex interpretation)
grep,grep_10,grep_10_04,polite,Please search for a fixed string (no regex interpretation)
grep,grep_10,grep_10_05,sysadmin,Use grep to search for a fixed string (no regex interpretation)
grep,grep_10,grep_10_06,goal_oriented,I want to search for a fixed string (no regex interpretation)
grep,grep_10,grep_10_07,expert,search fixed string (no regex interpretation)
grep,grep_10,grep_10_08,detailed,I have data that I need to process: search for a fixed string (no regex interpretation)
grep,grep_10,grep_10_09,informal,"Hey, can you help me search for a fixed string (no regex interpretation)?"
grep,grep_10,grep_10_10,alternative,Perform: search for a fixed string (no regex interpretation)
gtdbtk,gtdbtk_01,gtdbtk_01_01,original,classify a directory of genome bins with GTDB-Tk
gtdbtk,gtdbtk_01,gtdbtk_01_02,beginner,How do I classify a directory of genome bins with GTDB-Tk?
gtdbtk,gtdbtk_01,gtdbtk_01_03,student,I need to classify a directory of genome bins with GTDB-Tk
gtdbtk,gtdbtk_01,gtdbtk_01_04,polite,Please classify a directory of genome bins with GTDB-Tk
gtdbtk,gtdbtk_01,gtdbtk_01_05,sysadmin,Use gtdbtk to classify a directory of genome bins with GTDB-Tk
gtdbtk,gtdbtk_01,gtdbtk_01_06,goal_oriented,I want to classify a directory of genome bins with GTDB-Tk
gtdbtk,gtdbtk_01,gtdbtk_01_07,expert,classify directory of genome bins GTDB-Tk
gtdbtk,gtdbtk_01,gtdbtk_01_08,detailed,I have data that I need to process: classify a directory of genome bins with GTDB-Tk
gtdbtk,gtdbtk_01,gtdbtk_01_09,informal,"Hey, can you help me classify a directory of genome bins with GTDB-Tk?"
gtdbtk,gtdbtk_01,gtdbtk_01_10,alternative,"With GTDB-Tk, classify a directory of genome bins"
gtdbtk,gtdbtk_02,gtdbtk_02_01,original,classify genomes with custom GTDB database path
gtdbtk,gtdbtk_02,gtdbtk_02_02,beginner,How do I classify genomes with custom GTDB database path?
gtdbtk,gtdbtk_02,gtdbtk_02_03,student,I need to classify genomes with custom GTDB database path
gtdbtk,gtdbtk_02,gtdbtk_02_04,polite,Please classify genomes with custom GTDB database path
gtdbtk,gtdbtk_02,gtdbtk_02_05,sysadmin,Use gtdbtk to classify genomes with custom GTDB database path
gtdbtk,gtdbtk_02,gtdbtk_02_06,goal_oriented,I want to classify genomes with custom GTDB database path
gtdbtk,gtdbtk_02,gtdbtk_02_07,expert,classify genomes custom GTDB database path
gtdbtk,gtdbtk_02,gtdbtk_02_08,detailed,I have data that I need to process: classify genomes with custom GTDB database path
gtdbtk,gtdbtk_02,gtdbtk_02_09,informal,"Hey, can you help me classify genomes with custom GTDB database path?"
gtdbtk,gtdbtk_02,gtdbtk_02_10,alternative,"With custom GTDB database path, classify genomes"
gtdbtk,gtdbtk_03,gtdbtk_03_01,original,run only the identification step (marker gene identification)
gtdbtk,gtdbtk_03,gtdbtk_03_02,beginner,How do I run only the identification step (marker gene identification)?
gtdbtk,gtdbtk_03,gtdbtk_03_03,student,I need to run only the identification step (marker gene identification)
gtdbtk,gtdbtk_03,gtdbtk_03_04,polite,Please run only the identification step (marker gene identification)
gtdbtk,gtdbtk_03,gtdbtk_03_05,sysadmin,Use gtdbtk to run only the identification step (marker gene identification)
gtdbtk,gtdbtk_03,gtdbtk_03_06,goal_oriented,I want to run only the identification step (marker gene identification)
gtdbtk,gtdbtk_03,gtdbtk_03_07,expert,run only identification step (marker gene identification)
gtdbtk,gtdbtk_03,gtdbtk_03_08,detailed,I have data that I need to process: run only the identification step (marker gene identification)
gtdbtk,gtdbtk_03,gtdbtk_03_09,informal,"Hey, can you help me run only the identification step (marker gene identification)?"
gtdbtk,gtdbtk_03,gtdbtk_03_10,alternative,Perform: run only the identification step (marker gene identification)
gtdbtk,gtdbtk_04,gtdbtk_04_01,original,classify a directory of genome bins with GTDB-Tk in quiet mode
gtdbtk,gtdbtk_04,gtdbtk_04_02,beginner,How do I classify a directory of genome bins with GTDB-Tk in quiet mode?
gtdbtk,gtdbtk_04,gtdbtk_04_03,student,I need to classify a directory of genome bins with GTDB-Tk in quiet mode
gtdbtk,gtdbtk_04,gtdbtk_04_04,polite,Please classify a directory of genome bins with GTDB-Tk in quiet mode
gtdbtk,gtdbtk_04,gtdbtk_04_05,sysadmin,Use gtdbtk to classify a directory of genome bins with GTDB-Tk in quiet mode
gtdbtk,gtdbtk_04,gtdbtk_04_06,goal_oriented,I want to classify a directory of genome bins with GTDB-Tk in quiet mode
gtdbtk,gtdbtk_04,gtdbtk_04_07,expert,classify directory of genome bins GTDB-Tk quiet mode
gtdbtk,gtdbtk_04,gtdbtk_04_08,detailed,I have data that I need to process: classify a directory of genome bins with GTDB-Tk in quiet mode
gtdbtk,gtdbtk_04,gtdbtk_04_09,informal,"Hey, can you help me classify a directory of genome bins with GTDB-Tk in quiet mode?"
gtdbtk,gtdbtk_04,gtdbtk_04_10,alternative,"With GTDB-Tk in quiet mode, classify a directory of genome bins"
gtdbtk,gtdbtk_05,gtdbtk_05_01,original,classify genomes with custom GTDB database path with default parameters
gtdbtk,gtdbtk_05,gtdbtk_05_02,beginner,How do I classify genomes with custom GTDB database path with default parameters?
gtdbtk,gtdbtk_05,gtdbtk_05_03,student,I need to classify genomes with custom GTDB database path with default parameters
gtdbtk,gtdbtk_05,gtdbtk_05_04,polite,Please classify genomes with custom GTDB database path with default parameters
gtdbtk,gtdbtk_05,gtdbtk_05_05,sysadmin,Use gtdbtk to classify genomes with custom GTDB database path with default parameters
gtdbtk,gtdbtk_05,gtdbtk_05_06,goal_oriented,I want to classify genomes with custom GTDB database path with default parameters
gtdbtk,gtdbtk_05,gtdbtk_05_07,expert,classify genomes custom GTDB database path default parameters
gtdbtk,gtdbtk_05,gtdbtk_05_08,detailed,I have data that I need to process: classify genomes with custom GTDB database path with default parameters
gtdbtk,gtdbtk_05,gtdbtk_05_09,informal,"Hey, can you help me classify genomes with custom GTDB database path with default parameters?"
gtdbtk,gtdbtk_05,gtdbtk_05_10,alternative,"With custom GTDB database path with default parameters, classify genomes"
gtdbtk,gtdbtk_06,gtdbtk_06_01,original,run only the identification step (marker gene identification) with verbose output
gtdbtk,gtdbtk_06,gtdbtk_06_02,beginner,How do I run only the identification step (marker gene identification) with verbose output?
gtdbtk,gtdbtk_06,gtdbtk_06_03,student,I need to run only the identification step (marker gene identification) with verbose output
gtdbtk,gtdbtk_06,gtdbtk_06_04,polite,Please run only the identification step (marker gene identification) with verbose output
gtdbtk,gtdbtk_06,gtdbtk_06_05,sysadmin,Use gtdbtk to run only the identification step (marker gene identification) with verbose output
gtdbtk,gtdbtk_06,gtdbtk_06_06,goal_oriented,I want to run only the identification step (marker gene identification) with verbose output
gtdbtk,gtdbtk_06,gtdbtk_06_07,expert,run only identification step (marker gene identification) verbose output
gtdbtk,gtdbtk_06,gtdbtk_06_08,detailed,I have data that I need to process: run only the identification step (marker gene identification) with verbose output
gtdbtk,gtdbtk_06,gtdbtk_06_09,informal,"Hey, can you help me run only the identification step (marker gene identification) with verbose output?"
gtdbtk,gtdbtk_06,gtdbtk_06_10,alternative,"With verbose output, run only the identification step (marker gene identification)"
gtdbtk,gtdbtk_07,gtdbtk_07_01,original,classify a directory of genome bins with GTDB-Tk using multiple threads
gtdbtk,gtdbtk_07,gtdbtk_07_02,beginner,How do I classify a directory of genome bins with GTDB-Tk using multiple threads?
gtdbtk,gtdbtk_07,gtdbtk_07_03,student,I need to classify a directory of genome bins with GTDB-Tk using multiple threads
gtdbtk,gtdbtk_07,gtdbtk_07_04,polite,Please classify a directory of genome bins with GTDB-Tk using multiple threads
gtdbtk,gtdbtk_07,gtdbtk_07_05,sysadmin,Use gtdbtk to classify a directory of genome bins with GTDB-Tk using multiple threads
gtdbtk,gtdbtk_07,gtdbtk_07_06,goal_oriented,I want to classify a directory of genome bins with GTDB-Tk using multiple threads
gtdbtk,gtdbtk_07,gtdbtk_07_07,expert,classify directory of genome bins GTDB-Tk multiple threads
gtdbtk,gtdbtk_07,gtdbtk_07_08,detailed,"I have data that I need to process: classify a directory of genome bins with GTDB-Tk using multiple threads, utilizing multiple CPU threads for speed"
gtdbtk,gtdbtk_07,gtdbtk_07_09,informal,"Hey, can you help me classify a directory of genome bins with GTDB-Tk using multiple threads?"
gtdbtk,gtdbtk_07,gtdbtk_07_10,alternative,"With GTDB-Tk using multiple threads, classify a directory of genome bins"
gtdbtk,gtdbtk_08,gtdbtk_08_01,original,classify genomes with custom GTDB database path and write output to a file
gtdbtk,gtdbtk_08,gtdbtk_08_02,beginner,How do I classify genomes with custom GTDB database path and write output to a file?
gtdbtk,gtdbtk_08,gtdbtk_08_03,student,I need to classify genomes with custom GTDB database path and write output to a file
gtdbtk,gtdbtk_08,gtdbtk_08_04,polite,Please classify genomes with custom GTDB database path and write output to a file
gtdbtk,gtdbtk_08,gtdbtk_08_05,sysadmin,Use gtdbtk to classify genomes with custom GTDB database path and write output to a file
gtdbtk,gtdbtk_08,gtdbtk_08_06,goal_oriented,I want to classify genomes with custom GTDB database path and write output to a file
gtdbtk,gtdbtk_08,gtdbtk_08_07,expert,classify genomes custom GTDB database path write output file
gtdbtk,gtdbtk_08,gtdbtk_08_08,detailed,"I have data that I need to process: classify genomes with custom GTDB database path and write output to a file, saving the result to a specified output file"
gtdbtk,gtdbtk_08,gtdbtk_08_09,informal,"Hey, can you help me classify genomes with custom GTDB database path and write output to a file?"
gtdbtk,gtdbtk_08,gtdbtk_08_10,alternative,Write output to a file after classify genomes with custom GTDB database path
gtdbtk,gtdbtk_09,gtdbtk_09_01,original,run only the identification step (marker gene identification) in quiet mode
gtdbtk,gtdbtk_09,gtdbtk_09_02,beginner,How do I run only the identification step (marker gene identification) in quiet mode?
gtdbtk,gtdbtk_09,gtdbtk_09_03,student,I need to run only the identification step (marker gene identification) in quiet mode
gtdbtk,gtdbtk_09,gtdbtk_09_04,polite,Please run only the identification step (marker gene identification) in quiet mode
gtdbtk,gtdbtk_09,gtdbtk_09_05,sysadmin,Use gtdbtk to run only the identification step (marker gene identification) in quiet mode
gtdbtk,gtdbtk_09,gtdbtk_09_06,goal_oriented,I want to run only the identification step (marker gene identification) in quiet mode
gtdbtk,gtdbtk_09,gtdbtk_09_07,expert,run only identification step (marker gene identification) quiet mode
gtdbtk,gtdbtk_09,gtdbtk_09_08,detailed,I have data that I need to process: run only the identification step (marker gene identification) in quiet mode
gtdbtk,gtdbtk_09,gtdbtk_09_09,informal,"Hey, can you help me run only the identification step (marker gene identification) in quiet mode?"
gtdbtk,gtdbtk_09,gtdbtk_09_10,alternative,Perform: run only the identification step (marker gene identification) in quiet mode
gtdbtk,gtdbtk_10,gtdbtk_10_01,original,classify a directory of genome bins with GTDB-Tk with default parameters
gtdbtk,gtdbtk_10,gtdbtk_10_02,beginner,How do I classify a directory of genome bins with GTDB-Tk with default parameters?
gtdbtk,gtdbtk_10,gtdbtk_10_03,student,I need to classify a directory of genome bins with GTDB-Tk with default parameters
gtdbtk,gtdbtk_10,gtdbtk_10_04,polite,Please classify a directory of genome bins with GTDB-Tk with default parameters
gtdbtk,gtdbtk_10,gtdbtk_10_05,sysadmin,Use gtdbtk to classify a directory of genome bins with GTDB-Tk with default parameters
gtdbtk,gtdbtk_10,gtdbtk_10_06,goal_oriented,I want to classify a directory of genome bins with GTDB-Tk with default parameters
gtdbtk,gtdbtk_10,gtdbtk_10_07,expert,classify directory of genome bins GTDB-Tk default parameters
gtdbtk,gtdbtk_10,gtdbtk_10_08,detailed,I have data that I need to process: classify a directory of genome bins with GTDB-Tk with default parameters
gtdbtk,gtdbtk_10,gtdbtk_10_09,informal,"Hey, can you help me classify a directory of genome bins with GTDB-Tk with default parameters?"
gtdbtk,gtdbtk_10,gtdbtk_10_10,alternative,"With GTDB-Tk with default parameters, classify a directory of genome bins"
hap_py,hap_py_01,hap_py_01_01,original,benchmark a variant caller VCF against GIAB truth set
hap_py,hap_py_01,hap_py_01_02,beginner,How do I benchmark a variant caller VCF against GIAB truth set?
hap_py,hap_py_01,hap_py_01_03,student,I need to benchmark a variant caller VCF against GIAB truth set
hap_py,hap_py_01,hap_py_01_04,polite,Please benchmark a variant caller VCF against GIAB truth set
hap_py,hap_py_01,hap_py_01_05,sysadmin,Use hap_py to benchmark a variant caller VCF against GIAB truth set
hap_py,hap_py_01,hap_py_01_06,goal_oriented,I want to benchmark a variant caller VCF against GIAB truth set
hap_py,hap_py_01,hap_py_01_07,expert,benchmark variant caller VCF against GIAB truth set
hap_py,hap_py_01,hap_py_01_08,detailed,"I have data that I need to process: benchmark a variant caller VCF against GIAB truth set, utilizing multiple CPU threads for speed, saving the result to a specified output file"
hap_py,hap_py_01,hap_py_01_09,informal,"Hey, can you help me benchmark a variant caller VCF against GIAB truth set?"
hap_py,hap_py_01,hap_py_01_10,alternative,Perform: benchmark a variant caller VCF against GIAB truth set
hap_py,hap_py_02,hap_py_02_01,original,benchmark with Stratification for SNPs and indels separately
hap_py,hap_py_02,hap_py_02_02,beginner,How do I benchmark with Stratification for SNPs and indels separately?
hap_py,hap_py_02,hap_py_02_03,student,I need to benchmark with Stratification for SNPs and indels separately
hap_py,hap_py_02,hap_py_02_04,polite,Please benchmark with Stratification for SNPs and indels separately
hap_py,hap_py_02,hap_py_02_05,sysadmin,Use hap_py to benchmark with Stratification for SNPs and indels separately
hap_py,hap_py_02,hap_py_02_06,goal_oriented,I want to benchmark with Stratification for SNPs and indels separately
hap_py,hap_py_02,hap_py_02_07,expert,benchmark Stratification SNPs indels separately
hap_py,hap_py_02,hap_py_02_08,detailed,"I have data that I need to process: benchmark with Stratification for SNPs and indels separately, utilizing multiple CPU threads for speed, saving the result to a specified output file"
hap_py,hap_py_02,hap_py_02_09,informal,"Hey, can you help me benchmark with Stratification for SNPs and indels separately?"
hap_py,hap_py_02,hap_py_02_10,alternative,Indels separately after benchmark with Stratification for SNPs
hap_py,hap_py_03,hap_py_03_01,original,benchmark a variant caller VCF against GIAB truth set and write output to a file
hap_py,hap_py_03,hap_py_03_02,beginner,How do I benchmark a variant caller VCF against GIAB truth set and write output to a file?
hap_py,hap_py_03,hap_py_03_03,student,I need to benchmark a variant caller VCF against GIAB truth set and write output to a file
hap_py,hap_py_03,hap_py_03_04,polite,Please benchmark a variant caller VCF against GIAB truth set and write output to a file
hap_py,hap_py_03,hap_py_03_05,sysadmin,Use hap_py to benchmark a variant caller VCF against GIAB truth set and write output to a file
hap_py,hap_py_03,hap_py_03_06,goal_oriented,I want to benchmark a variant caller VCF against GIAB truth set and write output to a file
hap_py,hap_py_03,hap_py_03_07,expert,benchmark variant caller VCF against GIAB truth set write output file
hap_py,hap_py_03,hap_py_03_08,detailed,"I have data that I need to process: benchmark a variant caller VCF against GIAB truth set and write output to a file, utilizing multiple CPU threads for speed, saving the result to a specified output file"
hap_py,hap_py_03,hap_py_03_09,informal,"Hey, can you help me benchmark a variant caller VCF against GIAB truth set and write output to a file?"
hap_py,hap_py_03,hap_py_03_10,alternative,Write output to a file after benchmark a variant caller VCF against GIAB truth set
hap_py,hap_py_04,hap_py_04_01,original,benchmark with Stratification for SNPs and indels separately in quiet mode
hap_py,hap_py_04,hap_py_04_02,beginner,How do I benchmark with Stratification for SNPs and indels separately in quiet mode?
hap_py,hap_py_04,hap_py_04_03,student,I need to benchmark with Stratification for SNPs and indels separately in quiet mode
hap_py,hap_py_04,hap_py_04_04,polite,Please benchmark with Stratification for SNPs and indels separately in quiet mode
hap_py,hap_py_04,hap_py_04_05,sysadmin,Use hap_py to benchmark with Stratification for SNPs and indels separately in quiet mode
hap_py,hap_py_04,hap_py_04_06,goal_oriented,I want to benchmark with Stratification for SNPs and indels separately in quiet mode
hap_py,hap_py_04,hap_py_04_07,expert,benchmark Stratification SNPs indels separately quiet mode
hap_py,hap_py_04,hap_py_04_08,detailed,"I have data that I need to process: benchmark with Stratification for SNPs and indels separately in quiet mode, utilizing multiple CPU threads for speed, saving the result to a specified output file"
hap_py,hap_py_04,hap_py_04_09,informal,"Hey, can you help me benchmark with Stratification for SNPs and indels separately in quiet mode?"
hap_py,hap_py_04,hap_py_04_10,alternative,Indels separately in quiet mode after benchmark with Stratification for SNPs
hap_py,hap_py_05,hap_py_05_01,original,benchmark a variant caller VCF against GIAB truth set with default parameters
hap_py,hap_py_05,hap_py_05_02,beginner,How do I benchmark a variant caller VCF against GIAB truth set with default parameters?
hap_py,hap_py_05,hap_py_05_03,student,I need to benchmark a variant caller VCF against GIAB truth set with default parameters
hap_py,hap_py_05,hap_py_05_04,polite,Please benchmark a variant caller VCF against GIAB truth set with default parameters
hap_py,hap_py_05,hap_py_05_05,sysadmin,Use hap_py to benchmark a variant caller VCF against GIAB truth set with default parameters
hap_py,hap_py_05,hap_py_05_06,goal_oriented,I want to benchmark a variant caller VCF against GIAB truth set with default parameters
hap_py,hap_py_05,hap_py_05_07,expert,benchmark variant caller VCF against GIAB truth set default parameters
hap_py,hap_py_05,hap_py_05_08,detailed,"I have data that I need to process: benchmark a variant caller VCF against GIAB truth set with default parameters, utilizing multiple CPU threads for speed, saving the result to a specified output file"
hap_py,hap_py_05,hap_py_05_09,informal,"Hey, can you help me benchmark a variant caller VCF against GIAB truth set with default parameters?"
hap_py,hap_py_05,hap_py_05_10,alternative,"With default parameters, benchmark a variant caller VCF against GIAB truth set"
hap_py,hap_py_06,hap_py_06_01,original,benchmark with Stratification for SNPs and indels separately with verbose output
hap_py,hap_py_06,hap_py_06_02,beginner,How do I benchmark with Stratification for SNPs and indels separately with verbose output?
hap_py,hap_py_06,hap_py_06_03,student,I need to benchmark with Stratification for SNPs and indels separately with verbose output
hap_py,hap_py_06,hap_py_06_04,polite,Please benchmark with Stratification for SNPs and indels separately with verbose output
hap_py,hap_py_06,hap_py_06_05,sysadmin,Use hap_py to benchmark with Stratification for SNPs and indels separately with verbose output
hap_py,hap_py_06,hap_py_06_06,goal_oriented,I want to benchmark with Stratification for SNPs and indels separately with verbose output
hap_py,hap_py_06,hap_py_06_07,expert,benchmark Stratification SNPs indels separately verbose output
hap_py,hap_py_06,hap_py_06_08,detailed,"I have data that I need to process: benchmark with Stratification for SNPs and indels separately with verbose output, utilizing multiple CPU threads for speed, saving the result to a specified output file"
hap_py,hap_py_06,hap_py_06_09,informal,"Hey, can you help me benchmark with Stratification for SNPs and indels separately with verbose output?"
hap_py,hap_py_06,hap_py_06_10,alternative,Indels separately with verbose output after benchmark with Stratification for SNPs
hap_py,hap_py_07,hap_py_07_01,original,benchmark a variant caller VCF against GIAB truth set using multiple threads
hap_py,hap_py_07,hap_py_07_02,beginner,How do I benchmark a variant caller VCF against GIAB truth set using multiple threads?
hap_py,hap_py_07,hap_py_07_03,student,I need to benchmark a variant caller VCF against GIAB truth set using multiple threads
hap_py,hap_py_07,hap_py_07_04,polite,Please benchmark a variant caller VCF against GIAB truth set using multiple threads
hap_py,hap_py_07,hap_py_07_05,sysadmin,Use hap_py to benchmark a variant caller VCF against GIAB truth set using multiple threads
hap_py,hap_py_07,hap_py_07_06,goal_oriented,I want to benchmark a variant caller VCF against GIAB truth set using multiple threads
hap_py,hap_py_07,hap_py_07_07,expert,benchmark variant caller VCF against GIAB truth set multiple threads
hap_py,hap_py_07,hap_py_07_08,detailed,"I have data that I need to process: benchmark a variant caller VCF against GIAB truth set using multiple threads, utilizing multiple CPU threads for speed, saving the result to a specified output file"
hap_py,hap_py_07,hap_py_07_09,informal,"Hey, can you help me benchmark a variant caller VCF against GIAB truth set using multiple threads?"
hap_py,hap_py_07,hap_py_07_10,alternative,Perform: benchmark a variant caller VCF against GIAB truth set using multiple threads
hap_py,hap_py_08,hap_py_08_01,original,benchmark with Stratification for SNPs and indels separately and write output to a file
hap_py,hap_py_08,hap_py_08_02,beginner,How do I benchmark with Stratification for SNPs and indels separately and write output to a file?
hap_py,hap_py_08,hap_py_08_03,student,I need to benchmark with Stratification for SNPs and indels separately and write output to a file
hap_py,hap_py_08,hap_py_08_04,polite,Please benchmark with Stratification for SNPs and indels separately and write output to a file
hap_py,hap_py_08,hap_py_08_05,sysadmin,Use hap_py to benchmark with Stratification for SNPs and indels separately and write output to a file
hap_py,hap_py_08,hap_py_08_06,goal_oriented,I want to benchmark with Stratification for SNPs and indels separately and write output to a file
hap_py,hap_py_08,hap_py_08_07,expert,benchmark Stratification SNPs indels separately write output file
hap_py,hap_py_08,hap_py_08_08,detailed,"I have data that I need to process: benchmark with Stratification for SNPs and indels separately and write output to a file, utilizing multiple CPU threads for speed, saving the result to a specified output file"
hap_py,hap_py_08,hap_py_08_09,informal,"Hey, can you help me benchmark with Stratification for SNPs and indels separately and write output to a file?"
hap_py,hap_py_08,hap_py_08_10,alternative,Indels separately and write output to a file after benchmark with Stratification for SNPs
hap_py,hap_py_09,hap_py_09_01,original,benchmark a variant caller VCF against GIAB truth set in quiet mode
hap_py,hap_py_09,hap_py_09_02,beginner,How do I benchmark a variant caller VCF against GIAB truth set in quiet mode?
hap_py,hap_py_09,hap_py_09_03,student,I need to benchmark a variant caller VCF against GIAB truth set in quiet mode
hap_py,hap_py_09,hap_py_09_04,polite,Please benchmark a variant caller VCF against GIAB truth set in quiet mode
hap_py,hap_py_09,hap_py_09_05,sysadmin,Use hap_py to benchmark a variant caller VCF against GIAB truth set in quiet mode
hap_py,hap_py_09,hap_py_09_06,goal_oriented,I want to benchmark a variant caller VCF against GIAB truth set in quiet mode
hap_py,hap_py_09,hap_py_09_07,expert,benchmark variant caller VCF against GIAB truth set quiet mode
hap_py,hap_py_09,hap_py_09_08,detailed,"I have data that I need to process: benchmark a variant caller VCF against GIAB truth set in quiet mode, utilizing multiple CPU threads for speed, saving the result to a specified output file"
hap_py,hap_py_09,hap_py_09_09,informal,"Hey, can you help me benchmark a variant caller VCF against GIAB truth set in quiet mode?"
hap_py,hap_py_09,hap_py_09_10,alternative,Perform: benchmark a variant caller VCF against GIAB truth set in quiet mode
hap_py,hap_py_10,hap_py_10_01,original,benchmark with Stratification for SNPs and indels separately with default parameters
hap_py,hap_py_10,hap_py_10_02,beginner,How do I benchmark with Stratification for SNPs and indels separately with default parameters?
hap_py,hap_py_10,hap_py_10_03,student,I need to benchmark with Stratification for SNPs and indels separately with default parameters
hap_py,hap_py_10,hap_py_10_04,polite,Please benchmark with Stratification for SNPs and indels separately with default parameters
hap_py,hap_py_10,hap_py_10_05,sysadmin,Use hap_py to benchmark with Stratification for SNPs and indels separately with default parameters
hap_py,hap_py_10,hap_py_10_06,goal_oriented,I want to benchmark with Stratification for SNPs and indels separately with default parameters
hap_py,hap_py_10,hap_py_10_07,expert,benchmark Stratification SNPs indels separately default parameters
hap_py,hap_py_10,hap_py_10_08,detailed,"I have data that I need to process: benchmark with Stratification for SNPs and indels separately with default parameters, utilizing multiple CPU threads for speed, saving the result to a specified output file"
hap_py,hap_py_10,hap_py_10_09,informal,"Hey, can you help me benchmark with Stratification for SNPs and indels separately with default parameters?"
hap_py,hap_py_10,hap_py_10_10,alternative,Indels separately with default parameters after benchmark with Stratification for SNPs
hifiasm,hifiasm_01,hifiasm_01_01,original,assemble genome from PacBio HiFi reads
hifiasm,hifiasm_01,hifiasm_01_02,beginner,How do I assemble genome from PacBio HiFi reads?
hifiasm,hifiasm_01,hifiasm_01_03,student,I need to assemble genome from PacBio HiFi reads
hifiasm,hifiasm_01,hifiasm_01_04,polite,Please assemble genome from PacBio HiFi reads
hifiasm,hifiasm_01,hifiasm_01_05,sysadmin,Use hifiasm to assemble genome from PacBio HiFi reads
hifiasm,hifiasm_01,hifiasm_01_06,goal_oriented,I want to assemble genome from PacBio HiFi reads
hifiasm,hifiasm_01,hifiasm_01_07,expert,assemble genome PacBio HiFi reads
hifiasm,hifiasm_01,hifiasm_01_08,detailed,"I have data that I need to process: assemble genome from PacBio HiFi reads, utilizing multiple CPU threads for speed, saving the result to a specified output file"
hifiasm,hifiasm_01,hifiasm_01_09,informal,"Hey, can you help me assemble genome from PacBio HiFi reads?"
hifiasm,hifiasm_01,hifiasm_01_10,alternative,Perform: assemble genome from PacBio HiFi reads
hifiasm,hifiasm_02,hifiasm_02_01,original,haplotype-resolved assembly with Hi-C phasing data
hifiasm,hifiasm_02,hifiasm_02_02,beginner,How do I haplotype-resolved assembly with Hi-C phasing data?
hifiasm,hifiasm_02,hifiasm_02_03,student,I need to haplotype-resolved assembly with Hi-C phasing data
hifiasm,hifiasm_02,hifiasm_02_04,polite,Please haplotype-resolved assembly with Hi-C phasing data
hifiasm,hifiasm_02,hifiasm_02_05,sysadmin,Use hifiasm to haplotype-resolved assembly with Hi-C phasing data
hifiasm,hifiasm_02,hifiasm_02_06,goal_oriented,I want to haplotype-resolved assembly with Hi-C phasing data
hifiasm,hifiasm_02,hifiasm_02_07,expert,haplotype-resolved assembly Hi-C phasing data
hifiasm,hifiasm_02,hifiasm_02_08,detailed,"I have data that I need to process: haplotype-resolved assembly with Hi-C phasing data, utilizing multiple CPU threads for speed, saving the result to a specified output file"
hifiasm,hifiasm_02,hifiasm_02_09,informal,"Hey, can you help me haplotype-resolved assembly with Hi-C phasing data?"
hifiasm,hifiasm_02,hifiasm_02_10,alternative,"With Hi-C phasing data, haplotype-resolved assembly"
hifiasm,hifiasm_03,hifiasm_03_01,original,assemble genome with custom number of haplotype rounds
hifiasm,hifiasm_03,hifiasm_03_02,beginner,How do I assemble genome with custom number of haplotype rounds?
hifiasm,hifiasm_03,hifiasm_03_03,student,I need to assemble genome with custom number of haplotype rounds
hifiasm,hifiasm_03,hifiasm_03_04,polite,Please assemble genome with custom number of haplotype rounds
hifiasm,hifiasm_03,hifiasm_03_05,sysadmin,Use hifiasm to assemble genome with custom number of haplotype rounds
hifiasm,hifiasm_03,hifiasm_03_06,goal_oriented,I want to assemble genome with custom number of haplotype rounds
hifiasm,hifiasm_03,hifiasm_03_07,expert,assemble genome custom number of haplotype rounds
hifiasm,hifiasm_03,hifiasm_03_08,detailed,"I have data that I need to process: assemble genome with custom number of haplotype rounds, utilizing multiple CPU threads for speed, saving the result to a specified output file"
hifiasm,hifiasm_03,hifiasm_03_09,informal,"Hey, can you help me assemble genome with custom number of haplotype rounds?"
hifiasm,hifiasm_03,hifiasm_03_10,alternative,"With custom number of haplotype rounds, assemble genome"
hifiasm,hifiasm_04,hifiasm_04_01,original,assemble with ultra-long ONT reads for improved scaffolding
hifiasm,hifiasm_04,hifiasm_04_02,beginner,How do I assemble with ultra-long ONT reads for improved scaffolding?
hifiasm,hifiasm_04,hifiasm_04_03,student,I need to assemble with ultra-long ONT reads for improved scaffolding
hifiasm,hifiasm_04,hifiasm_04_04,polite,Please assemble with ultra-long ONT reads for improved scaffolding
hifiasm,hifiasm_04,hifiasm_04_05,sysadmin,Use hifiasm to assemble with ultra-long ONT reads for improved scaffolding
hifiasm,hifiasm_04,hifiasm_04_06,goal_oriented,I want to assemble with ultra-long ONT reads for improved scaffolding
hifiasm,hifiasm_04,hifiasm_04_07,expert,assemble ultra-long ONT reads improved scaffolding
hifiasm,hifiasm_04,hifiasm_04_08,detailed,"I have data that I need to process: assemble with ultra-long ONT reads for improved scaffolding, utilizing multiple CPU threads for speed, saving the result to a specified output file"
hifiasm,hifiasm_04,hifiasm_04_09,informal,"Hey, can you help me assemble with ultra-long ONT reads for improved scaffolding?"
hifiasm,hifiasm_04,hifiasm_04_10,alternative,"With ultra-long ONT reads for improved scaffolding, assemble"
hifiasm,hifiasm_05,hifiasm_05_01,original,assemble with aggressive duplicate purging
hifiasm,hifiasm_05,hifiasm_05_02,beginner,How do I assemble with aggressive duplicate purging?
hifiasm,hifiasm_05,hifiasm_05_03,student,I need to assemble with aggressive duplicate purging
hifiasm,hifiasm_05,hifiasm_05_04,polite,Please assemble with aggressive duplicate purging
hifiasm,hifiasm_05,hifiasm_05_05,sysadmin,Use hifiasm to assemble with aggressive duplicate purging
hifiasm,hifiasm_05,hifiasm_05_06,goal_oriented,I want to assemble with aggressive duplicate purging
hifiasm,hifiasm_05,hifiasm_05_07,expert,assemble aggressive duplicate purging
hifiasm,hifiasm_05,hifiasm_05_08,detailed,"I have data that I need to process: assemble with aggressive duplicate purging, utilizing multiple CPU threads for speed, saving the result to a specified output file"
hifiasm,hifiasm_05,hifiasm_05_09,informal,"Hey, can you help me assemble with aggressive duplicate purging?"
hifiasm,hifiasm_05,hifiasm_05_10,alternative,"With aggressive duplicate purging, assemble"
hifiasm,hifiasm_06,hifiasm_06_01,original,assemble genome from PacBio HiFi reads with verbose output
hifiasm,hifiasm_06,hifiasm_06_02,beginner,How do I assemble genome from PacBio HiFi reads with verbose output?
hifiasm,hifiasm_06,hifiasm_06_03,student,I need to assemble genome from PacBio HiFi reads with verbose output
hifiasm,hifiasm_06,hifiasm_06_04,polite,Please assemble genome from PacBio HiFi reads with verbose output
hifiasm,hifiasm_06,hifiasm_06_05,sysadmin,Use hifiasm to assemble genome from PacBio HiFi reads with verbose output
hifiasm,hifiasm_06,hifiasm_06_06,goal_oriented,I want to assemble genome from PacBio HiFi reads with verbose output
hifiasm,hifiasm_06,hifiasm_06_07,expert,assemble genome PacBio HiFi reads verbose output
hifiasm,hifiasm_06,hifiasm_06_08,detailed,"I have data that I need to process: assemble genome from PacBio HiFi reads with verbose output, utilizing multiple CPU threads for speed, saving the result to a specified output file"
hifiasm,hifiasm_06,hifiasm_06_09,informal,"Hey, can you help me assemble genome from PacBio HiFi reads with verbose output?"
hifiasm,hifiasm_06,hifiasm_06_10,alternative,"With verbose output, assemble genome from PacBio HiFi reads"
hifiasm,hifiasm_07,hifiasm_07_01,original,haplotype-resolved assembly with Hi-C phasing data using multiple threads
hifiasm,hifiasm_07,hifiasm_07_02,beginner,How do I haplotype-resolved assembly with Hi-C phasing data using multiple threads?
hifiasm,hifiasm_07,hifiasm_07_03,student,I need to haplotype-resolved assembly with Hi-C phasing data using multiple threads
hifiasm,hifiasm_07,hifiasm_07_04,polite,Please haplotype-resolved assembly with Hi-C phasing data using multiple threads
hifiasm,hifiasm_07,hifiasm_07_05,sysadmin,Use hifiasm to haplotype-resolved assembly with Hi-C phasing data using multiple threads
hifiasm,hifiasm_07,hifiasm_07_06,goal_oriented,I want to haplotype-resolved assembly with Hi-C phasing data using multiple threads
hifiasm,hifiasm_07,hifiasm_07_07,expert,haplotype-resolved assembly Hi-C phasing data multiple threads
hifiasm,hifiasm_07,hifiasm_07_08,detailed,"I have data that I need to process: haplotype-resolved assembly with Hi-C phasing data using multiple threads, utilizing multiple CPU threads for speed, saving the result to a specified output file"
hifiasm,hifiasm_07,hifiasm_07_09,informal,"Hey, can you help me haplotype-resolved assembly with Hi-C phasing data using multiple threads?"
hifiasm,hifiasm_07,hifiasm_07_10,alternative,"With Hi-C phasing data using multiple threads, haplotype-resolved assembly"
hifiasm,hifiasm_08,hifiasm_08_01,original,assemble genome with custom number of haplotype rounds and write output to a file
hifiasm,hifiasm_08,hifiasm_08_02,beginner,How do I assemble genome with custom number of haplotype rounds and write output to a file?
hifiasm,hifiasm_08,hifiasm_08_03,student,I need to assemble genome with custom number of haplotype rounds and write output to a file
hifiasm,hifiasm_08,hifiasm_08_04,polite,Please assemble genome with custom number of haplotype rounds and write output to a file
hifiasm,hifiasm_08,hifiasm_08_05,sysadmin,Use hifiasm to assemble genome with custom number of haplotype rounds and write output to a file
hifiasm,hifiasm_08,hifiasm_08_06,goal_oriented,I want to assemble genome with custom number of haplotype rounds and write output to a file
hifiasm,hifiasm_08,hifiasm_08_07,expert,assemble genome custom number of haplotype rounds write output file
hifiasm,hifiasm_08,hifiasm_08_08,detailed,"I have data that I need to process: assemble genome with custom number of haplotype rounds and write output to a file, utilizing multiple CPU threads for speed, saving the result to a specified output file"
hifiasm,hifiasm_08,hifiasm_08_09,informal,"Hey, can you help me assemble genome with custom number of haplotype rounds and write output to a file?"
hifiasm,hifiasm_08,hifiasm_08_10,alternative,Write output to a file after assemble genome with custom number of haplotype rounds
hifiasm,hifiasm_09,hifiasm_09_01,original,assemble with ultra-long ONT reads for improved scaffolding in quiet mode
hifiasm,hifiasm_09,hifiasm_09_02,beginner,How do I assemble with ultra-long ONT reads for improved scaffolding in quiet mode?
hifiasm,hifiasm_09,hifiasm_09_03,student,I need to assemble with ultra-long ONT reads for improved scaffolding in quiet mode
hifiasm,hifiasm_09,hifiasm_09_04,polite,Please assemble with ultra-long ONT reads for improved scaffolding in quiet mode
hifiasm,hifiasm_09,hifiasm_09_05,sysadmin,Use hifiasm to assemble with ultra-long ONT reads for improved scaffolding in quiet mode
hifiasm,hifiasm_09,hifiasm_09_06,goal_oriented,I want to assemble with ultra-long ONT reads for improved scaffolding in quiet mode
hifiasm,hifiasm_09,hifiasm_09_07,expert,assemble ultra-long ONT reads improved scaffolding quiet mode
hifiasm,hifiasm_09,hifiasm_09_08,detailed,"I have data that I need to process: assemble with ultra-long ONT reads for improved scaffolding in quiet mode, utilizing multiple CPU threads for speed, saving the result to a specified output file"
hifiasm,hifiasm_09,hifiasm_09_09,informal,"Hey, can you help me assemble with ultra-long ONT reads for improved scaffolding in quiet mode?"
hifiasm,hifiasm_09,hifiasm_09_10,alternative,"With ultra-long ONT reads for improved scaffolding in quiet mode, assemble"
hifiasm,hifiasm_10,hifiasm_10_01,original,assemble with aggressive duplicate purging with default parameters
hifiasm,hifiasm_10,hifiasm_10_02,beginner,How do I assemble with aggressive duplicate purging with default parameters?
hifiasm,hifiasm_10,hifiasm_10_03,student,I need to assemble with aggressive duplicate purging with default parameters
hifiasm,hifiasm_10,hifiasm_10_04,polite,Please assemble with aggressive duplicate purging with default parameters
hifiasm,hifiasm_10,hifiasm_10_05,sysadmin,Use hifiasm to assemble with aggressive duplicate purging with default parameters
hifiasm,hifiasm_10,hifiasm_10_06,goal_oriented,I want to assemble with aggressive duplicate purging with default parameters
hifiasm,hifiasm_10,hifiasm_10_07,expert,assemble aggressive duplicate purging default parameters
hifiasm,hifiasm_10,hifiasm_10_08,detailed,"I have data that I need to process: assemble with aggressive duplicate purging with default parameters, utilizing multiple CPU threads for speed, saving the result to a specified output file"
hifiasm,hifiasm_10,hifiasm_10_09,informal,"Hey, can you help me assemble with aggressive duplicate purging with default parameters?"
hifiasm,hifiasm_10,hifiasm_10_10,alternative,"With aggressive duplicate purging with default parameters, assemble"
hisat2,hisat2_01,hisat2_01_01,original,build a HISAT2 genome index from a reference FASTA
hisat2,hisat2_01,hisat2_01_02,beginner,How do I build a HISAT2 genome index from a reference FASTA?
hisat2,hisat2_01,hisat2_01_03,student,I need to build a HISAT2 genome index from a reference FASTA
hisat2,hisat2_01,hisat2_01_04,polite,Please build a HISAT2 genome index from a reference FASTA
hisat2,hisat2_01,hisat2_01_05,sysadmin,Use hisat2 to build a HISAT2 genome index from a reference FASTA
hisat2,hisat2_01,hisat2_01_06,goal_oriented,I want to build a HISAT2 genome index from a reference FASTA
hisat2,hisat2_01,hisat2_01_07,expert,build HISAT2 genome index reference FASTA
hisat2,hisat2_01,hisat2_01_08,detailed,"I have data that I need to process: build a HISAT2 genome index from a reference FASTA, utilizing multiple CPU threads for speed"
hisat2,hisat2_01,hisat2_01_09,informal,"Hey, can you help me build a HISAT2 genome index from a reference FASTA?"
hisat2,hisat2_01,hisat2_01_10,alternative,Perform: build a HISAT2 genome index from a reference FASTA
hisat2,hisat2_02,hisat2_02_01,original,align paired-end RNA-seq reads to the genome with 8 threads
hisat2,hisat2_02,hisat2_02_02,beginner,How do I align paired-end RNA-seq reads to the genome with 8 threads?
hisat2,hisat2_02,hisat2_02_03,student,I need to align paired-end RNA-seq reads to the genome with 8 threads
hisat2,hisat2_02,hisat2_02_04,polite,Please align paired-end RNA-seq reads to the genome with 8 threads
hisat2,hisat2_02,hisat2_02_05,sysadmin,Use hisat2 to align paired-end RNA-seq reads to the genome with 8 threads
hisat2,hisat2_02,hisat2_02_06,goal_oriented,I want to align paired-end RNA-seq reads to the genome with 8 threads
hisat2,hisat2_02,hisat2_02_07,expert,align paired-end RNA-seq reads genome 8 threads
hisat2,hisat2_02,hisat2_02_08,detailed,"I have data that I need to process: align paired-end RNA-seq reads to the genome with 8 threads, utilizing multiple CPU threads for speed"
hisat2,hisat2_02,hisat2_02_09,informal,"Hey, can you help me align paired-end RNA-seq reads to the genome with 8 threads?"
hisat2,hisat2_02,hisat2_02_10,alternative,"With 8 threads, align paired-end RNA-seq reads to the genome"
hisat2,hisat2_03,hisat2_03_01,original,align paired-end RNA-seq reads and output sorted BAM directly
hisat2,hisat2_03,hisat2_03_02,beginner,How do I align paired-end RNA-seq reads and output sorted BAM directly?
hisat2,hisat2_03,hisat2_03_03,student,I need to align paired-end RNA-seq reads and output sorted BAM directly
hisat2,hisat2_03,hisat2_03_04,polite,Please align paired-end RNA-seq reads and output sorted BAM directly
hisat2,hisat2_03,hisat2_03_05,sysadmin,Use hisat2 to align paired-end RNA-seq reads and output sorted BAM directly
hisat2,hisat2_03,hisat2_03_06,goal_oriented,I want to align paired-end RNA-seq reads and output sorted BAM directly
hisat2,hisat2_03,hisat2_03_07,expert,align paired-end RNA-seq reads output sorted BAM directly
hisat2,hisat2_03,hisat2_03_08,detailed,"I have data that I need to process: align paired-end RNA-seq reads and output sorted BAM directly, utilizing multiple CPU threads for speed, saving the result to a specified output file"
hisat2,hisat2_03,hisat2_03_09,informal,"Hey, can you help me align paired-end RNA-seq reads and output sorted BAM directly?"
hisat2,hisat2_03,hisat2_03_10,alternative,Output sorted BAM directly after align paired-end RNA-seq reads
hisat2,hisat2_04,hisat2_04_01,original,align strand-specific paired-end RNA-seq (reverse-strand library)
hisat2,hisat2_04,hisat2_04_02,beginner,How do I align strand-specific paired-end RNA-seq (reverse-strand library)?
hisat2,hisat2_04,hisat2_04_03,student,I need to align strand-specific paired-end RNA-seq (reverse-strand library)
hisat2,hisat2_04,hisat2_04_04,polite,Please align strand-specific paired-end RNA-seq (reverse-strand library)
hisat2,hisat2_04,hisat2_04_05,sysadmin,Use hisat2 to align strand-specific paired-end RNA-seq (reverse-strand library)
hisat2,hisat2_04,hisat2_04_06,goal_oriented,I want to align strand-specific paired-end RNA-seq (reverse-strand library)
hisat2,hisat2_04,hisat2_04_07,expert,align strand-specific paired-end RNA-seq (reverse-strand library)
hisat2,hisat2_04,hisat2_04_08,detailed,"I have data that I need to process: align strand-specific paired-end RNA-seq (reverse-strand library), utilizing multiple CPU threads for speed"
hisat2,hisat2_04,hisat2_04_09,informal,"Hey, can you help me align strand-specific paired-end RNA-seq (reverse-strand library)?"
hisat2,hisat2_04,hisat2_04_10,alternative,Perform: align strand-specific paired-end RNA-seq (reverse-strand library)
hisat2,hisat2_05,hisat2_05_01,original,align single-end RNA-seq reads
hisat2,hisat2_05,hisat2_05_02,beginner,How do I align single-end RNA-seq reads?
hisat2,hisat2_05,hisat2_05_03,student,I need to align single-end RNA-seq reads
hisat2,hisat2_05,hisat2_05_04,polite,Please align single-end RNA-seq reads
hisat2,hisat2_05,hisat2_05_05,sysadmin,Use hisat2 to align single-end RNA-seq reads
hisat2,hisat2_05,hisat2_05_06,goal_oriented,I want to align single-end RNA-seq reads
hisat2,hisat2_05,hisat2_05_07,expert,align single-end RNA-seq reads
hisat2,hisat2_05,hisat2_05_08,detailed,"I have data that I need to process: align single-end RNA-seq reads, utilizing multiple CPU threads for speed"
hisat2,hisat2_05,hisat2_05_09,informal,"Hey, can you help me align single-end RNA-seq reads?"
hisat2,hisat2_05,hisat2_05_10,alternative,Perform: align single-end RNA-seq reads
hisat2,hisat2_06,hisat2_06_01,original,build splice-site aware index using GTF annotation for improved RNA-seq
hisat2,hisat2_06,hisat2_06_02,beginner,How do I build splice-site aware index using GTF annotation for improved RNA-seq?
hisat2,hisat2_06,hisat2_06_03,student,I need to build splice-site aware index using GTF annotation for improved RNA-seq
hisat2,hisat2_06,hisat2_06_04,polite,Please build splice-site aware index using GTF annotation for improved RNA-seq
hisat2,hisat2_06,hisat2_06_05,sysadmin,Use hisat2 to build splice-site aware index using GTF annotation for improved RNA-seq
hisat2,hisat2_06,hisat2_06_06,goal_oriented,I want to build splice-site aware index using GTF annotation for improved RNA-seq
hisat2,hisat2_06,hisat2_06_07,expert,build splice-site aware index GTF annotation improved RNA-seq
hisat2,hisat2_06,hisat2_06_08,detailed,"I have data that I need to process: build splice-site aware index using GTF annotation for improved RNA-seq, utilizing multiple CPU threads for speed"
hisat2,hisat2_06,hisat2_06_09,informal,"Hey, can you help me build splice-site aware index using GTF annotation for improved RNA-seq?"
hisat2,hisat2_06,hisat2_06_10,alternative,Perform: build splice-site aware index using GTF annotation for improved RNA-seq
hisat2,hisat2_07,hisat2_07_01,original,align paired-end reads with strand information and save alignment statistics
hisat2,hisat2_07,hisat2_07_02,beginner,How do I align paired-end reads with strand information and save alignment statistics?
hisat2,hisat2_07,hisat2_07_03,student,I need to align paired-end reads with strand information and save alignment statistics
hisat2,hisat2_07,hisat2_07_04,polite,Please align paired-end reads with strand information and save alignment statistics
hisat2,hisat2_07,hisat2_07_05,sysadmin,Use hisat2 to align paired-end reads with strand information and save alignment statistics
hisat2,hisat2_07,hisat2_07_06,goal_oriented,I want to align paired-end reads with strand information and save alignment statistics
hisat2,hisat2_07,hisat2_07_07,expert,align paired-end reads strand information save alignment statistics
hisat2,hisat2_07,hisat2_07_08,detailed,"I have data that I need to process: align paired-end reads with strand information and save alignment statistics, utilizing multiple CPU threads for speed"
hisat2,hisat2_07,hisat2_07_09,informal,"Hey, can you help me align paired-end reads with strand information and save alignment statistics?"
hisat2,hisat2_07,hisat2_07_10,alternative,Save alignment statistics after align paired-end reads with strand information
hisat2,hisat2_08,hisat2_08_01,original,align single-end reads in genomic (non-spliced) mode for DNA-seq
hisat2,hisat2_08,hisat2_08_02,beginner,How do I align single-end reads in genomic (non-spliced) mode for DNA-seq?
hisat2,hisat2_08,hisat2_08_03,student,I need to align single-end reads in genomic (non-spliced) mode for DNA-seq
hisat2,hisat2_08,hisat2_08_04,polite,Please align single-end reads in genomic (non-spliced) mode for DNA-seq
hisat2,hisat2_08,hisat2_08_05,sysadmin,Use hisat2 to align single-end reads in genomic (non-spliced) mode for DNA-seq
hisat2,hisat2_08,hisat2_08_06,goal_oriented,I want to align single-end reads in genomic (non-spliced) mode for DNA-seq
hisat2,hisat2_08,hisat2_08_07,expert,align single-end reads genomic (non-spliced) mode DNA-seq
hisat2,hisat2_08,hisat2_08_08,detailed,"I have data that I need to process: align single-end reads in genomic (non-spliced) mode for DNA-seq, utilizing multiple CPU threads for speed"
hisat2,hisat2_08,hisat2_08_09,informal,"Hey, can you help me align single-end reads in genomic (non-spliced) mode for DNA-seq?"
hisat2,hisat2_08,hisat2_08_10,alternative,Perform: align single-end reads in genomic (non-spliced) mode for DNA-seq
hisat2,hisat2_09,hisat2_09_01,original,align paired-end reads and discard unmapped reads
hisat2,hisat2_09,hisat2_09_02,beginner,How do I align paired-end reads and discard unmapped reads?
hisat2,hisat2_09,hisat2_09_03,student,I need to align paired-end reads and discard unmapped reads
hisat2,hisat2_09,hisat2_09_04,polite,Please align paired-end reads and discard unmapped reads
hisat2,hisat2_09,hisat2_09_05,sysadmin,Use hisat2 to align paired-end reads and discard unmapped reads
hisat2,hisat2_09,hisat2_09_06,goal_oriented,I want to align paired-end reads and discard unmapped reads
hisat2,hisat2_09,hisat2_09_07,expert,align paired-end reads discard unmapped reads
hisat2,hisat2_09,hisat2_09_08,detailed,"I have data that I need to process: align paired-end reads and discard unmapped reads, utilizing multiple CPU threads for speed"
hisat2,hisat2_09,hisat2_09_09,informal,"Hey, can you help me align paired-end reads and discard unmapped reads?"
hisat2,hisat2_09,hisat2_09_10,alternative,Discard unmapped reads after align paired-end reads
hisat2,hisat2_10,hisat2_10_01,original,align paired-end reads and output only uniquely mapped reads
hisat2,hisat2_10,hisat2_10_02,beginner,How do I align paired-end reads and output only uniquely mapped reads?
hisat2,hisat2_10,hisat2_10_03,student,I need to align paired-end reads and output only uniquely mapped reads
hisat2,hisat2_10,hisat2_10_04,polite,Please align paired-end reads and output only uniquely mapped reads
hisat2,hisat2_10,hisat2_10_05,sysadmin,Use hisat2 to align paired-end reads and output only uniquely mapped reads
hisat2,hisat2_10,hisat2_10_06,goal_oriented,I want to align paired-end reads and output only uniquely mapped reads
hisat2,hisat2_10,hisat2_10_07,expert,align paired-end reads output only uniquely mapped reads
hisat2,hisat2_10,hisat2_10_08,detailed,"I have data that I need to process: align paired-end reads and output only uniquely mapped reads, utilizing multiple CPU threads for speed, saving the result to a specified output file"
hisat2,hisat2_10,hisat2_10_09,informal,"Hey, can you help me align paired-end reads and output only uniquely mapped reads?"
hisat2,hisat2_10,hisat2_10_10,alternative,Output only uniquely mapped reads after align paired-end reads
hmmer,hmmer_01,hmmer_01_01,original,search a protein database against Pfam HMM profiles (domain annotation)
hmmer,hmmer_01,hmmer_01_02,beginner,How do I search a protein database against Pfam HMM profiles (domain annotation)?
hmmer,hmmer_01,hmmer_01_03,student,I need to search a protein database against Pfam HMM profiles (domain annotation)
hmmer,hmmer_01,hmmer_01_04,polite,Please search a protein database against Pfam HMM profiles (domain annotation)
hmmer,hmmer_01,hmmer_01_05,sysadmin,Use hmmer to search a protein database against Pfam HMM profiles (domain annotation)
hmmer,hmmer_01,hmmer_01_06,goal_oriented,I want to search a protein database against Pfam HMM profiles (domain annotation)
hmmer,hmmer_01,hmmer_01_07,expert,search protein database against Pfam HMM profiles (domain annotation)
hmmer,hmmer_01,hmmer_01_08,detailed,I have data that I need to process: search a protein database against Pfam HMM profiles (domain annotation)
hmmer,hmmer_01,hmmer_01_09,informal,"Hey, can you help me search a protein database against Pfam HMM profiles (domain annotation)?"
hmmer,hmmer_01,hmmer_01_10,alternative,Perform: search a protein database against Pfam HMM profiles (domain annotation)
hmmer,hmmer_02,hmmer_02_01,original,search a protein HMM profile against a sequence database
hmmer,hmmer_02,hmmer_02_02,beginner,How do I search a protein HMM profile against a sequence database?
hmmer,hmmer_02,hmmer_02_03,student,I need to search a protein HMM profile against a sequence database
hmmer,hmmer_02,hmmer_02_04,polite,Please search a protein HMM profile against a sequence database
hmmer,hmmer_02,hmmer_02_05,sysadmin,Use hmmer to search a protein HMM profile against a sequence database
hmmer,hmmer_02,hmmer_02_06,goal_oriented,I want to search a protein HMM profile against a sequence database
hmmer,hmmer_02,hmmer_02_07,expert,search protein HMM profile against sequence database
hmmer,hmmer_02,hmmer_02_08,detailed,I have data that I need to process: search a protein HMM profile against a sequence database
hmmer,hmmer_02,hmmer_02_09,informal,"Hey, can you help me search a protein HMM profile against a sequence database?"
hmmer,hmmer_02,hmmer_02_10,alternative,Perform: search a protein HMM profile against a sequence database
hmmer,hmmer_03,hmmer_03_01,original,build a profile HMM from a multiple sequence alignment
hmmer,hmmer_03,hmmer_03_02,beginner,How do I build a profile HMM from a multiple sequence alignment?
hmmer,hmmer_03,hmmer_03_03,student,I need to build a profile HMM from a multiple sequence alignment
hmmer,hmmer_03,hmmer_03_04,polite,Please build a profile HMM from a multiple sequence alignment
hmmer,hmmer_03,hmmer_03_05,sysadmin,Use hmmer to build a profile HMM from a multiple sequence alignment
hmmer,hmmer_03,hmmer_03_06,goal_oriented,I want to build a profile HMM from a multiple sequence alignment
hmmer,hmmer_03,hmmer_03_07,expert,build profile HMM multiple sequence alignment
hmmer,hmmer_03,hmmer_03_08,detailed,I have data that I need to process: build a profile HMM from a multiple sequence alignment
hmmer,hmmer_03,hmmer_03_09,informal,"Hey, can you help me build a profile HMM from a multiple sequence alignment?"
hmmer,hmmer_03,hmmer_03_10,alternative,Perform: build a profile HMM from a multiple sequence alignment
hmmer,hmmer_04,hmmer_04_01,original,press Pfam database for hmmscan indexing
hmmer,hmmer_04,hmmer_04_02,beginner,How do I press Pfam database for hmmscan indexing?
hmmer,hmmer_04,hmmer_04_03,student,I need to press Pfam database for hmmscan indexing
hmmer,hmmer_04,hmmer_04_04,polite,Please press Pfam database for hmmscan indexing
hmmer,hmmer_04,hmmer_04_05,sysadmin,Use hmmer to press Pfam database for hmmscan indexing
hmmer,hmmer_04,hmmer_04_06,goal_oriented,I want to press Pfam database for hmmscan indexing
hmmer,hmmer_04,hmmer_04_07,expert,press Pfam database hmmscan indexing
hmmer,hmmer_04,hmmer_04_08,detailed,I have data that I need to process: press Pfam database for hmmscan indexing
hmmer,hmmer_04,hmmer_04_09,informal,"Hey, can you help me press Pfam database for hmmscan indexing?"
hmmer,hmmer_04,hmmer_04_10,alternative,Perform: press Pfam database for hmmscan indexing
hmmer,hmmer_05,hmmer_05_01,original,search proteins with phmmer (BLAST-like single sequence query)
hmmer,hmmer_05,hmmer_05_02,beginner,How do I search proteins with phmmer (BLAST-like single sequence query)?
hmmer,hmmer_05,hmmer_05_03,student,I need to search proteins with phmmer (BLAST-like single sequence query)
hmmer,hmmer_05,hmmer_05_04,polite,Please search proteins with phmmer (BLAST-like single sequence query)
hmmer,hmmer_05,hmmer_05_05,sysadmin,Use hmmer to search proteins with phmmer (BLAST-like single sequence query)
hmmer,hmmer_05,hmmer_05_06,goal_oriented,I want to search proteins with phmmer (BLAST-like single sequence query)
hmmer,hmmer_05,hmmer_05_07,expert,search proteins phmmer (BLAST-like single sequence query)
hmmer,hmmer_05,hmmer_05_08,detailed,I have data that I need to process: search proteins with phmmer (BLAST-like single sequence query)
hmmer,hmmer_05,hmmer_05_09,informal,"Hey, can you help me search proteins with phmmer (BLAST-like single sequence query)?"
hmmer,hmmer_05,hmmer_05_10,alternative,"With phmmer (BLAST-like single sequence query), search proteins"
hmmer,hmmer_06,hmmer_06_01,original,search a protein database against Pfam HMM profiles (domain annotation)
hmmer,hmmer_06,hmmer_06_02,beginner,How do I search a protein database against Pfam HMM profiles (domain annotation)?
hmmer,hmmer_06,hmmer_06_03,student,I need to search a protein database against Pfam HMM profiles (domain annotation)
hmmer,hmmer_06,hmmer_06_04,polite,Please search a protein database against Pfam HMM profiles (domain annotation)
hmmer,hmmer_06,hmmer_06_05,sysadmin,Use hmmer to search a protein database against Pfam HMM profiles (domain annotation)
hmmer,hmmer_06,hmmer_06_06,goal_oriented,I want to search a protein database against Pfam HMM profiles (domain annotation)
hmmer,hmmer_06,hmmer_06_07,expert,search protein database against Pfam HMM profiles (domain annotation)
hmmer,hmmer_06,hmmer_06_08,detailed,I have data that I need to process: search a protein database against Pfam HMM profiles (domain annotation)
hmmer,hmmer_06,hmmer_06_09,informal,"Hey, can you help me search a protein database against Pfam HMM profiles (domain annotation)?"
hmmer,hmmer_06,hmmer_06_10,alternative,Perform: search a protein database against Pfam HMM profiles (domain annotation)
hmmer,hmmer_07,hmmer_07_01,original,search a protein HMM profile against a sequence database
hmmer,hmmer_07,hmmer_07_02,beginner,How do I search a protein HMM profile against a sequence database?
hmmer,hmmer_07,hmmer_07_03,student,I need to search a protein HMM profile against a sequence database
hmmer,hmmer_07,hmmer_07_04,polite,Please search a protein HMM profile against a sequence database
hmmer,hmmer_07,hmmer_07_05,sysadmin,Use hmmer to search a protein HMM profile against a sequence database
hmmer,hmmer_07,hmmer_07_06,goal_oriented,I want to search a protein HMM profile against a sequence database
hmmer,hmmer_07,hmmer_07_07,expert,search protein HMM profile against sequence database
hmmer,hmmer_07,hmmer_07_08,detailed,I have data that I need to process: search a protein HMM profile against a sequence database
hmmer,hmmer_07,hmmer_07_09,informal,"Hey, can you help me search a protein HMM profile against a sequence database?"
hmmer,hmmer_07,hmmer_07_10,alternative,Perform: search a protein HMM profile against a sequence database
hmmer,hmmer_08,hmmer_08_01,original,build a profile HMM from a multiple sequence alignment and write output to a file
hmmer,hmmer_08,hmmer_08_02,beginner,How do I build a profile HMM from a multiple sequence alignment and write output to a file?
hmmer,hmmer_08,hmmer_08_03,student,I need to build a profile HMM from a multiple sequence alignment and write output to a file
hmmer,hmmer_08,hmmer_08_04,polite,Please build a profile HMM from a multiple sequence alignment and write output to a file
hmmer,hmmer_08,hmmer_08_05,sysadmin,Use hmmer to build a profile HMM from a multiple sequence alignment and write output to a file
hmmer,hmmer_08,hmmer_08_06,goal_oriented,I want to build a profile HMM from a multiple sequence alignment and write output to a file
hmmer,hmmer_08,hmmer_08_07,expert,build profile HMM multiple sequence alignment write output file
hmmer,hmmer_08,hmmer_08_08,detailed,"I have data that I need to process: build a profile HMM from a multiple sequence alignment and write output to a file, saving the result to a specified output file"
hmmer,hmmer_08,hmmer_08_09,informal,"Hey, can you help me build a profile HMM from a multiple sequence alignment and write output to a file?"
hmmer,hmmer_08,hmmer_08_10,alternative,Write output to a file after build a profile HMM from a multiple sequence alignment
hmmer,hmmer_09,hmmer_09_01,original,press Pfam database for hmmscan indexing in quiet mode
hmmer,hmmer_09,hmmer_09_02,beginner,How do I press Pfam database for hmmscan indexing in quiet mode?
hmmer,hmmer_09,hmmer_09_03,student,I need to press Pfam database for hmmscan indexing in quiet mode
hmmer,hmmer_09,hmmer_09_04,polite,Please press Pfam database for hmmscan indexing in quiet mode
hmmer,hmmer_09,hmmer_09_05,sysadmin,Use hmmer to press Pfam database for hmmscan indexing in quiet mode
hmmer,hmmer_09,hmmer_09_06,goal_oriented,I want to press Pfam database for hmmscan indexing in quiet mode
hmmer,hmmer_09,hmmer_09_07,expert,press Pfam database hmmscan indexing quiet mode
hmmer,hmmer_09,hmmer_09_08,detailed,I have data that I need to process: press Pfam database for hmmscan indexing in quiet mode
hmmer,hmmer_09,hmmer_09_09,informal,"Hey, can you help me press Pfam database for hmmscan indexing in quiet mode?"
hmmer,hmmer_09,hmmer_09_10,alternative,Perform: press Pfam database for hmmscan indexing in quiet mode
hmmer,hmmer_10,hmmer_10_01,original,search proteins with phmmer (BLAST-like single sequence query) with default parameters
hmmer,hmmer_10,hmmer_10_02,beginner,How do I search proteins with phmmer (BLAST-like single sequence query) with default parameters?
hmmer,hmmer_10,hmmer_10_03,student,I need to search proteins with phmmer (BLAST-like single sequence query) with default parameters
hmmer,hmmer_10,hmmer_10_04,polite,Please search proteins with phmmer (BLAST-like single sequence query) with default parameters
hmmer,hmmer_10,hmmer_10_05,sysadmin,Use hmmer to search proteins with phmmer (BLAST-like single sequence query) with default parameters
hmmer,hmmer_10,hmmer_10_06,goal_oriented,I want to search proteins with phmmer (BLAST-like single sequence query) with default parameters
hmmer,hmmer_10,hmmer_10_07,expert,search proteins phmmer (BLAST-like single sequence query) default parameters
hmmer,hmmer_10,hmmer_10_08,detailed,I have data that I need to process: search proteins with phmmer (BLAST-like single sequence query) with default parameters
hmmer,hmmer_10,hmmer_10_09,informal,"Hey, can you help me search proteins with phmmer (BLAST-like single sequence query) with default parameters?"
hmmer,hmmer_10,hmmer_10_10,alternative,"With phmmer (BLAST-like single sequence query) with default parameters, search proteins"
homer,homer_01,homer_01_01,original,create a HOMER tag directory from a BAM file
homer,homer_01,homer_01_02,beginner,How do I create a HOMER tag directory from a BAM file?
homer,homer_01,homer_01_03,student,I need to create a HOMER tag directory from a BAM file
homer,homer_01,homer_01_04,polite,Please create a HOMER tag directory from a BAM file
homer,homer_01,homer_01_05,sysadmin,Use homer to create a HOMER tag directory from a BAM file
homer,homer_01,homer_01_06,goal_oriented,I want to create a HOMER tag directory from a BAM file
homer,homer_01,homer_01_07,expert,create HOMER tag directory BAM file
homer,homer_01,homer_01_08,detailed,I have data that I need to process: create a HOMER tag directory from a BAM file
homer,homer_01,homer_01_09,informal,"Hey, can you help me create a HOMER tag directory from a BAM file?"
homer,homer_01,homer_01_10,alternative,Perform: create a HOMER tag directory from a BAM file
homer,homer_02,homer_02_01,original,call narrow transcription factor peaks with an input control
homer,homer_02,homer_02_02,beginner,How do I call narrow transcription factor peaks with an input control?
homer,homer_02,homer_02_03,student,I need to call narrow transcription factor peaks with an input control
homer,homer_02,homer_02_04,polite,Please call narrow transcription factor peaks with an input control
homer,homer_02,homer_02_05,sysadmin,Use homer to call narrow transcription factor peaks with an input control
homer,homer_02,homer_02_06,goal_oriented,I want to call narrow transcription factor peaks with an input control
homer,homer_02,homer_02_07,expert,call narrow transcription factor peaks input control
homer,homer_02,homer_02_08,detailed,"I have data that I need to process: call narrow transcription factor peaks with an input control, saving the result to a specified output file"
homer,homer_02,homer_02_09,informal,"Hey, can you help me call narrow transcription factor peaks with an input control?"
homer,homer_02,homer_02_10,alternative,"With an input control, call narrow transcription factor peaks"
homer,homer_03,homer_03_01,original,"call broad histone modification peaks (e.g., H3K27me3)"
homer,homer_03,homer_03_02,beginner,"How do I call broad histone modification peaks (e.g., H3K27me3)?"
homer,homer_03,homer_03_03,student,"I need to call broad histone modification peaks (e.g., H3K27me3)"
homer,homer_03,homer_03_04,polite,"Please call broad histone modification peaks (e.g., H3K27me3)"
homer,homer_03,homer_03_05,sysadmin,"Use homer to call broad histone modification peaks (e.g., H3K27me3)"
homer,homer_03,homer_03_06,goal_oriented,"I want to call broad histone modification peaks (e.g., H3K27me3)"
homer,homer_03,homer_03_07,expert,"call broad histone modification peaks (e.g., H3K27me3)"
homer,homer_03,homer_03_08,detailed,"I have data that I need to process: call broad histone modification peaks (e.g., H3K27me3), saving the result to a specified output file"
homer,homer_03,homer_03_09,informal,"Hey, can you help me call broad histone modification peaks (e.g., H3K27me3)?"
homer,homer_03,homer_03_10,alternative,"Perform: call broad histone modification peaks (e.g., H3K27me3)"
homer,homer_04,homer_04_01,original,annotate peaks with genomic features using hg38 RefSeq annotation
homer,homer_04,homer_04_02,beginner,How do I annotate peaks with genomic features using hg38 RefSeq annotation?
homer,homer_04,homer_04_03,student,I need to annotate peaks with genomic features using hg38 RefSeq annotation
homer,homer_04,homer_04_04,polite,Please annotate peaks with genomic features using hg38 RefSeq annotation
homer,homer_04,homer_04_05,sysadmin,Use homer to annotate peaks with genomic features using hg38 RefSeq annotation
homer,homer_04,homer_04_06,goal_oriented,I want to annotate peaks with genomic features using hg38 RefSeq annotation
homer,homer_04,homer_04_07,expert,annotate peaks genomic features hg38 RefSeq annotation
homer,homer_04,homer_04_08,detailed,I have data that I need to process: annotate peaks with genomic features using hg38 RefSeq annotation
homer,homer_04,homer_04_09,informal,"Hey, can you help me annotate peaks with genomic features using hg38 RefSeq annotation?"
homer,homer_04,homer_04_10,alternative,"With genomic features using hg38 RefSeq annotation, annotate peaks"
homer,homer_05,homer_05_01,original,run de novo and known motif analysis on ChIP-seq peaks
homer,homer_05,homer_05_02,beginner,How do I run de novo and known motif analysis on ChIP-seq peaks?
homer,homer_05,homer_05_03,student,I need to run de novo and known motif analysis on ChIP-seq peaks
homer,homer_05,homer_05_04,polite,Please run de novo and known motif analysis on ChIP-seq peaks
homer,homer_05,homer_05_05,sysadmin,Use homer to run de novo and known motif analysis on ChIP-seq peaks
homer,homer_05,homer_05_06,goal_oriented,I want to run de novo and known motif analysis on ChIP-seq peaks
homer,homer_05,homer_05_07,expert,run de novo known motif analysis on ChIP-seq peaks
homer,homer_05,homer_05_08,detailed,"I have data that I need to process: run de novo and known motif analysis on ChIP-seq peaks, utilizing multiple CPU threads for speed"
homer,homer_05,homer_05_09,informal,"Hey, can you help me run de novo and known motif analysis on ChIP-seq peaks?"
homer,homer_05,homer_05_10,alternative,Known motif analysis on ChIP-seq peaks after run de novo
homer,homer_06,homer_06_01,original,merge peak files from two ChIP-seq replicates
homer,homer_06,homer_06_02,beginner,How do I merge peak files from two ChIP-seq replicates?
homer,homer_06,homer_06_03,student,I need to merge peak files from two ChIP-seq replicates
homer,homer_06,homer_06_04,polite,Please merge peak files from two ChIP-seq replicates
homer,homer_06,homer_06_05,sysadmin,Use homer to merge peak files from two ChIP-seq replicates
homer,homer_06,homer_06_06,goal_oriented,I want to merge peak files from two ChIP-seq replicates
homer,homer_06,homer_06_07,expert,merge peak files two ChIP-seq replicates
homer,homer_06,homer_06_08,detailed,I have data that I need to process: merge peak files from two ChIP-seq replicates
homer,homer_06,homer_06_09,informal,"Hey, can you help me merge peak files from two ChIP-seq replicates?"
homer,homer_06,homer_06_10,alternative,Perform: merge peak files from two ChIP-seq replicates
homer,homer_07,homer_07_01,original,convert HOMER peak file to BED format
homer,homer_07,homer_07_02,beginner,How do I convert HOMER peak file to BED format?
homer,homer_07,homer_07_03,student,I need to convert HOMER peak file to BED format
homer,homer_07,homer_07_04,polite,Please convert HOMER peak file to BED format
homer,homer_07,homer_07_05,sysadmin,Use homer to convert HOMER peak file to BED format
homer,homer_07,homer_07_06,goal_oriented,I want to convert HOMER peak file to BED format
homer,homer_07,homer_07_07,expert,convert HOMER peak file BED format
homer,homer_07,homer_07_08,detailed,I have data that I need to process: convert HOMER peak file to BED format
homer,homer_07,homer_07_09,informal,"Hey, can you help me convert HOMER peak file to BED format?"
homer,homer_07,homer_07_10,alternative,Output BED format by performing: convert HOMER peak file
homer,homer_08,homer_08_01,original,create a HOMER tag directory from a BAM file and write output to a file
homer,homer_08,homer_08_02,beginner,How do I create a HOMER tag directory from a BAM file and write output to a file?
homer,homer_08,homer_08_03,student,I need to create a HOMER tag directory from a BAM file and write output to a file
homer,homer_08,homer_08_04,polite,Please create a HOMER tag directory from a BAM file and write output to a file
homer,homer_08,homer_08_05,sysadmin,Use homer to create a HOMER tag directory from a BAM file and write output to a file
homer,homer_08,homer_08_06,goal_oriented,I want to create a HOMER tag directory from a BAM file and write output to a file
homer,homer_08,homer_08_07,expert,create HOMER tag directory BAM file write output file
homer,homer_08,homer_08_08,detailed,"I have data that I need to process: create a HOMER tag directory from a BAM file and write output to a file, saving the result to a specified output file"
homer,homer_08,homer_08_09,informal,"Hey, can you help me create a HOMER tag directory from a BAM file and write output to a file?"
homer,homer_08,homer_08_10,alternative,Write output to a file after create a HOMER tag directory from a BAM file
homer,homer_09,homer_09_01,original,call narrow transcription factor peaks with an input control in quiet mode
homer,homer_09,homer_09_02,beginner,How do I call narrow transcription factor peaks with an input control in quiet mode?
homer,homer_09,homer_09_03,student,I need to call narrow transcription factor peaks with an input control in quiet mode
homer,homer_09,homer_09_04,polite,Please call narrow transcription factor peaks with an input control in quiet mode
homer,homer_09,homer_09_05,sysadmin,Use homer to call narrow transcription factor peaks with an input control in quiet mode
homer,homer_09,homer_09_06,goal_oriented,I want to call narrow transcription factor peaks with an input control in quiet mode
homer,homer_09,homer_09_07,expert,call narrow transcription factor peaks input control quiet mode
homer,homer_09,homer_09_08,detailed,"I have data that I need to process: call narrow transcription factor peaks with an input control in quiet mode, saving the result to a specified output file"
homer,homer_09,homer_09_09,informal,"Hey, can you help me call narrow transcription factor peaks with an input control in quiet mode?"
homer,homer_09,homer_09_10,alternative,"With an input control in quiet mode, call narrow transcription factor peaks"
homer,homer_10,homer_10_01,original,"call broad histone modification peaks (e.g., H3K27me3) with default parameters"
homer,homer_10,homer_10_02,beginner,"How do I call broad histone modification peaks (e.g., H3K27me3) with default parameters?"
homer,homer_10,homer_10_03,student,"I need to call broad histone modification peaks (e.g., H3K27me3) with default parameters"
homer,homer_10,homer_10_04,polite,"Please call broad histone modification peaks (e.g., H3K27me3) with default parameters"
homer,homer_10,homer_10_05,sysadmin,"Use homer to call broad histone modification peaks (e.g., H3K27me3) with default parameters"
homer,homer_10,homer_10_06,goal_oriented,"I want to call broad histone modification peaks (e.g., H3K27me3) with default parameters"
homer,homer_10,homer_10_07,expert,"call broad histone modification peaks (e.g., H3K27me3) default parameters"
homer,homer_10,homer_10_08,detailed,"I have data that I need to process: call broad histone modification peaks (e.g., H3K27me3) with default parameters, saving the result to a specified output file"
homer,homer_10,homer_10_09,informal,"Hey, can you help me call broad histone modification peaks (e.g., H3K27me3) with default parameters?"
homer,homer_10,homer_10_10,alternative,"With default parameters, call broad histone modification peaks (e.g., H3K27me3)"
igvtools,igvtools_01,igvtools_01_01,original,create coverage TDF track from BAM file
igvtools,igvtools_01,igvtools_01_02,beginner,How do I create coverage TDF track from BAM file?
igvtools,igvtools_01,igvtools_01_03,student,I need to create coverage TDF track from BAM file
igvtools,igvtools_01,igvtools_01_04,polite,Please create coverage TDF track from BAM file
igvtools,igvtools_01,igvtools_01_05,sysadmin,Use igvtools to create coverage TDF track from BAM file
igvtools,igvtools_01,igvtools_01_06,goal_oriented,I want to create coverage TDF track from BAM file
igvtools,igvtools_01,igvtools_01_07,expert,create coverage TDF track BAM file
igvtools,igvtools_01,igvtools_01_08,detailed,I have data that I need to process: create coverage TDF track from BAM file
igvtools,igvtools_01,igvtools_01_09,informal,"Hey, can you help me create coverage TDF track from BAM file?"
igvtools,igvtools_01,igvtools_01_10,alternative,Perform: create coverage TDF track from BAM file
igvtools,igvtools_02,igvtools_02_01,original,index a VCF file for IGV
igvtools,igvtools_02,igvtools_02_02,beginner,How do I index a VCF file for IGV?
igvtools,igvtools_02,igvtools_02_03,student,I need to index a VCF file for IGV
igvtools,igvtools_02,igvtools_02_04,polite,Please index a VCF file for IGV
igvtools,igvtools_02,igvtools_02_05,sysadmin,Use igvtools to index a VCF file for IGV
igvtools,igvtools_02,igvtools_02_06,goal_oriented,I want to index a VCF file for IGV
igvtools,igvtools_02,igvtools_02_07,expert,index VCF file IGV
igvtools,igvtools_02,igvtools_02_08,detailed,I have data that I need to process: index a VCF file for IGV
igvtools,igvtools_02,igvtools_02_09,informal,"Hey, can you help me index a VCF file for IGV?"
igvtools,igvtools_02,igvtools_02_10,alternative,Perform: index a VCF file for IGV
igvtools,igvtools_03,igvtools_03_01,original,sort a BED file for IGV indexing
igvtools,igvtools_03,igvtools_03_02,beginner,How do I sort a BED file for IGV indexing?
igvtools,igvtools_03,igvtools_03_03,student,I need to sort a BED file for IGV indexing
igvtools,igvtools_03,igvtools_03_04,polite,Please sort a BED file for IGV indexing
igvtools,igvtools_03,igvtools_03_05,sysadmin,Use igvtools to sort a BED file for IGV indexing
igvtools,igvtools_03,igvtools_03_06,goal_oriented,I want to sort a BED file for IGV indexing
igvtools,igvtools_03,igvtools_03_07,expert,sort BED file IGV indexing
igvtools,igvtools_03,igvtools_03_08,detailed,I have data that I need to process: sort a BED file for IGV indexing
igvtools,igvtools_03,igvtools_03_09,informal,"Hey, can you help me sort a BED file for IGV indexing?"
igvtools,igvtools_03,igvtools_03_10,alternative,Perform: sort a BED file for IGV indexing
igvtools,igvtools_04,igvtools_04_01,original,create coverage TDF track from BAM file in quiet mode
igvtools,igvtools_04,igvtools_04_02,beginner,How do I create coverage TDF track from BAM file in quiet mode?
igvtools,igvtools_04,igvtools_04_03,student,I need to create coverage TDF track from BAM file in quiet mode
igvtools,igvtools_04,igvtools_04_04,polite,Please create coverage TDF track from BAM file in quiet mode
igvtools,igvtools_04,igvtools_04_05,sysadmin,Use igvtools to create coverage TDF track from BAM file in quiet mode
igvtools,igvtools_04,igvtools_04_06,goal_oriented,I want to create coverage TDF track from BAM file in quiet mode
igvtools,igvtools_04,igvtools_04_07,expert,create coverage TDF track BAM file quiet mode
igvtools,igvtools_04,igvtools_04_08,detailed,I have data that I need to process: create coverage TDF track from BAM file in quiet mode
igvtools,igvtools_04,igvtools_04_09,informal,"Hey, can you help me create coverage TDF track from BAM file in quiet mode?"
igvtools,igvtools_04,igvtools_04_10,alternative,Perform: create coverage TDF track from BAM file in quiet mode
igvtools,igvtools_05,igvtools_05_01,original,index a VCF file for IGV with default parameters
igvtools,igvtools_05,igvtools_05_02,beginner,How do I index a VCF file for IGV with default parameters?
igvtools,igvtools_05,igvtools_05_03,student,I need to index a VCF file for IGV with default parameters
igvtools,igvtools_05,igvtools_05_04,polite,Please index a VCF file for IGV with default parameters
igvtools,igvtools_05,igvtools_05_05,sysadmin,Use igvtools to index a VCF file for IGV with default parameters
igvtools,igvtools_05,igvtools_05_06,goal_oriented,I want to index a VCF file for IGV with default parameters
igvtools,igvtools_05,igvtools_05_07,expert,index VCF file IGV default parameters
igvtools,igvtools_05,igvtools_05_08,detailed,I have data that I need to process: index a VCF file for IGV with default parameters
igvtools,igvtools_05,igvtools_05_09,informal,"Hey, can you help me index a VCF file for IGV with default parameters?"
igvtools,igvtools_05,igvtools_05_10,alternative,"With default parameters, index a VCF file for IGV"
igvtools,igvtools_06,igvtools_06_01,original,sort a BED file for IGV indexing with verbose output
igvtools,igvtools_06,igvtools_06_02,beginner,How do I sort a BED file for IGV indexing with verbose output?
igvtools,igvtools_06,igvtools_06_03,student,I need to sort a BED file for IGV indexing with verbose output
igvtools,igvtools_06,igvtools_06_04,polite,Please sort a BED file for IGV indexing with verbose output
igvtools,igvtools_06,igvtools_06_05,sysadmin,Use igvtools to sort a BED file for IGV indexing with verbose output
igvtools,igvtools_06,igvtools_06_06,goal_oriented,I want to sort a BED file for IGV indexing with verbose output
igvtools,igvtools_06,igvtools_06_07,expert,sort BED file IGV indexing verbose output
igvtools,igvtools_06,igvtools_06_08,detailed,I have data that I need to process: sort a BED file for IGV indexing with verbose output
igvtools,igvtools_06,igvtools_06_09,informal,"Hey, can you help me sort a BED file for IGV indexing with verbose output?"
igvtools,igvtools_06,igvtools_06_10,alternative,"With verbose output, sort a BED file for IGV indexing"
igvtools,igvtools_07,igvtools_07_01,original,create coverage TDF track from BAM file using multiple threads
igvtools,igvtools_07,igvtools_07_02,beginner,How do I create coverage TDF track from BAM file using multiple threads?
igvtools,igvtools_07,igvtools_07_03,student,I need to create coverage TDF track from BAM file using multiple threads
igvtools,igvtools_07,igvtools_07_04,polite,Please create coverage TDF track from BAM file using multiple threads
igvtools,igvtools_07,igvtools_07_05,sysadmin,Use igvtools to create coverage TDF track from BAM file using multiple threads
igvtools,igvtools_07,igvtools_07_06,goal_oriented,I want to create coverage TDF track from BAM file using multiple threads
igvtools,igvtools_07,igvtools_07_07,expert,create coverage TDF track BAM file multiple threads
igvtools,igvtools_07,igvtools_07_08,detailed,"I have data that I need to process: create coverage TDF track from BAM file using multiple threads, utilizing multiple CPU threads for speed"
igvtools,igvtools_07,igvtools_07_09,informal,"Hey, can you help me create coverage TDF track from BAM file using multiple threads?"
igvtools,igvtools_07,igvtools_07_10,alternative,Perform: create coverage TDF track from BAM file using multiple threads
igvtools,igvtools_08,igvtools_08_01,original,index a VCF file for IGV and write output to a file
igvtools,igvtools_08,igvtools_08_02,beginner,How do I index a VCF file for IGV and write output to a file?
igvtools,igvtools_08,igvtools_08_03,student,I need to index a VCF file for IGV and write output to a file
igvtools,igvtools_08,igvtools_08_04,polite,Please index a VCF file for IGV and write output to a file
igvtools,igvtools_08,igvtools_08_05,sysadmin,Use igvtools to index a VCF file for IGV and write output to a file
igvtools,igvtools_08,igvtools_08_06,goal_oriented,I want to index a VCF file for IGV and write output to a file
igvtools,igvtools_08,igvtools_08_07,expert,index VCF file IGV write output file
igvtools,igvtools_08,igvtools_08_08,detailed,"I have data that I need to process: index a VCF file for IGV and write output to a file, saving the result to a specified output file"
igvtools,igvtools_08,igvtools_08_09,informal,"Hey, can you help me index a VCF file for IGV and write output to a file?"
igvtools,igvtools_08,igvtools_08_10,alternative,Write output to a file after index a VCF file for IGV
igvtools,igvtools_09,igvtools_09_01,original,sort a BED file for IGV indexing in quiet mode
igvtools,igvtools_09,igvtools_09_02,beginner,How do I sort a BED file for IGV indexing in quiet mode?
igvtools,igvtools_09,igvtools_09_03,student,I need to sort a BED file for IGV indexing in quiet mode
igvtools,igvtools_09,igvtools_09_04,polite,Please sort a BED file for IGV indexing in quiet mode
igvtools,igvtools_09,igvtools_09_05,sysadmin,Use igvtools to sort a BED file for IGV indexing in quiet mode
igvtools,igvtools_09,igvtools_09_06,goal_oriented,I want to sort a BED file for IGV indexing in quiet mode
igvtools,igvtools_09,igvtools_09_07,expert,sort BED file IGV indexing quiet mode
igvtools,igvtools_09,igvtools_09_08,detailed,I have data that I need to process: sort a BED file for IGV indexing in quiet mode
igvtools,igvtools_09,igvtools_09_09,informal,"Hey, can you help me sort a BED file for IGV indexing in quiet mode?"
igvtools,igvtools_09,igvtools_09_10,alternative,Perform: sort a BED file for IGV indexing in quiet mode
igvtools,igvtools_10,igvtools_10_01,original,create coverage TDF track from BAM file with default parameters
igvtools,igvtools_10,igvtools_10_02,beginner,How do I create coverage TDF track from BAM file with default parameters?
igvtools,igvtools_10,igvtools_10_03,student,I need to create coverage TDF track from BAM file with default parameters
igvtools,igvtools_10,igvtools_10_04,polite,Please create coverage TDF track from BAM file with default parameters
igvtools,igvtools_10,igvtools_10_05,sysadmin,Use igvtools to create coverage TDF track from BAM file with default parameters
igvtools,igvtools_10,igvtools_10_06,goal_oriented,I want to create coverage TDF track from BAM file with default parameters
igvtools,igvtools_10,igvtools_10_07,expert,create coverage TDF track BAM file default parameters
igvtools,igvtools_10,igvtools_10_08,detailed,I have data that I need to process: create coverage TDF track from BAM file with default parameters
igvtools,igvtools_10,igvtools_10_09,informal,"Hey, can you help me create coverage TDF track from BAM file with default parameters?"
igvtools,igvtools_10,igvtools_10_10,alternative,"With default parameters, create coverage TDF track from BAM file"
iqtree2,iqtree2_01,iqtree2_01_01,original,infer maximum-likelihood tree with automatic model selection
iqtree2,iqtree2_01,iqtree2_01_02,beginner,How do I infer maximum-likelihood tree with automatic model selection?
iqtree2,iqtree2_01,iqtree2_01_03,student,I need to infer maximum-likelihood tree with automatic model selection
iqtree2,iqtree2_01,iqtree2_01_04,polite,Please infer maximum-likelihood tree with automatic model selection
iqtree2,iqtree2_01,iqtree2_01_05,sysadmin,Use iqtree2 to infer maximum-likelihood tree with automatic model selection
iqtree2,iqtree2_01,iqtree2_01_06,goal_oriented,I want to infer maximum-likelihood tree with automatic model selection
iqtree2,iqtree2_01,iqtree2_01_07,expert,infer maximum-likelihood tree automatic model selection
iqtree2,iqtree2_01,iqtree2_01_08,detailed,I have data that I need to process: infer maximum-likelihood tree with automatic model selection
iqtree2,iqtree2_01,iqtree2_01_09,informal,"Hey, can you help me infer maximum-likelihood tree with automatic model selection?"
iqtree2,iqtree2_01,iqtree2_01_10,alternative,"With automatic model selection, infer maximum-likelihood tree"
iqtree2,iqtree2_02,iqtree2_02_01,original,infer tree with ultrafast bootstrap and model selection
iqtree2,iqtree2_02,iqtree2_02_02,beginner,How do I infer tree with ultrafast bootstrap and model selection?
iqtree2,iqtree2_02,iqtree2_02_03,student,I need to infer tree with ultrafast bootstrap and model selection
iqtree2,iqtree2_02,iqtree2_02_04,polite,Please infer tree with ultrafast bootstrap and model selection
iqtree2,iqtree2_02,iqtree2_02_05,sysadmin,Use iqtree2 to infer tree with ultrafast bootstrap and model selection
iqtree2,iqtree2_02,iqtree2_02_06,goal_oriented,I want to infer tree with ultrafast bootstrap and model selection
iqtree2,iqtree2_02,iqtree2_02_07,expert,infer tree ultrafast bootstrap model selection
iqtree2,iqtree2_02,iqtree2_02_08,detailed,I have data that I need to process: infer tree with ultrafast bootstrap and model selection
iqtree2,iqtree2_02,iqtree2_02_09,informal,"Hey, can you help me infer tree with ultrafast bootstrap and model selection?"
iqtree2,iqtree2_02,iqtree2_02_10,alternative,Model selection after infer tree with ultrafast bootstrap
iqtree2,iqtree2_03,iqtree2_03_01,original,infer phylogenetic tree for protein sequences
iqtree2,iqtree2_03,iqtree2_03_02,beginner,How do I infer phylogenetic tree for protein sequences?
iqtree2,iqtree2_03,iqtree2_03_03,student,I need to infer phylogenetic tree for protein sequences
iqtree2,iqtree2_03,iqtree2_03_04,polite,Please infer phylogenetic tree for protein sequences
iqtree2,iqtree2_03,iqtree2_03_05,sysadmin,Use iqtree2 to infer phylogenetic tree for protein sequences
iqtree2,iqtree2_03,iqtree2_03_06,goal_oriented,I want to infer phylogenetic tree for protein sequences
iqtree2,iqtree2_03,iqtree2_03_07,expert,infer phylogenetic tree protein sequences
iqtree2,iqtree2_03,iqtree2_03_08,detailed,I have data that I need to process: infer phylogenetic tree for protein sequences
iqtree2,iqtree2_03,iqtree2_03_09,informal,"Hey, can you help me infer phylogenetic tree for protein sequences?"
iqtree2,iqtree2_03,iqtree2_03_10,alternative,Perform: infer phylogenetic tree for protein sequences
iqtree2,iqtree2_04,iqtree2_04_01,original,infer concordance factor analysis for assessing gene tree discordance
iqtree2,iqtree2_04,iqtree2_04_02,beginner,How do I infer concordance factor analysis for assessing gene tree discordance?
iqtree2,iqtree2_04,iqtree2_04_03,student,I need to infer concordance factor analysis for assessing gene tree discordance
iqtree2,iqtree2_04,iqtree2_04_04,polite,Please infer concordance factor analysis for assessing gene tree discordance
iqtree2,iqtree2_04,iqtree2_04_05,sysadmin,Use iqtree2 to infer concordance factor analysis for assessing gene tree discordance
iqtree2,iqtree2_04,iqtree2_04_06,goal_oriented,I want to infer concordance factor analysis for assessing gene tree discordance
iqtree2,iqtree2_04,iqtree2_04_07,expert,infer concordance factor analysis assessing gene tree discordance
iqtree2,iqtree2_04,iqtree2_04_08,detailed,I have data that I need to process: infer concordance factor analysis for assessing gene tree discordance
iqtree2,iqtree2_04,iqtree2_04_09,informal,"Hey, can you help me infer concordance factor analysis for assessing gene tree discordance?"
iqtree2,iqtree2_04,iqtree2_04_10,alternative,Perform: infer concordance factor analysis for assessing gene tree discordance
iqtree2,iqtree2_05,iqtree2_05_01,original,infer tree with standard bootstrap and specified outgroup
iqtree2,iqtree2_05,iqtree2_05_02,beginner,How do I infer tree with standard bootstrap and specified outgroup?
iqtree2,iqtree2_05,iqtree2_05_03,student,I need to infer tree with standard bootstrap and specified outgroup
iqtree2,iqtree2_05,iqtree2_05_04,polite,Please infer tree with standard bootstrap and specified outgroup
iqtree2,iqtree2_05,iqtree2_05_05,sysadmin,Use iqtree2 to infer tree with standard bootstrap and specified outgroup
iqtree2,iqtree2_05,iqtree2_05_06,goal_oriented,I want to infer tree with standard bootstrap and specified outgroup
iqtree2,iqtree2_05,iqtree2_05_07,expert,infer tree standard bootstrap specified outgroup
iqtree2,iqtree2_05,iqtree2_05_08,detailed,"I have data that I need to process: infer tree with standard bootstrap and specified outgroup, saving the result to a specified output file"
iqtree2,iqtree2_05,iqtree2_05_09,informal,"Hey, can you help me infer tree with standard bootstrap and specified outgroup?"
iqtree2,iqtree2_05,iqtree2_05_10,alternative,Specified outgroup after infer tree with standard bootstrap
iqtree2,iqtree2_06,iqtree2_06_01,original,infer maximum-likelihood tree with automatic model selection with verbose output
iqtree2,iqtree2_06,iqtree2_06_02,beginner,How do I infer maximum-likelihood tree with automatic model selection with verbose output?
iqtree2,iqtree2_06,iqtree2_06_03,student,I need to infer maximum-likelihood tree with automatic model selection with verbose output
iqtree2,iqtree2_06,iqtree2_06_04,polite,Please infer maximum-likelihood tree with automatic model selection with verbose output
iqtree2,iqtree2_06,iqtree2_06_05,sysadmin,Use iqtree2 to infer maximum-likelihood tree with automatic model selection with verbose output
iqtree2,iqtree2_06,iqtree2_06_06,goal_oriented,I want to infer maximum-likelihood tree with automatic model selection with verbose output
iqtree2,iqtree2_06,iqtree2_06_07,expert,infer maximum-likelihood tree automatic model selection verbose output
iqtree2,iqtree2_06,iqtree2_06_08,detailed,I have data that I need to process: infer maximum-likelihood tree with automatic model selection with verbose output
iqtree2,iqtree2_06,iqtree2_06_09,informal,"Hey, can you help me infer maximum-likelihood tree with automatic model selection with verbose output?"
iqtree2,iqtree2_06,iqtree2_06_10,alternative,"With automatic model selection with verbose output, infer maximum-likelihood tree"
iqtree2,iqtree2_07,iqtree2_07_01,original,infer tree with ultrafast bootstrap and model selection using multiple threads
iqtree2,iqtree2_07,iqtree2_07_02,beginner,How do I infer tree with ultrafast bootstrap and model selection using multiple threads?
iqtree2,iqtree2_07,iqtree2_07_03,student,I need to infer tree with ultrafast bootstrap and model selection using multiple threads
iqtree2,iqtree2_07,iqtree2_07_04,polite,Please infer tree with ultrafast bootstrap and model selection using multiple threads
iqtree2,iqtree2_07,iqtree2_07_05,sysadmin,Use iqtree2 to infer tree with ultrafast bootstrap and model selection using multiple threads
iqtree2,iqtree2_07,iqtree2_07_06,goal_oriented,I want to infer tree with ultrafast bootstrap and model selection using multiple threads
iqtree2,iqtree2_07,iqtree2_07_07,expert,infer tree ultrafast bootstrap model selection multiple threads
iqtree2,iqtree2_07,iqtree2_07_08,detailed,"I have data that I need to process: infer tree with ultrafast bootstrap and model selection using multiple threads, utilizing multiple CPU threads for speed"
iqtree2,iqtree2_07,iqtree2_07_09,informal,"Hey, can you help me infer tree with ultrafast bootstrap and model selection using multiple threads?"
iqtree2,iqtree2_07,iqtree2_07_10,alternative,Model selection using multiple threads after infer tree with ultrafast bootstrap
iqtree2,iqtree2_08,iqtree2_08_01,original,infer phylogenetic tree for protein sequences and write output to a file
iqtree2,iqtree2_08,iqtree2_08_02,beginner,How do I infer phylogenetic tree for protein sequences and write output to a file?
iqtree2,iqtree2_08,iqtree2_08_03,student,I need to infer phylogenetic tree for protein sequences and write output to a file
iqtree2,iqtree2_08,iqtree2_08_04,polite,Please infer phylogenetic tree for protein sequences and write output to a file
iqtree2,iqtree2_08,iqtree2_08_05,sysadmin,Use iqtree2 to infer phylogenetic tree for protein sequences and write output to a file
iqtree2,iqtree2_08,iqtree2_08_06,goal_oriented,I want to infer phylogenetic tree for protein sequences and write output to a file
iqtree2,iqtree2_08,iqtree2_08_07,expert,infer phylogenetic tree protein sequences write output file
iqtree2,iqtree2_08,iqtree2_08_08,detailed,"I have data that I need to process: infer phylogenetic tree for protein sequences and write output to a file, saving the result to a specified output file"
iqtree2,iqtree2_08,iqtree2_08_09,informal,"Hey, can you help me infer phylogenetic tree for protein sequences and write output to a file?"
iqtree2,iqtree2_08,iqtree2_08_10,alternative,Write output to a file after infer phylogenetic tree for protein sequences
iqtree2,iqtree2_09,iqtree2_09_01,original,infer concordance factor analysis for assessing gene tree discordance in quiet mode
iqtree2,iqtree2_09,iqtree2_09_02,beginner,How do I infer concordance factor analysis for assessing gene tree discordance in quiet mode?
iqtree2,iqtree2_09,iqtree2_09_03,student,I need to infer concordance factor analysis for assessing gene tree discordance in quiet mode
iqtree2,iqtree2_09,iqtree2_09_04,polite,Please infer concordance factor analysis for assessing gene tree discordance in quiet mode
iqtree2,iqtree2_09,iqtree2_09_05,sysadmin,Use iqtree2 to infer concordance factor analysis for assessing gene tree discordance in quiet mode
iqtree2,iqtree2_09,iqtree2_09_06,goal_oriented,I want to infer concordance factor analysis for assessing gene tree discordance in quiet mode
iqtree2,iqtree2_09,iqtree2_09_07,expert,infer concordance factor analysis assessing gene tree discordance quiet mode
iqtree2,iqtree2_09,iqtree2_09_08,detailed,I have data that I need to process: infer concordance factor analysis for assessing gene tree discordance in quiet mode
iqtree2,iqtree2_09,iqtree2_09_09,informal,"Hey, can you help me infer concordance factor analysis for assessing gene tree discordance in quiet mode?"
iqtree2,iqtree2_09,iqtree2_09_10,alternative,Perform: infer concordance factor analysis for assessing gene tree discordance in quiet mode
iqtree2,iqtree2_10,iqtree2_10_01,original,infer tree with standard bootstrap and specified outgroup with default parameters
iqtree2,iqtree2_10,iqtree2_10_02,beginner,How do I infer tree with standard bootstrap and specified outgroup with default parameters?
iqtree2,iqtree2_10,iqtree2_10_03,student,I need to infer tree with standard bootstrap and specified outgroup with default parameters
iqtree2,iqtree2_10,iqtree2_10_04,polite,Please infer tree with standard bootstrap and specified outgroup with default parameters
iqtree2,iqtree2_10,iqtree2_10_05,sysadmin,Use iqtree2 to infer tree with standard bootstrap and specified outgroup with default parameters
iqtree2,iqtree2_10,iqtree2_10_06,goal_oriented,I want to infer tree with standard bootstrap and specified outgroup with default parameters
iqtree2,iqtree2_10,iqtree2_10_07,expert,infer tree standard bootstrap specified outgroup default parameters
iqtree2,iqtree2_10,iqtree2_10_08,detailed,"I have data that I need to process: infer tree with standard bootstrap and specified outgroup with default parameters, saving the result to a specified output file"
iqtree2,iqtree2_10,iqtree2_10_09,informal,"Hey, can you help me infer tree with standard bootstrap and specified outgroup with default parameters?"
iqtree2,iqtree2_10,iqtree2_10_10,alternative,Specified outgroup with default parameters after infer tree with standard bootstrap
java,java_01,java_01_01,original,check installed Java version
java,java_01,java_01_02,beginner,How do I check installed Java version?
java,java_01,java_01_03,student,I need to check installed Java version
java,java_01,java_01_04,polite,Please check installed Java version
java,java_01,java_01_05,sysadmin,Use java to check installed Java version
java,java_01,java_01_06,goal_oriented,I want to check installed Java version
java,java_01,java_01_07,expert,check installed Java version
java,java_01,java_01_08,detailed,I have data that I need to process: check installed Java version
java,java_01,java_01_09,informal,"Hey, can you help me check installed Java version?"
java,java_01,java_01_10,alternative,Perform: check installed Java version
java,java_02,java_02_01,original,run a JAR-based tool with increased heap memory
java,java_02,java_02_02,beginner,How do I run a JAR-based tool with increased heap memory?
java,java_02,java_02_03,student,I need to run a JAR-based tool with increased heap memory
java,java_02,java_02_04,polite,Please run a JAR-based tool with increased heap memory
java,java_02,java_02_05,sysadmin,Use java to run a JAR-based tool with increased heap memory
java,java_02,java_02_06,goal_oriented,I want to run a JAR-based tool with increased heap memory
java,java_02,java_02_07,expert,run JAR-based tool increased heap memory
java,java_02,java_02_08,detailed,I have data that I need to process: run a JAR-based tool with increased heap memory
java,java_02,java_02_09,informal,"Hey, can you help me run a JAR-based tool with increased heap memory?"
java,java_02,java_02_10,alternative,"With increased heap memory, run a JAR-based tool"
java,java_03,java_03_01,original,run GATK with custom tmp directory and GC settings
java,java_03,java_03_02,beginner,How do I run GATK with custom tmp directory and GC settings?
java,java_03,java_03_03,student,I need to run GATK with custom tmp directory and GC settings
java,java_03,java_03_04,polite,Please run GATK with custom tmp directory and GC settings
java,java_03,java_03_05,sysadmin,Use java to run GATK with custom tmp directory and GC settings
java,java_03,java_03_06,goal_oriented,I want to run GATK with custom tmp directory and GC settings
java,java_03,java_03_07,expert,run GATK custom tmp directory GC settings
java,java_03,java_03_08,detailed,I have data that I need to process: run GATK with custom tmp directory and GC settings
java,java_03,java_03_09,informal,"Hey, can you help me run GATK with custom tmp directory and GC settings?"
java,java_03,java_03_10,alternative,GC settings after run GATK with custom tmp directory
java,java_04,java_04_01,original,run FastQC via its JAR directly
java,java_04,java_04_02,beginner,How do I run FastQC via its JAR directly?
java,java_04,java_04_03,student,I need to run FastQC via its JAR directly
java,java_04,java_04_04,polite,Please run FastQC via its JAR directly
java,java_04,java_04_05,sysadmin,Use java to run FastQC via its JAR directly
java,java_04,java_04_06,goal_oriented,I want to run FastQC via its JAR directly
java,java_04,java_04_07,expert,run FastQC via its JAR directly
java,java_04,java_04_08,detailed,"I have data that I need to process: run FastQC via its JAR directly, utilizing multiple CPU threads for speed"
java,java_04,java_04_09,informal,"Hey, can you help me run FastQC via its JAR directly?"
java,java_04,java_04_10,alternative,Perform: run FastQC via its JAR directly
java,java_05,java_05_01,original,show all system properties and JVM settings
java,java_05,java_05_02,beginner,How do I show all system properties and JVM settings?
java,java_05,java_05_03,student,I need to show all system properties and JVM settings
java,java_05,java_05_04,polite,Please show all system properties and JVM settings
java,java_05,java_05_05,sysadmin,Use java to show all system properties and JVM settings
java,java_05,java_05_06,goal_oriented,I want to show all system properties and JVM settings
java,java_05,java_05_07,expert,show all system properties JVM settings
java,java_05,java_05_08,detailed,I have data that I need to process: show all system properties and JVM settings
java,java_05,java_05_09,informal,"Hey, can you help me show all system properties and JVM settings?"
java,java_05,java_05_10,alternative,JVM settings after show all system properties
java,java_06,java_06_01,original,list available JVM garbage collectors and tuning flags
java,java_06,java_06_02,beginner,How do I list available JVM garbage collectors and tuning flags?
java,java_06,java_06_03,student,I need to list available JVM garbage collectors and tuning flags
java,java_06,java_06_04,polite,Please list available JVM garbage collectors and tuning flags
java,java_06,java_06_05,sysadmin,Use java to list available JVM garbage collectors and tuning flags
java,java_06,java_06_06,goal_oriented,I want to list available JVM garbage collectors and tuning flags
java,java_06,java_06_07,expert,list available JVM garbage collectors tuning flags
java,java_06,java_06_08,detailed,I have data that I need to process: list available JVM garbage collectors and tuning flags
java,java_06,java_06_09,informal,"Hey, can you help me list available JVM garbage collectors and tuning flags?"
java,java_06,java_06_10,alternative,Tuning flags after list available JVM garbage collectors
java,java_07,java_07_01,original,run Trimmomatic via its JAR
java,java_07,java_07_02,beginner,How do I run Trimmomatic via its JAR?
java,java_07,java_07_03,student,I need to run Trimmomatic via its JAR
java,java_07,java_07_04,polite,Please run Trimmomatic via its JAR
java,java_07,java_07_05,sysadmin,Use java to run Trimmomatic via its JAR
java,java_07,java_07_06,goal_oriented,I want to run Trimmomatic via its JAR
java,java_07,java_07_07,expert,run Trimmomatic via its JAR
java,java_07,java_07_08,detailed,I have data that I need to process: run Trimmomatic via its JAR
java,java_07,java_07_09,informal,"Hey, can you help me run Trimmomatic via its JAR?"
java,java_07,java_07_10,alternative,Perform: run Trimmomatic via its JAR
java,java_08,java_08_01,original,check available JVM memory settings
java,java_08,java_08_02,beginner,How do I check available JVM memory settings?
java,java_08,java_08_03,student,I need to check available JVM memory settings
java,java_08,java_08_04,polite,Please check available JVM memory settings
java,java_08,java_08_05,sysadmin,Use java to check available JVM memory settings
java,java_08,java_08_06,goal_oriented,I want to check available JVM memory settings
java,java_08,java_08_07,expert,check available JVM memory settings
java,java_08,java_08_08,detailed,I have data that I need to process: check available JVM memory settings
java,java_08,java_08_09,informal,"Hey, can you help me check available JVM memory settings?"
java,java_08,java_08_10,alternative,Perform: check available JVM memory settings
java,java_09,java_09_01,original,run a JAR with a custom classpath
java,java_09,java_09_02,beginner,How do I run a JAR with a custom classpath?
java,java_09,java_09_03,student,I need to run a JAR with a custom classpath
java,java_09,java_09_04,polite,Please run a JAR with a custom classpath
java,java_09,java_09_05,sysadmin,Use java to run a JAR with a custom classpath
java,java_09,java_09_06,goal_oriented,I want to run a JAR with a custom classpath
java,java_09,java_09_07,expert,run JAR custom classpath
java,java_09,java_09_08,detailed,I have data that I need to process: run a JAR with a custom classpath
java,java_09,java_09_09,informal,"Hey, can you help me run a JAR with a custom classpath?"
java,java_09,java_09_10,alternative,"With a custom classpath, run a JAR"
java,java_10,java_10_01,original,check installed Java version with default parameters
java,java_10,java_10_02,beginner,How do I check installed Java version with default parameters?
java,java_10,java_10_03,student,I need to check installed Java version with default parameters
java,java_10,java_10_04,polite,Please check installed Java version with default parameters
java,java_10,java_10_05,sysadmin,Use java to check installed Java version with default parameters
java,java_10,java_10_06,goal_oriented,I want to check installed Java version with default parameters
java,java_10,java_10_07,expert,check installed Java version default parameters
java,java_10,java_10_08,detailed,I have data that I need to process: check installed Java version with default parameters
java,java_10,java_10_09,informal,"Hey, can you help me check installed Java version with default parameters?"
java,java_10,java_10_10,alternative,"With default parameters, check installed Java version"
julia,julia_01,julia_01_01,original,run a Julia script
julia,julia_01,julia_01_02,beginner,How do I run a Julia script?
julia,julia_01,julia_01_03,student,I need to run a Julia script
julia,julia_01,julia_01_04,polite,Please run a Julia script
julia,julia_01,julia_01_05,sysadmin,Use julia to run a Julia script
julia,julia_01,julia_01_06,goal_oriented,I want to run a Julia script
julia,julia_01,julia_01_07,expert,run Julia script
julia,julia_01,julia_01_08,detailed,I have data that I need to process: run a Julia script
julia,julia_01,julia_01_09,informal,"Hey, can you help me run a Julia script?"
julia,julia_01,julia_01_10,alternative,Perform: run a Julia script
julia,julia_02,julia_02_01,original,run a script in a specific project environment
julia,julia_02,julia_02_02,beginner,How do I run a script in a specific project environment?
julia,julia_02,julia_02_03,student,I need to run a script in a specific project environment
julia,julia_02,julia_02_04,polite,Please run a script in a specific project environment
julia,julia_02,julia_02_05,sysadmin,Use julia to run a script in a specific project environment
julia,julia_02,julia_02_06,goal_oriented,I want to run a script in a specific project environment
julia,julia_02,julia_02_07,expert,run script specific project environment
julia,julia_02,julia_02_08,detailed,I have data that I need to process: run a script in a specific project environment
julia,julia_02,julia_02_09,informal,"Hey, can you help me run a script in a specific project environment?"
julia,julia_02,julia_02_10,alternative,Perform: run a script in a specific project environment
julia,julia_03,julia_03_01,original,run a script with multiple threads
julia,julia_03,julia_03_02,beginner,How do I run a script with multiple threads?
julia,julia_03,julia_03_03,student,I need to run a script with multiple threads
julia,julia_03,julia_03_04,polite,Please run a script with multiple threads
julia,julia_03,julia_03_05,sysadmin,Use julia to run a script with multiple threads
julia,julia_03,julia_03_06,goal_oriented,I want to run a script with multiple threads
julia,julia_03,julia_03_07,expert,run script multiple threads
julia,julia_03,julia_03_08,detailed,"I have data that I need to process: run a script with multiple threads, utilizing multiple CPU threads for speed"
julia,julia_03,julia_03_09,informal,"Hey, can you help me run a script with multiple threads?"
julia,julia_03,julia_03_10,alternative,"With multiple threads, run a script"
julia,julia_04,julia_04_01,original,install a package from the Julia REPL (batch mode)
julia,julia_04,julia_04_02,beginner,How do I install a package from the Julia REPL (batch mode)?
julia,julia_04,julia_04_03,student,I need to install a package from the Julia REPL (batch mode)
julia,julia_04,julia_04_04,polite,Please install a package from the Julia REPL (batch mode)
julia,julia_04,julia_04_05,sysadmin,Use julia to install a package from the Julia REPL (batch mode)
julia,julia_04,julia_04_06,goal_oriented,I want to install a package from the Julia REPL (batch mode)
julia,julia_04,julia_04_07,expert,install package Julia REPL (batch mode)
julia,julia_04,julia_04_08,detailed,I have data that I need to process: install a package from the Julia REPL (batch mode)
julia,julia_04,julia_04_09,informal,"Hey, can you help me install a package from the Julia REPL (batch mode)?"
julia,julia_04,julia_04_10,alternative,Perform: install a package from the Julia REPL (batch mode)
julia,julia_05,julia_05_01,original,show installed packages in the current environment
julia,julia_05,julia_05_02,beginner,How do I show installed packages in the current environment?
julia,julia_05,julia_05_03,student,I need to show installed packages in the current environment
julia,julia_05,julia_05_04,polite,Please show installed packages in the current environment
julia,julia_05,julia_05_05,sysadmin,Use julia to show installed packages in the current environment
julia,julia_05,julia_05_06,goal_oriented,I want to show installed packages in the current environment
julia,julia_05,julia_05_07,expert,show installed packages current environment
julia,julia_05,julia_05_08,detailed,I have data that I need to process: show installed packages in the current environment
julia,julia_05,julia_05_09,informal,"Hey, can you help me show installed packages in the current environment?"
julia,julia_05,julia_05_10,alternative,Perform: show installed packages in the current environment
julia,julia_06,julia_06_01,original,add BioJulia packages for bioinformatics
julia,julia_06,julia_06_02,beginner,How do I add BioJulia packages for bioinformatics?
julia,julia_06,julia_06_03,student,I need to add BioJulia packages for bioinformatics
julia,julia_06,julia_06_04,polite,Please add BioJulia packages for bioinformatics
julia,julia_06,julia_06_05,sysadmin,Use julia to add BioJulia packages for bioinformatics
julia,julia_06,julia_06_06,goal_oriented,I want to add BioJulia packages for bioinformatics
julia,julia_06,julia_06_07,expert,add BioJulia packages bioinformatics
julia,julia_06,julia_06_08,detailed,I have data that I need to process: add BioJulia packages for bioinformatics
julia,julia_06,julia_06_09,informal,"Hey, can you help me add BioJulia packages for bioinformatics?"
julia,julia_06,julia_06_10,alternative,Perform: add BioJulia packages for bioinformatics
julia,julia_07,julia_07_01,original,run script without loading startup.jl (for CI/pipelines)
julia,julia_07,julia_07_02,beginner,How do I run script without loading startup.jl (for CI/pipelines)?
julia,julia_07,julia_07_03,student,I need to run script without loading startup.jl (for CI/pipelines)
julia,julia_07,julia_07_04,polite,Please run script without loading startup.jl (for CI/pipelines)
julia,julia_07,julia_07_05,sysadmin,Use julia to run script without loading startup.jl (for CI/pipelines)
julia,julia_07,julia_07_06,goal_oriented,I want to run script without loading startup.jl (for CI/pipelines)
julia,julia_07,julia_07_07,expert,run script without loading startup.jl (for CI/pipelines)
julia,julia_07,julia_07_08,detailed,I have data that I need to process: run script without loading startup.jl (for CI/pipelines)
julia,julia_07,julia_07_09,informal,"Hey, can you help me run script without loading startup.jl (for CI/pipelines)?"
julia,julia_07,julia_07_10,alternative,Perform: run script without loading startup.jl (for CI/pipelines)
julia,julia_08,julia_08_01,original,check Julia version and depot paths
julia,julia_08,julia_08_02,beginner,How do I check Julia version and depot paths?
julia,julia_08,julia_08_03,student,I need to check Julia version and depot paths
julia,julia_08,julia_08_04,polite,Please check Julia version and depot paths
julia,julia_08,julia_08_05,sysadmin,Use julia to check Julia version and depot paths
julia,julia_08,julia_08_06,goal_oriented,I want to check Julia version and depot paths
julia,julia_08,julia_08_07,expert,check Julia version depot paths
julia,julia_08,julia_08_08,detailed,I have data that I need to process: check Julia version and depot paths
julia,julia_08,julia_08_09,informal,"Hey, can you help me check Julia version and depot paths?"
julia,julia_08,julia_08_10,alternative,Depot paths after check Julia version
julia,julia_09,julia_09_01,original,compile a script ahead of time to reduce startup latency
julia,julia_09,julia_09_02,beginner,How do I compile a script ahead of time to reduce startup latency?
julia,julia_09,julia_09_03,student,I need to compile a script ahead of time to reduce startup latency
julia,julia_09,julia_09_04,polite,Please compile a script ahead of time to reduce startup latency
julia,julia_09,julia_09_05,sysadmin,Use julia to compile a script ahead of time to reduce startup latency
julia,julia_09,julia_09_06,goal_oriented,I want to compile a script ahead of time to reduce startup latency
julia,julia_09,julia_09_07,expert,compile script ahead of time reduce startup latency
julia,julia_09,julia_09_08,detailed,I have data that I need to process: compile a script ahead of time to reduce startup latency
julia,julia_09,julia_09_09,informal,"Hey, can you help me compile a script ahead of time to reduce startup latency?"
julia,julia_09,julia_09_10,alternative,Output reduce startup latency by performing: compile a script ahead of time
julia,julia_10,julia_10_01,original,run a Pluto notebook server on a specific port
julia,julia_10,julia_10_02,beginner,How do I run a Pluto notebook server on a specific port?
julia,julia_10,julia_10_03,student,I need to run a Pluto notebook server on a specific port
julia,julia_10,julia_10_04,polite,Please run a Pluto notebook server on a specific port
julia,julia_10,julia_10_05,sysadmin,Use julia to run a Pluto notebook server on a specific port
julia,julia_10,julia_10_06,goal_oriented,I want to run a Pluto notebook server on a specific port
julia,julia_10,julia_10_07,expert,run Pluto notebook server on specific port
julia,julia_10,julia_10_08,detailed,I have data that I need to process: run a Pluto notebook server on a specific port
julia,julia_10,julia_10_09,informal,"Hey, can you help me run a Pluto notebook server on a specific port?"
julia,julia_10,julia_10_10,alternative,Perform: run a Pluto notebook server on a specific port
kallisto,kallisto_01,kallisto_01_01,original,build a kallisto index from a transcriptome FASTA
kallisto,kallisto_01,kallisto_01_02,beginner,How do I build a kallisto index from a transcriptome FASTA?
kallisto,kallisto_01,kallisto_01_03,student,I need to build a kallisto index from a transcriptome FASTA
kallisto,kallisto_01,kallisto_01_04,polite,Please build a kallisto index from a transcriptome FASTA
kallisto,kallisto_01,kallisto_01_05,sysadmin,Use kallisto to build a kallisto index from a transcriptome FASTA
kallisto,kallisto_01,kallisto_01_06,goal_oriented,I want to build a kallisto index from a transcriptome FASTA
kallisto,kallisto_01,kallisto_01_07,expert,build kallisto index transcriptome FASTA
kallisto,kallisto_01,kallisto_01_08,detailed,I have data that I need to process: build a kallisto index from a transcriptome FASTA
kallisto,kallisto_01,kallisto_01_09,informal,"Hey, can you help me build a kallisto index from a transcriptome FASTA?"
kallisto,kallisto_01,kallisto_01_10,alternative,Perform: build a kallisto index from a transcriptome FASTA
kallisto,kallisto_02,kallisto_02_01,original,quantify paired-end RNA-seq reads
kallisto,kallisto_02,kallisto_02_02,beginner,How do I quantify paired-end RNA-seq reads?
kallisto,kallisto_02,kallisto_02_03,student,I need to quantify paired-end RNA-seq reads
kallisto,kallisto_02,kallisto_02_04,polite,Please quantify paired-end RNA-seq reads
kallisto,kallisto_02,kallisto_02_05,sysadmin,Use kallisto to quantify paired-end RNA-seq reads
kallisto,kallisto_02,kallisto_02_06,goal_oriented,I want to quantify paired-end RNA-seq reads
kallisto,kallisto_02,kallisto_02_07,expert,quantify paired-end RNA-seq reads
kallisto,kallisto_02,kallisto_02_08,detailed,"I have data that I need to process: quantify paired-end RNA-seq reads, utilizing multiple CPU threads for speed, saving the result to a specified output file"
kallisto,kallisto_02,kallisto_02_09,informal,"Hey, can you help me quantify paired-end RNA-seq reads?"
kallisto,kallisto_02,kallisto_02_10,alternative,Perform: quantify paired-end RNA-seq reads
kallisto,kallisto_03,kallisto_03_01,original,quantify single-end RNA-seq reads with fragment length parameters
kallisto,kallisto_03,kallisto_03_02,beginner,How do I quantify single-end RNA-seq reads with fragment length parameters?
kallisto,kallisto_03,kallisto_03_03,student,I need to quantify single-end RNA-seq reads with fragment length parameters
kallisto,kallisto_03,kallisto_03_04,polite,Please quantify single-end RNA-seq reads with fragment length parameters
kallisto,kallisto_03,kallisto_03_05,sysadmin,Use kallisto to quantify single-end RNA-seq reads with fragment length parameters
kallisto,kallisto_03,kallisto_03_06,goal_oriented,I want to quantify single-end RNA-seq reads with fragment length parameters
kallisto,kallisto_03,kallisto_03_07,expert,quantify single-end RNA-seq reads fragment length parameters
kallisto,kallisto_03,kallisto_03_08,detailed,"I have data that I need to process: quantify single-end RNA-seq reads with fragment length parameters, utilizing multiple CPU threads for speed, saving the result to a specified output file"
kallisto,kallisto_03,kallisto_03_09,informal,"Hey, can you help me quantify single-end RNA-seq reads with fragment length parameters?"
kallisto,kallisto_03,kallisto_03_10,alternative,"With fragment length parameters, quantify single-end RNA-seq reads"
kallisto,kallisto_04,kallisto_04_01,original,quantify strand-specific reverse-strand paired-end RNA-seq
kallisto,kallisto_04,kallisto_04_02,beginner,How do I quantify strand-specific reverse-strand paired-end RNA-seq?
kallisto,kallisto_04,kallisto_04_03,student,I need to quantify strand-specific reverse-strand paired-end RNA-seq
kallisto,kallisto_04,kallisto_04_04,polite,Please quantify strand-specific reverse-strand paired-end RNA-seq
kallisto,kallisto_04,kallisto_04_05,sysadmin,Use kallisto to quantify strand-specific reverse-strand paired-end RNA-seq
kallisto,kallisto_04,kallisto_04_06,goal_oriented,I want to quantify strand-specific reverse-strand paired-end RNA-seq
kallisto,kallisto_04,kallisto_04_07,expert,quantify strand-specific reverse-strand paired-end RNA-seq
kallisto,kallisto_04,kallisto_04_08,detailed,"I have data that I need to process: quantify strand-specific reverse-strand paired-end RNA-seq, utilizing multiple CPU threads for speed, saving the result to a specified output file"
kallisto,kallisto_04,kallisto_04_09,informal,"Hey, can you help me quantify strand-specific reverse-strand paired-end RNA-seq?"
kallisto,kallisto_04,kallisto_04_10,alternative,Perform: quantify strand-specific reverse-strand paired-end RNA-seq
kallisto,kallisto_05,kallisto_05_01,original,quantify multiple samples in batch
kallisto,kallisto_05,kallisto_05_02,beginner,How do I quantify multiple samples in batch?
kallisto,kallisto_05,kallisto_05_03,student,I need to quantify multiple samples in batch
kallisto,kallisto_05,kallisto_05_04,polite,Please quantify multiple samples in batch
kallisto,kallisto_05,kallisto_05_05,sysadmin,Use kallisto to quantify multiple samples in batch
kallisto,kallisto_05,kallisto_05_06,goal_oriented,I want to quantify multiple samples in batch
kallisto,kallisto_05,kallisto_05_07,expert,quantify multiple samples batch
kallisto,kallisto_05,kallisto_05_08,detailed,"I have data that I need to process: quantify multiple samples in batch, utilizing multiple CPU threads for speed, saving the result to a specified output file"
kallisto,kallisto_05,kallisto_05_09,informal,"Hey, can you help me quantify multiple samples in batch?"
kallisto,kallisto_05,kallisto_05_10,alternative,Perform: quantify multiple samples in batch
kallisto,kallisto_06,kallisto_06_01,original,build a kallisto index from a transcriptome FASTA with verbose output
kallisto,kallisto_06,kallisto_06_02,beginner,How do I build a kallisto index from a transcriptome FASTA with verbose output?
kallisto,kallisto_06,kallisto_06_03,student,I need to build a kallisto index from a transcriptome FASTA with verbose output
kallisto,kallisto_06,kallisto_06_04,polite,Please build a kallisto index from a transcriptome FASTA with verbose output
kallisto,kallisto_06,kallisto_06_05,sysadmin,Use kallisto to build a kallisto index from a transcriptome FASTA with verbose output
kallisto,kallisto_06,kallisto_06_06,goal_oriented,I want to build a kallisto index from a transcriptome FASTA with verbose output
kallisto,kallisto_06,kallisto_06_07,expert,build kallisto index transcriptome FASTA verbose output
kallisto,kallisto_06,kallisto_06_08,detailed,I have data that I need to process: build a kallisto index from a transcriptome FASTA with verbose output
kallisto,kallisto_06,kallisto_06_09,informal,"Hey, can you help me build a kallisto index from a transcriptome FASTA with verbose output?"
kallisto,kallisto_06,kallisto_06_10,alternative,"With verbose output, build a kallisto index from a transcriptome FASTA"
kallisto,kallisto_07,kallisto_07_01,original,quantify paired-end RNA-seq reads using multiple threads
kallisto,kallisto_07,kallisto_07_02,beginner,How do I quantify paired-end RNA-seq reads using multiple threads?
kallisto,kallisto_07,kallisto_07_03,student,I need to quantify paired-end RNA-seq reads using multiple threads
kallisto,kallisto_07,kallisto_07_04,polite,Please quantify paired-end RNA-seq reads using multiple threads
kallisto,kallisto_07,kallisto_07_05,sysadmin,Use kallisto to quantify paired-end RNA-seq reads using multiple threads
kallisto,kallisto_07,kallisto_07_06,goal_oriented,I want to quantify paired-end RNA-seq reads using multiple threads
kallisto,kallisto_07,kallisto_07_07,expert,quantify paired-end RNA-seq reads multiple threads
kallisto,kallisto_07,kallisto_07_08,detailed,"I have data that I need to process: quantify paired-end RNA-seq reads using multiple threads, utilizing multiple CPU threads for speed, saving the result to a specified output file"
kallisto,kallisto_07,kallisto_07_09,informal,"Hey, can you help me quantify paired-end RNA-seq reads using multiple threads?"
kallisto,kallisto_07,kallisto_07_10,alternative,Perform: quantify paired-end RNA-seq reads using multiple threads
kallisto,kallisto_08,kallisto_08_01,original,quantify single-end RNA-seq reads with fragment length parameters and write output to a file
kallisto,kallisto_08,kallisto_08_02,beginner,How do I quantify single-end RNA-seq reads with fragment length parameters and write output to a file?
kallisto,kallisto_08,kallisto_08_03,student,I need to quantify single-end RNA-seq reads with fragment length parameters and write output to a file
kallisto,kallisto_08,kallisto_08_04,polite,Please quantify single-end RNA-seq reads with fragment length parameters and write output to a file
kallisto,kallisto_08,kallisto_08_05,sysadmin,Use kallisto to quantify single-end RNA-seq reads with fragment length parameters and write output to a file
kallisto,kallisto_08,kallisto_08_06,goal_oriented,I want to quantify single-end RNA-seq reads with fragment length parameters and write output to a file
kallisto,kallisto_08,kallisto_08_07,expert,quantify single-end RNA-seq reads fragment length parameters write output file
kallisto,kallisto_08,kallisto_08_08,detailed,"I have data that I need to process: quantify single-end RNA-seq reads with fragment length parameters and write output to a file, utilizing multiple CPU threads for speed, saving the result to a specified output file"
kallisto,kallisto_08,kallisto_08_09,informal,"Hey, can you help me quantify single-end RNA-seq reads with fragment length parameters and write output to a file?"
kallisto,kallisto_08,kallisto_08_10,alternative,Write output to a file after quantify single-end RNA-seq reads with fragment length parameters
kallisto,kallisto_09,kallisto_09_01,original,quantify strand-specific reverse-strand paired-end RNA-seq in quiet mode
kallisto,kallisto_09,kallisto_09_02,beginner,How do I quantify strand-specific reverse-strand paired-end RNA-seq in quiet mode?
kallisto,kallisto_09,kallisto_09_03,student,I need to quantify strand-specific reverse-strand paired-end RNA-seq in quiet mode
kallisto,kallisto_09,kallisto_09_04,polite,Please quantify strand-specific reverse-strand paired-end RNA-seq in quiet mode
kallisto,kallisto_09,kallisto_09_05,sysadmin,Use kallisto to quantify strand-specific reverse-strand paired-end RNA-seq in quiet mode
kallisto,kallisto_09,kallisto_09_06,goal_oriented,I want to quantify strand-specific reverse-strand paired-end RNA-seq in quiet mode
kallisto,kallisto_09,kallisto_09_07,expert,quantify strand-specific reverse-strand paired-end RNA-seq quiet mode
kallisto,kallisto_09,kallisto_09_08,detailed,"I have data that I need to process: quantify strand-specific reverse-strand paired-end RNA-seq in quiet mode, utilizing multiple CPU threads for speed, saving the result to a specified output file"
kallisto,kallisto_09,kallisto_09_09,informal,"Hey, can you help me quantify strand-specific reverse-strand paired-end RNA-seq in quiet mode?"
kallisto,kallisto_09,kallisto_09_10,alternative,Perform: quantify strand-specific reverse-strand paired-end RNA-seq in quiet mode
kallisto,kallisto_10,kallisto_10_01,original,quantify multiple samples in batch with default parameters
kallisto,kallisto_10,kallisto_10_02,beginner,How do I quantify multiple samples in batch with default parameters?
kallisto,kallisto_10,kallisto_10_03,student,I need to quantify multiple samples in batch with default parameters
kallisto,kallisto_10,kallisto_10_04,polite,Please quantify multiple samples in batch with default parameters
kallisto,kallisto_10,kallisto_10_05,sysadmin,Use kallisto to quantify multiple samples in batch with default parameters
kallisto,kallisto_10,kallisto_10_06,goal_oriented,I want to quantify multiple samples in batch with default parameters
kallisto,kallisto_10,kallisto_10_07,expert,quantify multiple samples batch default parameters
kallisto,kallisto_10,kallisto_10_08,detailed,"I have data that I need to process: quantify multiple samples in batch with default parameters, utilizing multiple CPU threads for speed, saving the result to a specified output file"
kallisto,kallisto_10,kallisto_10_09,informal,"Hey, can you help me quantify multiple samples in batch with default parameters?"
kallisto,kallisto_10,kallisto_10_10,alternative,"With default parameters, quantify multiple samples in batch"
kb,kb_01,kb_01_01,original,build kb reference from genome and GTF
kb,kb_01,kb_01_02,beginner,How do I build kb reference from genome and GTF?
kb,kb_01,kb_01_03,student,I need to build kb reference from genome and GTF
kb,kb_01,kb_01_04,polite,Please build kb reference from genome and GTF
kb,kb_01,kb_01_05,sysadmin,Use kb to build kb reference from genome and GTF
kb,kb_01,kb_01_06,goal_oriented,I want to build kb reference from genome and GTF
kb,kb_01,kb_01_07,expert,build kb reference genome GTF
kb,kb_01,kb_01_08,detailed,I have data that I need to process: build kb reference from genome and GTF
kb,kb_01,kb_01_09,informal,"Hey, can you help me build kb reference from genome and GTF?"
kb,kb_01,kb_01_10,alternative,GTF after build kb reference from genome
kb,kb_02,kb_02_01,original,process 10x Chromium v3 scRNA-seq FASTQ files
kb,kb_02,kb_02_02,beginner,How do I process 10x Chromium v3 scRNA-seq FASTQ files?
kb,kb_02,kb_02_03,student,I need to process 10x Chromium v3 scRNA-seq FASTQ files
kb,kb_02,kb_02_04,polite,Please process 10x Chromium v3 scRNA-seq FASTQ files
kb,kb_02,kb_02_05,sysadmin,Use kb to process 10x Chromium v3 scRNA-seq FASTQ files
kb,kb_02,kb_02_06,goal_oriented,I want to process 10x Chromium v3 scRNA-seq FASTQ files
kb,kb_02,kb_02_07,expert,process 10x Chromium v3 scRNA-seq FASTQ files
kb,kb_02,kb_02_08,detailed,"I have data that I need to process: process 10x Chromium v3 scRNA-seq FASTQ files, utilizing multiple CPU threads for speed, saving the result to a specified output file"
kb,kb_02,kb_02_09,informal,"Hey, can you help me process 10x Chromium v3 scRNA-seq FASTQ files?"
kb,kb_02,kb_02_10,alternative,Perform: process 10x Chromium v3 scRNA-seq FASTQ files
kb,kb_03,kb_03_01,original,process scRNA-seq with RNA velocity output
kb,kb_03,kb_03_02,beginner,How do I process scRNA-seq with RNA velocity output?
kb,kb_03,kb_03_03,student,I need to process scRNA-seq with RNA velocity output
kb,kb_03,kb_03_04,polite,Please process scRNA-seq with RNA velocity output
kb,kb_03,kb_03_05,sysadmin,Use kb to process scRNA-seq with RNA velocity output
kb,kb_03,kb_03_06,goal_oriented,I want to process scRNA-seq with RNA velocity output
kb,kb_03,kb_03_07,expert,process scRNA-seq RNA velocity output
kb,kb_03,kb_03_08,detailed,"I have data that I need to process: process scRNA-seq with RNA velocity output, utilizing multiple CPU threads for speed, saving the result to a specified output file"
kb,kb_03,kb_03_09,informal,"Hey, can you help me process scRNA-seq with RNA velocity output?"
kb,kb_03,kb_03_10,alternative,"With RNA velocity output, process scRNA-seq"
kb,kb_04,kb_04_01,original,process 10x Chromium v3 and output AnnData for Scanpy
kb,kb_04,kb_04_02,beginner,How do I process 10x Chromium v3 and output AnnData for Scanpy?
kb,kb_04,kb_04_03,student,I need to process 10x Chromium v3 and output AnnData for Scanpy
kb,kb_04,kb_04_04,polite,Please process 10x Chromium v3 and output AnnData for Scanpy
kb,kb_04,kb_04_05,sysadmin,Use kb to process 10x Chromium v3 and output AnnData for Scanpy
kb,kb_04,kb_04_06,goal_oriented,I want to process 10x Chromium v3 and output AnnData for Scanpy
kb,kb_04,kb_04_07,expert,process 10x Chromium v3 output AnnData Scanpy
kb,kb_04,kb_04_08,detailed,"I have data that I need to process: process 10x Chromium v3 and output AnnData for Scanpy, utilizing multiple CPU threads for speed, saving the result to a specified output file"
kb,kb_04,kb_04_09,informal,"Hey, can you help me process 10x Chromium v3 and output AnnData for Scanpy?"
kb,kb_04,kb_04_10,alternative,Output AnnData for Scanpy after process 10x Chromium v3
kb,kb_05,kb_05_01,original,build kb reference from genome and GTF with default parameters
kb,kb_05,kb_05_02,beginner,How do I build kb reference from genome and GTF with default parameters?
kb,kb_05,kb_05_03,student,I need to build kb reference from genome and GTF with default parameters
kb,kb_05,kb_05_04,polite,Please build kb reference from genome and GTF with default parameters
kb,kb_05,kb_05_05,sysadmin,Use kb to build kb reference from genome and GTF with default parameters
kb,kb_05,kb_05_06,goal_oriented,I want to build kb reference from genome and GTF with default parameters
kb,kb_05,kb_05_07,expert,build kb reference genome GTF default parameters
kb,kb_05,kb_05_08,detailed,I have data that I need to process: build kb reference from genome and GTF with default parameters
kb,kb_05,kb_05_09,informal,"Hey, can you help me build kb reference from genome and GTF with default parameters?"
kb,kb_05,kb_05_10,alternative,GTF with default parameters after build kb reference from genome
kb,kb_06,kb_06_01,original,process 10x Chromium v3 scRNA-seq FASTQ files with verbose output
kb,kb_06,kb_06_02,beginner,How do I process 10x Chromium v3 scRNA-seq FASTQ files with verbose output?
kb,kb_06,kb_06_03,student,I need to process 10x Chromium v3 scRNA-seq FASTQ files with verbose output
kb,kb_06,kb_06_04,polite,Please process 10x Chromium v3 scRNA-seq FASTQ files with verbose output
kb,kb_06,kb_06_05,sysadmin,Use kb to process 10x Chromium v3 scRNA-seq FASTQ files with verbose output
kb,kb_06,kb_06_06,goal_oriented,I want to process 10x Chromium v3 scRNA-seq FASTQ files with verbose output
kb,kb_06,kb_06_07,expert,process 10x Chromium v3 scRNA-seq FASTQ files verbose output
kb,kb_06,kb_06_08,detailed,"I have data that I need to process: process 10x Chromium v3 scRNA-seq FASTQ files with verbose output, utilizing multiple CPU threads for speed, saving the result to a specified output file"
kb,kb_06,kb_06_09,informal,"Hey, can you help me process 10x Chromium v3 scRNA-seq FASTQ files with verbose output?"
kb,kb_06,kb_06_10,alternative,"With verbose output, process 10x Chromium v3 scRNA-seq FASTQ files"
kb,kb_07,kb_07_01,original,process scRNA-seq with RNA velocity output using multiple threads
kb,kb_07,kb_07_02,beginner,How do I process scRNA-seq with RNA velocity output using multiple threads?
kb,kb_07,kb_07_03,student,I need to process scRNA-seq with RNA velocity output using multiple threads
kb,kb_07,kb_07_04,polite,Please process scRNA-seq with RNA velocity output using multiple threads
kb,kb_07,kb_07_05,sysadmin,Use kb to process scRNA-seq with RNA velocity output using multiple threads
kb,kb_07,kb_07_06,goal_oriented,I want to process scRNA-seq with RNA velocity output using multiple threads
kb,kb_07,kb_07_07,expert,process scRNA-seq RNA velocity output multiple threads
kb,kb_07,kb_07_08,detailed,"I have data that I need to process: process scRNA-seq with RNA velocity output using multiple threads, utilizing multiple CPU threads for speed, saving the result to a specified output file"
kb,kb_07,kb_07_09,informal,"Hey, can you help me process scRNA-seq with RNA velocity output using multiple threads?"
kb,kb_07,kb_07_10,alternative,"With RNA velocity output using multiple threads, process scRNA-seq"
kb,kb_08,kb_08_01,original,process 10x Chromium v3 and output AnnData for Scanpy and write output to a file
kb,kb_08,kb_08_02,beginner,How do I process 10x Chromium v3 and output AnnData for Scanpy and write output to a file?
kb,kb_08,kb_08_03,student,I need to process 10x Chromium v3 and output AnnData for Scanpy and write output to a file
kb,kb_08,kb_08_04,polite,Please process 10x Chromium v3 and output AnnData for Scanpy and write output to a file
kb,kb_08,kb_08_05,sysadmin,Use kb to process 10x Chromium v3 and output AnnData for Scanpy and write output to a file
kb,kb_08,kb_08_06,goal_oriented,I want to process 10x Chromium v3 and output AnnData for Scanpy and write output to a file
kb,kb_08,kb_08_07,expert,process 10x Chromium v3 output AnnData Scanpy write output file
kb,kb_08,kb_08_08,detailed,"I have data that I need to process: process 10x Chromium v3 and output AnnData for Scanpy and write output to a file, utilizing multiple CPU threads for speed, saving the result to a specified output file"
kb,kb_08,kb_08_09,informal,"Hey, can you help me process 10x Chromium v3 and output AnnData for Scanpy and write output to a file?"
kb,kb_08,kb_08_10,alternative,Output AnnData for Scanpy and write output to a file after process 10x Chromium v3
kb,kb_09,kb_09_01,original,build kb reference from genome and GTF in quiet mode
kb,kb_09,kb_09_02,beginner,How do I build kb reference from genome and GTF in quiet mode?
kb,kb_09,kb_09_03,student,I need to build kb reference from genome and GTF in quiet mode
kb,kb_09,kb_09_04,polite,Please build kb reference from genome and GTF in quiet mode
kb,kb_09,kb_09_05,sysadmin,Use kb to build kb reference from genome and GTF in quiet mode
kb,kb_09,kb_09_06,goal_oriented,I want to build kb reference from genome and GTF in quiet mode
kb,kb_09,kb_09_07,expert,build kb reference genome GTF quiet mode
kb,kb_09,kb_09_08,detailed,I have data that I need to process: build kb reference from genome and GTF in quiet mode
kb,kb_09,kb_09_09,informal,"Hey, can you help me build kb reference from genome and GTF in quiet mode?"
kb,kb_09,kb_09_10,alternative,GTF in quiet mode after build kb reference from genome
kb,kb_10,kb_10_01,original,process 10x Chromium v3 scRNA-seq FASTQ files with default parameters
kb,kb_10,kb_10_02,beginner,How do I process 10x Chromium v3 scRNA-seq FASTQ files with default parameters?
kb,kb_10,kb_10_03,student,I need to process 10x Chromium v3 scRNA-seq FASTQ files with default parameters
kb,kb_10,kb_10_04,polite,Please process 10x Chromium v3 scRNA-seq FASTQ files with default parameters
kb,kb_10,kb_10_05,sysadmin,Use kb to process 10x Chromium v3 scRNA-seq FASTQ files with default parameters
kb,kb_10,kb_10_06,goal_oriented,I want to process 10x Chromium v3 scRNA-seq FASTQ files with default parameters
kb,kb_10,kb_10_07,expert,process 10x Chromium v3 scRNA-seq FASTQ files default parameters
kb,kb_10,kb_10_08,detailed,"I have data that I need to process: process 10x Chromium v3 scRNA-seq FASTQ files with default parameters, utilizing multiple CPU threads for speed, saving the result to a specified output file"
kb,kb_10,kb_10_09,informal,"Hey, can you help me process 10x Chromium v3 scRNA-seq FASTQ files with default parameters?"
kb,kb_10,kb_10_10,alternative,"With default parameters, process 10x Chromium v3 scRNA-seq FASTQ files"
kraken2,kraken2_01,kraken2_01_01,original,classify paired-end metagenomic reads against the standard database
kraken2,kraken2_01,kraken2_01_02,beginner,How do I classify paired-end metagenomic reads against the standard database?
kraken2,kraken2_01,kraken2_01_03,student,I need to classify paired-end metagenomic reads against the standard database
kraken2,kraken2_01,kraken2_01_04,polite,Please classify paired-end metagenomic reads against the standard database
kraken2,kraken2_01,kraken2_01_05,sysadmin,Use kraken2 to classify paired-end metagenomic reads against the standard database
kraken2,kraken2_01,kraken2_01_06,goal_oriented,I want to classify paired-end metagenomic reads against the standard database
kraken2,kraken2_01,kraken2_01_07,expert,classify paired-end metagenomic reads against standard database
kraken2,kraken2_01,kraken2_01_08,detailed,"I have data that I need to process: classify paired-end metagenomic reads against the standard database, utilizing multiple CPU threads for speed, saving the result to a specified output file"
kraken2,kraken2_01,kraken2_01_09,informal,"Hey, can you help me classify paired-end metagenomic reads against the standard database?"
kraken2,kraken2_01,kraken2_01_10,alternative,Perform: classify paired-end metagenomic reads against the standard database
kraken2,kraken2_02,kraken2_02_01,original,classify reads with confidence threshold and save unclassified reads
kraken2,kraken2_02,kraken2_02_02,beginner,How do I classify reads with confidence threshold and save unclassified reads?
kraken2,kraken2_02,kraken2_02_03,student,I need to classify reads with confidence threshold and save unclassified reads
kraken2,kraken2_02,kraken2_02_04,polite,Please classify reads with confidence threshold and save unclassified reads
kraken2,kraken2_02,kraken2_02_05,sysadmin,Use kraken2 to classify reads with confidence threshold and save unclassified reads
kraken2,kraken2_02,kraken2_02_06,goal_oriented,I want to classify reads with confidence threshold and save unclassified reads
kraken2,kraken2_02,kraken2_02_07,expert,classify reads confidence threshold save unclassified reads
kraken2,kraken2_02,kraken2_02_08,detailed,"I have data that I need to process: classify reads with confidence threshold and save unclassified reads, utilizing multiple CPU threads for speed, saving the result to a specified output file"
kraken2,kraken2_02,kraken2_02_09,informal,"Hey, can you help me classify reads with confidence threshold and save unclassified reads?"
kraken2,kraken2_02,kraken2_02_10,alternative,Save unclassified reads after classify reads with confidence threshold
kraken2,kraken2_03,kraken2_03_01,original,classify single-end reads and generate report
kraken2,kraken2_03,kraken2_03_02,beginner,How do I classify single-end reads and generate report?
kraken2,kraken2_03,kraken2_03_03,student,I need to classify single-end reads and generate report
kraken2,kraken2_03,kraken2_03_04,polite,Please classify single-end reads and generate report
kraken2,kraken2_03,kraken2_03_05,sysadmin,Use kraken2 to classify single-end reads and generate report
kraken2,kraken2_03,kraken2_03_06,goal_oriented,I want to classify single-end reads and generate report
kraken2,kraken2_03,kraken2_03_07,expert,classify single-end reads generate report
kraken2,kraken2_03,kraken2_03_08,detailed,"I have data that I need to process: classify single-end reads and generate report, utilizing multiple CPU threads for speed, saving the result to a specified output file"
kraken2,kraken2_03,kraken2_03_09,informal,"Hey, can you help me classify single-end reads and generate report?"
kraken2,kraken2_03,kraken2_03_10,alternative,Generate report after classify single-end reads
kraken2,kraken2_04,kraken2_04_01,original,classify reads and extract classified reads for downstream analysis
kraken2,kraken2_04,kraken2_04_02,beginner,How do I classify reads and extract classified reads for downstream analysis?
kraken2,kraken2_04,kraken2_04_03,student,I need to classify reads and extract classified reads for downstream analysis
kraken2,kraken2_04,kraken2_04_04,polite,Please classify reads and extract classified reads for downstream analysis
kraken2,kraken2_04,kraken2_04_05,sysadmin,Use kraken2 to classify reads and extract classified reads for downstream analysis
kraken2,kraken2_04,kraken2_04_06,goal_oriented,I want to classify reads and extract classified reads for downstream analysis
kraken2,kraken2_04,kraken2_04_07,expert,classify reads extract classified reads downstream analysis
kraken2,kraken2_04,kraken2_04_08,detailed,"I have data that I need to process: classify reads and extract classified reads for downstream analysis, utilizing multiple CPU threads for speed, saving the result to a specified output file"
kraken2,kraken2_04,kraken2_04_09,informal,"Hey, can you help me classify reads and extract classified reads for downstream analysis?"
kraken2,kraken2_04,kraken2_04_10,alternative,Extract classified reads for downstream analysis after classify reads
kraken2,kraken2_05,kraken2_05_01,original,classify paired-end metagenomic reads against the standard database with default parameters
kraken2,kraken2_05,kraken2_05_02,beginner,How do I classify paired-end metagenomic reads against the standard database with default parameters?
kraken2,kraken2_05,kraken2_05_03,student,I need to classify paired-end metagenomic reads against the standard database with default parameters
kraken2,kraken2_05,kraken2_05_04,polite,Please classify paired-end metagenomic reads against the standard database with default parameters
kraken2,kraken2_05,kraken2_05_05,sysadmin,Use kraken2 to classify paired-end metagenomic reads against the standard database with default parameters
kraken2,kraken2_05,kraken2_05_06,goal_oriented,I want to classify paired-end metagenomic reads against the standard database with default parameters
kraken2,kraken2_05,kraken2_05_07,expert,classify paired-end metagenomic reads against standard database default parameters
kraken2,kraken2_05,kraken2_05_08,detailed,"I have data that I need to process: classify paired-end metagenomic reads against the standard database with default parameters, utilizing multiple CPU threads for speed, saving the result to a specified output file"
kraken2,kraken2_05,kraken2_05_09,informal,"Hey, can you help me classify paired-end metagenomic reads against the standard database with default parameters?"
kraken2,kraken2_05,kraken2_05_10,alternative,"With default parameters, classify paired-end metagenomic reads against the standard database"
kraken2,kraken2_06,kraken2_06_01,original,classify reads with confidence threshold and save unclassified reads with verbose output
kraken2,kraken2_06,kraken2_06_02,beginner,How do I classify reads with confidence threshold and save unclassified reads with verbose output?
kraken2,kraken2_06,kraken2_06_03,student,I need to classify reads with confidence threshold and save unclassified reads with verbose output
kraken2,kraken2_06,kraken2_06_04,polite,Please classify reads with confidence threshold and save unclassified reads with verbose output
kraken2,kraken2_06,kraken2_06_05,sysadmin,Use kraken2 to classify reads with confidence threshold and save unclassified reads with verbose output
kraken2,kraken2_06,kraken2_06_06,goal_oriented,I want to classify reads with confidence threshold and save unclassified reads with verbose output
kraken2,kraken2_06,kraken2_06_07,expert,classify reads confidence threshold save unclassified reads verbose output
kraken2,kraken2_06,kraken2_06_08,detailed,"I have data that I need to process: classify reads with confidence threshold and save unclassified reads with verbose output, utilizing multiple CPU threads for speed, saving the result to a specified output file"
kraken2,kraken2_06,kraken2_06_09,informal,"Hey, can you help me classify reads with confidence threshold and save unclassified reads with verbose output?"
kraken2,kraken2_06,kraken2_06_10,alternative,Save unclassified reads with verbose output after classify reads with confidence threshold
kraken2,kraken2_07,kraken2_07_01,original,classify single-end reads and generate report using multiple threads
kraken2,kraken2_07,kraken2_07_02,beginner,How do I classify single-end reads and generate report using multiple threads?
kraken2,kraken2_07,kraken2_07_03,student,I need to classify single-end reads and generate report using multiple threads
kraken2,kraken2_07,kraken2_07_04,polite,Please classify single-end reads and generate report using multiple threads
kraken2,kraken2_07,kraken2_07_05,sysadmin,Use kraken2 to classify single-end reads and generate report using multiple threads
kraken2,kraken2_07,kraken2_07_06,goal_oriented,I want to classify single-end reads and generate report using multiple threads
kraken2,kraken2_07,kraken2_07_07,expert,classify single-end reads generate report multiple threads
kraken2,kraken2_07,kraken2_07_08,detailed,"I have data that I need to process: classify single-end reads and generate report using multiple threads, utilizing multiple CPU threads for speed, saving the result to a specified output file"
kraken2,kraken2_07,kraken2_07_09,informal,"Hey, can you help me classify single-end reads and generate report using multiple threads?"
kraken2,kraken2_07,kraken2_07_10,alternative,Generate report using multiple threads after classify single-end reads
kraken2,kraken2_08,kraken2_08_01,original,classify reads and extract classified reads for downstream analysis and write output to a file
kraken2,kraken2_08,kraken2_08_02,beginner,How do I classify reads and extract classified reads for downstream analysis and write output to a file?
kraken2,kraken2_08,kraken2_08_03,student,I need to classify reads and extract classified reads for downstream analysis and write output to a file
kraken2,kraken2_08,kraken2_08_04,polite,Please classify reads and extract classified reads for downstream analysis and write output to a file
kraken2,kraken2_08,kraken2_08_05,sysadmin,Use kraken2 to classify reads and extract classified reads for downstream analysis and write output to a file
kraken2,kraken2_08,kraken2_08_06,goal_oriented,I want to classify reads and extract classified reads for downstream analysis and write output to a file
kraken2,kraken2_08,kraken2_08_07,expert,classify reads extract classified reads downstream analysis write output file
kraken2,kraken2_08,kraken2_08_08,detailed,"I have data that I need to process: classify reads and extract classified reads for downstream analysis and write output to a file, utilizing multiple CPU threads for speed, saving the result to a specified output file"
kraken2,kraken2_08,kraken2_08_09,informal,"Hey, can you help me classify reads and extract classified reads for downstream analysis and write output to a file?"
kraken2,kraken2_08,kraken2_08_10,alternative,Extract classified reads for downstream analysis and write output to a file after classify reads
kraken2,kraken2_09,kraken2_09_01,original,classify paired-end metagenomic reads against the standard database in quiet mode
kraken2,kraken2_09,kraken2_09_02,beginner,How do I classify paired-end metagenomic reads against the standard database in quiet mode?
kraken2,kraken2_09,kraken2_09_03,student,I need to classify paired-end metagenomic reads against the standard database in quiet mode
kraken2,kraken2_09,kraken2_09_04,polite,Please classify paired-end metagenomic reads against the standard database in quiet mode
kraken2,kraken2_09,kraken2_09_05,sysadmin,Use kraken2 to classify paired-end metagenomic reads against the standard database in quiet mode
kraken2,kraken2_09,kraken2_09_06,goal_oriented,I want to classify paired-end metagenomic reads against the standard database in quiet mode
kraken2,kraken2_09,kraken2_09_07,expert,classify paired-end metagenomic reads against standard database quiet mode
kraken2,kraken2_09,kraken2_09_08,detailed,"I have data that I need to process: classify paired-end metagenomic reads against the standard database in quiet mode, utilizing multiple CPU threads for speed, saving the result to a specified output file"
kraken2,kraken2_09,kraken2_09_09,informal,"Hey, can you help me classify paired-end metagenomic reads against the standard database in quiet mode?"
kraken2,kraken2_09,kraken2_09_10,alternative,Perform: classify paired-end metagenomic reads against the standard database in quiet mode
kraken2,kraken2_10,kraken2_10_01,original,classify reads with confidence threshold and save unclassified reads with default parameters
kraken2,kraken2_10,kraken2_10_02,beginner,How do I classify reads with confidence threshold and save unclassified reads with default parameters?
kraken2,kraken2_10,kraken2_10_03,student,I need to classify reads with confidence threshold and save unclassified reads with default parameters
kraken2,kraken2_10,kraken2_10_04,polite,Please classify reads with confidence threshold and save unclassified reads with default parameters
kraken2,kraken2_10,kraken2_10_05,sysadmin,Use kraken2 to classify reads with confidence threshold and save unclassified reads with default parameters
kraken2,kraken2_10,kraken2_10_06,goal_oriented,I want to classify reads with confidence threshold and save unclassified reads with default parameters
kraken2,kraken2_10,kraken2_10_07,expert,classify reads confidence threshold save unclassified reads default parameters
kraken2,kraken2_10,kraken2_10_08,detailed,"I have data that I need to process: classify reads with confidence threshold and save unclassified reads with default parameters, utilizing multiple CPU threads for speed, saving the result to a specified output file"
kraken2,kraken2_10,kraken2_10_09,informal,"Hey, can you help me classify reads with confidence threshold and save unclassified reads with default parameters?"
kraken2,kraken2_10,kraken2_10_10,alternative,Save unclassified reads with default parameters after classify reads with confidence threshold
liftoff,liftoff_01,liftoff_01_01,original,lift annotations from reference GFF3 to a new assembly
liftoff,liftoff_01,liftoff_01_02,beginner,How do I lift annotations from reference GFF3 to a new assembly?
liftoff,liftoff_01,liftoff_01_03,student,I need to lift annotations from reference GFF3 to a new assembly
liftoff,liftoff_01,liftoff_01_04,polite,Please lift annotations from reference GFF3 to a new assembly
liftoff,liftoff_01,liftoff_01_05,sysadmin,Use liftoff to lift annotations from reference GFF3 to a new assembly
liftoff,liftoff_01,liftoff_01_06,goal_oriented,I want to lift annotations from reference GFF3 to a new assembly
liftoff,liftoff_01,liftoff_01_07,expert,lift annotations reference GFF3 new assembly
liftoff,liftoff_01,liftoff_01_08,detailed,"I have data that I need to process: lift annotations from reference GFF3 to a new assembly, saving the result to a specified output file"
liftoff,liftoff_01,liftoff_01_09,informal,"Hey, can you help me lift annotations from reference GFF3 to a new assembly?"
liftoff,liftoff_01,liftoff_01_10,alternative,Output a new assembly by performing: lift annotations from reference GFF3
liftoff,liftoff_02,liftoff_02_01,original,lift annotations and copy multi-copy gene families
liftoff,liftoff_02,liftoff_02_02,beginner,How do I lift annotations and copy multi-copy gene families?
liftoff,liftoff_02,liftoff_02_03,student,I need to lift annotations and copy multi-copy gene families
liftoff,liftoff_02,liftoff_02_04,polite,Please lift annotations and copy multi-copy gene families
liftoff,liftoff_02,liftoff_02_05,sysadmin,Use liftoff to lift annotations and copy multi-copy gene families
liftoff,liftoff_02,liftoff_02_06,goal_oriented,I want to lift annotations and copy multi-copy gene families
liftoff,liftoff_02,liftoff_02_07,expert,lift annotations copy multi-copy gene families
liftoff,liftoff_02,liftoff_02_08,detailed,"I have data that I need to process: lift annotations and copy multi-copy gene families, saving the result to a specified output file"
liftoff,liftoff_02,liftoff_02_09,informal,"Hey, can you help me lift annotations and copy multi-copy gene families?"
liftoff,liftoff_02,liftoff_02_10,alternative,Copy multi-copy gene families after lift annotations
liftoff,liftoff_03,liftoff_03_01,original,lift annotations between closely related species with lower identity threshold
liftoff,liftoff_03,liftoff_03_02,beginner,How do I lift annotations between closely related species with lower identity threshold?
liftoff,liftoff_03,liftoff_03_03,student,I need to lift annotations between closely related species with lower identity threshold
liftoff,liftoff_03,liftoff_03_04,polite,Please lift annotations between closely related species with lower identity threshold
liftoff,liftoff_03,liftoff_03_05,sysadmin,Use liftoff to lift annotations between closely related species with lower identity threshold
liftoff,liftoff_03,liftoff_03_06,goal_oriented,I want to lift annotations between closely related species with lower identity threshold
liftoff,liftoff_03,liftoff_03_07,expert,lift annotations between closely related species lower identity threshold
liftoff,liftoff_03,liftoff_03_08,detailed,"I have data that I need to process: lift annotations between closely related species with lower identity threshold, saving the result to a specified output file"
liftoff,liftoff_03,liftoff_03_09,informal,"Hey, can you help me lift annotations between closely related species with lower identity threshold?"
liftoff,liftoff_03,liftoff_03_10,alternative,"With lower identity threshold, lift annotations between closely related species"
liftoff,liftoff_04,liftoff_04_01,original,speed up repeated runs using a pre-built gffutils database
liftoff,liftoff_04,liftoff_04_02,beginner,How do I speed up repeated runs using a pre-built gffutils database?
liftoff,liftoff_04,liftoff_04_03,student,I need to speed up repeated runs using a pre-built gffutils database
liftoff,liftoff_04,liftoff_04_04,polite,Please speed up repeated runs using a pre-built gffutils database
liftoff,liftoff_04,liftoff_04_05,sysadmin,Use liftoff to speed up repeated runs using a pre-built gffutils database
liftoff,liftoff_04,liftoff_04_06,goal_oriented,I want to speed up repeated runs using a pre-built gffutils database
liftoff,liftoff_04,liftoff_04_07,expert,speed up repeated runs pre-built gffutils database
liftoff,liftoff_04,liftoff_04_08,detailed,"I have data that I need to process: speed up repeated runs using a pre-built gffutils database, saving the result to a specified output file"
liftoff,liftoff_04,liftoff_04_09,informal,"Hey, can you help me speed up repeated runs using a pre-built gffutils database?"
liftoff,liftoff_04,liftoff_04_10,alternative,Perform: speed up repeated runs using a pre-built gffutils database
liftoff,liftoff_05,liftoff_05_01,original,lift annotations and write output to a specific directory with minimap2 intermediates
liftoff,liftoff_05,liftoff_05_02,beginner,How do I lift annotations and write output to a specific directory with minimap2 intermediates?
liftoff,liftoff_05,liftoff_05_03,student,I need to lift annotations and write output to a specific directory with minimap2 intermediates
liftoff,liftoff_05,liftoff_05_04,polite,Please lift annotations and write output to a specific directory with minimap2 intermediates
liftoff,liftoff_05,liftoff_05_05,sysadmin,Use liftoff to lift annotations and write output to a specific directory with minimap2 intermediates
liftoff,liftoff_05,liftoff_05_06,goal_oriented,I want to lift annotations and write output to a specific directory with minimap2 intermediates
liftoff,liftoff_05,liftoff_05_07,expert,lift annotations write output specific directory minimap2 intermediates
liftoff,liftoff_05,liftoff_05_08,detailed,"I have data that I need to process: lift annotations and write output to a specific directory with minimap2 intermediates, utilizing multiple CPU threads for speed, saving the result to a specified output file"
liftoff,liftoff_05,liftoff_05_09,informal,"Hey, can you help me lift annotations and write output to a specific directory with minimap2 intermediates?"
liftoff,liftoff_05,liftoff_05_10,alternative,Write output to a specific directory with minimap2 intermediates after lift annotations
liftoff,liftoff_06,liftoff_06_01,original,"lift only specific feature types (e.g., just genes)"
liftoff,liftoff_06,liftoff_06_02,beginner,"How do I lift only specific feature types (e.g., just genes)?"
liftoff,liftoff_06,liftoff_06_03,student,"I need to lift only specific feature types (e.g., just genes)"
liftoff,liftoff_06,liftoff_06_04,polite,"Please lift only specific feature types (e.g., just genes)"
liftoff,liftoff_06,liftoff_06_05,sysadmin,"Use liftoff to lift only specific feature types (e.g., just genes)"
liftoff,liftoff_06,liftoff_06_06,goal_oriented,"I want to lift only specific feature types (e.g., just genes)"
liftoff,liftoff_06,liftoff_06_07,expert,"lift only specific feature types (e.g., just genes)"
liftoff,liftoff_06,liftoff_06_08,detailed,"I have data that I need to process: lift only specific feature types (e.g., just genes), saving the result to a specified output file"
liftoff,liftoff_06,liftoff_06_09,informal,"Hey, can you help me lift only specific feature types (e.g., just genes)?"
liftoff,liftoff_06,liftoff_06_10,alternative,"Perform: lift only specific feature types (e.g., just genes)"
liftoff,liftoff_07,liftoff_07_01,original,lift annotations from reference GFF3 to a new assembly using multiple threads
liftoff,liftoff_07,liftoff_07_02,beginner,How do I lift annotations from reference GFF3 to a new assembly using multiple threads?
liftoff,liftoff_07,liftoff_07_03,student,I need to lift annotations from reference GFF3 to a new assembly using multiple threads
liftoff,liftoff_07,liftoff_07_04,polite,Please lift annotations from reference GFF3 to a new assembly using multiple threads
liftoff,liftoff_07,liftoff_07_05,sysadmin,Use liftoff to lift annotations from reference GFF3 to a new assembly using multiple threads
liftoff,liftoff_07,liftoff_07_06,goal_oriented,I want to lift annotations from reference GFF3 to a new assembly using multiple threads
liftoff,liftoff_07,liftoff_07_07,expert,lift annotations reference GFF3 new assembly multiple threads
liftoff,liftoff_07,liftoff_07_08,detailed,"I have data that I need to process: lift annotations from reference GFF3 to a new assembly using multiple threads, utilizing multiple CPU threads for speed, saving the result to a specified output file"
liftoff,liftoff_07,liftoff_07_09,informal,"Hey, can you help me lift annotations from reference GFF3 to a new assembly using multiple threads?"
liftoff,liftoff_07,liftoff_07_10,alternative,Output a new assembly using multiple threads by performing: lift annotations from reference GFF3
liftoff,liftoff_08,liftoff_08_01,original,lift annotations and copy multi-copy gene families and write output to a file
liftoff,liftoff_08,liftoff_08_02,beginner,How do I lift annotations and copy multi-copy gene families and write output to a file?
liftoff,liftoff_08,liftoff_08_03,student,I need to lift annotations and copy multi-copy gene families and write output to a file
liftoff,liftoff_08,liftoff_08_04,polite,Please lift annotations and copy multi-copy gene families and write output to a file
liftoff,liftoff_08,liftoff_08_05,sysadmin,Use liftoff to lift annotations and copy multi-copy gene families and write output to a file
liftoff,liftoff_08,liftoff_08_06,goal_oriented,I want to lift annotations and copy multi-copy gene families and write output to a file
liftoff,liftoff_08,liftoff_08_07,expert,lift annotations copy multi-copy gene families write output file
liftoff,liftoff_08,liftoff_08_08,detailed,"I have data that I need to process: lift annotations and copy multi-copy gene families and write output to a file, saving the result to a specified output file"
liftoff,liftoff_08,liftoff_08_09,informal,"Hey, can you help me lift annotations and copy multi-copy gene families and write output to a file?"
liftoff,liftoff_08,liftoff_08_10,alternative,Copy multi-copy gene families and write output to a file after lift annotations
liftoff,liftoff_09,liftoff_09_01,original,lift annotations between closely related species with lower identity threshold in quiet mode
liftoff,liftoff_09,liftoff_09_02,beginner,How do I lift annotations between closely related species with lower identity threshold in quiet mode?
liftoff,liftoff_09,liftoff_09_03,student,I need to lift annotations between closely related species with lower identity threshold in quiet mode
liftoff,liftoff_09,liftoff_09_04,polite,Please lift annotations between closely related species with lower identity threshold in quiet mode
liftoff,liftoff_09,liftoff_09_05,sysadmin,Use liftoff to lift annotations between closely related species with lower identity threshold in quiet mode
liftoff,liftoff_09,liftoff_09_06,goal_oriented,I want to lift annotations between closely related species with lower identity threshold in quiet mode
liftoff,liftoff_09,liftoff_09_07,expert,lift annotations between closely related species lower identity threshold quiet mode
liftoff,liftoff_09,liftoff_09_08,detailed,"I have data that I need to process: lift annotations between closely related species with lower identity threshold in quiet mode, saving the result to a specified output file"
liftoff,liftoff_09,liftoff_09_09,informal,"Hey, can you help me lift annotations between closely related species with lower identity threshold in quiet mode?"
liftoff,liftoff_09,liftoff_09_10,alternative,"With lower identity threshold in quiet mode, lift annotations between closely related species"
liftoff,liftoff_10,liftoff_10_01,original,speed up repeated runs using a pre-built gffutils database with default parameters
liftoff,liftoff_10,liftoff_10_02,beginner,How do I speed up repeated runs using a pre-built gffutils database with default parameters?
liftoff,liftoff_10,liftoff_10_03,student,I need to speed up repeated runs using a pre-built gffutils database with default parameters
liftoff,liftoff_10,liftoff_10_04,polite,Please speed up repeated runs using a pre-built gffutils database with default parameters
liftoff,liftoff_10,liftoff_10_05,sysadmin,Use liftoff to speed up repeated runs using a pre-built gffutils database with default parameters
liftoff,liftoff_10,liftoff_10_06,goal_oriented,I want to speed up repeated runs using a pre-built gffutils database with default parameters
liftoff,liftoff_10,liftoff_10_07,expert,speed up repeated runs pre-built gffutils database default parameters
liftoff,liftoff_10,liftoff_10_08,detailed,"I have data that I need to process: speed up repeated runs using a pre-built gffutils database with default parameters, saving the result to a specified output file"
liftoff,liftoff_10,liftoff_10_09,informal,"Hey, can you help me speed up repeated runs using a pre-built gffutils database with default parameters?"
liftoff,liftoff_10,liftoff_10_10,alternative,"With default parameters, speed up repeated runs using a pre-built gffutils database"
longshot,longshot_01,longshot_01_01,original,call SNPs from Oxford Nanopore aligned reads
longshot,longshot_01,longshot_01_02,beginner,How do I call SNPs from Oxford Nanopore aligned reads?
longshot,longshot_01,longshot_01_03,student,I need to call SNPs from Oxford Nanopore aligned reads
longshot,longshot_01,longshot_01_04,polite,Please call SNPs from Oxford Nanopore aligned reads
longshot,longshot_01,longshot_01_05,sysadmin,Use longshot to call SNPs from Oxford Nanopore aligned reads
longshot,longshot_01,longshot_01_06,goal_oriented,I want to call SNPs from Oxford Nanopore aligned reads
longshot,longshot_01,longshot_01_07,expert,call SNPs Oxford Nanopore aligned reads
longshot,longshot_01,longshot_01_08,detailed,"I have data that I need to process: call SNPs from Oxford Nanopore aligned reads, saving the result to a specified output file"
longshot,longshot_01,longshot_01_09,informal,"Hey, can you help me call SNPs from Oxford Nanopore aligned reads?"
longshot,longshot_01,longshot_01_10,alternative,Perform: call SNPs from Oxford Nanopore aligned reads
longshot,longshot_02,longshot_02_01,original,call SNPs restricted to a specific region
longshot,longshot_02,longshot_02_02,beginner,How do I call SNPs restricted to a specific region?
longshot,longshot_02,longshot_02_03,student,I need to call SNPs restricted to a specific region
longshot,longshot_02,longshot_02_04,polite,Please call SNPs restricted to a specific region
longshot,longshot_02,longshot_02_05,sysadmin,Use longshot to call SNPs restricted to a specific region
longshot,longshot_02,longshot_02_06,goal_oriented,I want to call SNPs restricted to a specific region
longshot,longshot_02,longshot_02_07,expert,call SNPs restricted specific region
longshot,longshot_02,longshot_02_08,detailed,"I have data that I need to process: call SNPs restricted to a specific region, saving the result to a specified output file"
longshot,longshot_02,longshot_02_09,informal,"Hey, can you help me call SNPs restricted to a specific region?"
longshot,longshot_02,longshot_02_10,alternative,Output a specific region by performing: call SNPs restricted
longshot,longshot_03,longshot_03_01,original,call SNPs with minimum coverage filter
longshot,longshot_03,longshot_03_02,beginner,How do I call SNPs with minimum coverage filter?
longshot,longshot_03,longshot_03_03,student,I need to call SNPs with minimum coverage filter
longshot,longshot_03,longshot_03_04,polite,Please call SNPs with minimum coverage filter
longshot,longshot_03,longshot_03_05,sysadmin,Use longshot to call SNPs with minimum coverage filter
longshot,longshot_03,longshot_03_06,goal_oriented,I want to call SNPs with minimum coverage filter
longshot,longshot_03,longshot_03_07,expert,call SNPs minimum coverage filter
longshot,longshot_03,longshot_03_08,detailed,"I have data that I need to process: call SNPs with minimum coverage filter, saving the result to a specified output file"
longshot,longshot_03,longshot_03_09,informal,"Hey, can you help me call SNPs with minimum coverage filter?"
longshot,longshot_03,longshot_03_10,alternative,"With minimum coverage filter, call SNPs"
longshot,longshot_04,longshot_04_01,original,call SNPs from Oxford Nanopore aligned reads in quiet mode
longshot,longshot_04,longshot_04_02,beginner,How do I call SNPs from Oxford Nanopore aligned reads in quiet mode?
longshot,longshot_04,longshot_04_03,student,I need to call SNPs from Oxford Nanopore aligned reads in quiet mode
longshot,longshot_04,longshot_04_04,polite,Please call SNPs from Oxford Nanopore aligned reads in quiet mode
longshot,longshot_04,longshot_04_05,sysadmin,Use longshot to call SNPs from Oxford Nanopore aligned reads in quiet mode
longshot,longshot_04,longshot_04_06,goal_oriented,I want to call SNPs from Oxford Nanopore aligned reads in quiet mode
longshot,longshot_04,longshot_04_07,expert,call SNPs Oxford Nanopore aligned reads quiet mode
longshot,longshot_04,longshot_04_08,detailed,"I have data that I need to process: call SNPs from Oxford Nanopore aligned reads in quiet mode, saving the result to a specified output file"
longshot,longshot_04,longshot_04_09,informal,"Hey, can you help me call SNPs from Oxford Nanopore aligned reads in quiet mode?"
longshot,longshot_04,longshot_04_10,alternative,Perform: call SNPs from Oxford Nanopore aligned reads in quiet mode
longshot,longshot_05,longshot_05_01,original,call SNPs restricted to a specific region with default parameters
longshot,longshot_05,longshot_05_02,beginner,How do I call SNPs restricted to a specific region with default parameters?
longshot,longshot_05,longshot_05_03,student,I need to call SNPs restricted to a specific region with default parameters
longshot,longshot_05,longshot_05_04,polite,Please call SNPs restricted to a specific region with default parameters
longshot,longshot_05,longshot_05_05,sysadmin,Use longshot to call SNPs restricted to a specific region with default parameters
longshot,longshot_05,longshot_05_06,goal_oriented,I want to call SNPs restricted to a specific region with default parameters
longshot,longshot_05,longshot_05_07,expert,call SNPs restricted specific region default parameters
longshot,longshot_05,longshot_05_08,detailed,"I have data that I need to process: call SNPs restricted to a specific region with default parameters, saving the result to a specified output file"
longshot,longshot_05,longshot_05_09,informal,"Hey, can you help me call SNPs restricted to a specific region with default parameters?"
longshot,longshot_05,longshot_05_10,alternative,"With default parameters, call SNPs restricted to a specific region"
longshot,longshot_06,longshot_06_01,original,call SNPs with minimum coverage filter with verbose output
longshot,longshot_06,longshot_06_02,beginner,How do I call SNPs with minimum coverage filter with verbose output?
longshot,longshot_06,longshot_06_03,student,I need to call SNPs with minimum coverage filter with verbose output
longshot,longshot_06,longshot_06_04,polite,Please call SNPs with minimum coverage filter with verbose output
longshot,longshot_06,longshot_06_05,sysadmin,Use longshot to call SNPs with minimum coverage filter with verbose output
longshot,longshot_06,longshot_06_06,goal_oriented,I want to call SNPs with minimum coverage filter with verbose output
longshot,longshot_06,longshot_06_07,expert,call SNPs minimum coverage filter verbose output
longshot,longshot_06,longshot_06_08,detailed,"I have data that I need to process: call SNPs with minimum coverage filter with verbose output, saving the result to a specified output file"
longshot,longshot_06,longshot_06_09,informal,"Hey, can you help me call SNPs with minimum coverage filter with verbose output?"
longshot,longshot_06,longshot_06_10,alternative,"With minimum coverage filter with verbose output, call SNPs"
longshot,longshot_07,longshot_07_01,original,call SNPs from Oxford Nanopore aligned reads using multiple threads
longshot,longshot_07,longshot_07_02,beginner,How do I call SNPs from Oxford Nanopore aligned reads using multiple threads?
longshot,longshot_07,longshot_07_03,student,I need to call SNPs from Oxford Nanopore aligned reads using multiple threads
longshot,longshot_07,longshot_07_04,polite,Please call SNPs from Oxford Nanopore aligned reads using multiple threads
longshot,longshot_07,longshot_07_05,sysadmin,Use longshot to call SNPs from Oxford Nanopore aligned reads using multiple threads
longshot,longshot_07,longshot_07_06,goal_oriented,I want to call SNPs from Oxford Nanopore aligned reads using multiple threads
longshot,longshot_07,longshot_07_07,expert,call SNPs Oxford Nanopore aligned reads multiple threads
longshot,longshot_07,longshot_07_08,detailed,"I have data that I need to process: call SNPs from Oxford Nanopore aligned reads using multiple threads, utilizing multiple CPU threads for speed, saving the result to a specified output file"
longshot,longshot_07,longshot_07_09,informal,"Hey, can you help me call SNPs from Oxford Nanopore aligned reads using multiple threads?"
longshot,longshot_07,longshot_07_10,alternative,Perform: call SNPs from Oxford Nanopore aligned reads using multiple threads
longshot,longshot_08,longshot_08_01,original,call SNPs restricted to a specific region and write output to a file
longshot,longshot_08,longshot_08_02,beginner,How do I call SNPs restricted to a specific region and write output to a file?
longshot,longshot_08,longshot_08_03,student,I need to call SNPs restricted to a specific region and write output to a file
longshot,longshot_08,longshot_08_04,polite,Please call SNPs restricted to a specific region and write output to a file
longshot,longshot_08,longshot_08_05,sysadmin,Use longshot to call SNPs restricted to a specific region and write output to a file
longshot,longshot_08,longshot_08_06,goal_oriented,I want to call SNPs restricted to a specific region and write output to a file
longshot,longshot_08,longshot_08_07,expert,call SNPs restricted specific region write output file
longshot,longshot_08,longshot_08_08,detailed,"I have data that I need to process: call SNPs restricted to a specific region and write output to a file, saving the result to a specified output file"
longshot,longshot_08,longshot_08_09,informal,"Hey, can you help me call SNPs restricted to a specific region and write output to a file?"
longshot,longshot_08,longshot_08_10,alternative,Write output to a file after call SNPs restricted to a specific region
longshot,longshot_09,longshot_09_01,original,call SNPs with minimum coverage filter in quiet mode
longshot,longshot_09,longshot_09_02,beginner,How do I call SNPs with minimum coverage filter in quiet mode?
longshot,longshot_09,longshot_09_03,student,I need to call SNPs with minimum coverage filter in quiet mode
longshot,longshot_09,longshot_09_04,polite,Please call SNPs with minimum coverage filter in quiet mode
longshot,longshot_09,longshot_09_05,sysadmin,Use longshot to call SNPs with minimum coverage filter in quiet mode
longshot,longshot_09,longshot_09_06,goal_oriented,I want to call SNPs with minimum coverage filter in quiet mode
longshot,longshot_09,longshot_09_07,expert,call SNPs minimum coverage filter quiet mode
longshot,longshot_09,longshot_09_08,detailed,"I have data that I need to process: call SNPs with minimum coverage filter in quiet mode, saving the result to a specified output file"
longshot,longshot_09,longshot_09_09,informal,"Hey, can you help me call SNPs with minimum coverage filter in quiet mode?"
longshot,longshot_09,longshot_09_10,alternative,"With minimum coverage filter in quiet mode, call SNPs"
longshot,longshot_10,longshot_10_01,original,call SNPs from Oxford Nanopore aligned reads with default parameters
longshot,longshot_10,longshot_10_02,beginner,How do I call SNPs from Oxford Nanopore aligned reads with default parameters?
longshot,longshot_10,longshot_10_03,student,I need to call SNPs from Oxford Nanopore aligned reads with default parameters
longshot,longshot_10,longshot_10_04,polite,Please call SNPs from Oxford Nanopore aligned reads with default parameters
longshot,longshot_10,longshot_10_05,sysadmin,Use longshot to call SNPs from Oxford Nanopore aligned reads with default parameters
longshot,longshot_10,longshot_10_06,goal_oriented,I want to call SNPs from Oxford Nanopore aligned reads with default parameters
longshot,longshot_10,longshot_10_07,expert,call SNPs Oxford Nanopore aligned reads default parameters
longshot,longshot_10,longshot_10_08,detailed,"I have data that I need to process: call SNPs from Oxford Nanopore aligned reads with default parameters, saving the result to a specified output file"
longshot,longshot_10,longshot_10_09,informal,"Hey, can you help me call SNPs from Oxford Nanopore aligned reads with default parameters?"
longshot,longshot_10,longshot_10_10,alternative,"With default parameters, call SNPs from Oxford Nanopore aligned reads"
macs2,macs2_01,macs2_01_01,original,call narrow peaks from ChIP-seq data with input control
macs2,macs2_01,macs2_01_02,beginner,How do I call narrow peaks from ChIP-seq data with input control?
macs2,macs2_01,macs2_01_03,student,I need to call narrow peaks from ChIP-seq data with input control
macs2,macs2_01,macs2_01_04,polite,Please call narrow peaks from ChIP-seq data with input control
macs2,macs2_01,macs2_01_05,sysadmin,Use macs2 to call narrow peaks from ChIP-seq data with input control
macs2,macs2_01,macs2_01_06,goal_oriented,I want to call narrow peaks from ChIP-seq data with input control
macs2,macs2_01,macs2_01_07,expert,call narrow peaks ChIP-seq data input control
macs2,macs2_01,macs2_01_08,detailed,"I have data that I need to process: call narrow peaks from ChIP-seq data with input control, utilizing multiple CPU threads for speed"
macs2,macs2_01,macs2_01_09,informal,"Hey, can you help me call narrow peaks from ChIP-seq data with input control?"
macs2,macs2_01,macs2_01_10,alternative,"With input control, call narrow peaks from ChIP-seq data"
macs2,macs2_02,macs2_02_01,original,call broad peaks for histone mark (H3K27me3) ChIP-seq
macs2,macs2_02,macs2_02_02,beginner,How do I call broad peaks for histone mark (H3K27me3) ChIP-seq?
macs2,macs2_02,macs2_02_03,student,I need to call broad peaks for histone mark (H3K27me3) ChIP-seq
macs2,macs2_02,macs2_02_04,polite,Please call broad peaks for histone mark (H3K27me3) ChIP-seq
macs2,macs2_02,macs2_02_05,sysadmin,Use macs2 to call broad peaks for histone mark (H3K27me3) ChIP-seq
macs2,macs2_02,macs2_02_06,goal_oriented,I want to call broad peaks for histone mark (H3K27me3) ChIP-seq
macs2,macs2_02,macs2_02_07,expert,call broad peaks histone mark (H3K27me3) ChIP-seq
macs2,macs2_02,macs2_02_08,detailed,"I have data that I need to process: call broad peaks for histone mark (H3K27me3) ChIP-seq, utilizing multiple CPU threads for speed"
macs2,macs2_02,macs2_02_09,informal,"Hey, can you help me call broad peaks for histone mark (H3K27me3) ChIP-seq?"
macs2,macs2_02,macs2_02_10,alternative,Perform: call broad peaks for histone mark (H3K27me3) ChIP-seq
macs2,macs2_03,macs2_03_01,original,call ATAC-seq peaks using nucleosome-free region model
macs2,macs2_03,macs2_03_02,beginner,How do I call ATAC-seq peaks using nucleosome-free region model?
macs2,macs2_03,macs2_03_03,student,I need to call ATAC-seq peaks using nucleosome-free region model
macs2,macs2_03,macs2_03_04,polite,Please call ATAC-seq peaks using nucleosome-free region model
macs2,macs2_03,macs2_03_05,sysadmin,Use macs2 to call ATAC-seq peaks using nucleosome-free region model
macs2,macs2_03,macs2_03_06,goal_oriented,I want to call ATAC-seq peaks using nucleosome-free region model
macs2,macs2_03,macs2_03_07,expert,call ATAC-seq peaks nucleosome-free region model
macs2,macs2_03,macs2_03_08,detailed,"I have data that I need to process: call ATAC-seq peaks using nucleosome-free region model, utilizing multiple CPU threads for speed"
macs2,macs2_03,macs2_03_09,informal,"Hey, can you help me call ATAC-seq peaks using nucleosome-free region model?"
macs2,macs2_03,macs2_03_10,alternative,Perform: call ATAC-seq peaks using nucleosome-free region model
macs2,macs2_04,macs2_04_01,original,call peaks from paired-end ATAC-seq BAM
macs2,macs2_04,macs2_04_02,beginner,How do I call peaks from paired-end ATAC-seq BAM?
macs2,macs2_04,macs2_04_03,student,I need to call peaks from paired-end ATAC-seq BAM
macs2,macs2_04,macs2_04_04,polite,Please call peaks from paired-end ATAC-seq BAM
macs2,macs2_04,macs2_04_05,sysadmin,Use macs2 to call peaks from paired-end ATAC-seq BAM
macs2,macs2_04,macs2_04_06,goal_oriented,I want to call peaks from paired-end ATAC-seq BAM
macs2,macs2_04,macs2_04_07,expert,call peaks paired-end ATAC-seq BAM
macs2,macs2_04,macs2_04_08,detailed,"I have data that I need to process: call peaks from paired-end ATAC-seq BAM, utilizing multiple CPU threads for speed"
macs2,macs2_04,macs2_04_09,informal,"Hey, can you help me call peaks from paired-end ATAC-seq BAM?"
macs2,macs2_04,macs2_04_10,alternative,Perform: call peaks from paired-end ATAC-seq BAM
macs2,macs2_05,macs2_05_01,original,call peaks without control for ATAC-seq open chromatin
macs2,macs2_05,macs2_05_02,beginner,How do I call peaks without control for ATAC-seq open chromatin?
macs2,macs2_05,macs2_05_03,student,I need to call peaks without control for ATAC-seq open chromatin
macs2,macs2_05,macs2_05_04,polite,Please call peaks without control for ATAC-seq open chromatin
macs2,macs2_05,macs2_05_05,sysadmin,Use macs2 to call peaks without control for ATAC-seq open chromatin
macs2,macs2_05,macs2_05_06,goal_oriented,I want to call peaks without control for ATAC-seq open chromatin
macs2,macs2_05,macs2_05_07,expert,call peaks without control ATAC-seq open chromatin
macs2,macs2_05,macs2_05_08,detailed,"I have data that I need to process: call peaks without control for ATAC-seq open chromatin, utilizing multiple CPU threads for speed"
macs2,macs2_05,macs2_05_09,informal,"Hey, can you help me call peaks without control for ATAC-seq open chromatin?"
macs2,macs2_05,macs2_05_10,alternative,Perform: call peaks without control for ATAC-seq open chromatin
macs2,macs2_06,macs2_06_01,original,call narrow peaks from ChIP-seq data with input control with verbose output
macs2,macs2_06,macs2_06_02,beginner,How do I call narrow peaks from ChIP-seq data with input control with verbose output?
macs2,macs2_06,macs2_06_03,student,I need to call narrow peaks from ChIP-seq data with input control with verbose output
macs2,macs2_06,macs2_06_04,polite,Please call narrow peaks from ChIP-seq data with input control with verbose output
macs2,macs2_06,macs2_06_05,sysadmin,Use macs2 to call narrow peaks from ChIP-seq data with input control with verbose output
macs2,macs2_06,macs2_06_06,goal_oriented,I want to call narrow peaks from ChIP-seq data with input control with verbose output
macs2,macs2_06,macs2_06_07,expert,call narrow peaks ChIP-seq data input control verbose output
macs2,macs2_06,macs2_06_08,detailed,"I have data that I need to process: call narrow peaks from ChIP-seq data with input control with verbose output, utilizing multiple CPU threads for speed"
macs2,macs2_06,macs2_06_09,informal,"Hey, can you help me call narrow peaks from ChIP-seq data with input control with verbose output?"
macs2,macs2_06,macs2_06_10,alternative,"With input control with verbose output, call narrow peaks from ChIP-seq data"
macs2,macs2_07,macs2_07_01,original,call broad peaks for histone mark (H3K27me3) ChIP-seq using multiple threads
macs2,macs2_07,macs2_07_02,beginner,How do I call broad peaks for histone mark (H3K27me3) ChIP-seq using multiple threads?
macs2,macs2_07,macs2_07_03,student,I need to call broad peaks for histone mark (H3K27me3) ChIP-seq using multiple threads
macs2,macs2_07,macs2_07_04,polite,Please call broad peaks for histone mark (H3K27me3) ChIP-seq using multiple threads
macs2,macs2_07,macs2_07_05,sysadmin,Use macs2 to call broad peaks for histone mark (H3K27me3) ChIP-seq using multiple threads
macs2,macs2_07,macs2_07_06,goal_oriented,I want to call broad peaks for histone mark (H3K27me3) ChIP-seq using multiple threads
macs2,macs2_07,macs2_07_07,expert,call broad peaks histone mark (H3K27me3) ChIP-seq multiple threads
macs2,macs2_07,macs2_07_08,detailed,"I have data that I need to process: call broad peaks for histone mark (H3K27me3) ChIP-seq using multiple threads, utilizing multiple CPU threads for speed"
macs2,macs2_07,macs2_07_09,informal,"Hey, can you help me call broad peaks for histone mark (H3K27me3) ChIP-seq using multiple threads?"
macs2,macs2_07,macs2_07_10,alternative,Perform: call broad peaks for histone mark (H3K27me3) ChIP-seq using multiple threads
macs2,macs2_08,macs2_08_01,original,call ATAC-seq peaks using nucleosome-free region model and write output to a file
macs2,macs2_08,macs2_08_02,beginner,How do I call ATAC-seq peaks using nucleosome-free region model and write output to a file?
macs2,macs2_08,macs2_08_03,student,I need to call ATAC-seq peaks using nucleosome-free region model and write output to a file
macs2,macs2_08,macs2_08_04,polite,Please call ATAC-seq peaks using nucleosome-free region model and write output to a file
macs2,macs2_08,macs2_08_05,sysadmin,Use macs2 to call ATAC-seq peaks using nucleosome-free region model and write output to a file
macs2,macs2_08,macs2_08_06,goal_oriented,I want to call ATAC-seq peaks using nucleosome-free region model and write output to a file
macs2,macs2_08,macs2_08_07,expert,call ATAC-seq peaks nucleosome-free region model write output file
macs2,macs2_08,macs2_08_08,detailed,"I have data that I need to process: call ATAC-seq peaks using nucleosome-free region model and write output to a file, utilizing multiple CPU threads for speed, saving the result to a specified output file"
macs2,macs2_08,macs2_08_09,informal,"Hey, can you help me call ATAC-seq peaks using nucleosome-free region model and write output to a file?"
macs2,macs2_08,macs2_08_10,alternative,Write output to a file after call ATAC-seq peaks using nucleosome-free region model
macs2,macs2_09,macs2_09_01,original,call peaks from paired-end ATAC-seq BAM in quiet mode
macs2,macs2_09,macs2_09_02,beginner,How do I call peaks from paired-end ATAC-seq BAM in quiet mode?
macs2,macs2_09,macs2_09_03,student,I need to call peaks from paired-end ATAC-seq BAM in quiet mode
macs2,macs2_09,macs2_09_04,polite,Please call peaks from paired-end ATAC-seq BAM in quiet mode
macs2,macs2_09,macs2_09_05,sysadmin,Use macs2 to call peaks from paired-end ATAC-seq BAM in quiet mode
macs2,macs2_09,macs2_09_06,goal_oriented,I want to call peaks from paired-end ATAC-seq BAM in quiet mode
macs2,macs2_09,macs2_09_07,expert,call peaks paired-end ATAC-seq BAM quiet mode
macs2,macs2_09,macs2_09_08,detailed,"I have data that I need to process: call peaks from paired-end ATAC-seq BAM in quiet mode, utilizing multiple CPU threads for speed"
macs2,macs2_09,macs2_09_09,informal,"Hey, can you help me call peaks from paired-end ATAC-seq BAM in quiet mode?"
macs2,macs2_09,macs2_09_10,alternative,Perform: call peaks from paired-end ATAC-seq BAM in quiet mode
macs2,macs2_10,macs2_10_01,original,call peaks without control for ATAC-seq open chromatin with default parameters
macs2,macs2_10,macs2_10_02,beginner,How do I call peaks without control for ATAC-seq open chromatin with default parameters?
macs2,macs2_10,macs2_10_03,student,I need to call peaks without control for ATAC-seq open chromatin with default parameters
macs2,macs2_10,macs2_10_04,polite,Please call peaks without control for ATAC-seq open chromatin with default parameters
macs2,macs2_10,macs2_10_05,sysadmin,Use macs2 to call peaks without control for ATAC-seq open chromatin with default parameters
macs2,macs2_10,macs2_10_06,goal_oriented,I want to call peaks without control for ATAC-seq open chromatin with default parameters
macs2,macs2_10,macs2_10_07,expert,call peaks without control ATAC-seq open chromatin default parameters
macs2,macs2_10,macs2_10_08,detailed,"I have data that I need to process: call peaks without control for ATAC-seq open chromatin with default parameters, utilizing multiple CPU threads for speed"
macs2,macs2_10,macs2_10_09,informal,"Hey, can you help me call peaks without control for ATAC-seq open chromatin with default parameters?"
macs2,macs2_10,macs2_10_10,alternative,"With default parameters, call peaks without control for ATAC-seq open chromatin"
mafft,mafft_01,mafft_01_01,original,align multiple protein sequences with automatic algorithm selection
mafft,mafft_01,mafft_01_02,beginner,How do I align multiple protein sequences with automatic algorithm selection?
mafft,mafft_01,mafft_01_03,student,I need to align multiple protein sequences with automatic algorithm selection
mafft,mafft_01,mafft_01_04,polite,Please align multiple protein sequences with automatic algorithm selection
mafft,mafft_01,mafft_01_05,sysadmin,Use mafft to align multiple protein sequences with automatic algorithm selection
mafft,mafft_01,mafft_01_06,goal_oriented,I want to align multiple protein sequences with automatic algorithm selection
mafft,mafft_01,mafft_01_07,expert,align multiple protein sequences automatic algorithm selection
mafft,mafft_01,mafft_01_08,detailed,I have data that I need to process: align multiple protein sequences with automatic algorithm selection
mafft,mafft_01,mafft_01_09,informal,"Hey, can you help me align multiple protein sequences with automatic algorithm selection?"
mafft,mafft_01,mafft_01_10,alternative,"With automatic algorithm selection, align multiple protein sequences"
mafft,mafft_02,mafft_02_01,original,highly accurate multiple sequence alignment for fewer than 200 sequences
mafft,mafft_02,mafft_02_02,beginner,How do I highly accurate multiple sequence alignment for fewer than 200 sequences?
mafft,mafft_02,mafft_02_03,student,I need to highly accurate multiple sequence alignment for fewer than 200 sequences
mafft,mafft_02,mafft_02_04,polite,Please highly accurate multiple sequence alignment for fewer than 200 sequences
mafft,mafft_02,mafft_02_05,sysadmin,Use mafft to highly accurate multiple sequence alignment for fewer than 200 sequences
mafft,mafft_02,mafft_02_06,goal_oriented,I want to highly accurate multiple sequence alignment for fewer than 200 sequences
mafft,mafft_02,mafft_02_07,expert,highly accurate multiple sequence alignment fewer than 200 sequences
mafft,mafft_02,mafft_02_08,detailed,I have data that I need to process: highly accurate multiple sequence alignment for fewer than 200 sequences
mafft,mafft_02,mafft_02_09,informal,"Hey, can you help me highly accurate multiple sequence alignment for fewer than 200 sequences?"
mafft,mafft_02,mafft_02_10,alternative,Perform: highly accurate multiple sequence alignment for fewer than 200 sequences
mafft,mafft_03,mafft_03_01,original,align RNA sequences adjusting for strand orientation
mafft,mafft_03,mafft_03_02,beginner,How do I align RNA sequences adjusting for strand orientation?
mafft,mafft_03,mafft_03_03,student,I need to align RNA sequences adjusting for strand orientation
mafft,mafft_03,mafft_03_04,polite,Please align RNA sequences adjusting for strand orientation
mafft,mafft_03,mafft_03_05,sysadmin,Use mafft to align RNA sequences adjusting for strand orientation
mafft,mafft_03,mafft_03_06,goal_oriented,I want to align RNA sequences adjusting for strand orientation
mafft,mafft_03,mafft_03_07,expert,align RNA sequences adjusting strand orientation
mafft,mafft_03,mafft_03_08,detailed,I have data that I need to process: align RNA sequences adjusting for strand orientation
mafft,mafft_03,mafft_03_09,informal,"Hey, can you help me align RNA sequences adjusting for strand orientation?"
mafft,mafft_03,mafft_03_10,alternative,Perform: align RNA sequences adjusting for strand orientation
mafft,mafft_04,mafft_04_01,original,align sequences and output in PHYLIP format for phylogenetic analysis
mafft,mafft_04,mafft_04_02,beginner,How do I align sequences and output in PHYLIP format for phylogenetic analysis?
mafft,mafft_04,mafft_04_03,student,I need to align sequences and output in PHYLIP format for phylogenetic analysis
mafft,mafft_04,mafft_04_04,polite,Please align sequences and output in PHYLIP format for phylogenetic analysis
mafft,mafft_04,mafft_04_05,sysadmin,Use mafft to align sequences and output in PHYLIP format for phylogenetic analysis
mafft,mafft_04,mafft_04_06,goal_oriented,I want to align sequences and output in PHYLIP format for phylogenetic analysis
mafft,mafft_04,mafft_04_07,expert,align sequences output PHYLIP format phylogenetic analysis
mafft,mafft_04,mafft_04_08,detailed,I have data that I need to process: align sequences and output in PHYLIP format for phylogenetic analysis
mafft,mafft_04,mafft_04_09,informal,"Hey, can you help me align sequences and output in PHYLIP format for phylogenetic analysis?"
mafft,mafft_04,mafft_04_10,alternative,Output in PHYLIP format for phylogenetic analysis after align sequences
mafft,mafft_05,mafft_05_01,original,add new sequences to existing alignment
mafft,mafft_05,mafft_05_02,beginner,How do I add new sequences to existing alignment?
mafft,mafft_05,mafft_05_03,student,I need to add new sequences to existing alignment
mafft,mafft_05,mafft_05_04,polite,Please add new sequences to existing alignment
mafft,mafft_05,mafft_05_05,sysadmin,Use mafft to add new sequences to existing alignment
mafft,mafft_05,mafft_05_06,goal_oriented,I want to add new sequences to existing alignment
mafft,mafft_05,mafft_05_07,expert,add new sequences existing alignment
mafft,mafft_05,mafft_05_08,detailed,I have data that I need to process: add new sequences to existing alignment
mafft,mafft_05,mafft_05_09,informal,"Hey, can you help me add new sequences to existing alignment?"
mafft,mafft_05,mafft_05_10,alternative,Output existing alignment by performing: add new sequences
mafft,mafft_06,mafft_06_01,original,align multiple protein sequences with automatic algorithm selection
mafft,mafft_06,mafft_06_02,beginner,How do I align multiple protein sequences with automatic algorithm selection?
mafft,mafft_06,mafft_06_03,student,I need to align multiple protein sequences with automatic algorithm selection
mafft,mafft_06,mafft_06_04,polite,Please align multiple protein sequences with automatic algorithm selection
mafft,mafft_06,mafft_06_05,sysadmin,Use mafft to align multiple protein sequences with automatic algorithm selection
mafft,mafft_06,mafft_06_06,goal_oriented,I want to align multiple protein sequences with automatic algorithm selection
mafft,mafft_06,mafft_06_07,expert,align multiple protein sequences automatic algorithm selection
mafft,mafft_06,mafft_06_08,detailed,I have data that I need to process: align multiple protein sequences with automatic algorithm selection
mafft,mafft_06,mafft_06_09,informal,"Hey, can you help me align multiple protein sequences with automatic algorithm selection?"
mafft,mafft_06,mafft_06_10,alternative,"With automatic algorithm selection, align multiple protein sequences"
mafft,mafft_07,mafft_07_01,original,highly accurate multiple sequence alignment for fewer than 200 sequences
mafft,mafft_07,mafft_07_02,beginner,How do I highly accurate multiple sequence alignment for fewer than 200 sequences?
mafft,mafft_07,mafft_07_03,student,I need to highly accurate multiple sequence alignment for fewer than 200 sequences
mafft,mafft_07,mafft_07_04,polite,Please highly accurate multiple sequence alignment for fewer than 200 sequences
mafft,mafft_07,mafft_07_05,sysadmin,Use mafft to highly accurate multiple sequence alignment for fewer than 200 sequences
mafft,mafft_07,mafft_07_06,goal_oriented,I want to highly accurate multiple sequence alignment for fewer than 200 sequences
mafft,mafft_07,mafft_07_07,expert,highly accurate multiple sequence alignment fewer than 200 sequences
mafft,mafft_07,mafft_07_08,detailed,I have data that I need to process: highly accurate multiple sequence alignment for fewer than 200 sequences
mafft,mafft_07,mafft_07_09,informal,"Hey, can you help me highly accurate multiple sequence alignment for fewer than 200 sequences?"
mafft,mafft_07,mafft_07_10,alternative,Perform: highly accurate multiple sequence alignment for fewer than 200 sequences
mafft,mafft_08,mafft_08_01,original,align RNA sequences adjusting for strand orientation
mafft,mafft_08,mafft_08_02,beginner,How do I align RNA sequences adjusting for strand orientation?
mafft,mafft_08,mafft_08_03,student,I need to align RNA sequences adjusting for strand orientation
mafft,mafft_08,mafft_08_04,polite,Please align RNA sequences adjusting for strand orientation
mafft,mafft_08,mafft_08_05,sysadmin,Use mafft to align RNA sequences adjusting for strand orientation
mafft,mafft_08,mafft_08_06,goal_oriented,I want to align RNA sequences adjusting for strand orientation
mafft,mafft_08,mafft_08_07,expert,align RNA sequences adjusting strand orientation
mafft,mafft_08,mafft_08_08,detailed,I have data that I need to process: align RNA sequences adjusting for strand orientation
mafft,mafft_08,mafft_08_09,informal,"Hey, can you help me align RNA sequences adjusting for strand orientation?"
mafft,mafft_08,mafft_08_10,alternative,Perform: align RNA sequences adjusting for strand orientation
mafft,mafft_09,mafft_09_01,original,align sequences and output in PHYLIP format for phylogenetic analysis
mafft,mafft_09,mafft_09_02,beginner,How do I align sequences and output in PHYLIP format for phylogenetic analysis?
mafft,mafft_09,mafft_09_03,student,I need to align sequences and output in PHYLIP format for phylogenetic analysis
mafft,mafft_09,mafft_09_04,polite,Please align sequences and output in PHYLIP format for phylogenetic analysis
mafft,mafft_09,mafft_09_05,sysadmin,Use mafft to align sequences and output in PHYLIP format for phylogenetic analysis
mafft,mafft_09,mafft_09_06,goal_oriented,I want to align sequences and output in PHYLIP format for phylogenetic analysis
mafft,mafft_09,mafft_09_07,expert,align sequences output PHYLIP format phylogenetic analysis
mafft,mafft_09,mafft_09_08,detailed,I have data that I need to process: align sequences and output in PHYLIP format for phylogenetic analysis
mafft,mafft_09,mafft_09_09,informal,"Hey, can you help me align sequences and output in PHYLIP format for phylogenetic analysis?"
mafft,mafft_09,mafft_09_10,alternative,Output in PHYLIP format for phylogenetic analysis after align sequences
mafft,mafft_10,mafft_10_01,original,add new sequences to existing alignment with default parameters
mafft,mafft_10,mafft_10_02,beginner,How do I add new sequences to existing alignment with default parameters?
mafft,mafft_10,mafft_10_03,student,I need to add new sequences to existing alignment with default parameters
mafft,mafft_10,mafft_10_04,polite,Please add new sequences to existing alignment with default parameters
mafft,mafft_10,mafft_10_05,sysadmin,Use mafft to add new sequences to existing alignment with default parameters
mafft,mafft_10,mafft_10_06,goal_oriented,I want to add new sequences to existing alignment with default parameters
mafft,mafft_10,mafft_10_07,expert,add new sequences existing alignment default parameters
mafft,mafft_10,mafft_10_08,detailed,I have data that I need to process: add new sequences to existing alignment with default parameters
mafft,mafft_10,mafft_10_09,informal,"Hey, can you help me add new sequences to existing alignment with default parameters?"
mafft,mafft_10,mafft_10_10,alternative,"With default parameters, add new sequences to existing alignment"
mash,mash_01,mash_01_01,original,sketch a collection of genome FASTA files into a single database
mash,mash_01,mash_01_02,beginner,How do I sketch a collection of genome FASTA files into a single database?
mash,mash_01,mash_01_03,student,I need to sketch a collection of genome FASTA files into a single database
mash,mash_01,mash_01_04,polite,Please sketch a collection of genome FASTA files into a single database
mash,mash_01,mash_01_05,sysadmin,Use mash to sketch a collection of genome FASTA files into a single database
mash,mash_01,mash_01_06,goal_oriented,I want to sketch a collection of genome FASTA files into a single database
mash,mash_01,mash_01_07,expert,sketch collection of genome FASTA files single database
mash,mash_01,mash_01_08,detailed,"I have data that I need to process: sketch a collection of genome FASTA files into a single database, saving the result to a specified output file"
mash,mash_01,mash_01_09,informal,"Hey, can you help me sketch a collection of genome FASTA files into a single database?"
mash,mash_01,mash_01_10,alternative,Perform: sketch a collection of genome FASTA files into a single database
mash,mash_02,mash_02_01,original,compute pairwise distances between two genome sketches
mash,mash_02,mash_02_02,beginner,How do I compute pairwise distances between two genome sketches?
mash,mash_02,mash_02_03,student,I need to compute pairwise distances between two genome sketches
mash,mash_02,mash_02_04,polite,Please compute pairwise distances between two genome sketches
mash,mash_02,mash_02_05,sysadmin,Use mash to compute pairwise distances between two genome sketches
mash,mash_02,mash_02_06,goal_oriented,I want to compute pairwise distances between two genome sketches
mash,mash_02,mash_02_07,expert,compute pairwise distances between two genome sketches
mash,mash_02,mash_02_08,detailed,I have data that I need to process: compute pairwise distances between two genome sketches
mash,mash_02,mash_02_09,informal,"Hey, can you help me compute pairwise distances between two genome sketches?"
mash,mash_02,mash_02_10,alternative,Perform: compute pairwise distances between two genome sketches
mash,mash_03,mash_03_01,original,query all genomes in a database against a query genome
mash,mash_03,mash_03_02,beginner,How do I query all genomes in a database against a query genome?
mash,mash_03,mash_03_03,student,I need to query all genomes in a database against a query genome
mash,mash_03,mash_03_04,polite,Please query all genomes in a database against a query genome
mash,mash_03,mash_03_05,sysadmin,Use mash to query all genomes in a database against a query genome
mash,mash_03,mash_03_06,goal_oriented,I want to query all genomes in a database against a query genome
mash,mash_03,mash_03_07,expert,query all genomes database against query genome
mash,mash_03,mash_03_08,detailed,"I have data that I need to process: query all genomes in a database against a query genome, utilizing multiple CPU threads for speed"
mash,mash_03,mash_03_09,informal,"Hey, can you help me query all genomes in a database against a query genome?"
mash,mash_03,mash_03_10,alternative,Perform: query all genomes in a database against a query genome
mash,mash_04,mash_04_01,original,sketch raw sequencing reads with error filtering
mash,mash_04,mash_04_02,beginner,How do I sketch raw sequencing reads with error filtering?
mash,mash_04,mash_04_03,student,I need to sketch raw sequencing reads with error filtering
mash,mash_04,mash_04_04,polite,Please sketch raw sequencing reads with error filtering
mash,mash_04,mash_04_05,sysadmin,Use mash to sketch raw sequencing reads with error filtering
mash,mash_04,mash_04_06,goal_oriented,I want to sketch raw sequencing reads with error filtering
mash,mash_04,mash_04_07,expert,sketch raw sequencing reads error filtering
mash,mash_04,mash_04_08,detailed,"I have data that I need to process: sketch raw sequencing reads with error filtering, saving the result to a specified output file"
mash,mash_04,mash_04_09,informal,"Hey, can you help me sketch raw sequencing reads with error filtering?"
mash,mash_04,mash_04_10,alternative,"With error filtering, sketch raw sequencing reads"
mash,mash_05,mash_05_01,original,screen a metagenome for known reference genomes
mash,mash_05,mash_05_02,beginner,How do I screen a metagenome for known reference genomes?
mash,mash_05,mash_05_03,student,I need to screen a metagenome for known reference genomes
mash,mash_05,mash_05_04,polite,Please screen a metagenome for known reference genomes
mash,mash_05,mash_05_05,sysadmin,Use mash to screen a metagenome for known reference genomes
mash,mash_05,mash_05_06,goal_oriented,I want to screen a metagenome for known reference genomes
mash,mash_05,mash_05_07,expert,screen metagenome known reference genomes
mash,mash_05,mash_05_08,detailed,"I have data that I need to process: screen a metagenome for known reference genomes, utilizing multiple CPU threads for speed"
mash,mash_05,mash_05_09,informal,"Hey, can you help me screen a metagenome for known reference genomes?"
mash,mash_05,mash_05_10,alternative,Perform: screen a metagenome for known reference genomes
mash,mash_06,mash_06_01,original,compute all-vs-all distance triangle for genome clustering
mash,mash_06,mash_06_02,beginner,How do I compute all-vs-all distance triangle for genome clustering?
mash,mash_06,mash_06_03,student,I need to compute all-vs-all distance triangle for genome clustering
mash,mash_06,mash_06_04,polite,Please compute all-vs-all distance triangle for genome clustering
mash,mash_06,mash_06_05,sysadmin,Use mash to compute all-vs-all distance triangle for genome clustering
mash,mash_06,mash_06_06,goal_oriented,I want to compute all-vs-all distance triangle for genome clustering
mash,mash_06,mash_06_07,expert,compute all-vs-all distance triangle genome clustering
mash,mash_06,mash_06_08,detailed,"I have data that I need to process: compute all-vs-all distance triangle for genome clustering, utilizing multiple CPU threads for speed"
mash,mash_06,mash_06_09,informal,"Hey, can you help me compute all-vs-all distance triangle for genome clustering?"
mash,mash_06,mash_06_10,alternative,Perform: compute all-vs-all distance triangle for genome clustering
mash,mash_07,mash_07_01,original,sketch a collection of genome FASTA files into a single database using multiple threads
mash,mash_07,mash_07_02,beginner,How do I sketch a collection of genome FASTA files into a single database using multiple threads?
mash,mash_07,mash_07_03,student,I need to sketch a collection of genome FASTA files into a single database using multiple threads
mash,mash_07,mash_07_04,polite,Please sketch a collection of genome FASTA files into a single database using multiple threads
mash,mash_07,mash_07_05,sysadmin,Use mash to sketch a collection of genome FASTA files into a single database using multiple threads
mash,mash_07,mash_07_06,goal_oriented,I want to sketch a collection of genome FASTA files into a single database using multiple threads
mash,mash_07,mash_07_07,expert,sketch collection of genome FASTA files single database multiple threads
mash,mash_07,mash_07_08,detailed,"I have data that I need to process: sketch a collection of genome FASTA files into a single database using multiple threads, utilizing multiple CPU threads for speed, saving the result to a specified output file"
mash,mash_07,mash_07_09,informal,"Hey, can you help me sketch a collection of genome FASTA files into a single database using multiple threads?"
mash,mash_07,mash_07_10,alternative,Perform: sketch a collection of genome FASTA files into a single database using multiple threads
mash,mash_08,mash_08_01,original,compute pairwise distances between two genome sketches and write output to a file
mash,mash_08,mash_08_02,beginner,How do I compute pairwise distances between two genome sketches and write output to a file?
mash,mash_08,mash_08_03,student,I need to compute pairwise distances between two genome sketches and write output to a file
mash,mash_08,mash_08_04,polite,Please compute pairwise distances between two genome sketches and write output to a file
mash,mash_08,mash_08_05,sysadmin,Use mash to compute pairwise distances between two genome sketches and write output to a file
mash,mash_08,mash_08_06,goal_oriented,I want to compute pairwise distances between two genome sketches and write output to a file
mash,mash_08,mash_08_07,expert,compute pairwise distances between two genome sketches write output file
mash,mash_08,mash_08_08,detailed,"I have data that I need to process: compute pairwise distances between two genome sketches and write output to a file, saving the result to a specified output file"
mash,mash_08,mash_08_09,informal,"Hey, can you help me compute pairwise distances between two genome sketches and write output to a file?"
mash,mash_08,mash_08_10,alternative,Write output to a file after compute pairwise distances between two genome sketches
mash,mash_09,mash_09_01,original,query all genomes in a database against a query genome
mash,mash_09,mash_09_02,beginner,How do I query all genomes in a database against a query genome?
mash,mash_09,mash_09_03,student,I need to query all genomes in a database against a query genome
mash,mash_09,mash_09_04,polite,Please query all genomes in a database against a query genome
mash,mash_09,mash_09_05,sysadmin,Use mash to query all genomes in a database against a query genome
mash,mash_09,mash_09_06,goal_oriented,I want to query all genomes in a database against a query genome
mash,mash_09,mash_09_07,expert,query all genomes database against query genome
mash,mash_09,mash_09_08,detailed,"I have data that I need to process: query all genomes in a database against a query genome, utilizing multiple CPU threads for speed"
mash,mash_09,mash_09_09,informal,"Hey, can you help me query all genomes in a database against a query genome?"
mash,mash_09,mash_09_10,alternative,Perform: query all genomes in a database against a query genome
mash,mash_10,mash_10_01,original,sketch raw sequencing reads with error filtering with default parameters
mash,mash_10,mash_10_02,beginner,How do I sketch raw sequencing reads with error filtering with default parameters?
mash,mash_10,mash_10_03,student,I need to sketch raw sequencing reads with error filtering with default parameters
mash,mash_10,mash_10_04,polite,Please sketch raw sequencing reads with error filtering with default parameters
mash,mash_10,mash_10_05,sysadmin,Use mash to sketch raw sequencing reads with error filtering with default parameters
mash,mash_10,mash_10_06,goal_oriented,I want to sketch raw sequencing reads with error filtering with default parameters
mash,mash_10,mash_10_07,expert,sketch raw sequencing reads error filtering default parameters
mash,mash_10,mash_10_08,detailed,"I have data that I need to process: sketch raw sequencing reads with error filtering with default parameters, saving the result to a specified output file"
mash,mash_10,mash_10_09,informal,"Hey, can you help me sketch raw sequencing reads with error filtering with default parameters?"
mash,mash_10,mash_10_10,alternative,"With error filtering with default parameters, sketch raw sequencing reads"
medaka,medaka_01,medaka_01_01,original,polish an ONT assembly with Medaka (all-in-one pipeline)
medaka,medaka_01,medaka_01_02,beginner,How do I polish an ONT assembly with Medaka (all-in-one pipeline)?
medaka,medaka_01,medaka_01_03,student,I need to polish an ONT assembly with Medaka (all-in-one pipeline)
medaka,medaka_01,medaka_01_04,polite,Please polish an ONT assembly with Medaka (all-in-one pipeline)
medaka,medaka_01,medaka_01_05,sysadmin,Use medaka to polish an ONT assembly with Medaka (all-in-one pipeline)
medaka,medaka_01,medaka_01_06,goal_oriented,I want to polish an ONT assembly with Medaka (all-in-one pipeline)
medaka,medaka_01,medaka_01_07,expert,polish ONT assembly Medaka (all-in-one pipeline)
medaka,medaka_01,medaka_01_08,detailed,"I have data that I need to process: polish an ONT assembly with Medaka (all-in-one pipeline), utilizing multiple CPU threads for speed, saving the result to a specified output file"
medaka,medaka_01,medaka_01_09,informal,"Hey, can you help me polish an ONT assembly with Medaka (all-in-one pipeline)?"
medaka,medaka_01,medaka_01_10,alternative,"With Medaka (all-in-one pipeline), polish an ONT assembly"
medaka,medaka_02,medaka_02_01,original,call variants from ONT reads (haploid)
medaka,medaka_02,medaka_02_02,beginner,How do I call variants from ONT reads (haploid)?
medaka,medaka_02,medaka_02_03,student,I need to call variants from ONT reads (haploid)
medaka,medaka_02,medaka_02_04,polite,Please call variants from ONT reads (haploid)
medaka,medaka_02,medaka_02_05,sysadmin,Use medaka to call variants from ONT reads (haploid)
medaka,medaka_02,medaka_02_06,goal_oriented,I want to call variants from ONT reads (haploid)
medaka,medaka_02,medaka_02_07,expert,call variants ONT reads (haploid)
medaka,medaka_02,medaka_02_08,detailed,"I have data that I need to process: call variants from ONT reads (haploid), utilizing multiple CPU threads for speed, saving the result to a specified output file"
medaka,medaka_02,medaka_02_09,informal,"Hey, can you help me call variants from ONT reads (haploid)?"
medaka,medaka_02,medaka_02_10,alternative,Perform: call variants from ONT reads (haploid)
medaka,medaka_03,medaka_03_01,original,list available Medaka models
medaka,medaka_03,medaka_03_02,beginner,How do I list available Medaka models?
medaka,medaka_03,medaka_03_03,student,I need to list available Medaka models
medaka,medaka_03,medaka_03_04,polite,Please list available Medaka models
medaka,medaka_03,medaka_03_05,sysadmin,Use medaka to list available Medaka models
medaka,medaka_03,medaka_03_06,goal_oriented,I want to list available Medaka models
medaka,medaka_03,medaka_03_07,expert,list available Medaka models
medaka,medaka_03,medaka_03_08,detailed,I have data that I need to process: list available Medaka models
medaka,medaka_03,medaka_03_09,informal,"Hey, can you help me list available Medaka models?"
medaka,medaka_03,medaka_03_10,alternative,Perform: list available Medaka models
medaka,medaka_04,medaka_04_01,original,run Medaka consensus with GPU acceleration
medaka,medaka_04,medaka_04_02,beginner,How do I run Medaka consensus with GPU acceleration?
medaka,medaka_04,medaka_04_03,student,I need to run Medaka consensus with GPU acceleration
medaka,medaka_04,medaka_04_04,polite,Please run Medaka consensus with GPU acceleration
medaka,medaka_04,medaka_04_05,sysadmin,Use medaka to run Medaka consensus with GPU acceleration
medaka,medaka_04,medaka_04_06,goal_oriented,I want to run Medaka consensus with GPU acceleration
medaka,medaka_04,medaka_04_07,expert,run Medaka consensus GPU acceleration
medaka,medaka_04,medaka_04_08,detailed,"I have data that I need to process: run Medaka consensus with GPU acceleration, utilizing multiple CPU threads for speed, saving the result to a specified output file"
medaka,medaka_04,medaka_04_09,informal,"Hey, can you help me run Medaka consensus with GPU acceleration?"
medaka,medaka_04,medaka_04_10,alternative,"With GPU acceleration, run Medaka consensus"
medaka,medaka_05,medaka_05_01,original,polish an ONT assembly with Medaka (all-in-one pipeline) with default parameters
medaka,medaka_05,medaka_05_02,beginner,How do I polish an ONT assembly with Medaka (all-in-one pipeline) with default parameters?
medaka,medaka_05,medaka_05_03,student,I need to polish an ONT assembly with Medaka (all-in-one pipeline) with default parameters
medaka,medaka_05,medaka_05_04,polite,Please polish an ONT assembly with Medaka (all-in-one pipeline) with default parameters
medaka,medaka_05,medaka_05_05,sysadmin,Use medaka to polish an ONT assembly with Medaka (all-in-one pipeline) with default parameters
medaka,medaka_05,medaka_05_06,goal_oriented,I want to polish an ONT assembly with Medaka (all-in-one pipeline) with default parameters
medaka,medaka_05,medaka_05_07,expert,polish ONT assembly Medaka (all-in-one pipeline) default parameters
medaka,medaka_05,medaka_05_08,detailed,"I have data that I need to process: polish an ONT assembly with Medaka (all-in-one pipeline) with default parameters, utilizing multiple CPU threads for speed, saving the result to a specified output file"
medaka,medaka_05,medaka_05_09,informal,"Hey, can you help me polish an ONT assembly with Medaka (all-in-one pipeline) with default parameters?"
medaka,medaka_05,medaka_05_10,alternative,"With Medaka (all-in-one pipeline) with default parameters, polish an ONT assembly"
medaka,medaka_06,medaka_06_01,original,call variants from ONT reads (haploid) with verbose output
medaka,medaka_06,medaka_06_02,beginner,How do I call variants from ONT reads (haploid) with verbose output?
medaka,medaka_06,medaka_06_03,student,I need to call variants from ONT reads (haploid) with verbose output
medaka,medaka_06,medaka_06_04,polite,Please call variants from ONT reads (haploid) with verbose output
medaka,medaka_06,medaka_06_05,sysadmin,Use medaka to call variants from ONT reads (haploid) with verbose output
medaka,medaka_06,medaka_06_06,goal_oriented,I want to call variants from ONT reads (haploid) with verbose output
medaka,medaka_06,medaka_06_07,expert,call variants ONT reads (haploid) verbose output
medaka,medaka_06,medaka_06_08,detailed,"I have data that I need to process: call variants from ONT reads (haploid) with verbose output, utilizing multiple CPU threads for speed, saving the result to a specified output file"
medaka,medaka_06,medaka_06_09,informal,"Hey, can you help me call variants from ONT reads (haploid) with verbose output?"
medaka,medaka_06,medaka_06_10,alternative,"With verbose output, call variants from ONT reads (haploid)"
medaka,medaka_07,medaka_07_01,original,list available Medaka models using multiple threads
medaka,medaka_07,medaka_07_02,beginner,How do I list available Medaka models using multiple threads?
medaka,medaka_07,medaka_07_03,student,I need to list available Medaka models using multiple threads
medaka,medaka_07,medaka_07_04,polite,Please list available Medaka models using multiple threads
medaka,medaka_07,medaka_07_05,sysadmin,Use medaka to list available Medaka models using multiple threads
medaka,medaka_07,medaka_07_06,goal_oriented,I want to list available Medaka models using multiple threads
medaka,medaka_07,medaka_07_07,expert,list available Medaka models multiple threads
medaka,medaka_07,medaka_07_08,detailed,"I have data that I need to process: list available Medaka models using multiple threads, utilizing multiple CPU threads for speed"
medaka,medaka_07,medaka_07_09,informal,"Hey, can you help me list available Medaka models using multiple threads?"
medaka,medaka_07,medaka_07_10,alternative,Perform: list available Medaka models using multiple threads
medaka,medaka_08,medaka_08_01,original,run Medaka consensus with GPU acceleration and write output to a file
medaka,medaka_08,medaka_08_02,beginner,How do I run Medaka consensus with GPU acceleration and write output to a file?
medaka,medaka_08,medaka_08_03,student,I need to run Medaka consensus with GPU acceleration and write output to a file
medaka,medaka_08,medaka_08_04,polite,Please run Medaka consensus with GPU acceleration and write output to a file
medaka,medaka_08,medaka_08_05,sysadmin,Use medaka to run Medaka consensus with GPU acceleration and write output to a file
medaka,medaka_08,medaka_08_06,goal_oriented,I want to run Medaka consensus with GPU acceleration and write output to a file
medaka,medaka_08,medaka_08_07,expert,run Medaka consensus GPU acceleration write output file
medaka,medaka_08,medaka_08_08,detailed,"I have data that I need to process: run Medaka consensus with GPU acceleration and write output to a file, utilizing multiple CPU threads for speed, saving the result to a specified output file"
medaka,medaka_08,medaka_08_09,informal,"Hey, can you help me run Medaka consensus with GPU acceleration and write output to a file?"
medaka,medaka_08,medaka_08_10,alternative,Write output to a file after run Medaka consensus with GPU acceleration
medaka,medaka_09,medaka_09_01,original,polish an ONT assembly with Medaka (all-in-one pipeline) in quiet mode
medaka,medaka_09,medaka_09_02,beginner,How do I polish an ONT assembly with Medaka (all-in-one pipeline) in quiet mode?
medaka,medaka_09,medaka_09_03,student,I need to polish an ONT assembly with Medaka (all-in-one pipeline) in quiet mode
medaka,medaka_09,medaka_09_04,polite,Please polish an ONT assembly with Medaka (all-in-one pipeline) in quiet mode
medaka,medaka_09,medaka_09_05,sysadmin,Use medaka to polish an ONT assembly with Medaka (all-in-one pipeline) in quiet mode
medaka,medaka_09,medaka_09_06,goal_oriented,I want to polish an ONT assembly with Medaka (all-in-one pipeline) in quiet mode
medaka,medaka_09,medaka_09_07,expert,polish ONT assembly Medaka (all-in-one pipeline) quiet mode
medaka,medaka_09,medaka_09_08,detailed,"I have data that I need to process: polish an ONT assembly with Medaka (all-in-one pipeline) in quiet mode, utilizing multiple CPU threads for speed, saving the result to a specified output file"
medaka,medaka_09,medaka_09_09,informal,"Hey, can you help me polish an ONT assembly with Medaka (all-in-one pipeline) in quiet mode?"
medaka,medaka_09,medaka_09_10,alternative,"With Medaka (all-in-one pipeline) in quiet mode, polish an ONT assembly"
medaka,medaka_10,medaka_10_01,original,call variants from ONT reads (haploid) with default parameters
medaka,medaka_10,medaka_10_02,beginner,How do I call variants from ONT reads (haploid) with default parameters?
medaka,medaka_10,medaka_10_03,student,I need to call variants from ONT reads (haploid) with default parameters
medaka,medaka_10,medaka_10_04,polite,Please call variants from ONT reads (haploid) with default parameters
medaka,medaka_10,medaka_10_05,sysadmin,Use medaka to call variants from ONT reads (haploid) with default parameters
medaka,medaka_10,medaka_10_06,goal_oriented,I want to call variants from ONT reads (haploid) with default parameters
medaka,medaka_10,medaka_10_07,expert,call variants ONT reads (haploid) default parameters
medaka,medaka_10,medaka_10_08,detailed,"I have data that I need to process: call variants from ONT reads (haploid) with default parameters, utilizing multiple CPU threads for speed, saving the result to a specified output file"
medaka,medaka_10,medaka_10_09,informal,"Hey, can you help me call variants from ONT reads (haploid) with default parameters?"
medaka,medaka_10,medaka_10_10,alternative,"With default parameters, call variants from ONT reads (haploid)"
megahit,megahit_01,megahit_01_01,original,assemble a metagenome from paired-end reads
megahit,megahit_01,megahit_01_02,beginner,How do I assemble a metagenome from paired-end reads?
megahit,megahit_01,megahit_01_03,student,I need to assemble a metagenome from paired-end reads
megahit,megahit_01,megahit_01_04,polite,Please assemble a metagenome from paired-end reads
megahit,megahit_01,megahit_01_05,sysadmin,Use megahit to assemble a metagenome from paired-end reads
megahit,megahit_01,megahit_01_06,goal_oriented,I want to assemble a metagenome from paired-end reads
megahit,megahit_01,megahit_01_07,expert,assemble metagenome paired-end reads
megahit,megahit_01,megahit_01_08,detailed,"I have data that I need to process: assemble a metagenome from paired-end reads, saving the result to a specified output file"
megahit,megahit_01,megahit_01_09,informal,"Hey, can you help me assemble a metagenome from paired-end reads?"
megahit,megahit_01,megahit_01_10,alternative,Perform: assemble a metagenome from paired-end reads
megahit,megahit_02,megahit_02_01,original,assemble a large complex metagenome with meta-large preset
megahit,megahit_02,megahit_02_02,beginner,How do I assemble a large complex metagenome with meta-large preset?
megahit,megahit_02,megahit_02_03,student,I need to assemble a large complex metagenome with meta-large preset
megahit,megahit_02,megahit_02_04,polite,Please assemble a large complex metagenome with meta-large preset
megahit,megahit_02,megahit_02_05,sysadmin,Use megahit to assemble a large complex metagenome with meta-large preset
megahit,megahit_02,megahit_02_06,goal_oriented,I want to assemble a large complex metagenome with meta-large preset
megahit,megahit_02,megahit_02_07,expert,assemble large complex metagenome meta-large preset
megahit,megahit_02,megahit_02_08,detailed,"I have data that I need to process: assemble a large complex metagenome with meta-large preset, saving the result to a specified output file"
megahit,megahit_02,megahit_02_09,informal,"Hey, can you help me assemble a large complex metagenome with meta-large preset?"
megahit,megahit_02,megahit_02_10,alternative,"With meta-large preset, assemble a large complex metagenome"
megahit,megahit_03,megahit_03_01,original,assemble metagenome from multiple samples combined
megahit,megahit_03,megahit_03_02,beginner,How do I assemble metagenome from multiple samples combined?
megahit,megahit_03,megahit_03_03,student,I need to assemble metagenome from multiple samples combined
megahit,megahit_03,megahit_03_04,polite,Please assemble metagenome from multiple samples combined
megahit,megahit_03,megahit_03_05,sysadmin,Use megahit to assemble metagenome from multiple samples combined
megahit,megahit_03,megahit_03_06,goal_oriented,I want to assemble metagenome from multiple samples combined
megahit,megahit_03,megahit_03_07,expert,assemble metagenome multiple samples combined
megahit,megahit_03,megahit_03_08,detailed,"I have data that I need to process: assemble metagenome from multiple samples combined, saving the result to a specified output file"
megahit,megahit_03,megahit_03_09,informal,"Hey, can you help me assemble metagenome from multiple samples combined?"
megahit,megahit_03,megahit_03_10,alternative,Perform: assemble metagenome from multiple samples combined
megahit,megahit_04,megahit_04_01,original,assemble with custom k-mer range for specific data type
megahit,megahit_04,megahit_04_02,beginner,How do I assemble with custom k-mer range for specific data type?
megahit,megahit_04,megahit_04_03,student,I need to assemble with custom k-mer range for specific data type
megahit,megahit_04,megahit_04_04,polite,Please assemble with custom k-mer range for specific data type
megahit,megahit_04,megahit_04_05,sysadmin,Use megahit to assemble with custom k-mer range for specific data type
megahit,megahit_04,megahit_04_06,goal_oriented,I want to assemble with custom k-mer range for specific data type
megahit,megahit_04,megahit_04_07,expert,assemble custom k-mer range specific data type
megahit,megahit_04,megahit_04_08,detailed,"I have data that I need to process: assemble with custom k-mer range for specific data type, saving the result to a specified output file"
megahit,megahit_04,megahit_04_09,informal,"Hey, can you help me assemble with custom k-mer range for specific data type?"
megahit,megahit_04,megahit_04_10,alternative,"With custom k-mer range for specific data type, assemble"
megahit,megahit_05,megahit_05_01,original,assemble a metagenome from paired-end reads with default parameters
megahit,megahit_05,megahit_05_02,beginner,How do I assemble a metagenome from paired-end reads with default parameters?
megahit,megahit_05,megahit_05_03,student,I need to assemble a metagenome from paired-end reads with default parameters
megahit,megahit_05,megahit_05_04,polite,Please assemble a metagenome from paired-end reads with default parameters
megahit,megahit_05,megahit_05_05,sysadmin,Use megahit to assemble a metagenome from paired-end reads with default parameters
megahit,megahit_05,megahit_05_06,goal_oriented,I want to assemble a metagenome from paired-end reads with default parameters
megahit,megahit_05,megahit_05_07,expert,assemble metagenome paired-end reads default parameters
megahit,megahit_05,megahit_05_08,detailed,"I have data that I need to process: assemble a metagenome from paired-end reads with default parameters, saving the result to a specified output file"
megahit,megahit_05,megahit_05_09,informal,"Hey, can you help me assemble a metagenome from paired-end reads with default parameters?"
megahit,megahit_05,megahit_05_10,alternative,"With default parameters, assemble a metagenome from paired-end reads"
megahit,megahit_06,megahit_06_01,original,assemble a large complex metagenome with meta-large preset with verbose output
megahit,megahit_06,megahit_06_02,beginner,How do I assemble a large complex metagenome with meta-large preset with verbose output?
megahit,megahit_06,megahit_06_03,student,I need to assemble a large complex metagenome with meta-large preset with verbose output
megahit,megahit_06,megahit_06_04,polite,Please assemble a large complex metagenome with meta-large preset with verbose output
megahit,megahit_06,megahit_06_05,sysadmin,Use megahit to assemble a large complex metagenome with meta-large preset with verbose output
megahit,megahit_06,megahit_06_06,goal_oriented,I want to assemble a large complex metagenome with meta-large preset with verbose output
megahit,megahit_06,megahit_06_07,expert,assemble large complex metagenome meta-large preset verbose output
megahit,megahit_06,megahit_06_08,detailed,"I have data that I need to process: assemble a large complex metagenome with meta-large preset with verbose output, saving the result to a specified output file"
megahit,megahit_06,megahit_06_09,informal,"Hey, can you help me assemble a large complex metagenome with meta-large preset with verbose output?"
megahit,megahit_06,megahit_06_10,alternative,"With meta-large preset with verbose output, assemble a large complex metagenome"
megahit,megahit_07,megahit_07_01,original,assemble metagenome from multiple samples combined using multiple threads
megahit,megahit_07,megahit_07_02,beginner,How do I assemble metagenome from multiple samples combined using multiple threads?
megahit,megahit_07,megahit_07_03,student,I need to assemble metagenome from multiple samples combined using multiple threads
megahit,megahit_07,megahit_07_04,polite,Please assemble metagenome from multiple samples combined using multiple threads
megahit,megahit_07,megahit_07_05,sysadmin,Use megahit to assemble metagenome from multiple samples combined using multiple threads
megahit,megahit_07,megahit_07_06,goal_oriented,I want to assemble metagenome from multiple samples combined using multiple threads
megahit,megahit_07,megahit_07_07,expert,assemble metagenome multiple samples combined multiple threads
megahit,megahit_07,megahit_07_08,detailed,"I have data that I need to process: assemble metagenome from multiple samples combined using multiple threads, utilizing multiple CPU threads for speed, saving the result to a specified output file"
megahit,megahit_07,megahit_07_09,informal,"Hey, can you help me assemble metagenome from multiple samples combined using multiple threads?"
megahit,megahit_07,megahit_07_10,alternative,Perform: assemble metagenome from multiple samples combined using multiple threads
megahit,megahit_08,megahit_08_01,original,assemble with custom k-mer range for specific data type and write output to a file
megahit,megahit_08,megahit_08_02,beginner,How do I assemble with custom k-mer range for specific data type and write output to a file?
megahit,megahit_08,megahit_08_03,student,I need to assemble with custom k-mer range for specific data type and write output to a file
megahit,megahit_08,megahit_08_04,polite,Please assemble with custom k-mer range for specific data type and write output to a file
megahit,megahit_08,megahit_08_05,sysadmin,Use megahit to assemble with custom k-mer range for specific data type and write output to a file
megahit,megahit_08,megahit_08_06,goal_oriented,I want to assemble with custom k-mer range for specific data type and write output to a file
megahit,megahit_08,megahit_08_07,expert,assemble custom k-mer range specific data type write output file
megahit,megahit_08,megahit_08_08,detailed,"I have data that I need to process: assemble with custom k-mer range for specific data type and write output to a file, saving the result to a specified output file"
megahit,megahit_08,megahit_08_09,informal,"Hey, can you help me assemble with custom k-mer range for specific data type and write output to a file?"
megahit,megahit_08,megahit_08_10,alternative,Write output to a file after assemble with custom k-mer range for specific data type
megahit,megahit_09,megahit_09_01,original,assemble a metagenome from paired-end reads in quiet mode
megahit,megahit_09,megahit_09_02,beginner,How do I assemble a metagenome from paired-end reads in quiet mode?
megahit,megahit_09,megahit_09_03,student,I need to assemble a metagenome from paired-end reads in quiet mode
megahit,megahit_09,megahit_09_04,polite,Please assemble a metagenome from paired-end reads in quiet mode
megahit,megahit_09,megahit_09_05,sysadmin,Use megahit to assemble a metagenome from paired-end reads in quiet mode
megahit,megahit_09,megahit_09_06,goal_oriented,I want to assemble a metagenome from paired-end reads in quiet mode
megahit,megahit_09,megahit_09_07,expert,assemble metagenome paired-end reads quiet mode
megahit,megahit_09,megahit_09_08,detailed,"I have data that I need to process: assemble a metagenome from paired-end reads in quiet mode, saving the result to a specified output file"
megahit,megahit_09,megahit_09_09,informal,"Hey, can you help me assemble a metagenome from paired-end reads in quiet mode?"
megahit,megahit_09,megahit_09_10,alternative,Perform: assemble a metagenome from paired-end reads in quiet mode
megahit,megahit_10,megahit_10_01,original,assemble a large complex metagenome with meta-large preset with default parameters
megahit,megahit_10,megahit_10_02,beginner,How do I assemble a large complex metagenome with meta-large preset with default parameters?
megahit,megahit_10,megahit_10_03,student,I need to assemble a large complex metagenome with meta-large preset with default parameters
megahit,megahit_10,megahit_10_04,polite,Please assemble a large complex metagenome with meta-large preset with default parameters
megahit,megahit_10,megahit_10_05,sysadmin,Use megahit to assemble a large complex metagenome with meta-large preset with default parameters
megahit,megahit_10,megahit_10_06,goal_oriented,I want to assemble a large complex metagenome with meta-large preset with default parameters
megahit,megahit_10,megahit_10_07,expert,assemble large complex metagenome meta-large preset default parameters
megahit,megahit_10,megahit_10_08,detailed,"I have data that I need to process: assemble a large complex metagenome with meta-large preset with default parameters, saving the result to a specified output file"
megahit,megahit_10,megahit_10_09,informal,"Hey, can you help me assemble a large complex metagenome with meta-large preset with default parameters?"
megahit,megahit_10,megahit_10_10,alternative,"With meta-large preset with default parameters, assemble a large complex metagenome"
meme,meme_01,meme_01_01,original,discover de novo motifs in ChIP-seq peak sequences
meme,meme_01,meme_01_02,beginner,How do I discover de novo motifs in ChIP-seq peak sequences?
meme,meme_01,meme_01_03,student,I need to discover de novo motifs in ChIP-seq peak sequences
meme,meme_01,meme_01_04,polite,Please discover de novo motifs in ChIP-seq peak sequences
meme,meme_01,meme_01_05,sysadmin,Use meme to discover de novo motifs in ChIP-seq peak sequences
meme,meme_01,meme_01_06,goal_oriented,I want to discover de novo motifs in ChIP-seq peak sequences
meme,meme_01,meme_01_07,expert,discover de novo motifs ChIP-seq peak sequences
meme,meme_01,meme_01_08,detailed,I have data that I need to process: discover de novo motifs in ChIP-seq peak sequences
meme,meme_01,meme_01_09,informal,"Hey, can you help me discover de novo motifs in ChIP-seq peak sequences?"
meme,meme_01,meme_01_10,alternative,Perform: discover de novo motifs in ChIP-seq peak sequences
meme,meme_02,meme_02_01,original,scan sequences for known TF binding motifs with FIMO
meme,meme_02,meme_02_02,beginner,How do I scan sequences for known TF binding motifs with FIMO?
meme,meme_02,meme_02_03,student,I need to scan sequences for known TF binding motifs with FIMO
meme,meme_02,meme_02_04,polite,Please scan sequences for known TF binding motifs with FIMO
meme,meme_02,meme_02_05,sysadmin,Use meme to scan sequences for known TF binding motifs with FIMO
meme,meme_02,meme_02_06,goal_oriented,I want to scan sequences for known TF binding motifs with FIMO
meme,meme_02,meme_02_07,expert,scan sequences known TF binding motifs FIMO
meme,meme_02,meme_02_08,detailed,I have data that I need to process: scan sequences for known TF binding motifs with FIMO
meme,meme_02,meme_02_09,informal,"Hey, can you help me scan sequences for known TF binding motifs with FIMO?"
meme,meme_02,meme_02_10,alternative,"With FIMO, scan sequences for known TF binding motifs"
meme,meme_03,meme_03_01,original,compare discovered motifs against a known database with TOMTOM
meme,meme_03,meme_03_02,beginner,How do I compare discovered motifs against a known database with TOMTOM?
meme,meme_03,meme_03_03,student,I need to compare discovered motifs against a known database with TOMTOM
meme,meme_03,meme_03_04,polite,Please compare discovered motifs against a known database with TOMTOM
meme,meme_03,meme_03_05,sysadmin,Use meme to compare discovered motifs against a known database with TOMTOM
meme,meme_03,meme_03_06,goal_oriented,I want to compare discovered motifs against a known database with TOMTOM
meme,meme_03,meme_03_07,expert,compare discovered motifs against known database TOMTOM
meme,meme_03,meme_03_08,detailed,I have data that I need to process: compare discovered motifs against a known database with TOMTOM
meme,meme_03,meme_03_09,informal,"Hey, can you help me compare discovered motifs against a known database with TOMTOM?"
meme,meme_03,meme_03_10,alternative,"With TOMTOM, compare discovered motifs against a known database"
meme,meme_04,meme_04_01,original,test motif enrichment in a foreground vs background with AME
meme,meme_04,meme_04_02,beginner,How do I test motif enrichment in a foreground vs background with AME?
meme,meme_04,meme_04_03,student,I need to test motif enrichment in a foreground vs background with AME
meme,meme_04,meme_04_04,polite,Please test motif enrichment in a foreground vs background with AME
meme,meme_04,meme_04_05,sysadmin,Use meme to test motif enrichment in a foreground vs background with AME
meme,meme_04,meme_04_06,goal_oriented,I want to test motif enrichment in a foreground vs background with AME
meme,meme_04,meme_04_07,expert,test motif enrichment foreground vs background AME
meme,meme_04,meme_04_08,detailed,I have data that I need to process: test motif enrichment in a foreground vs background with AME
meme,meme_04,meme_04_09,informal,"Hey, can you help me test motif enrichment in a foreground vs background with AME?"
meme,meme_04,meme_04_10,alternative,"With AME, test motif enrichment in a foreground vs background"
meme,meme_05,meme_05_01,original,run STREME for fast short motif discovery
meme,meme_05,meme_05_02,beginner,How do I run STREME for fast short motif discovery?
meme,meme_05,meme_05_03,student,I need to run STREME for fast short motif discovery
meme,meme_05,meme_05_04,polite,Please run STREME for fast short motif discovery
meme,meme_05,meme_05_05,sysadmin,Use meme to run STREME for fast short motif discovery
meme,meme_05,meme_05_06,goal_oriented,I want to run STREME for fast short motif discovery
meme,meme_05,meme_05_07,expert,run STREME fast short motif discovery
meme,meme_05,meme_05_08,detailed,"I have data that I need to process: run STREME for fast short motif discovery, utilizing multiple CPU threads for speed"
meme,meme_05,meme_05_09,informal,"Hey, can you help me run STREME for fast short motif discovery?"
meme,meme_05,meme_05_10,alternative,Perform: run STREME for fast short motif discovery
meme,meme_06,meme_06_01,original,extract sequences for peak regions using bedtools first
meme,meme_06,meme_06_02,beginner,How do I extract sequences for peak regions using bedtools first?
meme,meme_06,meme_06_03,student,I need to extract sequences for peak regions using bedtools first
meme,meme_06,meme_06_04,polite,Please extract sequences for peak regions using bedtools first
meme,meme_06,meme_06_05,sysadmin,Use meme to extract sequences for peak regions using bedtools first
meme,meme_06,meme_06_06,goal_oriented,I want to extract sequences for peak regions using bedtools first
meme,meme_06,meme_06_07,expert,extract sequences peak regions bedtools first
meme,meme_06,meme_06_08,detailed,I have data that I need to process: extract sequences for peak regions using bedtools first
meme,meme_06,meme_06_09,informal,"Hey, can you help me extract sequences for peak regions using bedtools first?"
meme,meme_06,meme_06_10,alternative,Perform: extract sequences for peak regions using bedtools first
meme,meme_07,meme_07_01,original,run MEME with reverse complement consideration
meme,meme_07,meme_07_02,beginner,How do I run MEME with reverse complement consideration?
meme,meme_07,meme_07_03,student,I need to run MEME with reverse complement consideration
meme,meme_07,meme_07_04,polite,Please run MEME with reverse complement consideration
meme,meme_07,meme_07_05,sysadmin,Use meme to run MEME with reverse complement consideration
meme,meme_07,meme_07_06,goal_oriented,I want to run MEME with reverse complement consideration
meme,meme_07,meme_07_07,expert,run MEME reverse complement consideration
meme,meme_07,meme_07_08,detailed,I have data that I need to process: run MEME with reverse complement consideration
meme,meme_07,meme_07_09,informal,"Hey, can you help me run MEME with reverse complement consideration?"
meme,meme_07,meme_07_10,alternative,"With reverse complement consideration, run MEME"
meme,meme_08,meme_08_01,original,discover de novo motifs in ChIP-seq peak sequences and write output to a file
meme,meme_08,meme_08_02,beginner,How do I discover de novo motifs in ChIP-seq peak sequences and write output to a file?
meme,meme_08,meme_08_03,student,I need to discover de novo motifs in ChIP-seq peak sequences and write output to a file
meme,meme_08,meme_08_04,polite,Please discover de novo motifs in ChIP-seq peak sequences and write output to a file
meme,meme_08,meme_08_05,sysadmin,Use meme to discover de novo motifs in ChIP-seq peak sequences and write output to a file
meme,meme_08,meme_08_06,goal_oriented,I want to discover de novo motifs in ChIP-seq peak sequences and write output to a file
meme,meme_08,meme_08_07,expert,discover de novo motifs ChIP-seq peak sequences write output file
meme,meme_08,meme_08_08,detailed,"I have data that I need to process: discover de novo motifs in ChIP-seq peak sequences and write output to a file, saving the result to a specified output file"
meme,meme_08,meme_08_09,informal,"Hey, can you help me discover de novo motifs in ChIP-seq peak sequences and write output to a file?"
meme,meme_08,meme_08_10,alternative,Write output to a file after discover de novo motifs in ChIP-seq peak sequences
meme,meme_09,meme_09_01,original,scan sequences for known TF binding motifs with FIMO in quiet mode
meme,meme_09,meme_09_02,beginner,How do I scan sequences for known TF binding motifs with FIMO in quiet mode?
meme,meme_09,meme_09_03,student,I need to scan sequences for known TF binding motifs with FIMO in quiet mode
meme,meme_09,meme_09_04,polite,Please scan sequences for known TF binding motifs with FIMO in quiet mode
meme,meme_09,meme_09_05,sysadmin,Use meme to scan sequences for known TF binding motifs with FIMO in quiet mode
meme,meme_09,meme_09_06,goal_oriented,I want to scan sequences for known TF binding motifs with FIMO in quiet mode
meme,meme_09,meme_09_07,expert,scan sequences known TF binding motifs FIMO quiet mode
meme,meme_09,meme_09_08,detailed,I have data that I need to process: scan sequences for known TF binding motifs with FIMO in quiet mode
meme,meme_09,meme_09_09,informal,"Hey, can you help me scan sequences for known TF binding motifs with FIMO in quiet mode?"
meme,meme_09,meme_09_10,alternative,"With FIMO in quiet mode, scan sequences for known TF binding motifs"
meme,meme_10,meme_10_01,original,compare discovered motifs against a known database with TOMTOM with default parameters
meme,meme_10,meme_10_02,beginner,How do I compare discovered motifs against a known database with TOMTOM with default parameters?
meme,meme_10,meme_10_03,student,I need to compare discovered motifs against a known database with TOMTOM with default parameters
meme,meme_10,meme_10_04,polite,Please compare discovered motifs against a known database with TOMTOM with default parameters
meme,meme_10,meme_10_05,sysadmin,Use meme to compare discovered motifs against a known database with TOMTOM with default parameters
meme,meme_10,meme_10_06,goal_oriented,I want to compare discovered motifs against a known database with TOMTOM with default parameters
meme,meme_10,meme_10_07,expert,compare discovered motifs against known database TOMTOM default parameters
meme,meme_10,meme_10_08,detailed,I have data that I need to process: compare discovered motifs against a known database with TOMTOM with default parameters
meme,meme_10,meme_10_09,informal,"Hey, can you help me compare discovered motifs against a known database with TOMTOM with default parameters?"
meme,meme_10,meme_10_10,alternative,"With TOMTOM with default parameters, compare discovered motifs against a known database"
metabat2,metabat2_01,metabat2_01_01,original,compute contig depths from BAM files for MetaBAT2
metabat2,metabat2_01,metabat2_01_02,beginner,How do I compute contig depths from BAM files for MetaBAT2?
metabat2,metabat2_01,metabat2_01_03,student,I need to compute contig depths from BAM files for MetaBAT2
metabat2,metabat2_01,metabat2_01_04,polite,Please compute contig depths from BAM files for MetaBAT2
metabat2,metabat2_01,metabat2_01_05,sysadmin,Use metabat2 to compute contig depths from BAM files for MetaBAT2
metabat2,metabat2_01,metabat2_01_06,goal_oriented,I want to compute contig depths from BAM files for MetaBAT2
metabat2,metabat2_01,metabat2_01_07,expert,compute contig depths BAM files MetaBAT2
metabat2,metabat2_01,metabat2_01_08,detailed,"I have data that I need to process: compute contig depths from BAM files for MetaBAT2, saving the result to a specified output file"
metabat2,metabat2_01,metabat2_01_09,informal,"Hey, can you help me compute contig depths from BAM files for MetaBAT2?"
metabat2,metabat2_01,metabat2_01_10,alternative,Perform: compute contig depths from BAM files for MetaBAT2
metabat2,metabat2_02,metabat2_02_01,original,bin metagenomic assembly contigs into MAGs
metabat2,metabat2_02,metabat2_02_02,beginner,How do I bin metagenomic assembly contigs into MAGs?
metabat2,metabat2_02,metabat2_02_03,student,I need to bin metagenomic assembly contigs into MAGs
metabat2,metabat2_02,metabat2_02_04,polite,Please bin metagenomic assembly contigs into MAGs
metabat2,metabat2_02,metabat2_02_05,sysadmin,Use metabat2 to bin metagenomic assembly contigs into MAGs
metabat2,metabat2_02,metabat2_02_06,goal_oriented,I want to bin metagenomic assembly contigs into MAGs
metabat2,metabat2_02,metabat2_02_07,expert,bin metagenomic assembly contigs MAGs
metabat2,metabat2_02,metabat2_02_08,detailed,"I have data that I need to process: bin metagenomic assembly contigs into MAGs, utilizing multiple CPU threads for speed, saving the result to a specified output file"
metabat2,metabat2_02,metabat2_02_09,informal,"Hey, can you help me bin metagenomic assembly contigs into MAGs?"
metabat2,metabat2_02,metabat2_02_10,alternative,Perform: bin metagenomic assembly contigs into MAGs
metabat2,metabat2_03,metabat2_03_01,original,run MetaBAT2 binning without coverage information (tetranucleotide only)
metabat2,metabat2_03,metabat2_03_02,beginner,How do I run MetaBAT2 binning without coverage information (tetranucleotide only)?
metabat2,metabat2_03,metabat2_03_03,student,I need to run MetaBAT2 binning without coverage information (tetranucleotide only)
metabat2,metabat2_03,metabat2_03_04,polite,Please run MetaBAT2 binning without coverage information (tetranucleotide only)
metabat2,metabat2_03,metabat2_03_05,sysadmin,Use metabat2 to run MetaBAT2 binning without coverage information (tetranucleotide only)
metabat2,metabat2_03,metabat2_03_06,goal_oriented,I want to run MetaBAT2 binning without coverage information (tetranucleotide only)
metabat2,metabat2_03,metabat2_03_07,expert,run MetaBAT2 binning without coverage information (tetranucleotide only)
metabat2,metabat2_03,metabat2_03_08,detailed,"I have data that I need to process: run MetaBAT2 binning without coverage information (tetranucleotide only), utilizing multiple CPU threads for speed, saving the result to a specified output file"
metabat2,metabat2_03,metabat2_03_09,informal,"Hey, can you help me run MetaBAT2 binning without coverage information (tetranucleotide only)?"
metabat2,metabat2_03,metabat2_03_10,alternative,Perform: run MetaBAT2 binning without coverage information (tetranucleotide only)
metabat2,metabat2_04,metabat2_04_01,original,bin with custom sensitivity settings
metabat2,metabat2_04,metabat2_04_02,beginner,How do I bin with custom sensitivity settings?
metabat2,metabat2_04,metabat2_04_03,student,I need to bin with custom sensitivity settings
metabat2,metabat2_04,metabat2_04_04,polite,Please bin with custom sensitivity settings
metabat2,metabat2_04,metabat2_04_05,sysadmin,Use metabat2 to bin with custom sensitivity settings
metabat2,metabat2_04,metabat2_04_06,goal_oriented,I want to bin with custom sensitivity settings
metabat2,metabat2_04,metabat2_04_07,expert,bin custom sensitivity settings
metabat2,metabat2_04,metabat2_04_08,detailed,"I have data that I need to process: bin with custom sensitivity settings, utilizing multiple CPU threads for speed, saving the result to a specified output file"
metabat2,metabat2_04,metabat2_04_09,informal,"Hey, can you help me bin with custom sensitivity settings?"
metabat2,metabat2_04,metabat2_04_10,alternative,"With custom sensitivity settings, bin"
metabat2,metabat2_05,metabat2_05_01,original,compute contig depths from BAM files for MetaBAT2 with default parameters
metabat2,metabat2_05,metabat2_05_02,beginner,How do I compute contig depths from BAM files for MetaBAT2 with default parameters?
metabat2,metabat2_05,metabat2_05_03,student,I need to compute contig depths from BAM files for MetaBAT2 with default parameters
metabat2,metabat2_05,metabat2_05_04,polite,Please compute contig depths from BAM files for MetaBAT2 with default parameters
metabat2,metabat2_05,metabat2_05_05,sysadmin,Use metabat2 to compute contig depths from BAM files for MetaBAT2 with default parameters
metabat2,metabat2_05,metabat2_05_06,goal_oriented,I want to compute contig depths from BAM files for MetaBAT2 with default parameters
metabat2,metabat2_05,metabat2_05_07,expert,compute contig depths BAM files MetaBAT2 default parameters
metabat2,metabat2_05,metabat2_05_08,detailed,"I have data that I need to process: compute contig depths from BAM files for MetaBAT2 with default parameters, saving the result to a specified output file"
metabat2,metabat2_05,metabat2_05_09,informal,"Hey, can you help me compute contig depths from BAM files for MetaBAT2 with default parameters?"
metabat2,metabat2_05,metabat2_05_10,alternative,"With default parameters, compute contig depths from BAM files for MetaBAT2"
metabat2,metabat2_06,metabat2_06_01,original,bin metagenomic assembly contigs into MAGs with verbose output
metabat2,metabat2_06,metabat2_06_02,beginner,How do I bin metagenomic assembly contigs into MAGs with verbose output?
metabat2,metabat2_06,metabat2_06_03,student,I need to bin metagenomic assembly contigs into MAGs with verbose output
metabat2,metabat2_06,metabat2_06_04,polite,Please bin metagenomic assembly contigs into MAGs with verbose output
metabat2,metabat2_06,metabat2_06_05,sysadmin,Use metabat2 to bin metagenomic assembly contigs into MAGs with verbose output
metabat2,metabat2_06,metabat2_06_06,goal_oriented,I want to bin metagenomic assembly contigs into MAGs with verbose output
metabat2,metabat2_06,metabat2_06_07,expert,bin metagenomic assembly contigs MAGs verbose output
metabat2,metabat2_06,metabat2_06_08,detailed,"I have data that I need to process: bin metagenomic assembly contigs into MAGs with verbose output, utilizing multiple CPU threads for speed, saving the result to a specified output file"
metabat2,metabat2_06,metabat2_06_09,informal,"Hey, can you help me bin metagenomic assembly contigs into MAGs with verbose output?"
metabat2,metabat2_06,metabat2_06_10,alternative,"With verbose output, bin metagenomic assembly contigs into MAGs"
metabat2,metabat2_07,metabat2_07_01,original,run MetaBAT2 binning without coverage information (tetranucleotide only) using multiple threads
metabat2,metabat2_07,metabat2_07_02,beginner,How do I run MetaBAT2 binning without coverage information (tetranucleotide only) using multiple threads?
metabat2,metabat2_07,metabat2_07_03,student,I need to run MetaBAT2 binning without coverage information (tetranucleotide only) using multiple threads
metabat2,metabat2_07,metabat2_07_04,polite,Please run MetaBAT2 binning without coverage information (tetranucleotide only) using multiple threads
metabat2,metabat2_07,metabat2_07_05,sysadmin,Use metabat2 to run MetaBAT2 binning without coverage information (tetranucleotide only) using multiple threads
metabat2,metabat2_07,metabat2_07_06,goal_oriented,I want to run MetaBAT2 binning without coverage information (tetranucleotide only) using multiple threads
metabat2,metabat2_07,metabat2_07_07,expert,run MetaBAT2 binning without coverage information (tetranucleotide only) multiple threads
metabat2,metabat2_07,metabat2_07_08,detailed,"I have data that I need to process: run MetaBAT2 binning without coverage information (tetranucleotide only) using multiple threads, utilizing multiple CPU threads for speed, saving the result to a specified output file"
metabat2,metabat2_07,metabat2_07_09,informal,"Hey, can you help me run MetaBAT2 binning without coverage information (tetranucleotide only) using multiple threads?"
metabat2,metabat2_07,metabat2_07_10,alternative,Perform: run MetaBAT2 binning without coverage information (tetranucleotide only) using multiple threads
metabat2,metabat2_08,metabat2_08_01,original,bin with custom sensitivity settings and write output to a file
metabat2,metabat2_08,metabat2_08_02,beginner,How do I bin with custom sensitivity settings and write output to a file?
metabat2,metabat2_08,metabat2_08_03,student,I need to bin with custom sensitivity settings and write output to a file
metabat2,metabat2_08,metabat2_08_04,polite,Please bin with custom sensitivity settings and write output to a file
metabat2,metabat2_08,metabat2_08_05,sysadmin,Use metabat2 to bin with custom sensitivity settings and write output to a file
metabat2,metabat2_08,metabat2_08_06,goal_oriented,I want to bin with custom sensitivity settings and write output to a file
metabat2,metabat2_08,metabat2_08_07,expert,bin custom sensitivity settings write output file
metabat2,metabat2_08,metabat2_08_08,detailed,"I have data that I need to process: bin with custom sensitivity settings and write output to a file, utilizing multiple CPU threads for speed, saving the result to a specified output file"
metabat2,metabat2_08,metabat2_08_09,informal,"Hey, can you help me bin with custom sensitivity settings and write output to a file?"
metabat2,metabat2_08,metabat2_08_10,alternative,Write output to a file after bin with custom sensitivity settings
metabat2,metabat2_09,metabat2_09_01,original,compute contig depths from BAM files for MetaBAT2 in quiet mode
metabat2,metabat2_09,metabat2_09_02,beginner,How do I compute contig depths from BAM files for MetaBAT2 in quiet mode?
metabat2,metabat2_09,metabat2_09_03,student,I need to compute contig depths from BAM files for MetaBAT2 in quiet mode
metabat2,metabat2_09,metabat2_09_04,polite,Please compute contig depths from BAM files for MetaBAT2 in quiet mode
metabat2,metabat2_09,metabat2_09_05,sysadmin,Use metabat2 to compute contig depths from BAM files for MetaBAT2 in quiet mode
metabat2,metabat2_09,metabat2_09_06,goal_oriented,I want to compute contig depths from BAM files for MetaBAT2 in quiet mode
metabat2,metabat2_09,metabat2_09_07,expert,compute contig depths BAM files MetaBAT2 quiet mode
metabat2,metabat2_09,metabat2_09_08,detailed,"I have data that I need to process: compute contig depths from BAM files for MetaBAT2 in quiet mode, saving the result to a specified output file"
metabat2,metabat2_09,metabat2_09_09,informal,"Hey, can you help me compute contig depths from BAM files for MetaBAT2 in quiet mode?"
metabat2,metabat2_09,metabat2_09_10,alternative,Perform: compute contig depths from BAM files for MetaBAT2 in quiet mode
metabat2,metabat2_10,metabat2_10_01,original,bin metagenomic assembly contigs into MAGs with default parameters
metabat2,metabat2_10,metabat2_10_02,beginner,How do I bin metagenomic assembly contigs into MAGs with default parameters?
metabat2,metabat2_10,metabat2_10_03,student,I need to bin metagenomic assembly contigs into MAGs with default parameters
metabat2,metabat2_10,metabat2_10_04,polite,Please bin metagenomic assembly contigs into MAGs with default parameters
metabat2,metabat2_10,metabat2_10_05,sysadmin,Use metabat2 to bin metagenomic assembly contigs into MAGs with default parameters
metabat2,metabat2_10,metabat2_10_06,goal_oriented,I want to bin metagenomic assembly contigs into MAGs with default parameters
metabat2,metabat2_10,metabat2_10_07,expert,bin metagenomic assembly contigs MAGs default parameters
metabat2,metabat2_10,metabat2_10_08,detailed,"I have data that I need to process: bin metagenomic assembly contigs into MAGs with default parameters, utilizing multiple CPU threads for speed, saving the result to a specified output file"
metabat2,metabat2_10,metabat2_10_09,informal,"Hey, can you help me bin metagenomic assembly contigs into MAGs with default parameters?"
metabat2,metabat2_10,metabat2_10_10,alternative,"With default parameters, bin metagenomic assembly contigs into MAGs"
metaphlan,metaphlan_01,metaphlan_01_01,original,profile microbial community from single-end FASTQ reads
metaphlan,metaphlan_01,metaphlan_01_02,beginner,How do I profile microbial community from single-end FASTQ reads?
metaphlan,metaphlan_01,metaphlan_01_03,student,I need to profile microbial community from single-end FASTQ reads
metaphlan,metaphlan_01,metaphlan_01_04,polite,Please profile microbial community from single-end FASTQ reads
metaphlan,metaphlan_01,metaphlan_01_05,sysadmin,Use metaphlan to profile microbial community from single-end FASTQ reads
metaphlan,metaphlan_01,metaphlan_01_06,goal_oriented,I want to profile microbial community from single-end FASTQ reads
metaphlan,metaphlan_01,metaphlan_01_07,expert,profile microbial community single-end FASTQ reads
metaphlan,metaphlan_01,metaphlan_01_08,detailed,"I have data that I need to process: profile microbial community from single-end FASTQ reads, saving the result to a specified output file"
metaphlan,metaphlan_01,metaphlan_01_09,informal,"Hey, can you help me profile microbial community from single-end FASTQ reads?"
metaphlan,metaphlan_01,metaphlan_01_10,alternative,Perform: profile microbial community from single-end FASTQ reads
metaphlan,metaphlan_02,metaphlan_02_01,original,profile paired-end metagenomic reads
metaphlan,metaphlan_02,metaphlan_02_02,beginner,How do I profile paired-end metagenomic reads?
metaphlan,metaphlan_02,metaphlan_02_03,student,I need to profile paired-end metagenomic reads
metaphlan,metaphlan_02,metaphlan_02_04,polite,Please profile paired-end metagenomic reads
metaphlan,metaphlan_02,metaphlan_02_05,sysadmin,Use metaphlan to profile paired-end metagenomic reads
metaphlan,metaphlan_02,metaphlan_02_06,goal_oriented,I want to profile paired-end metagenomic reads
metaphlan,metaphlan_02,metaphlan_02_07,expert,profile paired-end metagenomic reads
metaphlan,metaphlan_02,metaphlan_02_08,detailed,"I have data that I need to process: profile paired-end metagenomic reads, saving the result to a specified output file"
metaphlan,metaphlan_02,metaphlan_02_09,informal,"Hey, can you help me profile paired-end metagenomic reads?"
metaphlan,metaphlan_02,metaphlan_02_10,alternative,Perform: profile paired-end metagenomic reads
metaphlan,metaphlan_03,metaphlan_03_01,original,save bowtie2 alignments for faster re-runs and profile
metaphlan,metaphlan_03,metaphlan_03_02,beginner,How do I save bowtie2 alignments for faster re-runs and profile?
metaphlan,metaphlan_03,metaphlan_03_03,student,I need to save bowtie2 alignments for faster re-runs and profile
metaphlan,metaphlan_03,metaphlan_03_04,polite,Please save bowtie2 alignments for faster re-runs and profile
metaphlan,metaphlan_03,metaphlan_03_05,sysadmin,Use metaphlan to save bowtie2 alignments for faster re-runs and profile
metaphlan,metaphlan_03,metaphlan_03_06,goal_oriented,I want to save bowtie2 alignments for faster re-runs and profile
metaphlan,metaphlan_03,metaphlan_03_07,expert,save bowtie2 alignments faster re-runs profile
metaphlan,metaphlan_03,metaphlan_03_08,detailed,"I have data that I need to process: save bowtie2 alignments for faster re-runs and profile, saving the result to a specified output file"
metaphlan,metaphlan_03,metaphlan_03_09,informal,"Hey, can you help me save bowtie2 alignments for faster re-runs and profile?"
metaphlan,metaphlan_03,metaphlan_03_10,alternative,Profile after save bowtie2 alignments for faster re-runs
metaphlan,metaphlan_04,metaphlan_04_01,original,merge multiple MetaPhlAn profiles into a single table
metaphlan,metaphlan_04,metaphlan_04_02,beginner,How do I merge multiple MetaPhlAn profiles into a single table?
metaphlan,metaphlan_04,metaphlan_04_03,student,I need to merge multiple MetaPhlAn profiles into a single table
metaphlan,metaphlan_04,metaphlan_04_04,polite,Please merge multiple MetaPhlAn profiles into a single table
metaphlan,metaphlan_04,metaphlan_04_05,sysadmin,Use metaphlan to merge multiple MetaPhlAn profiles into a single table
metaphlan,metaphlan_04,metaphlan_04_06,goal_oriented,I want to merge multiple MetaPhlAn profiles into a single table
metaphlan,metaphlan_04,metaphlan_04_07,expert,merge multiple MetaPhlAn profiles single table
metaphlan,metaphlan_04,metaphlan_04_08,detailed,I have data that I need to process: merge multiple MetaPhlAn profiles into a single table
metaphlan,metaphlan_04,metaphlan_04_09,informal,"Hey, can you help me merge multiple MetaPhlAn profiles into a single table?"
metaphlan,metaphlan_04,metaphlan_04_10,alternative,Perform: merge multiple MetaPhlAn profiles into a single table
metaphlan,metaphlan_05,metaphlan_05_01,original,profile microbial community from single-end FASTQ reads with default parameters
metaphlan,metaphlan_05,metaphlan_05_02,beginner,How do I profile microbial community from single-end FASTQ reads with default parameters?
metaphlan,metaphlan_05,metaphlan_05_03,student,I need to profile microbial community from single-end FASTQ reads with default parameters
metaphlan,metaphlan_05,metaphlan_05_04,polite,Please profile microbial community from single-end FASTQ reads with default parameters
metaphlan,metaphlan_05,metaphlan_05_05,sysadmin,Use metaphlan to profile microbial community from single-end FASTQ reads with default parameters
metaphlan,metaphlan_05,metaphlan_05_06,goal_oriented,I want to profile microbial community from single-end FASTQ reads with default parameters
metaphlan,metaphlan_05,metaphlan_05_07,expert,profile microbial community single-end FASTQ reads default parameters
metaphlan,metaphlan_05,metaphlan_05_08,detailed,"I have data that I need to process: profile microbial community from single-end FASTQ reads with default parameters, saving the result to a specified output file"
metaphlan,metaphlan_05,metaphlan_05_09,informal,"Hey, can you help me profile microbial community from single-end FASTQ reads with default parameters?"
metaphlan,metaphlan_05,metaphlan_05_10,alternative,"With default parameters, profile microbial community from single-end FASTQ reads"
metaphlan,metaphlan_06,metaphlan_06_01,original,profile paired-end metagenomic reads with verbose output
metaphlan,metaphlan_06,metaphlan_06_02,beginner,How do I profile paired-end metagenomic reads with verbose output?
metaphlan,metaphlan_06,metaphlan_06_03,student,I need to profile paired-end metagenomic reads with verbose output
metaphlan,metaphlan_06,metaphlan_06_04,polite,Please profile paired-end metagenomic reads with verbose output
metaphlan,metaphlan_06,metaphlan_06_05,sysadmin,Use metaphlan to profile paired-end metagenomic reads with verbose output
metaphlan,metaphlan_06,metaphlan_06_06,goal_oriented,I want to profile paired-end metagenomic reads with verbose output
metaphlan,metaphlan_06,metaphlan_06_07,expert,profile paired-end metagenomic reads verbose output
metaphlan,metaphlan_06,metaphlan_06_08,detailed,"I have data that I need to process: profile paired-end metagenomic reads with verbose output, saving the result to a specified output file"
metaphlan,metaphlan_06,metaphlan_06_09,informal,"Hey, can you help me profile paired-end metagenomic reads with verbose output?"
metaphlan,metaphlan_06,metaphlan_06_10,alternative,"With verbose output, profile paired-end metagenomic reads"
metaphlan,metaphlan_07,metaphlan_07_01,original,save bowtie2 alignments for faster re-runs and profile using multiple threads
metaphlan,metaphlan_07,metaphlan_07_02,beginner,How do I save bowtie2 alignments for faster re-runs and profile using multiple threads?
metaphlan,metaphlan_07,metaphlan_07_03,student,I need to save bowtie2 alignments for faster re-runs and profile using multiple threads
metaphlan,metaphlan_07,metaphlan_07_04,polite,Please save bowtie2 alignments for faster re-runs and profile using multiple threads
metaphlan,metaphlan_07,metaphlan_07_05,sysadmin,Use metaphlan to save bowtie2 alignments for faster re-runs and profile using multiple threads
metaphlan,metaphlan_07,metaphlan_07_06,goal_oriented,I want to save bowtie2 alignments for faster re-runs and profile using multiple threads
metaphlan,metaphlan_07,metaphlan_07_07,expert,save bowtie2 alignments faster re-runs profile multiple threads
metaphlan,metaphlan_07,metaphlan_07_08,detailed,"I have data that I need to process: save bowtie2 alignments for faster re-runs and profile using multiple threads, utilizing multiple CPU threads for speed, saving the result to a specified output file"
metaphlan,metaphlan_07,metaphlan_07_09,informal,"Hey, can you help me save bowtie2 alignments for faster re-runs and profile using multiple threads?"
metaphlan,metaphlan_07,metaphlan_07_10,alternative,Profile using multiple threads after save bowtie2 alignments for faster re-runs
metaphlan,metaphlan_08,metaphlan_08_01,original,merge multiple MetaPhlAn profiles into a single table
metaphlan,metaphlan_08,metaphlan_08_02,beginner,How do I merge multiple MetaPhlAn profiles into a single table?
metaphlan,metaphlan_08,metaphlan_08_03,student,I need to merge multiple MetaPhlAn profiles into a single table
metaphlan,metaphlan_08,metaphlan_08_04,polite,Please merge multiple MetaPhlAn profiles into a single table
metaphlan,metaphlan_08,metaphlan_08_05,sysadmin,Use metaphlan to merge multiple MetaPhlAn profiles into a single table
metaphlan,metaphlan_08,metaphlan_08_06,goal_oriented,I want to merge multiple MetaPhlAn profiles into a single table
metaphlan,metaphlan_08,metaphlan_08_07,expert,merge multiple MetaPhlAn profiles single table
metaphlan,metaphlan_08,metaphlan_08_08,detailed,I have data that I need to process: merge multiple MetaPhlAn profiles into a single table
metaphlan,metaphlan_08,metaphlan_08_09,informal,"Hey, can you help me merge multiple MetaPhlAn profiles into a single table?"
metaphlan,metaphlan_08,metaphlan_08_10,alternative,Perform: merge multiple MetaPhlAn profiles into a single table
metaphlan,metaphlan_09,metaphlan_09_01,original,profile microbial community from single-end FASTQ reads in quiet mode
metaphlan,metaphlan_09,metaphlan_09_02,beginner,How do I profile microbial community from single-end FASTQ reads in quiet mode?
metaphlan,metaphlan_09,metaphlan_09_03,student,I need to profile microbial community from single-end FASTQ reads in quiet mode
metaphlan,metaphlan_09,metaphlan_09_04,polite,Please profile microbial community from single-end FASTQ reads in quiet mode
metaphlan,metaphlan_09,metaphlan_09_05,sysadmin,Use metaphlan to profile microbial community from single-end FASTQ reads in quiet mode
metaphlan,metaphlan_09,metaphlan_09_06,goal_oriented,I want to profile microbial community from single-end FASTQ reads in quiet mode
metaphlan,metaphlan_09,metaphlan_09_07,expert,profile microbial community single-end FASTQ reads quiet mode
metaphlan,metaphlan_09,metaphlan_09_08,detailed,"I have data that I need to process: profile microbial community from single-end FASTQ reads in quiet mode, saving the result to a specified output file"
metaphlan,metaphlan_09,metaphlan_09_09,informal,"Hey, can you help me profile microbial community from single-end FASTQ reads in quiet mode?"
metaphlan,metaphlan_09,metaphlan_09_10,alternative,Perform: profile microbial community from single-end FASTQ reads in quiet mode
metaphlan,metaphlan_10,metaphlan_10_01,original,profile paired-end metagenomic reads with default parameters
metaphlan,metaphlan_10,metaphlan_10_02,beginner,How do I profile paired-end metagenomic reads with default parameters?
metaphlan,metaphlan_10,metaphlan_10_03,student,I need to profile paired-end metagenomic reads with default parameters
metaphlan,metaphlan_10,metaphlan_10_04,polite,Please profile paired-end metagenomic reads with default parameters
metaphlan,metaphlan_10,metaphlan_10_05,sysadmin,Use metaphlan to profile paired-end metagenomic reads with default parameters
metaphlan,metaphlan_10,metaphlan_10_06,goal_oriented,I want to profile paired-end metagenomic reads with default parameters
metaphlan,metaphlan_10,metaphlan_10_07,expert,profile paired-end metagenomic reads default parameters
metaphlan,metaphlan_10,metaphlan_10_08,detailed,"I have data that I need to process: profile paired-end metagenomic reads with default parameters, saving the result to a specified output file"
metaphlan,metaphlan_10,metaphlan_10_09,informal,"Hey, can you help me profile paired-end metagenomic reads with default parameters?"
metaphlan,metaphlan_10,metaphlan_10_10,alternative,"With default parameters, profile paired-end metagenomic reads"
miniasm,miniasm_01,miniasm_01_01,original,compute all-vs-all overlaps for ONT reads with minimap2
miniasm,miniasm_01,miniasm_01_02,beginner,How do I compute all-vs-all overlaps for ONT reads with minimap2?
miniasm,miniasm_01,miniasm_01_03,student,I need to compute all-vs-all overlaps for ONT reads with minimap2
miniasm,miniasm_01,miniasm_01_04,polite,Please compute all-vs-all overlaps for ONT reads with minimap2
miniasm,miniasm_01,miniasm_01_05,sysadmin,Use miniasm to compute all-vs-all overlaps for ONT reads with minimap2
miniasm,miniasm_01,miniasm_01_06,goal_oriented,I want to compute all-vs-all overlaps for ONT reads with minimap2
miniasm,miniasm_01,miniasm_01_07,expert,compute all-vs-all overlaps ONT reads minimap2
miniasm,miniasm_01,miniasm_01_08,detailed,"I have data that I need to process: compute all-vs-all overlaps for ONT reads with minimap2, utilizing multiple CPU threads for speed"
miniasm,miniasm_01,miniasm_01_09,informal,"Hey, can you help me compute all-vs-all overlaps for ONT reads with minimap2?"
miniasm,miniasm_01,miniasm_01_10,alternative,"With minimap2, compute all-vs-all overlaps for ONT reads"
miniasm,miniasm_02,miniasm_02_01,original,assemble ONT reads from precomputed overlaps
miniasm,miniasm_02,miniasm_02_02,beginner,How do I assemble ONT reads from precomputed overlaps?
miniasm,miniasm_02,miniasm_02_03,student,I need to assemble ONT reads from precomputed overlaps
miniasm,miniasm_02,miniasm_02_04,polite,Please assemble ONT reads from precomputed overlaps
miniasm,miniasm_02,miniasm_02_05,sysadmin,Use miniasm to assemble ONT reads from precomputed overlaps
miniasm,miniasm_02,miniasm_02_06,goal_oriented,I want to assemble ONT reads from precomputed overlaps
miniasm,miniasm_02,miniasm_02_07,expert,assemble ONT reads precomputed overlaps
miniasm,miniasm_02,miniasm_02_08,detailed,I have data that I need to process: assemble ONT reads from precomputed overlaps
miniasm,miniasm_02,miniasm_02_09,informal,"Hey, can you help me assemble ONT reads from precomputed overlaps?"
miniasm,miniasm_02,miniasm_02_10,alternative,Perform: assemble ONT reads from precomputed overlaps
miniasm,miniasm_03,miniasm_03_01,original,convert miniasm GFA output to FASTA
miniasm,miniasm_03,miniasm_03_02,beginner,How do I convert miniasm GFA output to FASTA?
miniasm,miniasm_03,miniasm_03_03,student,I need to convert miniasm GFA output to FASTA
miniasm,miniasm_03,miniasm_03_04,polite,Please convert miniasm GFA output to FASTA
miniasm,miniasm_03,miniasm_03_05,sysadmin,Use miniasm to convert miniasm GFA output to FASTA
miniasm,miniasm_03,miniasm_03_06,goal_oriented,I want to convert miniasm GFA output to FASTA
miniasm,miniasm_03,miniasm_03_07,expert,convert miniasm GFA output FASTA
miniasm,miniasm_03,miniasm_03_08,detailed,I have data that I need to process: convert miniasm GFA output to FASTA
miniasm,miniasm_03,miniasm_03_09,informal,"Hey, can you help me convert miniasm GFA output to FASTA?"
miniasm,miniasm_03,miniasm_03_10,alternative,Output FASTA by performing: convert miniasm GFA output
miniasm,miniasm_04,miniasm_04_01,original,compute all-vs-all overlaps for ONT reads with minimap2
miniasm,miniasm_04,miniasm_04_02,beginner,How do I compute all-vs-all overlaps for ONT reads with minimap2?
miniasm,miniasm_04,miniasm_04_03,student,I need to compute all-vs-all overlaps for ONT reads with minimap2
miniasm,miniasm_04,miniasm_04_04,polite,Please compute all-vs-all overlaps for ONT reads with minimap2
miniasm,miniasm_04,miniasm_04_05,sysadmin,Use miniasm to compute all-vs-all overlaps for ONT reads with minimap2
miniasm,miniasm_04,miniasm_04_06,goal_oriented,I want to compute all-vs-all overlaps for ONT reads with minimap2
miniasm,miniasm_04,miniasm_04_07,expert,compute all-vs-all overlaps ONT reads minimap2
miniasm,miniasm_04,miniasm_04_08,detailed,"I have data that I need to process: compute all-vs-all overlaps for ONT reads with minimap2, utilizing multiple CPU threads for speed"
miniasm,miniasm_04,miniasm_04_09,informal,"Hey, can you help me compute all-vs-all overlaps for ONT reads with minimap2?"
miniasm,miniasm_04,miniasm_04_10,alternative,"With minimap2, compute all-vs-all overlaps for ONT reads"
miniasm,miniasm_05,miniasm_05_01,original,assemble ONT reads from precomputed overlaps with default parameters
miniasm,miniasm_05,miniasm_05_02,beginner,How do I assemble ONT reads from precomputed overlaps with default parameters?
miniasm,miniasm_05,miniasm_05_03,student,I need to assemble ONT reads from precomputed overlaps with default parameters
miniasm,miniasm_05,miniasm_05_04,polite,Please assemble ONT reads from precomputed overlaps with default parameters
miniasm,miniasm_05,miniasm_05_05,sysadmin,Use miniasm to assemble ONT reads from precomputed overlaps with default parameters
miniasm,miniasm_05,miniasm_05_06,goal_oriented,I want to assemble ONT reads from precomputed overlaps with default parameters
miniasm,miniasm_05,miniasm_05_07,expert,assemble ONT reads precomputed overlaps default parameters
miniasm,miniasm_05,miniasm_05_08,detailed,I have data that I need to process: assemble ONT reads from precomputed overlaps with default parameters
miniasm,miniasm_05,miniasm_05_09,informal,"Hey, can you help me assemble ONT reads from precomputed overlaps with default parameters?"
miniasm,miniasm_05,miniasm_05_10,alternative,"With default parameters, assemble ONT reads from precomputed overlaps"
miniasm,miniasm_06,miniasm_06_01,original,convert miniasm GFA output to FASTA
miniasm,miniasm_06,miniasm_06_02,beginner,How do I convert miniasm GFA output to FASTA?
miniasm,miniasm_06,miniasm_06_03,student,I need to convert miniasm GFA output to FASTA
miniasm,miniasm_06,miniasm_06_04,polite,Please convert miniasm GFA output to FASTA
miniasm,miniasm_06,miniasm_06_05,sysadmin,Use miniasm to convert miniasm GFA output to FASTA
miniasm,miniasm_06,miniasm_06_06,goal_oriented,I want to convert miniasm GFA output to FASTA
miniasm,miniasm_06,miniasm_06_07,expert,convert miniasm GFA output FASTA
miniasm,miniasm_06,miniasm_06_08,detailed,I have data that I need to process: convert miniasm GFA output to FASTA
miniasm,miniasm_06,miniasm_06_09,informal,"Hey, can you help me convert miniasm GFA output to FASTA?"
miniasm,miniasm_06,miniasm_06_10,alternative,Output FASTA by performing: convert miniasm GFA output
miniasm,miniasm_07,miniasm_07_01,original,compute all-vs-all overlaps for ONT reads with minimap2
miniasm,miniasm_07,miniasm_07_02,beginner,How do I compute all-vs-all overlaps for ONT reads with minimap2?
miniasm,miniasm_07,miniasm_07_03,student,I need to compute all-vs-all overlaps for ONT reads with minimap2
miniasm,miniasm_07,miniasm_07_04,polite,Please compute all-vs-all overlaps for ONT reads with minimap2
miniasm,miniasm_07,miniasm_07_05,sysadmin,Use miniasm to compute all-vs-all overlaps for ONT reads with minimap2
miniasm,miniasm_07,miniasm_07_06,goal_oriented,I want to compute all-vs-all overlaps for ONT reads with minimap2
miniasm,miniasm_07,miniasm_07_07,expert,compute all-vs-all overlaps ONT reads minimap2
miniasm,miniasm_07,miniasm_07_08,detailed,"I have data that I need to process: compute all-vs-all overlaps for ONT reads with minimap2, utilizing multiple CPU threads for speed"
miniasm,miniasm_07,miniasm_07_09,informal,"Hey, can you help me compute all-vs-all overlaps for ONT reads with minimap2?"
miniasm,miniasm_07,miniasm_07_10,alternative,"With minimap2, compute all-vs-all overlaps for ONT reads"
miniasm,miniasm_08,miniasm_08_01,original,assemble ONT reads from precomputed overlaps
miniasm,miniasm_08,miniasm_08_02,beginner,How do I assemble ONT reads from precomputed overlaps?
miniasm,miniasm_08,miniasm_08_03,student,I need to assemble ONT reads from precomputed overlaps
miniasm,miniasm_08,miniasm_08_04,polite,Please assemble ONT reads from precomputed overlaps
miniasm,miniasm_08,miniasm_08_05,sysadmin,Use miniasm to assemble ONT reads from precomputed overlaps
miniasm,miniasm_08,miniasm_08_06,goal_oriented,I want to assemble ONT reads from precomputed overlaps
miniasm,miniasm_08,miniasm_08_07,expert,assemble ONT reads precomputed overlaps
miniasm,miniasm_08,miniasm_08_08,detailed,I have data that I need to process: assemble ONT reads from precomputed overlaps
miniasm,miniasm_08,miniasm_08_09,informal,"Hey, can you help me assemble ONT reads from precomputed overlaps?"
miniasm,miniasm_08,miniasm_08_10,alternative,Perform: assemble ONT reads from precomputed overlaps
miniasm,miniasm_09,miniasm_09_01,original,convert miniasm GFA output to FASTA
miniasm,miniasm_09,miniasm_09_02,beginner,How do I convert miniasm GFA output to FASTA?
miniasm,miniasm_09,miniasm_09_03,student,I need to convert miniasm GFA output to FASTA
miniasm,miniasm_09,miniasm_09_04,polite,Please convert miniasm GFA output to FASTA
miniasm,miniasm_09,miniasm_09_05,sysadmin,Use miniasm to convert miniasm GFA output to FASTA
miniasm,miniasm_09,miniasm_09_06,goal_oriented,I want to convert miniasm GFA output to FASTA
miniasm,miniasm_09,miniasm_09_07,expert,convert miniasm GFA output FASTA
miniasm,miniasm_09,miniasm_09_08,detailed,I have data that I need to process: convert miniasm GFA output to FASTA
miniasm,miniasm_09,miniasm_09_09,informal,"Hey, can you help me convert miniasm GFA output to FASTA?"
miniasm,miniasm_09,miniasm_09_10,alternative,Output FASTA by performing: convert miniasm GFA output
miniasm,miniasm_10,miniasm_10_01,original,compute all-vs-all overlaps for ONT reads with minimap2 with default parameters
miniasm,miniasm_10,miniasm_10_02,beginner,How do I compute all-vs-all overlaps for ONT reads with minimap2 with default parameters?
miniasm,miniasm_10,miniasm_10_03,student,I need to compute all-vs-all overlaps for ONT reads with minimap2 with default parameters
miniasm,miniasm_10,miniasm_10_04,polite,Please compute all-vs-all overlaps for ONT reads with minimap2 with default parameters
miniasm,miniasm_10,miniasm_10_05,sysadmin,Use miniasm to compute all-vs-all overlaps for ONT reads with minimap2 with default parameters
miniasm,miniasm_10,miniasm_10_06,goal_oriented,I want to compute all-vs-all overlaps for ONT reads with minimap2 with default parameters
miniasm,miniasm_10,miniasm_10_07,expert,compute all-vs-all overlaps ONT reads minimap2 default parameters
miniasm,miniasm_10,miniasm_10_08,detailed,"I have data that I need to process: compute all-vs-all overlaps for ONT reads with minimap2 with default parameters, utilizing multiple CPU threads for speed"
miniasm,miniasm_10,miniasm_10_09,informal,"Hey, can you help me compute all-vs-all overlaps for ONT reads with minimap2 with default parameters?"
miniasm,miniasm_10,miniasm_10_10,alternative,"With minimap2 with default parameters, compute all-vs-all overlaps for ONT reads"
minimap2,minimap2_01,minimap2_01_01,original,align Oxford Nanopore reads to a reference genome
minimap2,minimap2_01,minimap2_01_02,beginner,How do I align Oxford Nanopore reads to a reference genome?
minimap2,minimap2_01,minimap2_01_03,student,I need to align Oxford Nanopore reads to a reference genome
minimap2,minimap2_01,minimap2_01_04,polite,Please align Oxford Nanopore reads to a reference genome
minimap2,minimap2_01,minimap2_01_05,sysadmin,Use minimap2 to align Oxford Nanopore reads to a reference genome
minimap2,minimap2_01,minimap2_01_06,goal_oriented,I want to align Oxford Nanopore reads to a reference genome
minimap2,minimap2_01,minimap2_01_07,expert,align Oxford Nanopore reads reference genome
minimap2,minimap2_01,minimap2_01_08,detailed,"I have data that I need to process: align Oxford Nanopore reads to a reference genome, utilizing multiple CPU threads for speed, saving the result to a specified output file"
minimap2,minimap2_01,minimap2_01_09,informal,"Hey, can you help me align Oxford Nanopore reads to a reference genome?"
minimap2,minimap2_01,minimap2_01_10,alternative,Output a reference genome by performing: align Oxford Nanopore reads
minimap2,minimap2_02,minimap2_02_01,original,align PacBio HiFi (CCS) reads to a reference genome
minimap2,minimap2_02,minimap2_02_02,beginner,How do I align PacBio HiFi (CCS) reads to a reference genome?
minimap2,minimap2_02,minimap2_02_03,student,I need to align PacBio HiFi (CCS) reads to a reference genome
minimap2,minimap2_02,minimap2_02_04,polite,Please align PacBio HiFi (CCS) reads to a reference genome
minimap2,minimap2_02,minimap2_02_05,sysadmin,Use minimap2 to align PacBio HiFi (CCS) reads to a reference genome
minimap2,minimap2_02,minimap2_02_06,goal_oriented,I want to align PacBio HiFi (CCS) reads to a reference genome
minimap2,minimap2_02,minimap2_02_07,expert,align PacBio HiFi (CCS) reads reference genome
minimap2,minimap2_02,minimap2_02_08,detailed,"I have data that I need to process: align PacBio HiFi (CCS) reads to a reference genome, utilizing multiple CPU threads for speed, saving the result to a specified output file"
minimap2,minimap2_02,minimap2_02_09,informal,"Hey, can you help me align PacBio HiFi (CCS) reads to a reference genome?"
minimap2,minimap2_02,minimap2_02_10,alternative,Output a reference genome by performing: align PacBio HiFi (CCS) reads
minimap2,minimap2_03,minimap2_03_01,original,align Nanopore cDNA reads for RNA-seq spliced alignment
minimap2,minimap2_03,minimap2_03_02,beginner,How do I align Nanopore cDNA reads for RNA-seq spliced alignment?
minimap2,minimap2_03,minimap2_03_03,student,I need to align Nanopore cDNA reads for RNA-seq spliced alignment
minimap2,minimap2_03,minimap2_03_04,polite,Please align Nanopore cDNA reads for RNA-seq spliced alignment
minimap2,minimap2_03,minimap2_03_05,sysadmin,Use minimap2 to align Nanopore cDNA reads for RNA-seq spliced alignment
minimap2,minimap2_03,minimap2_03_06,goal_oriented,I want to align Nanopore cDNA reads for RNA-seq spliced alignment
minimap2,minimap2_03,minimap2_03_07,expert,align Nanopore cDNA reads RNA-seq spliced alignment
minimap2,minimap2_03,minimap2_03_08,detailed,"I have data that I need to process: align Nanopore cDNA reads for RNA-seq spliced alignment, utilizing multiple CPU threads for speed, saving the result to a specified output file"
minimap2,minimap2_03,minimap2_03_09,informal,"Hey, can you help me align Nanopore cDNA reads for RNA-seq spliced alignment?"
minimap2,minimap2_03,minimap2_03_10,alternative,Perform: align Nanopore cDNA reads for RNA-seq spliced alignment
minimap2,minimap2_04,minimap2_04_01,original,compare two genome assemblies (assembly vs reference)
minimap2,minimap2_04,minimap2_04_02,beginner,How do I compare two genome assemblies (assembly vs reference)?
minimap2,minimap2_04,minimap2_04_03,student,I need to compare two genome assemblies (assembly vs reference)
minimap2,minimap2_04,minimap2_04_04,polite,Please compare two genome assemblies (assembly vs reference)
minimap2,minimap2_04,minimap2_04_05,sysadmin,Use minimap2 to compare two genome assemblies (assembly vs reference)
minimap2,minimap2_04,minimap2_04_06,goal_oriented,I want to compare two genome assemblies (assembly vs reference)
minimap2,minimap2_04,minimap2_04_07,expert,compare two genome assemblies (assembly vs reference)
minimap2,minimap2_04,minimap2_04_08,detailed,"I have data that I need to process: compare two genome assemblies (assembly vs reference), utilizing multiple CPU threads for speed, saving the result to a specified output file"
minimap2,minimap2_04,minimap2_04_09,informal,"Hey, can you help me compare two genome assemblies (assembly vs reference)?"
minimap2,minimap2_04,minimap2_04_10,alternative,Perform: compare two genome assemblies (assembly vs reference)
minimap2,minimap2_05,minimap2_05_01,original,map long reads and output in PAF format for structural variant analysis
minimap2,minimap2_05,minimap2_05_02,beginner,How do I map long reads and output in PAF format for structural variant analysis?
minimap2,minimap2_05,minimap2_05_03,student,I need to map long reads and output in PAF format for structural variant analysis
minimap2,minimap2_05,minimap2_05_04,polite,Please map long reads and output in PAF format for structural variant analysis
minimap2,minimap2_05,minimap2_05_05,sysadmin,Use minimap2 to map long reads and output in PAF format for structural variant analysis
minimap2,minimap2_05,minimap2_05_06,goal_oriented,I want to map long reads and output in PAF format for structural variant analysis
minimap2,minimap2_05,minimap2_05_07,expert,map long reads output PAF format structural variant analysis
minimap2,minimap2_05,minimap2_05_08,detailed,"I have data that I need to process: map long reads and output in PAF format for structural variant analysis, utilizing multiple CPU threads for speed"
minimap2,minimap2_05,minimap2_05_09,informal,"Hey, can you help me map long reads and output in PAF format for structural variant analysis?"
minimap2,minimap2_05,minimap2_05_10,alternative,Output in PAF format for structural variant analysis after map long reads
minimap2,minimap2_06,minimap2_06_01,original,compute all-vs-all overlaps for de novo ONT assembly
minimap2,minimap2_06,minimap2_06_02,beginner,How do I compute all-vs-all overlaps for de novo ONT assembly?
minimap2,minimap2_06,minimap2_06_03,student,I need to compute all-vs-all overlaps for de novo ONT assembly
minimap2,minimap2_06,minimap2_06_04,polite,Please compute all-vs-all overlaps for de novo ONT assembly
minimap2,minimap2_06,minimap2_06_05,sysadmin,Use minimap2 to compute all-vs-all overlaps for de novo ONT assembly
minimap2,minimap2_06,minimap2_06_06,goal_oriented,I want to compute all-vs-all overlaps for de novo ONT assembly
minimap2,minimap2_06,minimap2_06_07,expert,compute all-vs-all overlaps de novo ONT assembly
minimap2,minimap2_06,minimap2_06_08,detailed,"I have data that I need to process: compute all-vs-all overlaps for de novo ONT assembly, utilizing multiple CPU threads for speed"
minimap2,minimap2_06,minimap2_06_09,informal,"Hey, can you help me compute all-vs-all overlaps for de novo ONT assembly?"
minimap2,minimap2_06,minimap2_06_10,alternative,Perform: compute all-vs-all overlaps for de novo ONT assembly
minimap2,minimap2_07,minimap2_07_01,original,build a reusable minimap2 index for repeated ONT alignments
minimap2,minimap2_07,minimap2_07_02,beginner,How do I build a reusable minimap2 index for repeated ONT alignments?
minimap2,minimap2_07,minimap2_07_03,student,I need to build a reusable minimap2 index for repeated ONT alignments
minimap2,minimap2_07,minimap2_07_04,polite,Please build a reusable minimap2 index for repeated ONT alignments
minimap2,minimap2_07,minimap2_07_05,sysadmin,Use minimap2 to build a reusable minimap2 index for repeated ONT alignments
minimap2,minimap2_07,minimap2_07_06,goal_oriented,I want to build a reusable minimap2 index for repeated ONT alignments
minimap2,minimap2_07,minimap2_07_07,expert,build reusable minimap2 index repeated ONT alignments
minimap2,minimap2_07,minimap2_07_08,detailed,I have data that I need to process: build a reusable minimap2 index for repeated ONT alignments
minimap2,minimap2_07,minimap2_07_09,informal,"Hey, can you help me build a reusable minimap2 index for repeated ONT alignments?"
minimap2,minimap2_07,minimap2_07_10,alternative,Perform: build a reusable minimap2 index for repeated ONT alignments
minimap2,minimap2_08,minimap2_08_01,original,align Oxford Nanopore reads to a reference genome
minimap2,minimap2_08,minimap2_08_02,beginner,How do I align Oxford Nanopore reads to a reference genome?
minimap2,minimap2_08,minimap2_08_03,student,I need to align Oxford Nanopore reads to a reference genome
minimap2,minimap2_08,minimap2_08_04,polite,Please align Oxford Nanopore reads to a reference genome
minimap2,minimap2_08,minimap2_08_05,sysadmin,Use minimap2 to align Oxford Nanopore reads to a reference genome
minimap2,minimap2_08,minimap2_08_06,goal_oriented,I want to align Oxford Nanopore reads to a reference genome
minimap2,minimap2_08,minimap2_08_07,expert,align Oxford Nanopore reads reference genome
minimap2,minimap2_08,minimap2_08_08,detailed,"I have data that I need to process: align Oxford Nanopore reads to a reference genome, utilizing multiple CPU threads for speed, saving the result to a specified output file"
minimap2,minimap2_08,minimap2_08_09,informal,"Hey, can you help me align Oxford Nanopore reads to a reference genome?"
minimap2,minimap2_08,minimap2_08_10,alternative,Output a reference genome by performing: align Oxford Nanopore reads
minimap2,minimap2_09,minimap2_09_01,original,align PacBio HiFi (CCS) reads to a reference genome
minimap2,minimap2_09,minimap2_09_02,beginner,How do I align PacBio HiFi (CCS) reads to a reference genome?
minimap2,minimap2_09,minimap2_09_03,student,I need to align PacBio HiFi (CCS) reads to a reference genome
minimap2,minimap2_09,minimap2_09_04,polite,Please align PacBio HiFi (CCS) reads to a reference genome
minimap2,minimap2_09,minimap2_09_05,sysadmin,Use minimap2 to align PacBio HiFi (CCS) reads to a reference genome
minimap2,minimap2_09,minimap2_09_06,goal_oriented,I want to align PacBio HiFi (CCS) reads to a reference genome
minimap2,minimap2_09,minimap2_09_07,expert,align PacBio HiFi (CCS) reads reference genome
minimap2,minimap2_09,minimap2_09_08,detailed,"I have data that I need to process: align PacBio HiFi (CCS) reads to a reference genome, utilizing multiple CPU threads for speed, saving the result to a specified output file"
minimap2,minimap2_09,minimap2_09_09,informal,"Hey, can you help me align PacBio HiFi (CCS) reads to a reference genome?"
minimap2,minimap2_09,minimap2_09_10,alternative,Output a reference genome by performing: align PacBio HiFi (CCS) reads
minimap2,minimap2_10,minimap2_10_01,original,align Nanopore cDNA reads for RNA-seq spliced alignment with default parameters
minimap2,minimap2_10,minimap2_10_02,beginner,How do I align Nanopore cDNA reads for RNA-seq spliced alignment with default parameters?
minimap2,minimap2_10,minimap2_10_03,student,I need to align Nanopore cDNA reads for RNA-seq spliced alignment with default parameters
minimap2,minimap2_10,minimap2_10_04,polite,Please align Nanopore cDNA reads for RNA-seq spliced alignment with default parameters
minimap2,minimap2_10,minimap2_10_05,sysadmin,Use minimap2 to align Nanopore cDNA reads for RNA-seq spliced alignment with default parameters
minimap2,minimap2_10,minimap2_10_06,goal_oriented,I want to align Nanopore cDNA reads for RNA-seq spliced alignment with default parameters
minimap2,minimap2_10,minimap2_10_07,expert,align Nanopore cDNA reads RNA-seq spliced alignment default parameters
minimap2,minimap2_10,minimap2_10_08,detailed,"I have data that I need to process: align Nanopore cDNA reads for RNA-seq spliced alignment with default parameters, utilizing multiple CPU threads for speed, saving the result to a specified output file"
minimap2,minimap2_10,minimap2_10_09,informal,"Hey, can you help me align Nanopore cDNA reads for RNA-seq spliced alignment with default parameters?"
minimap2,minimap2_10,minimap2_10_10,alternative,"With default parameters, align Nanopore cDNA reads for RNA-seq spliced alignment"
mmseqs2,mmseqs2_01,mmseqs2_01_01,original,search protein FASTA against UniRef50 and output BLAST tabular results
mmseqs2,mmseqs2_01,mmseqs2_01_02,beginner,How do I search protein FASTA against UniRef50 and output BLAST tabular results?
mmseqs2,mmseqs2_01,mmseqs2_01_03,student,I need to search protein FASTA against UniRef50 and output BLAST tabular results
mmseqs2,mmseqs2_01,mmseqs2_01_04,polite,Please search protein FASTA against UniRef50 and output BLAST tabular results
mmseqs2,mmseqs2_01,mmseqs2_01_05,sysadmin,Use mmseqs2 to search protein FASTA against UniRef50 and output BLAST tabular results
mmseqs2,mmseqs2_01,mmseqs2_01_06,goal_oriented,I want to search protein FASTA against UniRef50 and output BLAST tabular results
mmseqs2,mmseqs2_01,mmseqs2_01_07,expert,search protein FASTA against UniRef50 output BLAST tabular results
mmseqs2,mmseqs2_01,mmseqs2_01_08,detailed,"I have data that I need to process: search protein FASTA against UniRef50 and output BLAST tabular results, utilizing multiple CPU threads for speed"
mmseqs2,mmseqs2_01,mmseqs2_01_09,informal,"Hey, can you help me search protein FASTA against UniRef50 and output BLAST tabular results?"
mmseqs2,mmseqs2_01,mmseqs2_01_10,alternative,Output BLAST tabular results after search protein FASTA against UniRef50
mmseqs2,mmseqs2_02,mmseqs2_02_01,original,cluster protein sequences at 90% identity
mmseqs2,mmseqs2_02,mmseqs2_02_02,beginner,How do I cluster protein sequences at 90% identity?
mmseqs2,mmseqs2_02,mmseqs2_02_03,student,I need to cluster protein sequences at 90% identity
mmseqs2,mmseqs2_02,mmseqs2_02_04,polite,Please cluster protein sequences at 90% identity
mmseqs2,mmseqs2_02,mmseqs2_02_05,sysadmin,Use mmseqs2 to cluster protein sequences at 90% identity
mmseqs2,mmseqs2_02,mmseqs2_02_06,goal_oriented,I want to cluster protein sequences at 90% identity
mmseqs2,mmseqs2_02,mmseqs2_02_07,expert,cluster protein sequences at 90% identity
mmseqs2,mmseqs2_02,mmseqs2_02_08,detailed,"I have data that I need to process: cluster protein sequences at 90% identity, utilizing multiple CPU threads for speed"
mmseqs2,mmseqs2_02,mmseqs2_02_09,informal,"Hey, can you help me cluster protein sequences at 90% identity?"
mmseqs2,mmseqs2_02,mmseqs2_02_10,alternative,Perform: cluster protein sequences at 90% identity
mmseqs2,mmseqs2_03,mmseqs2_03_01,original,fast linear-time clustering of large metagenomic protein set at 50% identity
mmseqs2,mmseqs2_03,mmseqs2_03_02,beginner,How do I fast linear-time clustering of large metagenomic protein set at 50% identity?
mmseqs2,mmseqs2_03,mmseqs2_03_03,student,I need to fast linear-time clustering of large metagenomic protein set at 50% identity
mmseqs2,mmseqs2_03,mmseqs2_03_04,polite,Please fast linear-time clustering of large metagenomic protein set at 50% identity
mmseqs2,mmseqs2_03,mmseqs2_03_05,sysadmin,Use mmseqs2 to fast linear-time clustering of large metagenomic protein set at 50% identity
mmseqs2,mmseqs2_03,mmseqs2_03_06,goal_oriented,I want to fast linear-time clustering of large metagenomic protein set at 50% identity
mmseqs2,mmseqs2_03,mmseqs2_03_07,expert,fast linear-time clustering of large metagenomic protein set at 50% identity
mmseqs2,mmseqs2_03,mmseqs2_03_08,detailed,"I have data that I need to process: fast linear-time clustering of large metagenomic protein set at 50% identity, utilizing multiple CPU threads for speed"
mmseqs2,mmseqs2_03,mmseqs2_03_09,informal,"Hey, can you help me fast linear-time clustering of large metagenomic protein set at 50% identity?"
mmseqs2,mmseqs2_03,mmseqs2_03_10,alternative,Perform: fast linear-time clustering of large metagenomic protein set at 50% identity
mmseqs2,mmseqs2_04,mmseqs2_04_01,original,build an MMseqs2 database from a FASTA file
mmseqs2,mmseqs2_04,mmseqs2_04_02,beginner,How do I build an MMseqs2 database from a FASTA file?
mmseqs2,mmseqs2_04,mmseqs2_04_03,student,I need to build an MMseqs2 database from a FASTA file
mmseqs2,mmseqs2_04,mmseqs2_04_04,polite,Please build an MMseqs2 database from a FASTA file
mmseqs2,mmseqs2_04,mmseqs2_04_05,sysadmin,Use mmseqs2 to build an MMseqs2 database from a FASTA file
mmseqs2,mmseqs2_04,mmseqs2_04_06,goal_oriented,I want to build an MMseqs2 database from a FASTA file
mmseqs2,mmseqs2_04,mmseqs2_04_07,expert,build MMseqs2 database FASTA file
mmseqs2,mmseqs2_04,mmseqs2_04_08,detailed,I have data that I need to process: build an MMseqs2 database from a FASTA file
mmseqs2,mmseqs2_04,mmseqs2_04_09,informal,"Hey, can you help me build an MMseqs2 database from a FASTA file?"
mmseqs2,mmseqs2_04,mmseqs2_04_10,alternative,Perform: build an MMseqs2 database from a FASTA file
mmseqs2,mmseqs2_05,mmseqs2_05_01,original,search one MMseqs2 DB against another and convert results to TSV
mmseqs2,mmseqs2_05,mmseqs2_05_02,beginner,How do I search one MMseqs2 DB against another and convert results to TSV?
mmseqs2,mmseqs2_05,mmseqs2_05_03,student,I need to search one MMseqs2 DB against another and convert results to TSV
mmseqs2,mmseqs2_05,mmseqs2_05_04,polite,Please search one MMseqs2 DB against another and convert results to TSV
mmseqs2,mmseqs2_05,mmseqs2_05_05,sysadmin,Use mmseqs2 to search one MMseqs2 DB against another and convert results to TSV
mmseqs2,mmseqs2_05,mmseqs2_05_06,goal_oriented,I want to search one MMseqs2 DB against another and convert results to TSV
mmseqs2,mmseqs2_05,mmseqs2_05_07,expert,search one MMseqs2 DB against another convert results TSV
mmseqs2,mmseqs2_05,mmseqs2_05_08,detailed,"I have data that I need to process: search one MMseqs2 DB against another and convert results to TSV, utilizing multiple CPU threads for speed"
mmseqs2,mmseqs2_05,mmseqs2_05_09,informal,"Hey, can you help me search one MMseqs2 DB against another and convert results to TSV?"
mmseqs2,mmseqs2_05,mmseqs2_05_10,alternative,Convert results to TSV after search one MMseqs2 DB against another
mmseqs2,mmseqs2_06,mmseqs2_06_01,original,extract representative sequences from a cluster result
mmseqs2,mmseqs2_06,mmseqs2_06_02,beginner,How do I extract representative sequences from a cluster result?
mmseqs2,mmseqs2_06,mmseqs2_06_03,student,I need to extract representative sequences from a cluster result
mmseqs2,mmseqs2_06,mmseqs2_06_04,polite,Please extract representative sequences from a cluster result
mmseqs2,mmseqs2_06,mmseqs2_06_05,sysadmin,Use mmseqs2 to extract representative sequences from a cluster result
mmseqs2,mmseqs2_06,mmseqs2_06_06,goal_oriented,I want to extract representative sequences from a cluster result
mmseqs2,mmseqs2_06,mmseqs2_06_07,expert,extract representative sequences cluster result
mmseqs2,mmseqs2_06,mmseqs2_06_08,detailed,I have data that I need to process: extract representative sequences from a cluster result
mmseqs2,mmseqs2_06,mmseqs2_06_09,informal,"Hey, can you help me extract representative sequences from a cluster result?"
mmseqs2,mmseqs2_06,mmseqs2_06_10,alternative,Perform: extract representative sequences from a cluster result
mmseqs2,mmseqs2_07,mmseqs2_07_01,original,perform translated nucleotide-to-protein search
mmseqs2,mmseqs2_07,mmseqs2_07_02,beginner,How do I perform translated nucleotide-to-protein search?
mmseqs2,mmseqs2_07,mmseqs2_07_03,student,I need to perform translated nucleotide-to-protein search
mmseqs2,mmseqs2_07,mmseqs2_07_04,polite,Please perform translated nucleotide-to-protein search
mmseqs2,mmseqs2_07,mmseqs2_07_05,sysadmin,Use mmseqs2 to perform translated nucleotide-to-protein search
mmseqs2,mmseqs2_07,mmseqs2_07_06,goal_oriented,I want to perform translated nucleotide-to-protein search
mmseqs2,mmseqs2_07,mmseqs2_07_07,expert,perform translated nucleotide-to-protein search
mmseqs2,mmseqs2_07,mmseqs2_07_08,detailed,"I have data that I need to process: perform translated nucleotide-to-protein search, utilizing multiple CPU threads for speed"
mmseqs2,mmseqs2_07,mmseqs2_07_09,informal,"Hey, can you help me perform translated nucleotide-to-protein search?"
mmseqs2,mmseqs2_07,mmseqs2_07_10,alternative,Perform: perform translated nucleotide-to-protein search
mmseqs2,mmseqs2_08,mmseqs2_08_01,original,search protein FASTA against UniRef50 and output BLAST tabular results and write output to a file
mmseqs2,mmseqs2_08,mmseqs2_08_02,beginner,How do I search protein FASTA against UniRef50 and output BLAST tabular results and write output to a file?
mmseqs2,mmseqs2_08,mmseqs2_08_03,student,I need to search protein FASTA against UniRef50 and output BLAST tabular results and write output to a file
mmseqs2,mmseqs2_08,mmseqs2_08_04,polite,Please search protein FASTA against UniRef50 and output BLAST tabular results and write output to a file
mmseqs2,mmseqs2_08,mmseqs2_08_05,sysadmin,Use mmseqs2 to search protein FASTA against UniRef50 and output BLAST tabular results and write output to a file
mmseqs2,mmseqs2_08,mmseqs2_08_06,goal_oriented,I want to search protein FASTA against UniRef50 and output BLAST tabular results and write output to a file
mmseqs2,mmseqs2_08,mmseqs2_08_07,expert,search protein FASTA against UniRef50 output BLAST tabular results write output file
mmseqs2,mmseqs2_08,mmseqs2_08_08,detailed,"I have data that I need to process: search protein FASTA against UniRef50 and output BLAST tabular results and write output to a file, utilizing multiple CPU threads for speed, saving the result to a specified output file"
mmseqs2,mmseqs2_08,mmseqs2_08_09,informal,"Hey, can you help me search protein FASTA against UniRef50 and output BLAST tabular results and write output to a file?"
mmseqs2,mmseqs2_08,mmseqs2_08_10,alternative,Output BLAST tabular results and write output to a file after search protein FASTA against UniRef50
mmseqs2,mmseqs2_09,mmseqs2_09_01,original,cluster protein sequences at 90% identity in quiet mode
mmseqs2,mmseqs2_09,mmseqs2_09_02,beginner,How do I cluster protein sequences at 90% identity in quiet mode?
mmseqs2,mmseqs2_09,mmseqs2_09_03,student,I need to cluster protein sequences at 90% identity in quiet mode
mmseqs2,mmseqs2_09,mmseqs2_09_04,polite,Please cluster protein sequences at 90% identity in quiet mode
mmseqs2,mmseqs2_09,mmseqs2_09_05,sysadmin,Use mmseqs2 to cluster protein sequences at 90% identity in quiet mode
mmseqs2,mmseqs2_09,mmseqs2_09_06,goal_oriented,I want to cluster protein sequences at 90% identity in quiet mode
mmseqs2,mmseqs2_09,mmseqs2_09_07,expert,cluster protein sequences at 90% identity quiet mode
mmseqs2,mmseqs2_09,mmseqs2_09_08,detailed,"I have data that I need to process: cluster protein sequences at 90% identity in quiet mode, utilizing multiple CPU threads for speed"
mmseqs2,mmseqs2_09,mmseqs2_09_09,informal,"Hey, can you help me cluster protein sequences at 90% identity in quiet mode?"
mmseqs2,mmseqs2_09,mmseqs2_09_10,alternative,Perform: cluster protein sequences at 90% identity in quiet mode
mmseqs2,mmseqs2_10,mmseqs2_10_01,original,fast linear-time clustering of large metagenomic protein set at 50% identity with default parameters
mmseqs2,mmseqs2_10,mmseqs2_10_02,beginner,How do I fast linear-time clustering of large metagenomic protein set at 50% identity with default parameters?
mmseqs2,mmseqs2_10,mmseqs2_10_03,student,I need to fast linear-time clustering of large metagenomic protein set at 50% identity with default parameters
mmseqs2,mmseqs2_10,mmseqs2_10_04,polite,Please fast linear-time clustering of large metagenomic protein set at 50% identity with default parameters
mmseqs2,mmseqs2_10,mmseqs2_10_05,sysadmin,Use mmseqs2 to fast linear-time clustering of large metagenomic protein set at 50% identity with default parameters
mmseqs2,mmseqs2_10,mmseqs2_10_06,goal_oriented,I want to fast linear-time clustering of large metagenomic protein set at 50% identity with default parameters
mmseqs2,mmseqs2_10,mmseqs2_10_07,expert,fast linear-time clustering of large metagenomic protein set at 50% identity default parameters
mmseqs2,mmseqs2_10,mmseqs2_10_08,detailed,"I have data that I need to process: fast linear-time clustering of large metagenomic protein set at 50% identity with default parameters, utilizing multiple CPU threads for speed"
mmseqs2,mmseqs2_10,mmseqs2_10_09,informal,"Hey, can you help me fast linear-time clustering of large metagenomic protein set at 50% identity with default parameters?"
mmseqs2,mmseqs2_10,mmseqs2_10_10,alternative,"With default parameters, fast linear-time clustering of large metagenomic protein set at 50% identity"
modkit,modkit_01,modkit_01_01,original,generate a bedMethyl pileup of 5mC methylation from a BAM file
modkit,modkit_01,modkit_01_02,beginner,How do I generate a bedMethyl pileup of 5mC methylation from a BAM file?
modkit,modkit_01,modkit_01_03,student,I need to generate a bedMethyl pileup of 5mC methylation from a BAM file
modkit,modkit_01,modkit_01_04,polite,Please generate a bedMethyl pileup of 5mC methylation from a BAM file
modkit,modkit_01,modkit_01_05,sysadmin,Use modkit to generate a bedMethyl pileup of 5mC methylation from a BAM file
modkit,modkit_01,modkit_01_06,goal_oriented,I want to generate a bedMethyl pileup of 5mC methylation from a BAM file
modkit,modkit_01,modkit_01_07,expert,generate bedMethyl pileup of 5mC methylation BAM file
modkit,modkit_01,modkit_01_08,detailed,"I have data that I need to process: generate a bedMethyl pileup of 5mC methylation from a BAM file, utilizing multiple CPU threads for speed"
modkit,modkit_01,modkit_01_09,informal,"Hey, can you help me generate a bedMethyl pileup of 5mC methylation from a BAM file?"
modkit,modkit_01,modkit_01_10,alternative,Perform: generate a bedMethyl pileup of 5mC methylation from a BAM file
modkit,modkit_02,modkit_02_01,original,generate bedMethyl and combine CpG sites on both strands
modkit,modkit_02,modkit_02_02,beginner,How do I generate bedMethyl and combine CpG sites on both strands?
modkit,modkit_02,modkit_02_03,student,I need to generate bedMethyl and combine CpG sites on both strands
modkit,modkit_02,modkit_02_04,polite,Please generate bedMethyl and combine CpG sites on both strands
modkit,modkit_02,modkit_02_05,sysadmin,Use modkit to generate bedMethyl and combine CpG sites on both strands
modkit,modkit_02,modkit_02_06,goal_oriented,I want to generate bedMethyl and combine CpG sites on both strands
modkit,modkit_02,modkit_02_07,expert,generate bedMethyl combine CpG sites on both strands
modkit,modkit_02,modkit_02_08,detailed,"I have data that I need to process: generate bedMethyl and combine CpG sites on both strands, utilizing multiple CPU threads for speed"
modkit,modkit_02,modkit_02_09,informal,"Hey, can you help me generate bedMethyl and combine CpG sites on both strands?"
modkit,modkit_02,modkit_02_10,alternative,Combine CpG sites on both strands after generate bedMethyl
modkit,modkit_03,modkit_03_01,original,extract per-read modification data to TSV
modkit,modkit_03,modkit_03_02,beginner,How do I extract per-read modification data to TSV?
modkit,modkit_03,modkit_03_03,student,I need to extract per-read modification data to TSV
modkit,modkit_03,modkit_03_04,polite,Please extract per-read modification data to TSV
modkit,modkit_03,modkit_03_05,sysadmin,Use modkit to extract per-read modification data to TSV
modkit,modkit_03,modkit_03_06,goal_oriented,I want to extract per-read modification data to TSV
modkit,modkit_03,modkit_03_07,expert,extract per-read modification data TSV
modkit,modkit_03,modkit_03_08,detailed,"I have data that I need to process: extract per-read modification data to TSV, utilizing multiple CPU threads for speed"
modkit,modkit_03,modkit_03_09,informal,"Hey, can you help me extract per-read modification data to TSV?"
modkit,modkit_03,modkit_03_10,alternative,Output TSV by performing: extract per-read modification data
modkit,modkit_04,modkit_04_01,original,get a summary of modification calls in a BAM
modkit,modkit_04,modkit_04_02,beginner,How do I get a summary of modification calls in a BAM?
modkit,modkit_04,modkit_04_03,student,I need to get a summary of modification calls in a BAM
modkit,modkit_04,modkit_04_04,polite,Please get a summary of modification calls in a BAM
modkit,modkit_04,modkit_04_05,sysadmin,Use modkit to get a summary of modification calls in a BAM
modkit,modkit_04,modkit_04_06,goal_oriented,I want to get a summary of modification calls in a BAM
modkit,modkit_04,modkit_04_07,expert,get summary of modification calls BAM
modkit,modkit_04,modkit_04_08,detailed,"I have data that I need to process: get a summary of modification calls in a BAM, utilizing multiple CPU threads for speed"
modkit,modkit_04,modkit_04_09,informal,"Hey, can you help me get a summary of modification calls in a BAM?"
modkit,modkit_04,modkit_04_10,alternative,Perform: get a summary of modification calls in a BAM
modkit,modkit_05,modkit_05_01,original,generate a BED file of all CpG positions in a reference for use as motif targets
modkit,modkit_05,modkit_05_02,beginner,How do I generate a BED file of all CpG positions in a reference for use as motif targets?
modkit,modkit_05,modkit_05_03,student,I need to generate a BED file of all CpG positions in a reference for use as motif targets
modkit,modkit_05,modkit_05_04,polite,Please generate a BED file of all CpG positions in a reference for use as motif targets
modkit,modkit_05,modkit_05_05,sysadmin,Use modkit to generate a BED file of all CpG positions in a reference for use as motif targets
modkit,modkit_05,modkit_05_06,goal_oriented,I want to generate a BED file of all CpG positions in a reference for use as motif targets
modkit,modkit_05,modkit_05_07,expert,generate BED file of all CpG positions reference use as motif targets
modkit,modkit_05,modkit_05_08,detailed,I have data that I need to process: generate a BED file of all CpG positions in a reference for use as motif targets
modkit,modkit_05,modkit_05_09,informal,"Hey, can you help me generate a BED file of all CpG positions in a reference for use as motif targets?"
modkit,modkit_05,modkit_05_10,alternative,Perform: generate a BED file of all CpG positions in a reference for use as motif targets
modkit,modkit_06,modkit_06_01,original,pileup restricted to a specific genomic region
modkit,modkit_06,modkit_06_02,beginner,How do I pileup restricted to a specific genomic region?
modkit,modkit_06,modkit_06_03,student,I need to pileup restricted to a specific genomic region
modkit,modkit_06,modkit_06_04,polite,Please pileup restricted to a specific genomic region
modkit,modkit_06,modkit_06_05,sysadmin,Use modkit to pileup restricted to a specific genomic region
modkit,modkit_06,modkit_06_06,goal_oriented,I want to pileup restricted to a specific genomic region
modkit,modkit_06,modkit_06_07,expert,pileup restricted specific genomic region
modkit,modkit_06,modkit_06_08,detailed,"I have data that I need to process: pileup restricted to a specific genomic region, utilizing multiple CPU threads for speed"
modkit,modkit_06,modkit_06_09,informal,"Hey, can you help me pileup restricted to a specific genomic region?"
modkit,modkit_06,modkit_06_10,alternative,Output a specific genomic region by performing: pileup restricted
modkit,modkit_07,modkit_07_01,original,sample modification probabilities to assess threshold distribution
modkit,modkit_07,modkit_07_02,beginner,How do I sample modification probabilities to assess threshold distribution?
modkit,modkit_07,modkit_07_03,student,I need to sample modification probabilities to assess threshold distribution
modkit,modkit_07,modkit_07_04,polite,Please sample modification probabilities to assess threshold distribution
modkit,modkit_07,modkit_07_05,sysadmin,Use modkit to sample modification probabilities to assess threshold distribution
modkit,modkit_07,modkit_07_06,goal_oriented,I want to sample modification probabilities to assess threshold distribution
modkit,modkit_07,modkit_07_07,expert,sample modification probabilities assess threshold distribution
modkit,modkit_07,modkit_07_08,detailed,"I have data that I need to process: sample modification probabilities to assess threshold distribution, utilizing multiple CPU threads for speed"
modkit,modkit_07,modkit_07_09,informal,"Hey, can you help me sample modification probabilities to assess threshold distribution?"
modkit,modkit_07,modkit_07_10,alternative,Output assess threshold distribution by performing: sample modification probabilities
modkit,modkit_08,modkit_08_01,original,generate a bedMethyl pileup of 5mC methylation from a BAM file and write output to a file
modkit,modkit_08,modkit_08_02,beginner,How do I generate a bedMethyl pileup of 5mC methylation from a BAM file and write output to a file?
modkit,modkit_08,modkit_08_03,student,I need to generate a bedMethyl pileup of 5mC methylation from a BAM file and write output to a file
modkit,modkit_08,modkit_08_04,polite,Please generate a bedMethyl pileup of 5mC methylation from a BAM file and write output to a file
modkit,modkit_08,modkit_08_05,sysadmin,Use modkit to generate a bedMethyl pileup of 5mC methylation from a BAM file and write output to a file
modkit,modkit_08,modkit_08_06,goal_oriented,I want to generate a bedMethyl pileup of 5mC methylation from a BAM file and write output to a file
modkit,modkit_08,modkit_08_07,expert,generate bedMethyl pileup of 5mC methylation BAM file write output file
modkit,modkit_08,modkit_08_08,detailed,"I have data that I need to process: generate a bedMethyl pileup of 5mC methylation from a BAM file and write output to a file, utilizing multiple CPU threads for speed, saving the result to a specified output file"
modkit,modkit_08,modkit_08_09,informal,"Hey, can you help me generate a bedMethyl pileup of 5mC methylation from a BAM file and write output to a file?"
modkit,modkit_08,modkit_08_10,alternative,Write output to a file after generate a bedMethyl pileup of 5mC methylation from a BAM file
modkit,modkit_09,modkit_09_01,original,generate bedMethyl and combine CpG sites on both strands in quiet mode
modkit,modkit_09,modkit_09_02,beginner,How do I generate bedMethyl and combine CpG sites on both strands in quiet mode?
modkit,modkit_09,modkit_09_03,student,I need to generate bedMethyl and combine CpG sites on both strands in quiet mode
modkit,modkit_09,modkit_09_04,polite,Please generate bedMethyl and combine CpG sites on both strands in quiet mode
modkit,modkit_09,modkit_09_05,sysadmin,Use modkit to generate bedMethyl and combine CpG sites on both strands in quiet mode
modkit,modkit_09,modkit_09_06,goal_oriented,I want to generate bedMethyl and combine CpG sites on both strands in quiet mode
modkit,modkit_09,modkit_09_07,expert,generate bedMethyl combine CpG sites on both strands quiet mode
modkit,modkit_09,modkit_09_08,detailed,"I have data that I need to process: generate bedMethyl and combine CpG sites on both strands in quiet mode, utilizing multiple CPU threads for speed"
modkit,modkit_09,modkit_09_09,informal,"Hey, can you help me generate bedMethyl and combine CpG sites on both strands in quiet mode?"
modkit,modkit_09,modkit_09_10,alternative,Combine CpG sites on both strands in quiet mode after generate bedMethyl
modkit,modkit_10,modkit_10_01,original,extract per-read modification data to TSV with default parameters
modkit,modkit_10,modkit_10_02,beginner,How do I extract per-read modification data to TSV with default parameters?
modkit,modkit_10,modkit_10_03,student,I need to extract per-read modification data to TSV with default parameters
modkit,modkit_10,modkit_10_04,polite,Please extract per-read modification data to TSV with default parameters
modkit,modkit_10,modkit_10_05,sysadmin,Use modkit to extract per-read modification data to TSV with default parameters
modkit,modkit_10,modkit_10_06,goal_oriented,I want to extract per-read modification data to TSV with default parameters
modkit,modkit_10,modkit_10_07,expert,extract per-read modification data TSV default parameters
modkit,modkit_10,modkit_10_08,detailed,"I have data that I need to process: extract per-read modification data to TSV with default parameters, utilizing multiple CPU threads for speed"
modkit,modkit_10,modkit_10_09,informal,"Hey, can you help me extract per-read modification data to TSV with default parameters?"
modkit,modkit_10,modkit_10_10,alternative,"With default parameters, extract per-read modification data to TSV"
mosdepth,mosdepth_01,mosdepth_01_01,original,calculate genome-wide depth of coverage in 500bp windows
mosdepth,mosdepth_01,mosdepth_01_02,beginner,How do I calculate genome-wide depth of coverage in 500bp windows?
mosdepth,mosdepth_01,mosdepth_01_03,student,I need to calculate genome-wide depth of coverage in 500bp windows
mosdepth,mosdepth_01,mosdepth_01_04,polite,Please calculate genome-wide depth of coverage in 500bp windows
mosdepth,mosdepth_01,mosdepth_01_05,sysadmin,Use mosdepth to calculate genome-wide depth of coverage in 500bp windows
mosdepth,mosdepth_01,mosdepth_01_06,goal_oriented,I want to calculate genome-wide depth of coverage in 500bp windows
mosdepth,mosdepth_01,mosdepth_01_07,expert,calculate genome-wide depth of coverage 500bp windows
mosdepth,mosdepth_01,mosdepth_01_08,detailed,"I have data that I need to process: calculate genome-wide depth of coverage in 500bp windows, utilizing multiple CPU threads for speed"
mosdepth,mosdepth_01,mosdepth_01_09,informal,"Hey, can you help me calculate genome-wide depth of coverage in 500bp windows?"
mosdepth,mosdepth_01,mosdepth_01_10,alternative,Perform: calculate genome-wide depth of coverage in 500bp windows
mosdepth,mosdepth_02,mosdepth_02_01,original,calculate coverage over target regions for WES
mosdepth,mosdepth_02,mosdepth_02_02,beginner,How do I calculate coverage over target regions for WES?
mosdepth,mosdepth_02,mosdepth_02_03,student,I need to calculate coverage over target regions for WES
mosdepth,mosdepth_02,mosdepth_02_04,polite,Please calculate coverage over target regions for WES
mosdepth,mosdepth_02,mosdepth_02_05,sysadmin,Use mosdepth to calculate coverage over target regions for WES
mosdepth,mosdepth_02,mosdepth_02_06,goal_oriented,I want to calculate coverage over target regions for WES
mosdepth,mosdepth_02,mosdepth_02_07,expert,calculate coverage over target regions WES
mosdepth,mosdepth_02,mosdepth_02_08,detailed,"I have data that I need to process: calculate coverage over target regions for WES, utilizing multiple CPU threads for speed"
mosdepth,mosdepth_02,mosdepth_02_09,informal,"Hey, can you help me calculate coverage over target regions for WES?"
mosdepth,mosdepth_02,mosdepth_02_10,alternative,Perform: calculate coverage over target regions for WES
mosdepth,mosdepth_03,mosdepth_03_01,original,calculate per-base depth with MAPQ filter
mosdepth,mosdepth_03,mosdepth_03_02,beginner,How do I calculate per-base depth with MAPQ filter?
mosdepth,mosdepth_03,mosdepth_03_03,student,I need to calculate per-base depth with MAPQ filter
mosdepth,mosdepth_03,mosdepth_03_04,polite,Please calculate per-base depth with MAPQ filter
mosdepth,mosdepth_03,mosdepth_03_05,sysadmin,Use mosdepth to calculate per-base depth with MAPQ filter
mosdepth,mosdepth_03,mosdepth_03_06,goal_oriented,I want to calculate per-base depth with MAPQ filter
mosdepth,mosdepth_03,mosdepth_03_07,expert,calculate per-base depth MAPQ filter
mosdepth,mosdepth_03,mosdepth_03_08,detailed,"I have data that I need to process: calculate per-base depth with MAPQ filter, utilizing multiple CPU threads for speed"
mosdepth,mosdepth_03,mosdepth_03_09,informal,"Hey, can you help me calculate per-base depth with MAPQ filter?"
mosdepth,mosdepth_03,mosdepth_03_10,alternative,"With MAPQ filter, calculate per-base depth"
mosdepth,mosdepth_04,mosdepth_04_01,original,get summary statistics only without per-base output
mosdepth,mosdepth_04,mosdepth_04_02,beginner,How do I get summary statistics only without per-base output?
mosdepth,mosdepth_04,mosdepth_04_03,student,I need to get summary statistics only without per-base output
mosdepth,mosdepth_04,mosdepth_04_04,polite,Please get summary statistics only without per-base output
mosdepth,mosdepth_04,mosdepth_04_05,sysadmin,Use mosdepth to get summary statistics only without per-base output
mosdepth,mosdepth_04,mosdepth_04_06,goal_oriented,I want to get summary statistics only without per-base output
mosdepth,mosdepth_04,mosdepth_04_07,expert,get summary statistics only without per-base output
mosdepth,mosdepth_04,mosdepth_04_08,detailed,"I have data that I need to process: get summary statistics only without per-base output, utilizing multiple CPU threads for speed"
mosdepth,mosdepth_04,mosdepth_04_09,informal,"Hey, can you help me get summary statistics only without per-base output?"
mosdepth,mosdepth_04,mosdepth_04_10,alternative,Perform: get summary statistics only without per-base output
mosdepth,mosdepth_05,mosdepth_05_01,original,calculate genome-wide depth of coverage in 500bp windows with default parameters
mosdepth,mosdepth_05,mosdepth_05_02,beginner,How do I calculate genome-wide depth of coverage in 500bp windows with default parameters?
mosdepth,mosdepth_05,mosdepth_05_03,student,I need to calculate genome-wide depth of coverage in 500bp windows with default parameters
mosdepth,mosdepth_05,mosdepth_05_04,polite,Please calculate genome-wide depth of coverage in 500bp windows with default parameters
mosdepth,mosdepth_05,mosdepth_05_05,sysadmin,Use mosdepth to calculate genome-wide depth of coverage in 500bp windows with default parameters
mosdepth,mosdepth_05,mosdepth_05_06,goal_oriented,I want to calculate genome-wide depth of coverage in 500bp windows with default parameters
mosdepth,mosdepth_05,mosdepth_05_07,expert,calculate genome-wide depth of coverage 500bp windows default parameters
mosdepth,mosdepth_05,mosdepth_05_08,detailed,"I have data that I need to process: calculate genome-wide depth of coverage in 500bp windows with default parameters, utilizing multiple CPU threads for speed"
mosdepth,mosdepth_05,mosdepth_05_09,informal,"Hey, can you help me calculate genome-wide depth of coverage in 500bp windows with default parameters?"
mosdepth,mosdepth_05,mosdepth_05_10,alternative,"With default parameters, calculate genome-wide depth of coverage in 500bp windows"
mosdepth,mosdepth_06,mosdepth_06_01,original,calculate coverage over target regions for WES with verbose output
mosdepth,mosdepth_06,mosdepth_06_02,beginner,How do I calculate coverage over target regions for WES with verbose output?
mosdepth,mosdepth_06,mosdepth_06_03,student,I need to calculate coverage over target regions for WES with verbose output
mosdepth,mosdepth_06,mosdepth_06_04,polite,Please calculate coverage over target regions for WES with verbose output
mosdepth,mosdepth_06,mosdepth_06_05,sysadmin,Use mosdepth to calculate coverage over target regions for WES with verbose output
mosdepth,mosdepth_06,mosdepth_06_06,goal_oriented,I want to calculate coverage over target regions for WES with verbose output
mosdepth,mosdepth_06,mosdepth_06_07,expert,calculate coverage over target regions WES verbose output
mosdepth,mosdepth_06,mosdepth_06_08,detailed,"I have data that I need to process: calculate coverage over target regions for WES with verbose output, utilizing multiple CPU threads for speed"
mosdepth,mosdepth_06,mosdepth_06_09,informal,"Hey, can you help me calculate coverage over target regions for WES with verbose output?"
mosdepth,mosdepth_06,mosdepth_06_10,alternative,"With verbose output, calculate coverage over target regions for WES"
mosdepth,mosdepth_07,mosdepth_07_01,original,calculate per-base depth with MAPQ filter using multiple threads
mosdepth,mosdepth_07,mosdepth_07_02,beginner,How do I calculate per-base depth with MAPQ filter using multiple threads?
mosdepth,mosdepth_07,mosdepth_07_03,student,I need to calculate per-base depth with MAPQ filter using multiple threads
mosdepth,mosdepth_07,mosdepth_07_04,polite,Please calculate per-base depth with MAPQ filter using multiple threads
mosdepth,mosdepth_07,mosdepth_07_05,sysadmin,Use mosdepth to calculate per-base depth with MAPQ filter using multiple threads
mosdepth,mosdepth_07,mosdepth_07_06,goal_oriented,I want to calculate per-base depth with MAPQ filter using multiple threads
mosdepth,mosdepth_07,mosdepth_07_07,expert,calculate per-base depth MAPQ filter multiple threads
mosdepth,mosdepth_07,mosdepth_07_08,detailed,"I have data that I need to process: calculate per-base depth with MAPQ filter using multiple threads, utilizing multiple CPU threads for speed"
mosdepth,mosdepth_07,mosdepth_07_09,informal,"Hey, can you help me calculate per-base depth with MAPQ filter using multiple threads?"
mosdepth,mosdepth_07,mosdepth_07_10,alternative,"With MAPQ filter using multiple threads, calculate per-base depth"
mosdepth,mosdepth_08,mosdepth_08_01,original,get summary statistics only without per-base output and write output to a file
mosdepth,mosdepth_08,mosdepth_08_02,beginner,How do I get summary statistics only without per-base output and write output to a file?
mosdepth,mosdepth_08,mosdepth_08_03,student,I need to get summary statistics only without per-base output and write output to a file
mosdepth,mosdepth_08,mosdepth_08_04,polite,Please get summary statistics only without per-base output and write output to a file
mosdepth,mosdepth_08,mosdepth_08_05,sysadmin,Use mosdepth to get summary statistics only without per-base output and write output to a file
mosdepth,mosdepth_08,mosdepth_08_06,goal_oriented,I want to get summary statistics only without per-base output and write output to a file
mosdepth,mosdepth_08,mosdepth_08_07,expert,get summary statistics only without per-base output write output file
mosdepth,mosdepth_08,mosdepth_08_08,detailed,"I have data that I need to process: get summary statistics only without per-base output and write output to a file, utilizing multiple CPU threads for speed, saving the result to a specified output file"
mosdepth,mosdepth_08,mosdepth_08_09,informal,"Hey, can you help me get summary statistics only without per-base output and write output to a file?"
mosdepth,mosdepth_08,mosdepth_08_10,alternative,Write output to a file after get summary statistics only without per-base output
mosdepth,mosdepth_09,mosdepth_09_01,original,calculate genome-wide depth of coverage in 500bp windows in quiet mode
mosdepth,mosdepth_09,mosdepth_09_02,beginner,How do I calculate genome-wide depth of coverage in 500bp windows in quiet mode?
mosdepth,mosdepth_09,mosdepth_09_03,student,I need to calculate genome-wide depth of coverage in 500bp windows in quiet mode
mosdepth,mosdepth_09,mosdepth_09_04,polite,Please calculate genome-wide depth of coverage in 500bp windows in quiet mode
mosdepth,mosdepth_09,mosdepth_09_05,sysadmin,Use mosdepth to calculate genome-wide depth of coverage in 500bp windows in quiet mode
mosdepth,mosdepth_09,mosdepth_09_06,goal_oriented,I want to calculate genome-wide depth of coverage in 500bp windows in quiet mode
mosdepth,mosdepth_09,mosdepth_09_07,expert,calculate genome-wide depth of coverage 500bp windows quiet mode
mosdepth,mosdepth_09,mosdepth_09_08,detailed,"I have data that I need to process: calculate genome-wide depth of coverage in 500bp windows in quiet mode, utilizing multiple CPU threads for speed"
mosdepth,mosdepth_09,mosdepth_09_09,informal,"Hey, can you help me calculate genome-wide depth of coverage in 500bp windows in quiet mode?"
mosdepth,mosdepth_09,mosdepth_09_10,alternative,Perform: calculate genome-wide depth of coverage in 500bp windows in quiet mode
mosdepth,mosdepth_10,mosdepth_10_01,original,calculate coverage over target regions for WES with default parameters
mosdepth,mosdepth_10,mosdepth_10_02,beginner,How do I calculate coverage over target regions for WES with default parameters?
mosdepth,mosdepth_10,mosdepth_10_03,student,I need to calculate coverage over target regions for WES with default parameters
mosdepth,mosdepth_10,mosdepth_10_04,polite,Please calculate coverage over target regions for WES with default parameters
mosdepth,mosdepth_10,mosdepth_10_05,sysadmin,Use mosdepth to calculate coverage over target regions for WES with default parameters
mosdepth,mosdepth_10,mosdepth_10_06,goal_oriented,I want to calculate coverage over target regions for WES with default parameters
mosdepth,mosdepth_10,mosdepth_10_07,expert,calculate coverage over target regions WES default parameters
mosdepth,mosdepth_10,mosdepth_10_08,detailed,"I have data that I need to process: calculate coverage over target regions for WES with default parameters, utilizing multiple CPU threads for speed"
mosdepth,mosdepth_10,mosdepth_10_09,informal,"Hey, can you help me calculate coverage over target regions for WES with default parameters?"
mosdepth,mosdepth_10,mosdepth_10_10,alternative,"With default parameters, calculate coverage over target regions for WES"
multiqc,multiqc_01,multiqc_01_01,original,aggregate all QC results from the current directory into a single report
multiqc,multiqc_01,multiqc_01_02,beginner,How do I aggregate all QC results from the current directory into a single report?
multiqc,multiqc_01,multiqc_01_03,student,I need to aggregate all QC results from the current directory into a single report
multiqc,multiqc_01,multiqc_01_04,polite,Please aggregate all QC results from the current directory into a single report
multiqc,multiqc_01,multiqc_01_05,sysadmin,Use multiqc to aggregate all QC results from the current directory into a single report
multiqc,multiqc_01,multiqc_01_06,goal_oriented,I want to aggregate all QC results from the current directory into a single report
multiqc,multiqc_01,multiqc_01_07,expert,aggregate all QC results current directory single report
multiqc,multiqc_01,multiqc_01_08,detailed,"I have data that I need to process: aggregate all QC results from the current directory into a single report, saving the result to a specified output file"
multiqc,multiqc_01,multiqc_01_09,informal,"Hey, can you help me aggregate all QC results from the current directory into a single report?"
multiqc,multiqc_01,multiqc_01_10,alternative,Perform: aggregate all QC results from the current directory into a single report
multiqc,multiqc_02,multiqc_02_01,original,aggregate QC results from a specific results directory
multiqc,multiqc_02,multiqc_02_02,beginner,How do I aggregate QC results from a specific results directory?
multiqc,multiqc_02,multiqc_02_03,student,I need to aggregate QC results from a specific results directory
multiqc,multiqc_02,multiqc_02_04,polite,Please aggregate QC results from a specific results directory
multiqc,multiqc_02,multiqc_02_05,sysadmin,Use multiqc to aggregate QC results from a specific results directory
multiqc,multiqc_02,multiqc_02_06,goal_oriented,I want to aggregate QC results from a specific results directory
multiqc,multiqc_02,multiqc_02_07,expert,aggregate QC results specific results directory
multiqc,multiqc_02,multiqc_02_08,detailed,"I have data that I need to process: aggregate QC results from a specific results directory, saving the result to a specified output file"
multiqc,multiqc_02,multiqc_02_09,informal,"Hey, can you help me aggregate QC results from a specific results directory?"
multiqc,multiqc_02,multiqc_02_10,alternative,Perform: aggregate QC results from a specific results directory
multiqc,multiqc_03,multiqc_03_01,original,run multiqc ignoring a specific subdirectory
multiqc,multiqc_03,multiqc_03_02,beginner,How do I run multiqc ignoring a specific subdirectory?
multiqc,multiqc_03,multiqc_03_03,student,I need to run multiqc ignoring a specific subdirectory
multiqc,multiqc_03,multiqc_03_04,polite,Please run multiqc ignoring a specific subdirectory
multiqc,multiqc_03,multiqc_03_05,sysadmin,Use multiqc to run multiqc ignoring a specific subdirectory
multiqc,multiqc_03,multiqc_03_06,goal_oriented,I want to run multiqc ignoring a specific subdirectory
multiqc,multiqc_03,multiqc_03_07,expert,run multiqc ignoring specific subdirectory
multiqc,multiqc_03,multiqc_03_08,detailed,"I have data that I need to process: run multiqc ignoring a specific subdirectory, saving the result to a specified output file"
multiqc,multiqc_03,multiqc_03_09,informal,"Hey, can you help me run multiqc ignoring a specific subdirectory?"
multiqc,multiqc_03,multiqc_03_10,alternative,Perform: run multiqc ignoring a specific subdirectory
multiqc,multiqc_04,multiqc_04_01,original,generate a multiqc report with flat (non-interactive) output suitable for PDF
multiqc,multiqc_04,multiqc_04_02,beginner,How do I generate a multiqc report with flat (non-interactive) output suitable for PDF?
multiqc,multiqc_04,multiqc_04_03,student,I need to generate a multiqc report with flat (non-interactive) output suitable for PDF
multiqc,multiqc_04,multiqc_04_04,polite,Please generate a multiqc report with flat (non-interactive) output suitable for PDF
multiqc,multiqc_04,multiqc_04_05,sysadmin,Use multiqc to generate a multiqc report with flat (non-interactive) output suitable for PDF
multiqc,multiqc_04,multiqc_04_06,goal_oriented,I want to generate a multiqc report with flat (non-interactive) output suitable for PDF
multiqc,multiqc_04,multiqc_04_07,expert,generate multiqc report flat (non-interactive) output suitable PDF
multiqc,multiqc_04,multiqc_04_08,detailed,"I have data that I need to process: generate a multiqc report with flat (non-interactive) output suitable for PDF, saving the result to a specified output file"
multiqc,multiqc_04,multiqc_04_09,informal,"Hey, can you help me generate a multiqc report with flat (non-interactive) output suitable for PDF?"
multiqc,multiqc_04,multiqc_04_10,alternative,"With flat (non-interactive) output suitable for PDF, generate a multiqc report"
multiqc,multiqc_05,multiqc_05_01,original,run multiqc on only FastQC and Trimmomatic outputs
multiqc,multiqc_05,multiqc_05_02,beginner,How do I run multiqc on only FastQC and Trimmomatic outputs?
multiqc,multiqc_05,multiqc_05_03,student,I need to run multiqc on only FastQC and Trimmomatic outputs
multiqc,multiqc_05,multiqc_05_04,polite,Please run multiqc on only FastQC and Trimmomatic outputs
multiqc,multiqc_05,multiqc_05_05,sysadmin,Use multiqc to run multiqc on only FastQC and Trimmomatic outputs
multiqc,multiqc_05,multiqc_05_06,goal_oriented,I want to run multiqc on only FastQC and Trimmomatic outputs
multiqc,multiqc_05,multiqc_05_07,expert,run multiqc on only FastQC Trimmomatic outputs
multiqc,multiqc_05,multiqc_05_08,detailed,"I have data that I need to process: run multiqc on only FastQC and Trimmomatic outputs, saving the result to a specified output file"
multiqc,multiqc_05,multiqc_05_09,informal,"Hey, can you help me run multiqc on only FastQC and Trimmomatic outputs?"
multiqc,multiqc_05,multiqc_05_10,alternative,Trimmomatic outputs after run multiqc on only FastQC
multiqc,multiqc_06,multiqc_06_01,original,aggregate all QC results from the current directory into a single report with verbose output
multiqc,multiqc_06,multiqc_06_02,beginner,How do I aggregate all QC results from the current directory into a single report with verbose output?
multiqc,multiqc_06,multiqc_06_03,student,I need to aggregate all QC results from the current directory into a single report with verbose output
multiqc,multiqc_06,multiqc_06_04,polite,Please aggregate all QC results from the current directory into a single report with verbose output
multiqc,multiqc_06,multiqc_06_05,sysadmin,Use multiqc to aggregate all QC results from the current directory into a single report with verbose output
multiqc,multiqc_06,multiqc_06_06,goal_oriented,I want to aggregate all QC results from the current directory into a single report with verbose output
multiqc,multiqc_06,multiqc_06_07,expert,aggregate all QC results current directory single report verbose output
multiqc,multiqc_06,multiqc_06_08,detailed,"I have data that I need to process: aggregate all QC results from the current directory into a single report with verbose output, saving the result to a specified output file"
multiqc,multiqc_06,multiqc_06_09,informal,"Hey, can you help me aggregate all QC results from the current directory into a single report with verbose output?"
multiqc,multiqc_06,multiqc_06_10,alternative,"With verbose output, aggregate all QC results from the current directory into a single report"
multiqc,multiqc_07,multiqc_07_01,original,aggregate QC results from a specific results directory using multiple threads
multiqc,multiqc_07,multiqc_07_02,beginner,How do I aggregate QC results from a specific results directory using multiple threads?
multiqc,multiqc_07,multiqc_07_03,student,I need to aggregate QC results from a specific results directory using multiple threads
multiqc,multiqc_07,multiqc_07_04,polite,Please aggregate QC results from a specific results directory using multiple threads
multiqc,multiqc_07,multiqc_07_05,sysadmin,Use multiqc to aggregate QC results from a specific results directory using multiple threads
multiqc,multiqc_07,multiqc_07_06,goal_oriented,I want to aggregate QC results from a specific results directory using multiple threads
multiqc,multiqc_07,multiqc_07_07,expert,aggregate QC results specific results directory multiple threads
multiqc,multiqc_07,multiqc_07_08,detailed,"I have data that I need to process: aggregate QC results from a specific results directory using multiple threads, utilizing multiple CPU threads for speed, saving the result to a specified output file"
multiqc,multiqc_07,multiqc_07_09,informal,"Hey, can you help me aggregate QC results from a specific results directory using multiple threads?"
multiqc,multiqc_07,multiqc_07_10,alternative,Perform: aggregate QC results from a specific results directory using multiple threads
multiqc,multiqc_08,multiqc_08_01,original,run multiqc ignoring a specific subdirectory and write output to a file
multiqc,multiqc_08,multiqc_08_02,beginner,How do I run multiqc ignoring a specific subdirectory and write output to a file?
multiqc,multiqc_08,multiqc_08_03,student,I need to run multiqc ignoring a specific subdirectory and write output to a file
multiqc,multiqc_08,multiqc_08_04,polite,Please run multiqc ignoring a specific subdirectory and write output to a file
multiqc,multiqc_08,multiqc_08_05,sysadmin,Use multiqc to run multiqc ignoring a specific subdirectory and write output to a file
multiqc,multiqc_08,multiqc_08_06,goal_oriented,I want to run multiqc ignoring a specific subdirectory and write output to a file
multiqc,multiqc_08,multiqc_08_07,expert,run multiqc ignoring specific subdirectory write output file
multiqc,multiqc_08,multiqc_08_08,detailed,"I have data that I need to process: run multiqc ignoring a specific subdirectory and write output to a file, saving the result to a specified output file"
multiqc,multiqc_08,multiqc_08_09,informal,"Hey, can you help me run multiqc ignoring a specific subdirectory and write output to a file?"
multiqc,multiqc_08,multiqc_08_10,alternative,Write output to a file after run multiqc ignoring a specific subdirectory
multiqc,multiqc_09,multiqc_09_01,original,generate a multiqc report with flat (non-interactive) output suitable for PDF in quiet mode
multiqc,multiqc_09,multiqc_09_02,beginner,How do I generate a multiqc report with flat (non-interactive) output suitable for PDF in quiet mode?
multiqc,multiqc_09,multiqc_09_03,student,I need to generate a multiqc report with flat (non-interactive) output suitable for PDF in quiet mode
multiqc,multiqc_09,multiqc_09_04,polite,Please generate a multiqc report with flat (non-interactive) output suitable for PDF in quiet mode
multiqc,multiqc_09,multiqc_09_05,sysadmin,Use multiqc to generate a multiqc report with flat (non-interactive) output suitable for PDF in quiet mode
multiqc,multiqc_09,multiqc_09_06,goal_oriented,I want to generate a multiqc report with flat (non-interactive) output suitable for PDF in quiet mode
multiqc,multiqc_09,multiqc_09_07,expert,generate multiqc report flat (non-interactive) output suitable PDF quiet mode
multiqc,multiqc_09,multiqc_09_08,detailed,"I have data that I need to process: generate a multiqc report with flat (non-interactive) output suitable for PDF in quiet mode, saving the result to a specified output file"
multiqc,multiqc_09,multiqc_09_09,informal,"Hey, can you help me generate a multiqc report with flat (non-interactive) output suitable for PDF in quiet mode?"
multiqc,multiqc_09,multiqc_09_10,alternative,"With flat (non-interactive) output suitable for PDF in quiet mode, generate a multiqc report"
multiqc,multiqc_10,multiqc_10_01,original,run multiqc on only FastQC and Trimmomatic outputs with default parameters
multiqc,multiqc_10,multiqc_10_02,beginner,How do I run multiqc on only FastQC and Trimmomatic outputs with default parameters?
multiqc,multiqc_10,multiqc_10_03,student,I need to run multiqc on only FastQC and Trimmomatic outputs with default parameters
multiqc,multiqc_10,multiqc_10_04,polite,Please run multiqc on only FastQC and Trimmomatic outputs with default parameters
multiqc,multiqc_10,multiqc_10_05,sysadmin,Use multiqc to run multiqc on only FastQC and Trimmomatic outputs with default parameters
multiqc,multiqc_10,multiqc_10_06,goal_oriented,I want to run multiqc on only FastQC and Trimmomatic outputs with default parameters
multiqc,multiqc_10,multiqc_10_07,expert,run multiqc on only FastQC Trimmomatic outputs default parameters
multiqc,multiqc_10,multiqc_10_08,detailed,"I have data that I need to process: run multiqc on only FastQC and Trimmomatic outputs with default parameters, saving the result to a specified output file"
multiqc,multiqc_10,multiqc_10_09,informal,"Hey, can you help me run multiqc on only FastQC and Trimmomatic outputs with default parameters?"
multiqc,multiqc_10,multiqc_10_10,alternative,Trimmomatic outputs with default parameters after run multiqc on only FastQC
mummer,mummer_01,mummer_01_01,original,align a query genome to a reference genome
mummer,mummer_01,mummer_01_02,beginner,How do I align a query genome to a reference genome?
mummer,mummer_01,mummer_01_03,student,I need to align a query genome to a reference genome
mummer,mummer_01,mummer_01_04,polite,Please align a query genome to a reference genome
mummer,mummer_01,mummer_01_05,sysadmin,Use mummer to align a query genome to a reference genome
mummer,mummer_01,mummer_01_06,goal_oriented,I want to align a query genome to a reference genome
mummer,mummer_01,mummer_01_07,expert,align query genome reference genome
mummer,mummer_01,mummer_01_08,detailed,I have data that I need to process: align a query genome to a reference genome
mummer,mummer_01,mummer_01_09,informal,"Hey, can you help me align a query genome to a reference genome?"
mummer,mummer_01,mummer_01_10,alternative,Output a reference genome by performing: align a query genome
mummer,mummer_02,mummer_02_01,original,generate a comprehensive pairwise genome comparison report
mummer,mummer_02,mummer_02_02,beginner,How do I generate a comprehensive pairwise genome comparison report?
mummer,mummer_02,mummer_02_03,student,I need to generate a comprehensive pairwise genome comparison report
mummer,mummer_02,mummer_02_04,polite,Please generate a comprehensive pairwise genome comparison report
mummer,mummer_02,mummer_02_05,sysadmin,Use mummer to generate a comprehensive pairwise genome comparison report
mummer,mummer_02,mummer_02_06,goal_oriented,I want to generate a comprehensive pairwise genome comparison report
mummer,mummer_02,mummer_02_07,expert,generate comprehensive pairwise genome comparison report
mummer,mummer_02,mummer_02_08,detailed,I have data that I need to process: generate a comprehensive pairwise genome comparison report
mummer,mummer_02,mummer_02_09,informal,"Hey, can you help me generate a comprehensive pairwise genome comparison report?"
mummer,mummer_02,mummer_02_10,alternative,Perform: generate a comprehensive pairwise genome comparison report
mummer,mummer_03,mummer_03_01,original,filter alignments to 1-to-1 (unique) and extract SNPs
mummer,mummer_03,mummer_03_02,beginner,How do I filter alignments to 1-to-1 (unique) and extract SNPs?
mummer,mummer_03,mummer_03_03,student,I need to filter alignments to 1-to-1 (unique) and extract SNPs
mummer,mummer_03,mummer_03_04,polite,Please filter alignments to 1-to-1 (unique) and extract SNPs
mummer,mummer_03,mummer_03_05,sysadmin,Use mummer to filter alignments to 1-to-1 (unique) and extract SNPs
mummer,mummer_03,mummer_03_06,goal_oriented,I want to filter alignments to 1-to-1 (unique) and extract SNPs
mummer,mummer_03,mummer_03_07,expert,filter alignments 1-to-1 (unique) extract SNPs
mummer,mummer_03,mummer_03_08,detailed,I have data that I need to process: filter alignments to 1-to-1 (unique) and extract SNPs
mummer,mummer_03,mummer_03_09,informal,"Hey, can you help me filter alignments to 1-to-1 (unique) and extract SNPs?"
mummer,mummer_03,mummer_03_10,alternative,Extract SNPs after filter alignments to 1-to-1 (unique)
mummer,mummer_04,mummer_04_01,original,show alignment coordinates
mummer,mummer_04,mummer_04_02,beginner,How do I show alignment coordinates?
mummer,mummer_04,mummer_04_03,student,I need to show alignment coordinates
mummer,mummer_04,mummer_04_04,polite,Please show alignment coordinates
mummer,mummer_04,mummer_04_05,sysadmin,Use mummer to show alignment coordinates
mummer,mummer_04,mummer_04_06,goal_oriented,I want to show alignment coordinates
mummer,mummer_04,mummer_04_07,expert,show alignment coordinates
mummer,mummer_04,mummer_04_08,detailed,I have data that I need to process: show alignment coordinates
mummer,mummer_04,mummer_04_09,informal,"Hey, can you help me show alignment coordinates?"
mummer,mummer_04,mummer_04_10,alternative,Perform: show alignment coordinates
mummer,mummer_05,mummer_05_01,original,generate a synteny dot-plot image
mummer,mummer_05,mummer_05_02,beginner,How do I generate a synteny dot-plot image?
mummer,mummer_05,mummer_05_03,student,I need to generate a synteny dot-plot image
mummer,mummer_05,mummer_05_04,polite,Please generate a synteny dot-plot image
mummer,mummer_05,mummer_05_05,sysadmin,Use mummer to generate a synteny dot-plot image
mummer,mummer_05,mummer_05_06,goal_oriented,I want to generate a synteny dot-plot image
mummer,mummer_05,mummer_05_07,expert,generate synteny dot-plot image
mummer,mummer_05,mummer_05_08,detailed,I have data that I need to process: generate a synteny dot-plot image
mummer,mummer_05,mummer_05_09,informal,"Hey, can you help me generate a synteny dot-plot image?"
mummer,mummer_05,mummer_05_10,alternative,Perform: generate a synteny dot-plot image
mummer,mummer_06,mummer_06_01,original,compare two genomes with verbose SNP output
mummer,mummer_06,mummer_06_02,beginner,How do I compare two genomes with verbose SNP output?
mummer,mummer_06,mummer_06_03,student,I need to compare two genomes with verbose SNP output
mummer,mummer_06,mummer_06_04,polite,Please compare two genomes with verbose SNP output
mummer,mummer_06,mummer_06_05,sysadmin,Use mummer to compare two genomes with verbose SNP output
mummer,mummer_06,mummer_06_06,goal_oriented,I want to compare two genomes with verbose SNP output
mummer,mummer_06,mummer_06_07,expert,compare two genomes verbose SNP output
mummer,mummer_06,mummer_06_08,detailed,"I have data that I need to process: compare two genomes with verbose SNP output, utilizing multiple CPU threads for speed"
mummer,mummer_06,mummer_06_09,informal,"Hey, can you help me compare two genomes with verbose SNP output?"
mummer,mummer_06,mummer_06_10,alternative,"With verbose SNP output, compare two genomes"
mummer,mummer_07,mummer_07_01,original,align with a custom minimum match length
mummer,mummer_07,mummer_07_02,beginner,How do I align with a custom minimum match length?
mummer,mummer_07,mummer_07_03,student,I need to align with a custom minimum match length
mummer,mummer_07,mummer_07_04,polite,Please align with a custom minimum match length
mummer,mummer_07,mummer_07_05,sysadmin,Use mummer to align with a custom minimum match length
mummer,mummer_07,mummer_07_06,goal_oriented,I want to align with a custom minimum match length
mummer,mummer_07,mummer_07_07,expert,align custom minimum match length
mummer,mummer_07,mummer_07_08,detailed,I have data that I need to process: align with a custom minimum match length
mummer,mummer_07,mummer_07_09,informal,"Hey, can you help me align with a custom minimum match length?"
mummer,mummer_07,mummer_07_10,alternative,"With a custom minimum match length, align"
mummer,mummer_08,mummer_08_01,original,align a query genome to a reference genome and write output to a file
mummer,mummer_08,mummer_08_02,beginner,How do I align a query genome to a reference genome and write output to a file?
mummer,mummer_08,mummer_08_03,student,I need to align a query genome to a reference genome and write output to a file
mummer,mummer_08,mummer_08_04,polite,Please align a query genome to a reference genome and write output to a file
mummer,mummer_08,mummer_08_05,sysadmin,Use mummer to align a query genome to a reference genome and write output to a file
mummer,mummer_08,mummer_08_06,goal_oriented,I want to align a query genome to a reference genome and write output to a file
mummer,mummer_08,mummer_08_07,expert,align query genome reference genome write output file
mummer,mummer_08,mummer_08_08,detailed,"I have data that I need to process: align a query genome to a reference genome and write output to a file, saving the result to a specified output file"
mummer,mummer_08,mummer_08_09,informal,"Hey, can you help me align a query genome to a reference genome and write output to a file?"
mummer,mummer_08,mummer_08_10,alternative,Write output to a file after align a query genome to a reference genome
mummer,mummer_09,mummer_09_01,original,generate a comprehensive pairwise genome comparison report in quiet mode
mummer,mummer_09,mummer_09_02,beginner,How do I generate a comprehensive pairwise genome comparison report in quiet mode?
mummer,mummer_09,mummer_09_03,student,I need to generate a comprehensive pairwise genome comparison report in quiet mode
mummer,mummer_09,mummer_09_04,polite,Please generate a comprehensive pairwise genome comparison report in quiet mode
mummer,mummer_09,mummer_09_05,sysadmin,Use mummer to generate a comprehensive pairwise genome comparison report in quiet mode
mummer,mummer_09,mummer_09_06,goal_oriented,I want to generate a comprehensive pairwise genome comparison report in quiet mode
mummer,mummer_09,mummer_09_07,expert,generate comprehensive pairwise genome comparison report quiet mode
mummer,mummer_09,mummer_09_08,detailed,I have data that I need to process: generate a comprehensive pairwise genome comparison report in quiet mode
mummer,mummer_09,mummer_09_09,informal,"Hey, can you help me generate a comprehensive pairwise genome comparison report in quiet mode?"
mummer,mummer_09,mummer_09_10,alternative,Perform: generate a comprehensive pairwise genome comparison report in quiet mode
mummer,mummer_10,mummer_10_01,original,filter alignments to 1-to-1 (unique) and extract SNPs with default parameters
mummer,mummer_10,mummer_10_02,beginner,How do I filter alignments to 1-to-1 (unique) and extract SNPs with default parameters?
mummer,mummer_10,mummer_10_03,student,I need to filter alignments to 1-to-1 (unique) and extract SNPs with default parameters
mummer,mummer_10,mummer_10_04,polite,Please filter alignments to 1-to-1 (unique) and extract SNPs with default parameters
mummer,mummer_10,mummer_10_05,sysadmin,Use mummer to filter alignments to 1-to-1 (unique) and extract SNPs with default parameters
mummer,mummer_10,mummer_10_06,goal_oriented,I want to filter alignments to 1-to-1 (unique) and extract SNPs with default parameters
mummer,mummer_10,mummer_10_07,expert,filter alignments 1-to-1 (unique) extract SNPs default parameters
mummer,mummer_10,mummer_10_08,detailed,I have data that I need to process: filter alignments to 1-to-1 (unique) and extract SNPs with default parameters
mummer,mummer_10,mummer_10_09,informal,"Hey, can you help me filter alignments to 1-to-1 (unique) and extract SNPs with default parameters?"
mummer,mummer_10,mummer_10_10,alternative,Extract SNPs with default parameters after filter alignments to 1-to-1 (unique)
muscle,muscle_01,muscle_01_01,original,align multiple protein sequences with MUSCLE v5
muscle,muscle_01,muscle_01_02,beginner,How do I align multiple protein sequences with MUSCLE v5?
muscle,muscle_01,muscle_01_03,student,I need to align multiple protein sequences with MUSCLE v5
muscle,muscle_01,muscle_01_04,polite,Please align multiple protein sequences with MUSCLE v5
muscle,muscle_01,muscle_01_05,sysadmin,Use muscle to align multiple protein sequences with MUSCLE v5
muscle,muscle_01,muscle_01_06,goal_oriented,I want to align multiple protein sequences with MUSCLE v5
muscle,muscle_01,muscle_01_07,expert,align multiple protein sequences MUSCLE v5
muscle,muscle_01,muscle_01_08,detailed,I have data that I need to process: align multiple protein sequences with MUSCLE v5
muscle,muscle_01,muscle_01_09,informal,"Hey, can you help me align multiple protein sequences with MUSCLE v5?"
muscle,muscle_01,muscle_01_10,alternative,"With MUSCLE v5, align multiple protein sequences"
muscle,muscle_02,muscle_02_01,original,align a large dataset with MUSCLE v5 super5 mode
muscle,muscle_02,muscle_02_02,beginner,How do I align a large dataset with MUSCLE v5 super5 mode?
muscle,muscle_02,muscle_02_03,student,I need to align a large dataset with MUSCLE v5 super5 mode
muscle,muscle_02,muscle_02_04,polite,Please align a large dataset with MUSCLE v5 super5 mode
muscle,muscle_02,muscle_02_05,sysadmin,Use muscle to align a large dataset with MUSCLE v5 super5 mode
muscle,muscle_02,muscle_02_06,goal_oriented,I want to align a large dataset with MUSCLE v5 super5 mode
muscle,muscle_02,muscle_02_07,expert,align large dataset MUSCLE v5 super5 mode
muscle,muscle_02,muscle_02_08,detailed,I have data that I need to process: align a large dataset with MUSCLE v5 super5 mode
muscle,muscle_02,muscle_02_09,informal,"Hey, can you help me align a large dataset with MUSCLE v5 super5 mode?"
muscle,muscle_02,muscle_02_10,alternative,"With MUSCLE v5 super5 mode, align a large dataset"
muscle,muscle_03,muscle_03_01,original,align sequences with MUSCLE v3 syntax (legacy)
muscle,muscle_03,muscle_03_02,beginner,How do I align sequences with MUSCLE v3 syntax (legacy)?
muscle,muscle_03,muscle_03_03,student,I need to align sequences with MUSCLE v3 syntax (legacy)
muscle,muscle_03,muscle_03_04,polite,Please align sequences with MUSCLE v3 syntax (legacy)
muscle,muscle_03,muscle_03_05,sysadmin,Use muscle to align sequences with MUSCLE v3 syntax (legacy)
muscle,muscle_03,muscle_03_06,goal_oriented,I want to align sequences with MUSCLE v3 syntax (legacy)
muscle,muscle_03,muscle_03_07,expert,align sequences MUSCLE v3 syntax (legacy)
muscle,muscle_03,muscle_03_08,detailed,I have data that I need to process: align sequences with MUSCLE v3 syntax (legacy)
muscle,muscle_03,muscle_03_09,informal,"Hey, can you help me align sequences with MUSCLE v3 syntax (legacy)?"
muscle,muscle_03,muscle_03_10,alternative,"With MUSCLE v3 syntax (legacy), align sequences"
muscle,muscle_04,muscle_04_01,original,generate multiple alignment replicates for uncertainty estimation
muscle,muscle_04,muscle_04_02,beginner,How do I generate multiple alignment replicates for uncertainty estimation?
muscle,muscle_04,muscle_04_03,student,I need to generate multiple alignment replicates for uncertainty estimation
muscle,muscle_04,muscle_04_04,polite,Please generate multiple alignment replicates for uncertainty estimation
muscle,muscle_04,muscle_04_05,sysadmin,Use muscle to generate multiple alignment replicates for uncertainty estimation
muscle,muscle_04,muscle_04_06,goal_oriented,I want to generate multiple alignment replicates for uncertainty estimation
muscle,muscle_04,muscle_04_07,expert,generate multiple alignment replicates uncertainty estimation
muscle,muscle_04,muscle_04_08,detailed,I have data that I need to process: generate multiple alignment replicates for uncertainty estimation
muscle,muscle_04,muscle_04_09,informal,"Hey, can you help me generate multiple alignment replicates for uncertainty estimation?"
muscle,muscle_04,muscle_04_10,alternative,Perform: generate multiple alignment replicates for uncertainty estimation
muscle,muscle_05,muscle_05_01,original,align multiple protein sequences with MUSCLE v5 with default parameters
muscle,muscle_05,muscle_05_02,beginner,How do I align multiple protein sequences with MUSCLE v5 with default parameters?
muscle,muscle_05,muscle_05_03,student,I need to align multiple protein sequences with MUSCLE v5 with default parameters
muscle,muscle_05,muscle_05_04,polite,Please align multiple protein sequences with MUSCLE v5 with default parameters
muscle,muscle_05,muscle_05_05,sysadmin,Use muscle to align multiple protein sequences with MUSCLE v5 with default parameters
muscle,muscle_05,muscle_05_06,goal_oriented,I want to align multiple protein sequences with MUSCLE v5 with default parameters
muscle,muscle_05,muscle_05_07,expert,align multiple protein sequences MUSCLE v5 default parameters
muscle,muscle_05,muscle_05_08,detailed,I have data that I need to process: align multiple protein sequences with MUSCLE v5 with default parameters
muscle,muscle_05,muscle_05_09,informal,"Hey, can you help me align multiple protein sequences with MUSCLE v5 with default parameters?"
muscle,muscle_05,muscle_05_10,alternative,"With MUSCLE v5 with default parameters, align multiple protein sequences"
muscle,muscle_06,muscle_06_01,original,align a large dataset with MUSCLE v5 super5 mode with verbose output
muscle,muscle_06,muscle_06_02,beginner,How do I align a large dataset with MUSCLE v5 super5 mode with verbose output?
muscle,muscle_06,muscle_06_03,student,I need to align a large dataset with MUSCLE v5 super5 mode with verbose output
muscle,muscle_06,muscle_06_04,polite,Please align a large dataset with MUSCLE v5 super5 mode with verbose output
muscle,muscle_06,muscle_06_05,sysadmin,Use muscle to align a large dataset with MUSCLE v5 super5 mode with verbose output
muscle,muscle_06,muscle_06_06,goal_oriented,I want to align a large dataset with MUSCLE v5 super5 mode with verbose output
muscle,muscle_06,muscle_06_07,expert,align large dataset MUSCLE v5 super5 mode verbose output
muscle,muscle_06,muscle_06_08,detailed,I have data that I need to process: align a large dataset with MUSCLE v5 super5 mode with verbose output
muscle,muscle_06,muscle_06_09,informal,"Hey, can you help me align a large dataset with MUSCLE v5 super5 mode with verbose output?"
muscle,muscle_06,muscle_06_10,alternative,"With MUSCLE v5 super5 mode with verbose output, align a large dataset"
muscle,muscle_07,muscle_07_01,original,align sequences with MUSCLE v3 syntax (legacy) using multiple threads
muscle,muscle_07,muscle_07_02,beginner,How do I align sequences with MUSCLE v3 syntax (legacy) using multiple threads?
muscle,muscle_07,muscle_07_03,student,I need to align sequences with MUSCLE v3 syntax (legacy) using multiple threads
muscle,muscle_07,muscle_07_04,polite,Please align sequences with MUSCLE v3 syntax (legacy) using multiple threads
muscle,muscle_07,muscle_07_05,sysadmin,Use muscle to align sequences with MUSCLE v3 syntax (legacy) using multiple threads
muscle,muscle_07,muscle_07_06,goal_oriented,I want to align sequences with MUSCLE v3 syntax (legacy) using multiple threads
muscle,muscle_07,muscle_07_07,expert,align sequences MUSCLE v3 syntax (legacy) multiple threads
muscle,muscle_07,muscle_07_08,detailed,"I have data that I need to process: align sequences with MUSCLE v3 syntax (legacy) using multiple threads, utilizing multiple CPU threads for speed"
muscle,muscle_07,muscle_07_09,informal,"Hey, can you help me align sequences with MUSCLE v3 syntax (legacy) using multiple threads?"
muscle,muscle_07,muscle_07_10,alternative,"With MUSCLE v3 syntax (legacy) using multiple threads, align sequences"
muscle,muscle_08,muscle_08_01,original,generate multiple alignment replicates for uncertainty estimation and write output to a file
muscle,muscle_08,muscle_08_02,beginner,How do I generate multiple alignment replicates for uncertainty estimation and write output to a file?
muscle,muscle_08,muscle_08_03,student,I need to generate multiple alignment replicates for uncertainty estimation and write output to a file
muscle,muscle_08,muscle_08_04,polite,Please generate multiple alignment replicates for uncertainty estimation and write output to a file
muscle,muscle_08,muscle_08_05,sysadmin,Use muscle to generate multiple alignment replicates for uncertainty estimation and write output to a file
muscle,muscle_08,muscle_08_06,goal_oriented,I want to generate multiple alignment replicates for uncertainty estimation and write output to a file
muscle,muscle_08,muscle_08_07,expert,generate multiple alignment replicates uncertainty estimation write output file
muscle,muscle_08,muscle_08_08,detailed,"I have data that I need to process: generate multiple alignment replicates for uncertainty estimation and write output to a file, saving the result to a specified output file"
muscle,muscle_08,muscle_08_09,informal,"Hey, can you help me generate multiple alignment replicates for uncertainty estimation and write output to a file?"
muscle,muscle_08,muscle_08_10,alternative,Write output to a file after generate multiple alignment replicates for uncertainty estimation
muscle,muscle_09,muscle_09_01,original,align multiple protein sequences with MUSCLE v5 in quiet mode
muscle,muscle_09,muscle_09_02,beginner,How do I align multiple protein sequences with MUSCLE v5 in quiet mode?
muscle,muscle_09,muscle_09_03,student,I need to align multiple protein sequences with MUSCLE v5 in quiet mode
muscle,muscle_09,muscle_09_04,polite,Please align multiple protein sequences with MUSCLE v5 in quiet mode
muscle,muscle_09,muscle_09_05,sysadmin,Use muscle to align multiple protein sequences with MUSCLE v5 in quiet mode
muscle,muscle_09,muscle_09_06,goal_oriented,I want to align multiple protein sequences with MUSCLE v5 in quiet mode
muscle,muscle_09,muscle_09_07,expert,align multiple protein sequences MUSCLE v5 quiet mode
muscle,muscle_09,muscle_09_08,detailed,I have data that I need to process: align multiple protein sequences with MUSCLE v5 in quiet mode
muscle,muscle_09,muscle_09_09,informal,"Hey, can you help me align multiple protein sequences with MUSCLE v5 in quiet mode?"
muscle,muscle_09,muscle_09_10,alternative,"With MUSCLE v5 in quiet mode, align multiple protein sequences"
muscle,muscle_10,muscle_10_01,original,align a large dataset with MUSCLE v5 super5 mode with default parameters
muscle,muscle_10,muscle_10_02,beginner,How do I align a large dataset with MUSCLE v5 super5 mode with default parameters?
muscle,muscle_10,muscle_10_03,student,I need to align a large dataset with MUSCLE v5 super5 mode with default parameters
muscle,muscle_10,muscle_10_04,polite,Please align a large dataset with MUSCLE v5 super5 mode with default parameters
muscle,muscle_10,muscle_10_05,sysadmin,Use muscle to align a large dataset with MUSCLE v5 super5 mode with default parameters
muscle,muscle_10,muscle_10_06,goal_oriented,I want to align a large dataset with MUSCLE v5 super5 mode with default parameters
muscle,muscle_10,muscle_10_07,expert,align large dataset MUSCLE v5 super5 mode default parameters
muscle,muscle_10,muscle_10_08,detailed,I have data that I need to process: align a large dataset with MUSCLE v5 super5 mode with default parameters
muscle,muscle_10,muscle_10_09,informal,"Hey, can you help me align a large dataset with MUSCLE v5 super5 mode with default parameters?"
muscle,muscle_10,muscle_10_10,alternative,"With MUSCLE v5 super5 mode with default parameters, align a large dataset"
nextflow,nextflow_01,nextflow_01_01,original,run an nf-core pipeline with Singularity on a Slurm cluster
nextflow,nextflow_01,nextflow_01_02,beginner,How do I run an nf-core pipeline with Singularity on a Slurm cluster?
nextflow,nextflow_01,nextflow_01_03,student,I need to run an nf-core pipeline with Singularity on a Slurm cluster
nextflow,nextflow_01,nextflow_01_04,polite,Please run an nf-core pipeline with Singularity on a Slurm cluster
nextflow,nextflow_01,nextflow_01_05,sysadmin,Use nextflow to run an nf-core pipeline with Singularity on a Slurm cluster
nextflow,nextflow_01,nextflow_01_06,goal_oriented,I want to run an nf-core pipeline with Singularity on a Slurm cluster
nextflow,nextflow_01,nextflow_01_07,expert,run nf-core pipeline Singularity on Slurm cluster
nextflow,nextflow_01,nextflow_01_08,detailed,I have data that I need to process: run an nf-core pipeline with Singularity on a Slurm cluster
nextflow,nextflow_01,nextflow_01_09,informal,"Hey, can you help me run an nf-core pipeline with Singularity on a Slurm cluster?"
nextflow,nextflow_01,nextflow_01_10,alternative,"With Singularity on a Slurm cluster, run an nf-core pipeline"
nextflow,nextflow_02,nextflow_02_01,original,run a pipeline with a custom work directory
nextflow,nextflow_02,nextflow_02_02,beginner,How do I run a pipeline with a custom work directory?
nextflow,nextflow_02,nextflow_02_03,student,I need to run a pipeline with a custom work directory
nextflow,nextflow_02,nextflow_02_04,polite,Please run a pipeline with a custom work directory
nextflow,nextflow_02,nextflow_02_05,sysadmin,Use nextflow to run a pipeline with a custom work directory
nextflow,nextflow_02,nextflow_02_06,goal_oriented,I want to run a pipeline with a custom work directory
nextflow,nextflow_02,nextflow_02_07,expert,run pipeline custom work directory
nextflow,nextflow_02,nextflow_02_08,detailed,I have data that I need to process: run a pipeline with a custom work directory
nextflow,nextflow_02,nextflow_02_09,informal,"Hey, can you help me run a pipeline with a custom work directory?"
nextflow,nextflow_02,nextflow_02_10,alternative,"With a custom work directory, run a pipeline"
nextflow,nextflow_03,nextflow_03_01,original,pull a specific pipeline version from nf-core
nextflow,nextflow_03,nextflow_03_02,beginner,How do I pull a specific pipeline version from nf-core?
nextflow,nextflow_03,nextflow_03_03,student,I need to pull a specific pipeline version from nf-core
nextflow,nextflow_03,nextflow_03_04,polite,Please pull a specific pipeline version from nf-core
nextflow,nextflow_03,nextflow_03_05,sysadmin,Use nextflow to pull a specific pipeline version from nf-core
nextflow,nextflow_03,nextflow_03_06,goal_oriented,I want to pull a specific pipeline version from nf-core
nextflow,nextflow_03,nextflow_03_07,expert,pull specific pipeline version nf-core
nextflow,nextflow_03,nextflow_03_08,detailed,I have data that I need to process: pull a specific pipeline version from nf-core
nextflow,nextflow_03,nextflow_03_09,informal,"Hey, can you help me pull a specific pipeline version from nf-core?"
nextflow,nextflow_03,nextflow_03_10,alternative,Perform: pull a specific pipeline version from nf-core
nextflow,nextflow_04,nextflow_04_01,original,resume a failed pipeline run
nextflow,nextflow_04,nextflow_04_02,beginner,How do I resume a failed pipeline run?
nextflow,nextflow_04,nextflow_04_03,student,I need to resume a failed pipeline run
nextflow,nextflow_04,nextflow_04_04,polite,Please resume a failed pipeline run
nextflow,nextflow_04,nextflow_04_05,sysadmin,Use nextflow to resume a failed pipeline run
nextflow,nextflow_04,nextflow_04_06,goal_oriented,I want to resume a failed pipeline run
nextflow,nextflow_04,nextflow_04_07,expert,resume failed pipeline run
nextflow,nextflow_04,nextflow_04_08,detailed,I have data that I need to process: resume a failed pipeline run
nextflow,nextflow_04,nextflow_04_09,informal,"Hey, can you help me resume a failed pipeline run?"
nextflow,nextflow_04,nextflow_04_10,alternative,Perform: resume a failed pipeline run
nextflow,nextflow_05,nextflow_05_01,original,run pipeline with a custom config file
nextflow,nextflow_05,nextflow_05_02,beginner,How do I run pipeline with a custom config file?
nextflow,nextflow_05,nextflow_05_03,student,I need to run pipeline with a custom config file
nextflow,nextflow_05,nextflow_05_04,polite,Please run pipeline with a custom config file
nextflow,nextflow_05,nextflow_05_05,sysadmin,Use nextflow to run pipeline with a custom config file
nextflow,nextflow_05,nextflow_05_06,goal_oriented,I want to run pipeline with a custom config file
nextflow,nextflow_05,nextflow_05_07,expert,run pipeline custom config file
nextflow,nextflow_05,nextflow_05_08,detailed,I have data that I need to process: run pipeline with a custom config file
nextflow,nextflow_05,nextflow_05_09,informal,"Hey, can you help me run pipeline with a custom config file?"
nextflow,nextflow_05,nextflow_05_10,alternative,"With a custom config file, run pipeline"
nextflow,nextflow_06,nextflow_06_01,original,show the list of cached pipeline assets
nextflow,nextflow_06,nextflow_06_02,beginner,How do I show the list of cached pipeline assets?
nextflow,nextflow_06,nextflow_06_03,student,I need to show the list of cached pipeline assets
nextflow,nextflow_06,nextflow_06_04,polite,Please show the list of cached pipeline assets
nextflow,nextflow_06,nextflow_06_05,sysadmin,Use nextflow to show the list of cached pipeline assets
nextflow,nextflow_06,nextflow_06_06,goal_oriented,I want to show the list of cached pipeline assets
nextflow,nextflow_06,nextflow_06_07,expert,show list of cached pipeline assets
nextflow,nextflow_06,nextflow_06_08,detailed,I have data that I need to process: show the list of cached pipeline assets
nextflow,nextflow_06,nextflow_06_09,informal,"Hey, can you help me show the list of cached pipeline assets?"
nextflow,nextflow_06,nextflow_06_10,alternative,Perform: show the list of cached pipeline assets
nextflow,nextflow_07,nextflow_07_01,original,clean up work directory keeping only the last run's intermediate files
nextflow,nextflow_07,nextflow_07_02,beginner,How do I clean up work directory keeping only the last run's intermediate files?
nextflow,nextflow_07,nextflow_07_03,student,I need to clean up work directory keeping only the last run's intermediate files
nextflow,nextflow_07,nextflow_07_04,polite,Please clean up work directory keeping only the last run's intermediate files
nextflow,nextflow_07,nextflow_07_05,sysadmin,Use nextflow to clean up work directory keeping only the last run's intermediate files
nextflow,nextflow_07,nextflow_07_06,goal_oriented,I want to clean up work directory keeping only the last run's intermediate files
nextflow,nextflow_07,nextflow_07_07,expert,clean up work directory keeping only last run's intermediate files
nextflow,nextflow_07,nextflow_07_08,detailed,I have data that I need to process: clean up work directory keeping only the last run's intermediate files
nextflow,nextflow_07,nextflow_07_09,informal,"Hey, can you help me clean up work directory keeping only the last run's intermediate files?"
nextflow,nextflow_07,nextflow_07_10,alternative,Perform: clean up work directory keeping only the last run's intermediate files
nextflow,nextflow_08,nextflow_08_01,original,run a pipeline with Singularity image cache set
nextflow,nextflow_08,nextflow_08_02,beginner,How do I run a pipeline with Singularity image cache set?
nextflow,nextflow_08,nextflow_08_03,student,I need to run a pipeline with Singularity image cache set
nextflow,nextflow_08,nextflow_08_04,polite,Please run a pipeline with Singularity image cache set
nextflow,nextflow_08,nextflow_08_05,sysadmin,Use nextflow to run a pipeline with Singularity image cache set
nextflow,nextflow_08,nextflow_08_06,goal_oriented,I want to run a pipeline with Singularity image cache set
nextflow,nextflow_08,nextflow_08_07,expert,run pipeline Singularity image cache set
nextflow,nextflow_08,nextflow_08_08,detailed,I have data that I need to process: run a pipeline with Singularity image cache set
nextflow,nextflow_08,nextflow_08_09,informal,"Hey, can you help me run a pipeline with Singularity image cache set?"
nextflow,nextflow_08,nextflow_08_10,alternative,"With Singularity image cache set, run a pipeline"
nextflow,nextflow_09,nextflow_09_01,original,check Nextflow version and environment
nextflow,nextflow_09,nextflow_09_02,beginner,How do I check Nextflow version and environment?
nextflow,nextflow_09,nextflow_09_03,student,I need to check Nextflow version and environment
nextflow,nextflow_09,nextflow_09_04,polite,Please check Nextflow version and environment
nextflow,nextflow_09,nextflow_09_05,sysadmin,Use nextflow to check Nextflow version and environment
nextflow,nextflow_09,nextflow_09_06,goal_oriented,I want to check Nextflow version and environment
nextflow,nextflow_09,nextflow_09_07,expert,check Nextflow version environment
nextflow,nextflow_09,nextflow_09_08,detailed,I have data that I need to process: check Nextflow version and environment
nextflow,nextflow_09,nextflow_09_09,informal,"Hey, can you help me check Nextflow version and environment?"
nextflow,nextflow_09,nextflow_09_10,alternative,Environment after check Nextflow version
nextflow,nextflow_10,nextflow_10_01,original,generate a run report and timeline
nextflow,nextflow_10,nextflow_10_02,beginner,How do I generate a run report and timeline?
nextflow,nextflow_10,nextflow_10_03,student,I need to generate a run report and timeline
nextflow,nextflow_10,nextflow_10_04,polite,Please generate a run report and timeline
nextflow,nextflow_10,nextflow_10_05,sysadmin,Use nextflow to generate a run report and timeline
nextflow,nextflow_10,nextflow_10_06,goal_oriented,I want to generate a run report and timeline
nextflow,nextflow_10,nextflow_10_07,expert,generate run report timeline
nextflow,nextflow_10,nextflow_10_08,detailed,I have data that I need to process: generate a run report and timeline
nextflow,nextflow_10,nextflow_10_09,informal,"Hey, can you help me generate a run report and timeline?"
nextflow,nextflow_10,nextflow_10_10,alternative,Timeline after generate a run report
orthofinder,orthofinder_01,orthofinder_01_01,original,run OrthoFinder on a directory of species proteomes
orthofinder,orthofinder_01,orthofinder_01_02,beginner,How do I run OrthoFinder on a directory of species proteomes?
orthofinder,orthofinder_01,orthofinder_01_03,student,I need to run OrthoFinder on a directory of species proteomes
orthofinder,orthofinder_01,orthofinder_01_04,polite,Please run OrthoFinder on a directory of species proteomes
orthofinder,orthofinder_01,orthofinder_01_05,sysadmin,Use orthofinder to run OrthoFinder on a directory of species proteomes
orthofinder,orthofinder_01,orthofinder_01_06,goal_oriented,I want to run OrthoFinder on a directory of species proteomes
orthofinder,orthofinder_01,orthofinder_01_07,expert,run OrthoFinder on directory of species proteomes
orthofinder,orthofinder_01,orthofinder_01_08,detailed,"I have data that I need to process: run OrthoFinder on a directory of species proteomes, utilizing multiple CPU threads for speed"
orthofinder,orthofinder_01,orthofinder_01_09,informal,"Hey, can you help me run OrthoFinder on a directory of species proteomes?"
orthofinder,orthofinder_01,orthofinder_01_10,alternative,Perform: run OrthoFinder on a directory of species proteomes
orthofinder,orthofinder_02,orthofinder_02_01,original,run OrthoFinder with MSA-based gene trees using MAFFT and IQ-TREE
orthofinder,orthofinder_02,orthofinder_02_02,beginner,How do I run OrthoFinder with MSA-based gene trees using MAFFT and IQ-TREE?
orthofinder,orthofinder_02,orthofinder_02_03,student,I need to run OrthoFinder with MSA-based gene trees using MAFFT and IQ-TREE
orthofinder,orthofinder_02,orthofinder_02_04,polite,Please run OrthoFinder with MSA-based gene trees using MAFFT and IQ-TREE
orthofinder,orthofinder_02,orthofinder_02_05,sysadmin,Use orthofinder to run OrthoFinder with MSA-based gene trees using MAFFT and IQ-TREE
orthofinder,orthofinder_02,orthofinder_02_06,goal_oriented,I want to run OrthoFinder with MSA-based gene trees using MAFFT and IQ-TREE
orthofinder,orthofinder_02,orthofinder_02_07,expert,run OrthoFinder MSA-based gene trees MAFFT IQ-TREE
orthofinder,orthofinder_02,orthofinder_02_08,detailed,"I have data that I need to process: run OrthoFinder with MSA-based gene trees using MAFFT and IQ-TREE, utilizing multiple CPU threads for speed"
orthofinder,orthofinder_02,orthofinder_02_09,informal,"Hey, can you help me run OrthoFinder with MSA-based gene trees using MAFFT and IQ-TREE?"
orthofinder,orthofinder_02,orthofinder_02_10,alternative,IQ-TREE after run OrthoFinder with MSA-based gene trees using MAFFT
orthofinder,orthofinder_03,orthofinder_03_01,original,infer orthogroups only without gene trees for fast proteome comparison
orthofinder,orthofinder_03,orthofinder_03_02,beginner,How do I infer orthogroups only without gene trees for fast proteome comparison?
orthofinder,orthofinder_03,orthofinder_03_03,student,I need to infer orthogroups only without gene trees for fast proteome comparison
orthofinder,orthofinder_03,orthofinder_03_04,polite,Please infer orthogroups only without gene trees for fast proteome comparison
orthofinder,orthofinder_03,orthofinder_03_05,sysadmin,Use orthofinder to infer orthogroups only without gene trees for fast proteome comparison
orthofinder,orthofinder_03,orthofinder_03_06,goal_oriented,I want to infer orthogroups only without gene trees for fast proteome comparison
orthofinder,orthofinder_03,orthofinder_03_07,expert,infer orthogroups only without gene trees fast proteome comparison
orthofinder,orthofinder_03,orthofinder_03_08,detailed,"I have data that I need to process: infer orthogroups only without gene trees for fast proteome comparison, utilizing multiple CPU threads for speed"
orthofinder,orthofinder_03,orthofinder_03_09,informal,"Hey, can you help me infer orthogroups only without gene trees for fast proteome comparison?"
orthofinder,orthofinder_03,orthofinder_03_10,alternative,Perform: infer orthogroups only without gene trees for fast proteome comparison
orthofinder,orthofinder_04,orthofinder_04_01,original,restart OrthoFinder from existing DIAMOND results (add a new species)
orthofinder,orthofinder_04,orthofinder_04_02,beginner,How do I restart OrthoFinder from existing DIAMOND results (add a new species)?
orthofinder,orthofinder_04,orthofinder_04_03,student,I need to restart OrthoFinder from existing DIAMOND results (add a new species)
orthofinder,orthofinder_04,orthofinder_04_04,polite,Please restart OrthoFinder from existing DIAMOND results (add a new species)
orthofinder,orthofinder_04,orthofinder_04_05,sysadmin,Use orthofinder to restart OrthoFinder from existing DIAMOND results (add a new species)
orthofinder,orthofinder_04,orthofinder_04_06,goal_oriented,I want to restart OrthoFinder from existing DIAMOND results (add a new species)
orthofinder,orthofinder_04,orthofinder_04_07,expert,restart OrthoFinder existing DIAMOND results (add new species)
orthofinder,orthofinder_04,orthofinder_04_08,detailed,"I have data that I need to process: restart OrthoFinder from existing DIAMOND results (add a new species), utilizing multiple CPU threads for speed"
orthofinder,orthofinder_04,orthofinder_04_09,informal,"Hey, can you help me restart OrthoFinder from existing DIAMOND results (add a new species)?"
orthofinder,orthofinder_04,orthofinder_04_10,alternative,Perform: restart OrthoFinder from existing DIAMOND results (add a new species)
orthofinder,orthofinder_05,orthofinder_05_01,original,use MMseqs2 instead of DIAMOND for faster all-vs-all search
orthofinder,orthofinder_05,orthofinder_05_02,beginner,How do I use MMseqs2 instead of DIAMOND for faster all-vs-all search?
orthofinder,orthofinder_05,orthofinder_05_03,student,I need to use MMseqs2 instead of DIAMOND for faster all-vs-all search
orthofinder,orthofinder_05,orthofinder_05_04,polite,Please use MMseqs2 instead of DIAMOND for faster all-vs-all search
orthofinder,orthofinder_05,orthofinder_05_05,sysadmin,Use orthofinder to use MMseqs2 instead of DIAMOND for faster all-vs-all search
orthofinder,orthofinder_05,orthofinder_05_06,goal_oriented,I want to use MMseqs2 instead of DIAMOND for faster all-vs-all search
orthofinder,orthofinder_05,orthofinder_05_07,expert,use MMseqs2 instead of DIAMOND faster all-vs-all search
orthofinder,orthofinder_05,orthofinder_05_08,detailed,"I have data that I need to process: use MMseqs2 instead of DIAMOND for faster all-vs-all search, utilizing multiple CPU threads for speed"
orthofinder,orthofinder_05,orthofinder_05_09,informal,"Hey, can you help me use MMseqs2 instead of DIAMOND for faster all-vs-all search?"
orthofinder,orthofinder_05,orthofinder_05_10,alternative,Perform: use MMseqs2 instead of DIAMOND for faster all-vs-all search
orthofinder,orthofinder_06,orthofinder_06_01,original,run OrthoFinder with a fixed output directory name
orthofinder,orthofinder_06,orthofinder_06_02,beginner,How do I run OrthoFinder with a fixed output directory name?
orthofinder,orthofinder_06,orthofinder_06_03,student,I need to run OrthoFinder with a fixed output directory name
orthofinder,orthofinder_06,orthofinder_06_04,polite,Please run OrthoFinder with a fixed output directory name
orthofinder,orthofinder_06,orthofinder_06_05,sysadmin,Use orthofinder to run OrthoFinder with a fixed output directory name
orthofinder,orthofinder_06,orthofinder_06_06,goal_oriented,I want to run OrthoFinder with a fixed output directory name
orthofinder,orthofinder_06,orthofinder_06_07,expert,run OrthoFinder fixed output directory name
orthofinder,orthofinder_06,orthofinder_06_08,detailed,"I have data that I need to process: run OrthoFinder with a fixed output directory name, utilizing multiple CPU threads for speed, saving the result to a specified output file"
orthofinder,orthofinder_06,orthofinder_06_09,informal,"Hey, can you help me run OrthoFinder with a fixed output directory name?"
orthofinder,orthofinder_06,orthofinder_06_10,alternative,"With a fixed output directory name, run OrthoFinder"
orthofinder,orthofinder_07,orthofinder_07_01,original,run OrthoFinder on a directory of species proteomes using multiple threads
orthofinder,orthofinder_07,orthofinder_07_02,beginner,How do I run OrthoFinder on a directory of species proteomes using multiple threads?
orthofinder,orthofinder_07,orthofinder_07_03,student,I need to run OrthoFinder on a directory of species proteomes using multiple threads
orthofinder,orthofinder_07,orthofinder_07_04,polite,Please run OrthoFinder on a directory of species proteomes using multiple threads
orthofinder,orthofinder_07,orthofinder_07_05,sysadmin,Use orthofinder to run OrthoFinder on a directory of species proteomes using multiple threads
orthofinder,orthofinder_07,orthofinder_07_06,goal_oriented,I want to run OrthoFinder on a directory of species proteomes using multiple threads
orthofinder,orthofinder_07,orthofinder_07_07,expert,run OrthoFinder on directory of species proteomes multiple threads
orthofinder,orthofinder_07,orthofinder_07_08,detailed,"I have data that I need to process: run OrthoFinder on a directory of species proteomes using multiple threads, utilizing multiple CPU threads for speed"
orthofinder,orthofinder_07,orthofinder_07_09,informal,"Hey, can you help me run OrthoFinder on a directory of species proteomes using multiple threads?"
orthofinder,orthofinder_07,orthofinder_07_10,alternative,Perform: run OrthoFinder on a directory of species proteomes using multiple threads
orthofinder,orthofinder_08,orthofinder_08_01,original,run OrthoFinder with MSA-based gene trees using MAFFT and IQ-TREE and write output to a file
orthofinder,orthofinder_08,orthofinder_08_02,beginner,How do I run OrthoFinder with MSA-based gene trees using MAFFT and IQ-TREE and write output to a file?
orthofinder,orthofinder_08,orthofinder_08_03,student,I need to run OrthoFinder with MSA-based gene trees using MAFFT and IQ-TREE and write output to a file
orthofinder,orthofinder_08,orthofinder_08_04,polite,Please run OrthoFinder with MSA-based gene trees using MAFFT and IQ-TREE and write output to a file
orthofinder,orthofinder_08,orthofinder_08_05,sysadmin,Use orthofinder to run OrthoFinder with MSA-based gene trees using MAFFT and IQ-TREE and write output to a file
orthofinder,orthofinder_08,orthofinder_08_06,goal_oriented,I want to run OrthoFinder with MSA-based gene trees using MAFFT and IQ-TREE and write output to a file
orthofinder,orthofinder_08,orthofinder_08_07,expert,run OrthoFinder MSA-based gene trees MAFFT IQ-TREE write output file
orthofinder,orthofinder_08,orthofinder_08_08,detailed,"I have data that I need to process: run OrthoFinder with MSA-based gene trees using MAFFT and IQ-TREE and write output to a file, utilizing multiple CPU threads for speed, saving the result to a specified output file"
orthofinder,orthofinder_08,orthofinder_08_09,informal,"Hey, can you help me run OrthoFinder with MSA-based gene trees using MAFFT and IQ-TREE and write output to a file?"
orthofinder,orthofinder_08,orthofinder_08_10,alternative,IQ-TREE and write output to a file after run OrthoFinder with MSA-based gene trees using MAFFT
orthofinder,orthofinder_09,orthofinder_09_01,original,infer orthogroups only without gene trees for fast proteome comparison in quiet mode
orthofinder,orthofinder_09,orthofinder_09_02,beginner,How do I infer orthogroups only without gene trees for fast proteome comparison in quiet mode?
orthofinder,orthofinder_09,orthofinder_09_03,student,I need to infer orthogroups only without gene trees for fast proteome comparison in quiet mode
orthofinder,orthofinder_09,orthofinder_09_04,polite,Please infer orthogroups only without gene trees for fast proteome comparison in quiet mode
orthofinder,orthofinder_09,orthofinder_09_05,sysadmin,Use orthofinder to infer orthogroups only without gene trees for fast proteome comparison in quiet mode
orthofinder,orthofinder_09,orthofinder_09_06,goal_oriented,I want to infer orthogroups only without gene trees for fast proteome comparison in quiet mode
orthofinder,orthofinder_09,orthofinder_09_07,expert,infer orthogroups only without gene trees fast proteome comparison quiet mode
orthofinder,orthofinder_09,orthofinder_09_08,detailed,"I have data that I need to process: infer orthogroups only without gene trees for fast proteome comparison in quiet mode, utilizing multiple CPU threads for speed"
orthofinder,orthofinder_09,orthofinder_09_09,informal,"Hey, can you help me infer orthogroups only without gene trees for fast proteome comparison in quiet mode?"
orthofinder,orthofinder_09,orthofinder_09_10,alternative,Perform: infer orthogroups only without gene trees for fast proteome comparison in quiet mode
orthofinder,orthofinder_10,orthofinder_10_01,original,restart OrthoFinder from existing DIAMOND results (add a new species) with default parameters
orthofinder,orthofinder_10,orthofinder_10_02,beginner,How do I restart OrthoFinder from existing DIAMOND results (add a new species) with default parameters?
orthofinder,orthofinder_10,orthofinder_10_03,student,I need to restart OrthoFinder from existing DIAMOND results (add a new species) with default parameters
orthofinder,orthofinder_10,orthofinder_10_04,polite,Please restart OrthoFinder from existing DIAMOND results (add a new species) with default parameters
orthofinder,orthofinder_10,orthofinder_10_05,sysadmin,Use orthofinder to restart OrthoFinder from existing DIAMOND results (add a new species) with default parameters
orthofinder,orthofinder_10,orthofinder_10_06,goal_oriented,I want to restart OrthoFinder from existing DIAMOND results (add a new species) with default parameters
orthofinder,orthofinder_10,orthofinder_10_07,expert,restart OrthoFinder existing DIAMOND results (add new species) default parameters
orthofinder,orthofinder_10,orthofinder_10_08,detailed,"I have data that I need to process: restart OrthoFinder from existing DIAMOND results (add a new species) with default parameters, utilizing multiple CPU threads for speed"
orthofinder,orthofinder_10,orthofinder_10_09,informal,"Hey, can you help me restart OrthoFinder from existing DIAMOND results (add a new species) with default parameters?"
orthofinder,orthofinder_10,orthofinder_10_10,alternative,"With default parameters, restart OrthoFinder from existing DIAMOND results (add a new species)"
pairtools,pairtools_01,pairtools_01_01,original,parse Hi-C BWA alignments to pairs format
pairtools,pairtools_01,pairtools_01_02,beginner,How do I parse Hi-C BWA alignments to pairs format?
pairtools,pairtools_01,pairtools_01_03,student,I need to parse Hi-C BWA alignments to pairs format
pairtools,pairtools_01,pairtools_01_04,polite,Please parse Hi-C BWA alignments to pairs format
pairtools,pairtools_01,pairtools_01_05,sysadmin,Use pairtools to parse Hi-C BWA alignments to pairs format
pairtools,pairtools_01,pairtools_01_06,goal_oriented,I want to parse Hi-C BWA alignments to pairs format
pairtools,pairtools_01,pairtools_01_07,expert,parse Hi-C BWA alignments pairs format
pairtools,pairtools_01,pairtools_01_08,detailed,I have data that I need to process: parse Hi-C BWA alignments to pairs format
pairtools,pairtools_01,pairtools_01_09,informal,"Hey, can you help me parse Hi-C BWA alignments to pairs format?"
pairtools,pairtools_01,pairtools_01_10,alternative,Output pairs format by performing: parse Hi-C BWA alignments
pairtools,pairtools_02,pairtools_02_01,original,sort pairs file for deduplication
pairtools,pairtools_02,pairtools_02_02,beginner,How do I sort pairs file for deduplication?
pairtools,pairtools_02,pairtools_02_03,student,I need to sort pairs file for deduplication
pairtools,pairtools_02,pairtools_02_04,polite,Please sort pairs file for deduplication
pairtools,pairtools_02,pairtools_02_05,sysadmin,Use pairtools to sort pairs file for deduplication
pairtools,pairtools_02,pairtools_02_06,goal_oriented,I want to sort pairs file for deduplication
pairtools,pairtools_02,pairtools_02_07,expert,sort pairs file deduplication
pairtools,pairtools_02,pairtools_02_08,detailed,I have data that I need to process: sort pairs file for deduplication
pairtools,pairtools_02,pairtools_02_09,informal,"Hey, can you help me sort pairs file for deduplication?"
pairtools,pairtools_02,pairtools_02_10,alternative,Perform: sort pairs file for deduplication
pairtools,pairtools_03,pairtools_03_01,original,deduplicate sorted pairs file
pairtools,pairtools_03,pairtools_03_02,beginner,How do I deduplicate sorted pairs file?
pairtools,pairtools_03,pairtools_03_03,student,I need to deduplicate sorted pairs file
pairtools,pairtools_03,pairtools_03_04,polite,Please deduplicate sorted pairs file
pairtools,pairtools_03,pairtools_03_05,sysadmin,Use pairtools to deduplicate sorted pairs file
pairtools,pairtools_03,pairtools_03_06,goal_oriented,I want to deduplicate sorted pairs file
pairtools,pairtools_03,pairtools_03_07,expert,deduplicate sorted pairs file
pairtools,pairtools_03,pairtools_03_08,detailed,"I have data that I need to process: deduplicate sorted pairs file, saving the result to a specified output file"
pairtools,pairtools_03,pairtools_03_09,informal,"Hey, can you help me deduplicate sorted pairs file?"
pairtools,pairtools_03,pairtools_03_10,alternative,Perform: deduplicate sorted pairs file
pairtools,pairtools_04,pairtools_04_01,original,bin pairs into contact matrix using cooler
pairtools,pairtools_04,pairtools_04_02,beginner,How do I bin pairs into contact matrix using cooler?
pairtools,pairtools_04,pairtools_04_03,student,I need to bin pairs into contact matrix using cooler
pairtools,pairtools_04,pairtools_04_04,polite,Please bin pairs into contact matrix using cooler
pairtools,pairtools_04,pairtools_04_05,sysadmin,Use pairtools to bin pairs into contact matrix using cooler
pairtools,pairtools_04,pairtools_04_06,goal_oriented,I want to bin pairs into contact matrix using cooler
pairtools,pairtools_04,pairtools_04_07,expert,bin pairs contact matrix cooler
pairtools,pairtools_04,pairtools_04_08,detailed,I have data that I need to process: bin pairs into contact matrix using cooler
pairtools,pairtools_04,pairtools_04_09,informal,"Hey, can you help me bin pairs into contact matrix using cooler?"
pairtools,pairtools_04,pairtools_04_10,alternative,Perform: bin pairs into contact matrix using cooler
pairtools,pairtools_05,pairtools_05_01,original,parse Hi-C BWA alignments to pairs format with default parameters
pairtools,pairtools_05,pairtools_05_02,beginner,How do I parse Hi-C BWA alignments to pairs format with default parameters?
pairtools,pairtools_05,pairtools_05_03,student,I need to parse Hi-C BWA alignments to pairs format with default parameters
pairtools,pairtools_05,pairtools_05_04,polite,Please parse Hi-C BWA alignments to pairs format with default parameters
pairtools,pairtools_05,pairtools_05_05,sysadmin,Use pairtools to parse Hi-C BWA alignments to pairs format with default parameters
pairtools,pairtools_05,pairtools_05_06,goal_oriented,I want to parse Hi-C BWA alignments to pairs format with default parameters
pairtools,pairtools_05,pairtools_05_07,expert,parse Hi-C BWA alignments pairs format default parameters
pairtools,pairtools_05,pairtools_05_08,detailed,I have data that I need to process: parse Hi-C BWA alignments to pairs format with default parameters
pairtools,pairtools_05,pairtools_05_09,informal,"Hey, can you help me parse Hi-C BWA alignments to pairs format with default parameters?"
pairtools,pairtools_05,pairtools_05_10,alternative,"With default parameters, parse Hi-C BWA alignments to pairs format"
pairtools,pairtools_06,pairtools_06_01,original,sort pairs file for deduplication
pairtools,pairtools_06,pairtools_06_02,beginner,How do I sort pairs file for deduplication?
pairtools,pairtools_06,pairtools_06_03,student,I need to sort pairs file for deduplication
pairtools,pairtools_06,pairtools_06_04,polite,Please sort pairs file for deduplication
pairtools,pairtools_06,pairtools_06_05,sysadmin,Use pairtools to sort pairs file for deduplication
pairtools,pairtools_06,pairtools_06_06,goal_oriented,I want to sort pairs file for deduplication
pairtools,pairtools_06,pairtools_06_07,expert,sort pairs file deduplication
pairtools,pairtools_06,pairtools_06_08,detailed,I have data that I need to process: sort pairs file for deduplication
pairtools,pairtools_06,pairtools_06_09,informal,"Hey, can you help me sort pairs file for deduplication?"
pairtools,pairtools_06,pairtools_06_10,alternative,Perform: sort pairs file for deduplication
pairtools,pairtools_07,pairtools_07_01,original,deduplicate sorted pairs file
pairtools,pairtools_07,pairtools_07_02,beginner,How do I deduplicate sorted pairs file?
pairtools,pairtools_07,pairtools_07_03,student,I need to deduplicate sorted pairs file
pairtools,pairtools_07,pairtools_07_04,polite,Please deduplicate sorted pairs file
pairtools,pairtools_07,pairtools_07_05,sysadmin,Use pairtools to deduplicate sorted pairs file
pairtools,pairtools_07,pairtools_07_06,goal_oriented,I want to deduplicate sorted pairs file
pairtools,pairtools_07,pairtools_07_07,expert,deduplicate sorted pairs file
pairtools,pairtools_07,pairtools_07_08,detailed,"I have data that I need to process: deduplicate sorted pairs file, saving the result to a specified output file"
pairtools,pairtools_07,pairtools_07_09,informal,"Hey, can you help me deduplicate sorted pairs file?"
pairtools,pairtools_07,pairtools_07_10,alternative,Perform: deduplicate sorted pairs file
pairtools,pairtools_08,pairtools_08_01,original,bin pairs into contact matrix using cooler and write output to a file
pairtools,pairtools_08,pairtools_08_02,beginner,How do I bin pairs into contact matrix using cooler and write output to a file?
pairtools,pairtools_08,pairtools_08_03,student,I need to bin pairs into contact matrix using cooler and write output to a file
pairtools,pairtools_08,pairtools_08_04,polite,Please bin pairs into contact matrix using cooler and write output to a file
pairtools,pairtools_08,pairtools_08_05,sysadmin,Use pairtools to bin pairs into contact matrix using cooler and write output to a file
pairtools,pairtools_08,pairtools_08_06,goal_oriented,I want to bin pairs into contact matrix using cooler and write output to a file
pairtools,pairtools_08,pairtools_08_07,expert,bin pairs contact matrix cooler write output file
pairtools,pairtools_08,pairtools_08_08,detailed,"I have data that I need to process: bin pairs into contact matrix using cooler and write output to a file, saving the result to a specified output file"
pairtools,pairtools_08,pairtools_08_09,informal,"Hey, can you help me bin pairs into contact matrix using cooler and write output to a file?"
pairtools,pairtools_08,pairtools_08_10,alternative,Write output to a file after bin pairs into contact matrix using cooler
pairtools,pairtools_09,pairtools_09_01,original,parse Hi-C BWA alignments to pairs format
pairtools,pairtools_09,pairtools_09_02,beginner,How do I parse Hi-C BWA alignments to pairs format?
pairtools,pairtools_09,pairtools_09_03,student,I need to parse Hi-C BWA alignments to pairs format
pairtools,pairtools_09,pairtools_09_04,polite,Please parse Hi-C BWA alignments to pairs format
pairtools,pairtools_09,pairtools_09_05,sysadmin,Use pairtools to parse Hi-C BWA alignments to pairs format
pairtools,pairtools_09,pairtools_09_06,goal_oriented,I want to parse Hi-C BWA alignments to pairs format
pairtools,pairtools_09,pairtools_09_07,expert,parse Hi-C BWA alignments pairs format
pairtools,pairtools_09,pairtools_09_08,detailed,I have data that I need to process: parse Hi-C BWA alignments to pairs format
pairtools,pairtools_09,pairtools_09_09,informal,"Hey, can you help me parse Hi-C BWA alignments to pairs format?"
pairtools,pairtools_09,pairtools_09_10,alternative,Output pairs format by performing: parse Hi-C BWA alignments
pairtools,pairtools_10,pairtools_10_01,original,sort pairs file for deduplication with default parameters
pairtools,pairtools_10,pairtools_10_02,beginner,How do I sort pairs file for deduplication with default parameters?
pairtools,pairtools_10,pairtools_10_03,student,I need to sort pairs file for deduplication with default parameters
pairtools,pairtools_10,pairtools_10_04,polite,Please sort pairs file for deduplication with default parameters
pairtools,pairtools_10,pairtools_10_05,sysadmin,Use pairtools to sort pairs file for deduplication with default parameters
pairtools,pairtools_10,pairtools_10_06,goal_oriented,I want to sort pairs file for deduplication with default parameters
pairtools,pairtools_10,pairtools_10_07,expert,sort pairs file deduplication default parameters
pairtools,pairtools_10,pairtools_10_08,detailed,I have data that I need to process: sort pairs file for deduplication with default parameters
pairtools,pairtools_10,pairtools_10_09,informal,"Hey, can you help me sort pairs file for deduplication with default parameters?"
pairtools,pairtools_10,pairtools_10_10,alternative,"With default parameters, sort pairs file for deduplication"
pbfusion,pbfusion_01,pbfusion_01_01,original,detect gene fusions from PacBio IsoSeq aligned data
pbfusion,pbfusion_01,pbfusion_01_02,beginner,How do I detect gene fusions from PacBio IsoSeq aligned data?
pbfusion,pbfusion_01,pbfusion_01_03,student,I need to detect gene fusions from PacBio IsoSeq aligned data
pbfusion,pbfusion_01,pbfusion_01_04,polite,Please detect gene fusions from PacBio IsoSeq aligned data
pbfusion,pbfusion_01,pbfusion_01_05,sysadmin,Use pbfusion to detect gene fusions from PacBio IsoSeq aligned data
pbfusion,pbfusion_01,pbfusion_01_06,goal_oriented,I want to detect gene fusions from PacBio IsoSeq aligned data
pbfusion,pbfusion_01,pbfusion_01_07,expert,detect gene fusions PacBio IsoSeq aligned data
pbfusion,pbfusion_01,pbfusion_01_08,detailed,"I have data that I need to process: detect gene fusions from PacBio IsoSeq aligned data, utilizing multiple CPU threads for speed, saving the result to a specified output file"
pbfusion,pbfusion_01,pbfusion_01_09,informal,"Hey, can you help me detect gene fusions from PacBio IsoSeq aligned data?"
pbfusion,pbfusion_01,pbfusion_01_10,alternative,Perform: detect gene fusions from PacBio IsoSeq aligned data
pbfusion,pbfusion_02,pbfusion_02_01,original,detect fusions with minimum supporting reads
pbfusion,pbfusion_02,pbfusion_02_02,beginner,How do I detect fusions with minimum supporting reads?
pbfusion,pbfusion_02,pbfusion_02_03,student,I need to detect fusions with minimum supporting reads
pbfusion,pbfusion_02,pbfusion_02_04,polite,Please detect fusions with minimum supporting reads
pbfusion,pbfusion_02,pbfusion_02_05,sysadmin,Use pbfusion to detect fusions with minimum supporting reads
pbfusion,pbfusion_02,pbfusion_02_06,goal_oriented,I want to detect fusions with minimum supporting reads
pbfusion,pbfusion_02,pbfusion_02_07,expert,detect fusions minimum supporting reads
pbfusion,pbfusion_02,pbfusion_02_08,detailed,"I have data that I need to process: detect fusions with minimum supporting reads, utilizing multiple CPU threads for speed, saving the result to a specified output file"
pbfusion,pbfusion_02,pbfusion_02_09,informal,"Hey, can you help me detect fusions with minimum supporting reads?"
pbfusion,pbfusion_02,pbfusion_02_10,alternative,"With minimum supporting reads, detect fusions"
pbfusion,pbfusion_03,pbfusion_03_01,original,detect gene fusions from PacBio IsoSeq aligned data and write output to a file
pbfusion,pbfusion_03,pbfusion_03_02,beginner,How do I detect gene fusions from PacBio IsoSeq aligned data and write output to a file?
pbfusion,pbfusion_03,pbfusion_03_03,student,I need to detect gene fusions from PacBio IsoSeq aligned data and write output to a file
pbfusion,pbfusion_03,pbfusion_03_04,polite,Please detect gene fusions from PacBio IsoSeq aligned data and write output to a file
pbfusion,pbfusion_03,pbfusion_03_05,sysadmin,Use pbfusion to detect gene fusions from PacBio IsoSeq aligned data and write output to a file
pbfusion,pbfusion_03,pbfusion_03_06,goal_oriented,I want to detect gene fusions from PacBio IsoSeq aligned data and write output to a file
pbfusion,pbfusion_03,pbfusion_03_07,expert,detect gene fusions PacBio IsoSeq aligned data write output file
pbfusion,pbfusion_03,pbfusion_03_08,detailed,"I have data that I need to process: detect gene fusions from PacBio IsoSeq aligned data and write output to a file, utilizing multiple CPU threads for speed, saving the result to a specified output file"
pbfusion,pbfusion_03,pbfusion_03_09,informal,"Hey, can you help me detect gene fusions from PacBio IsoSeq aligned data and write output to a file?"
pbfusion,pbfusion_03,pbfusion_03_10,alternative,Write output to a file after detect gene fusions from PacBio IsoSeq aligned data
pbfusion,pbfusion_04,pbfusion_04_01,original,detect fusions with minimum supporting reads in quiet mode
pbfusion,pbfusion_04,pbfusion_04_02,beginner,How do I detect fusions with minimum supporting reads in quiet mode?
pbfusion,pbfusion_04,pbfusion_04_03,student,I need to detect fusions with minimum supporting reads in quiet mode
pbfusion,pbfusion_04,pbfusion_04_04,polite,Please detect fusions with minimum supporting reads in quiet mode
pbfusion,pbfusion_04,pbfusion_04_05,sysadmin,Use pbfusion to detect fusions with minimum supporting reads in quiet mode
pbfusion,pbfusion_04,pbfusion_04_06,goal_oriented,I want to detect fusions with minimum supporting reads in quiet mode
pbfusion,pbfusion_04,pbfusion_04_07,expert,detect fusions minimum supporting reads quiet mode
pbfusion,pbfusion_04,pbfusion_04_08,detailed,"I have data that I need to process: detect fusions with minimum supporting reads in quiet mode, utilizing multiple CPU threads for speed, saving the result to a specified output file"
pbfusion,pbfusion_04,pbfusion_04_09,informal,"Hey, can you help me detect fusions with minimum supporting reads in quiet mode?"
pbfusion,pbfusion_04,pbfusion_04_10,alternative,"With minimum supporting reads in quiet mode, detect fusions"
pbfusion,pbfusion_05,pbfusion_05_01,original,detect gene fusions from PacBio IsoSeq aligned data with default parameters
pbfusion,pbfusion_05,pbfusion_05_02,beginner,How do I detect gene fusions from PacBio IsoSeq aligned data with default parameters?
pbfusion,pbfusion_05,pbfusion_05_03,student,I need to detect gene fusions from PacBio IsoSeq aligned data with default parameters
pbfusion,pbfusion_05,pbfusion_05_04,polite,Please detect gene fusions from PacBio IsoSeq aligned data with default parameters
pbfusion,pbfusion_05,pbfusion_05_05,sysadmin,Use pbfusion to detect gene fusions from PacBio IsoSeq aligned data with default parameters
pbfusion,pbfusion_05,pbfusion_05_06,goal_oriented,I want to detect gene fusions from PacBio IsoSeq aligned data with default parameters
pbfusion,pbfusion_05,pbfusion_05_07,expert,detect gene fusions PacBio IsoSeq aligned data default parameters
pbfusion,pbfusion_05,pbfusion_05_08,detailed,"I have data that I need to process: detect gene fusions from PacBio IsoSeq aligned data with default parameters, utilizing multiple CPU threads for speed, saving the result to a specified output file"
pbfusion,pbfusion_05,pbfusion_05_09,informal,"Hey, can you help me detect gene fusions from PacBio IsoSeq aligned data with default parameters?"
pbfusion,pbfusion_05,pbfusion_05_10,alternative,"With default parameters, detect gene fusions from PacBio IsoSeq aligned data"
pbfusion,pbfusion_06,pbfusion_06_01,original,detect fusions with minimum supporting reads with verbose output
pbfusion,pbfusion_06,pbfusion_06_02,beginner,How do I detect fusions with minimum supporting reads with verbose output?
pbfusion,pbfusion_06,pbfusion_06_03,student,I need to detect fusions with minimum supporting reads with verbose output
pbfusion,pbfusion_06,pbfusion_06_04,polite,Please detect fusions with minimum supporting reads with verbose output
pbfusion,pbfusion_06,pbfusion_06_05,sysadmin,Use pbfusion to detect fusions with minimum supporting reads with verbose output
pbfusion,pbfusion_06,pbfusion_06_06,goal_oriented,I want to detect fusions with minimum supporting reads with verbose output
pbfusion,pbfusion_06,pbfusion_06_07,expert,detect fusions minimum supporting reads verbose output
pbfusion,pbfusion_06,pbfusion_06_08,detailed,"I have data that I need to process: detect fusions with minimum supporting reads with verbose output, utilizing multiple CPU threads for speed, saving the result to a specified output file"
pbfusion,pbfusion_06,pbfusion_06_09,informal,"Hey, can you help me detect fusions with minimum supporting reads with verbose output?"
pbfusion,pbfusion_06,pbfusion_06_10,alternative,"With minimum supporting reads with verbose output, detect fusions"
pbfusion,pbfusion_07,pbfusion_07_01,original,detect gene fusions from PacBio IsoSeq aligned data using multiple threads
pbfusion,pbfusion_07,pbfusion_07_02,beginner,How do I detect gene fusions from PacBio IsoSeq aligned data using multiple threads?
pbfusion,pbfusion_07,pbfusion_07_03,student,I need to detect gene fusions from PacBio IsoSeq aligned data using multiple threads
pbfusion,pbfusion_07,pbfusion_07_04,polite,Please detect gene fusions from PacBio IsoSeq aligned data using multiple threads
pbfusion,pbfusion_07,pbfusion_07_05,sysadmin,Use pbfusion to detect gene fusions from PacBio IsoSeq aligned data using multiple threads
pbfusion,pbfusion_07,pbfusion_07_06,goal_oriented,I want to detect gene fusions from PacBio IsoSeq aligned data using multiple threads
pbfusion,pbfusion_07,pbfusion_07_07,expert,detect gene fusions PacBio IsoSeq aligned data multiple threads
pbfusion,pbfusion_07,pbfusion_07_08,detailed,"I have data that I need to process: detect gene fusions from PacBio IsoSeq aligned data using multiple threads, utilizing multiple CPU threads for speed, saving the result to a specified output file"
pbfusion,pbfusion_07,pbfusion_07_09,informal,"Hey, can you help me detect gene fusions from PacBio IsoSeq aligned data using multiple threads?"
pbfusion,pbfusion_07,pbfusion_07_10,alternative,Perform: detect gene fusions from PacBio IsoSeq aligned data using multiple threads
pbfusion,pbfusion_08,pbfusion_08_01,original,detect fusions with minimum supporting reads and write output to a file
pbfusion,pbfusion_08,pbfusion_08_02,beginner,How do I detect fusions with minimum supporting reads and write output to a file?
pbfusion,pbfusion_08,pbfusion_08_03,student,I need to detect fusions with minimum supporting reads and write output to a file
pbfusion,pbfusion_08,pbfusion_08_04,polite,Please detect fusions with minimum supporting reads and write output to a file
pbfusion,pbfusion_08,pbfusion_08_05,sysadmin,Use pbfusion to detect fusions with minimum supporting reads and write output to a file
pbfusion,pbfusion_08,pbfusion_08_06,goal_oriented,I want to detect fusions with minimum supporting reads and write output to a file
pbfusion,pbfusion_08,pbfusion_08_07,expert,detect fusions minimum supporting reads write output file
pbfusion,pbfusion_08,pbfusion_08_08,detailed,"I have data that I need to process: detect fusions with minimum supporting reads and write output to a file, utilizing multiple CPU threads for speed, saving the result to a specified output file"
pbfusion,pbfusion_08,pbfusion_08_09,informal,"Hey, can you help me detect fusions with minimum supporting reads and write output to a file?"
pbfusion,pbfusion_08,pbfusion_08_10,alternative,Write output to a file after detect fusions with minimum supporting reads
pbfusion,pbfusion_09,pbfusion_09_01,original,detect gene fusions from PacBio IsoSeq aligned data in quiet mode
pbfusion,pbfusion_09,pbfusion_09_02,beginner,How do I detect gene fusions from PacBio IsoSeq aligned data in quiet mode?
pbfusion,pbfusion_09,pbfusion_09_03,student,I need to detect gene fusions from PacBio IsoSeq aligned data in quiet mode
pbfusion,pbfusion_09,pbfusion_09_04,polite,Please detect gene fusions from PacBio IsoSeq aligned data in quiet mode
pbfusion,pbfusion_09,pbfusion_09_05,sysadmin,Use pbfusion to detect gene fusions from PacBio IsoSeq aligned data in quiet mode
pbfusion,pbfusion_09,pbfusion_09_06,goal_oriented,I want to detect gene fusions from PacBio IsoSeq aligned data in quiet mode
pbfusion,pbfusion_09,pbfusion_09_07,expert,detect gene fusions PacBio IsoSeq aligned data quiet mode
pbfusion,pbfusion_09,pbfusion_09_08,detailed,"I have data that I need to process: detect gene fusions from PacBio IsoSeq aligned data in quiet mode, utilizing multiple CPU threads for speed, saving the result to a specified output file"
pbfusion,pbfusion_09,pbfusion_09_09,informal,"Hey, can you help me detect gene fusions from PacBio IsoSeq aligned data in quiet mode?"
pbfusion,pbfusion_09,pbfusion_09_10,alternative,Perform: detect gene fusions from PacBio IsoSeq aligned data in quiet mode
pbfusion,pbfusion_10,pbfusion_10_01,original,detect fusions with minimum supporting reads with default parameters
pbfusion,pbfusion_10,pbfusion_10_02,beginner,How do I detect fusions with minimum supporting reads with default parameters?
pbfusion,pbfusion_10,pbfusion_10_03,student,I need to detect fusions with minimum supporting reads with default parameters
pbfusion,pbfusion_10,pbfusion_10_04,polite,Please detect fusions with minimum supporting reads with default parameters
pbfusion,pbfusion_10,pbfusion_10_05,sysadmin,Use pbfusion to detect fusions with minimum supporting reads with default parameters
pbfusion,pbfusion_10,pbfusion_10_06,goal_oriented,I want to detect fusions with minimum supporting reads with default parameters
pbfusion,pbfusion_10,pbfusion_10_07,expert,detect fusions minimum supporting reads default parameters
pbfusion,pbfusion_10,pbfusion_10_08,detailed,"I have data that I need to process: detect fusions with minimum supporting reads with default parameters, utilizing multiple CPU threads for speed, saving the result to a specified output file"
pbfusion,pbfusion_10,pbfusion_10_09,informal,"Hey, can you help me detect fusions with minimum supporting reads with default parameters?"
pbfusion,pbfusion_10,pbfusion_10_10,alternative,"With minimum supporting reads with default parameters, detect fusions"
pbmm2,pbmm2_01,pbmm2_01_01,original,align PacBio HiFi reads to reference genome
pbmm2,pbmm2_01,pbmm2_01_02,beginner,How do I align PacBio HiFi reads to reference genome?
pbmm2,pbmm2_01,pbmm2_01_03,student,I need to align PacBio HiFi reads to reference genome
pbmm2,pbmm2_01,pbmm2_01_04,polite,Please align PacBio HiFi reads to reference genome
pbmm2,pbmm2_01,pbmm2_01_05,sysadmin,Use pbmm2 to align PacBio HiFi reads to reference genome
pbmm2,pbmm2_01,pbmm2_01_06,goal_oriented,I want to align PacBio HiFi reads to reference genome
pbmm2,pbmm2_01,pbmm2_01_07,expert,align PacBio HiFi reads reference genome
pbmm2,pbmm2_01,pbmm2_01_08,detailed,I have data that I need to process: align PacBio HiFi reads to reference genome
pbmm2,pbmm2_01,pbmm2_01_09,informal,"Hey, can you help me align PacBio HiFi reads to reference genome?"
pbmm2,pbmm2_01,pbmm2_01_10,alternative,Output reference genome by performing: align PacBio HiFi reads
pbmm2,pbmm2_02,pbmm2_02_01,original,align PacBio IsoSeq transcriptome reads
pbmm2,pbmm2_02,pbmm2_02_02,beginner,How do I align PacBio IsoSeq transcriptome reads?
pbmm2,pbmm2_02,pbmm2_02_03,student,I need to align PacBio IsoSeq transcriptome reads
pbmm2,pbmm2_02,pbmm2_02_04,polite,Please align PacBio IsoSeq transcriptome reads
pbmm2,pbmm2_02,pbmm2_02_05,sysadmin,Use pbmm2 to align PacBio IsoSeq transcriptome reads
pbmm2,pbmm2_02,pbmm2_02_06,goal_oriented,I want to align PacBio IsoSeq transcriptome reads
pbmm2,pbmm2_02,pbmm2_02_07,expert,align PacBio IsoSeq transcriptome reads
pbmm2,pbmm2_02,pbmm2_02_08,detailed,I have data that I need to process: align PacBio IsoSeq transcriptome reads
pbmm2,pbmm2_02,pbmm2_02_09,informal,"Hey, can you help me align PacBio IsoSeq transcriptome reads?"
pbmm2,pbmm2_02,pbmm2_02_10,alternative,Perform: align PacBio IsoSeq transcriptome reads
pbmm2,pbmm2_03,pbmm2_03_01,original,index reference genome for repeated pbmm2 use
pbmm2,pbmm2_03,pbmm2_03_02,beginner,How do I index reference genome for repeated pbmm2 use?
pbmm2,pbmm2_03,pbmm2_03_03,student,I need to index reference genome for repeated pbmm2 use
pbmm2,pbmm2_03,pbmm2_03_04,polite,Please index reference genome for repeated pbmm2 use
pbmm2,pbmm2_03,pbmm2_03_05,sysadmin,Use pbmm2 to index reference genome for repeated pbmm2 use
pbmm2,pbmm2_03,pbmm2_03_06,goal_oriented,I want to index reference genome for repeated pbmm2 use
pbmm2,pbmm2_03,pbmm2_03_07,expert,index reference genome repeated pbmm2 use
pbmm2,pbmm2_03,pbmm2_03_08,detailed,I have data that I need to process: index reference genome for repeated pbmm2 use
pbmm2,pbmm2_03,pbmm2_03_09,informal,"Hey, can you help me index reference genome for repeated pbmm2 use?"
pbmm2,pbmm2_03,pbmm2_03_10,alternative,Perform: index reference genome for repeated pbmm2 use
pbmm2,pbmm2_04,pbmm2_04_01,original,align CLR (subread) PacBio reads
pbmm2,pbmm2_04,pbmm2_04_02,beginner,How do I align CLR (subread) PacBio reads?
pbmm2,pbmm2_04,pbmm2_04_03,student,I need to align CLR (subread) PacBio reads
pbmm2,pbmm2_04,pbmm2_04_04,polite,Please align CLR (subread) PacBio reads
pbmm2,pbmm2_04,pbmm2_04_05,sysadmin,Use pbmm2 to align CLR (subread) PacBio reads
pbmm2,pbmm2_04,pbmm2_04_06,goal_oriented,I want to align CLR (subread) PacBio reads
pbmm2,pbmm2_04,pbmm2_04_07,expert,align CLR (subread) PacBio reads
pbmm2,pbmm2_04,pbmm2_04_08,detailed,I have data that I need to process: align CLR (subread) PacBio reads
pbmm2,pbmm2_04,pbmm2_04_09,informal,"Hey, can you help me align CLR (subread) PacBio reads?"
pbmm2,pbmm2_04,pbmm2_04_10,alternative,Perform: align CLR (subread) PacBio reads
pbmm2,pbmm2_05,pbmm2_05_01,original,align PacBio HiFi reads to reference genome with default parameters
pbmm2,pbmm2_05,pbmm2_05_02,beginner,How do I align PacBio HiFi reads to reference genome with default parameters?
pbmm2,pbmm2_05,pbmm2_05_03,student,I need to align PacBio HiFi reads to reference genome with default parameters
pbmm2,pbmm2_05,pbmm2_05_04,polite,Please align PacBio HiFi reads to reference genome with default parameters
pbmm2,pbmm2_05,pbmm2_05_05,sysadmin,Use pbmm2 to align PacBio HiFi reads to reference genome with default parameters
pbmm2,pbmm2_05,pbmm2_05_06,goal_oriented,I want to align PacBio HiFi reads to reference genome with default parameters
pbmm2,pbmm2_05,pbmm2_05_07,expert,align PacBio HiFi reads reference genome default parameters
pbmm2,pbmm2_05,pbmm2_05_08,detailed,I have data that I need to process: align PacBio HiFi reads to reference genome with default parameters
pbmm2,pbmm2_05,pbmm2_05_09,informal,"Hey, can you help me align PacBio HiFi reads to reference genome with default parameters?"
pbmm2,pbmm2_05,pbmm2_05_10,alternative,"With default parameters, align PacBio HiFi reads to reference genome"
pbmm2,pbmm2_06,pbmm2_06_01,original,align PacBio IsoSeq transcriptome reads with verbose output
pbmm2,pbmm2_06,pbmm2_06_02,beginner,How do I align PacBio IsoSeq transcriptome reads with verbose output?
pbmm2,pbmm2_06,pbmm2_06_03,student,I need to align PacBio IsoSeq transcriptome reads with verbose output
pbmm2,pbmm2_06,pbmm2_06_04,polite,Please align PacBio IsoSeq transcriptome reads with verbose output
pbmm2,pbmm2_06,pbmm2_06_05,sysadmin,Use pbmm2 to align PacBio IsoSeq transcriptome reads with verbose output
pbmm2,pbmm2_06,pbmm2_06_06,goal_oriented,I want to align PacBio IsoSeq transcriptome reads with verbose output
pbmm2,pbmm2_06,pbmm2_06_07,expert,align PacBio IsoSeq transcriptome reads verbose output
pbmm2,pbmm2_06,pbmm2_06_08,detailed,I have data that I need to process: align PacBio IsoSeq transcriptome reads with verbose output
pbmm2,pbmm2_06,pbmm2_06_09,informal,"Hey, can you help me align PacBio IsoSeq transcriptome reads with verbose output?"
pbmm2,pbmm2_06,pbmm2_06_10,alternative,"With verbose output, align PacBio IsoSeq transcriptome reads"
pbmm2,pbmm2_07,pbmm2_07_01,original,index reference genome for repeated pbmm2 use using multiple threads
pbmm2,pbmm2_07,pbmm2_07_02,beginner,How do I index reference genome for repeated pbmm2 use using multiple threads?
pbmm2,pbmm2_07,pbmm2_07_03,student,I need to index reference genome for repeated pbmm2 use using multiple threads
pbmm2,pbmm2_07,pbmm2_07_04,polite,Please index reference genome for repeated pbmm2 use using multiple threads
pbmm2,pbmm2_07,pbmm2_07_05,sysadmin,Use pbmm2 to index reference genome for repeated pbmm2 use using multiple threads
pbmm2,pbmm2_07,pbmm2_07_06,goal_oriented,I want to index reference genome for repeated pbmm2 use using multiple threads
pbmm2,pbmm2_07,pbmm2_07_07,expert,index reference genome repeated pbmm2 use multiple threads
pbmm2,pbmm2_07,pbmm2_07_08,detailed,"I have data that I need to process: index reference genome for repeated pbmm2 use using multiple threads, utilizing multiple CPU threads for speed"
pbmm2,pbmm2_07,pbmm2_07_09,informal,"Hey, can you help me index reference genome for repeated pbmm2 use using multiple threads?"
pbmm2,pbmm2_07,pbmm2_07_10,alternative,Perform: index reference genome for repeated pbmm2 use using multiple threads
pbmm2,pbmm2_08,pbmm2_08_01,original,align CLR (subread) PacBio reads and write output to a file
pbmm2,pbmm2_08,pbmm2_08_02,beginner,How do I align CLR (subread) PacBio reads and write output to a file?
pbmm2,pbmm2_08,pbmm2_08_03,student,I need to align CLR (subread) PacBio reads and write output to a file
pbmm2,pbmm2_08,pbmm2_08_04,polite,Please align CLR (subread) PacBio reads and write output to a file
pbmm2,pbmm2_08,pbmm2_08_05,sysadmin,Use pbmm2 to align CLR (subread) PacBio reads and write output to a file
pbmm2,pbmm2_08,pbmm2_08_06,goal_oriented,I want to align CLR (subread) PacBio reads and write output to a file
pbmm2,pbmm2_08,pbmm2_08_07,expert,align CLR (subread) PacBio reads write output file
pbmm2,pbmm2_08,pbmm2_08_08,detailed,"I have data that I need to process: align CLR (subread) PacBio reads and write output to a file, saving the result to a specified output file"
pbmm2,pbmm2_08,pbmm2_08_09,informal,"Hey, can you help me align CLR (subread) PacBio reads and write output to a file?"
pbmm2,pbmm2_08,pbmm2_08_10,alternative,Write output to a file after align CLR (subread) PacBio reads
pbmm2,pbmm2_09,pbmm2_09_01,original,align PacBio HiFi reads to reference genome in quiet mode
pbmm2,pbmm2_09,pbmm2_09_02,beginner,How do I align PacBio HiFi reads to reference genome in quiet mode?
pbmm2,pbmm2_09,pbmm2_09_03,student,I need to align PacBio HiFi reads to reference genome in quiet mode
pbmm2,pbmm2_09,pbmm2_09_04,polite,Please align PacBio HiFi reads to reference genome in quiet mode
pbmm2,pbmm2_09,pbmm2_09_05,sysadmin,Use pbmm2 to align PacBio HiFi reads to reference genome in quiet mode
pbmm2,pbmm2_09,pbmm2_09_06,goal_oriented,I want to align PacBio HiFi reads to reference genome in quiet mode
pbmm2,pbmm2_09,pbmm2_09_07,expert,align PacBio HiFi reads reference genome quiet mode
pbmm2,pbmm2_09,pbmm2_09_08,detailed,I have data that I need to process: align PacBio HiFi reads to reference genome in quiet mode
pbmm2,pbmm2_09,pbmm2_09_09,informal,"Hey, can you help me align PacBio HiFi reads to reference genome in quiet mode?"
pbmm2,pbmm2_09,pbmm2_09_10,alternative,Output reference genome in quiet mode by performing: align PacBio HiFi reads
pbmm2,pbmm2_10,pbmm2_10_01,original,align PacBio IsoSeq transcriptome reads with default parameters
pbmm2,pbmm2_10,pbmm2_10_02,beginner,How do I align PacBio IsoSeq transcriptome reads with default parameters?
pbmm2,pbmm2_10,pbmm2_10_03,student,I need to align PacBio IsoSeq transcriptome reads with default parameters
pbmm2,pbmm2_10,pbmm2_10_04,polite,Please align PacBio IsoSeq transcriptome reads with default parameters
pbmm2,pbmm2_10,pbmm2_10_05,sysadmin,Use pbmm2 to align PacBio IsoSeq transcriptome reads with default parameters
pbmm2,pbmm2_10,pbmm2_10_06,goal_oriented,I want to align PacBio IsoSeq transcriptome reads with default parameters
pbmm2,pbmm2_10,pbmm2_10_07,expert,align PacBio IsoSeq transcriptome reads default parameters
pbmm2,pbmm2_10,pbmm2_10_08,detailed,I have data that I need to process: align PacBio IsoSeq transcriptome reads with default parameters
pbmm2,pbmm2_10,pbmm2_10_09,informal,"Hey, can you help me align PacBio IsoSeq transcriptome reads with default parameters?"
pbmm2,pbmm2_10,pbmm2_10_10,alternative,"With default parameters, align PacBio IsoSeq transcriptome reads"
pbsv,pbsv_01,pbsv_01_01,original,discover SV signatures from PacBio HiFi aligned BAM
pbsv,pbsv_01,pbsv_01_02,beginner,How do I discover SV signatures from PacBio HiFi aligned BAM?
pbsv,pbsv_01,pbsv_01_03,student,I need to discover SV signatures from PacBio HiFi aligned BAM
pbsv,pbsv_01,pbsv_01_04,polite,Please discover SV signatures from PacBio HiFi aligned BAM
pbsv,pbsv_01,pbsv_01_05,sysadmin,Use pbsv to discover SV signatures from PacBio HiFi aligned BAM
pbsv,pbsv_01,pbsv_01_06,goal_oriented,I want to discover SV signatures from PacBio HiFi aligned BAM
pbsv,pbsv_01,pbsv_01_07,expert,discover SV signatures PacBio HiFi aligned BAM
pbsv,pbsv_01,pbsv_01_08,detailed,I have data that I need to process: discover SV signatures from PacBio HiFi aligned BAM
pbsv,pbsv_01,pbsv_01_09,informal,"Hey, can you help me discover SV signatures from PacBio HiFi aligned BAM?"
pbsv,pbsv_01,pbsv_01_10,alternative,Perform: discover SV signatures from PacBio HiFi aligned BAM
pbsv,pbsv_02,pbsv_02_01,original,call SVs from a single sample's signature file
pbsv,pbsv_02,pbsv_02_02,beginner,How do I call SVs from a single sample's signature file?
pbsv,pbsv_02,pbsv_02_03,student,I need to call SVs from a single sample's signature file
pbsv,pbsv_02,pbsv_02_04,polite,Please call SVs from a single sample's signature file
pbsv,pbsv_02,pbsv_02_05,sysadmin,Use pbsv to call SVs from a single sample's signature file
pbsv,pbsv_02,pbsv_02_06,goal_oriented,I want to call SVs from a single sample's signature file
pbsv,pbsv_02,pbsv_02_07,expert,call SVs single sample's signature file
pbsv,pbsv_02,pbsv_02_08,detailed,I have data that I need to process: call SVs from a single sample's signature file
pbsv,pbsv_02,pbsv_02_09,informal,"Hey, can you help me call SVs from a single sample's signature file?"
pbsv,pbsv_02,pbsv_02_10,alternative,Perform: call SVs from a single sample's signature file
pbsv,pbsv_03,pbsv_03_01,original,call SVs jointly from multiple samples
pbsv,pbsv_03,pbsv_03_02,beginner,How do I call SVs jointly from multiple samples?
pbsv,pbsv_03,pbsv_03_03,student,I need to call SVs jointly from multiple samples
pbsv,pbsv_03,pbsv_03_04,polite,Please call SVs jointly from multiple samples
pbsv,pbsv_03,pbsv_03_05,sysadmin,Use pbsv to call SVs jointly from multiple samples
pbsv,pbsv_03,pbsv_03_06,goal_oriented,I want to call SVs jointly from multiple samples
pbsv,pbsv_03,pbsv_03_07,expert,call SVs jointly multiple samples
pbsv,pbsv_03,pbsv_03_08,detailed,I have data that I need to process: call SVs jointly from multiple samples
pbsv,pbsv_03,pbsv_03_09,informal,"Hey, can you help me call SVs jointly from multiple samples?"
pbsv,pbsv_03,pbsv_03_10,alternative,Perform: call SVs jointly from multiple samples
pbsv,pbsv_04,pbsv_04_01,original,discover with tandem repeat annotation for better accuracy
pbsv,pbsv_04,pbsv_04_02,beginner,How do I discover with tandem repeat annotation for better accuracy?
pbsv,pbsv_04,pbsv_04_03,student,I need to discover with tandem repeat annotation for better accuracy
pbsv,pbsv_04,pbsv_04_04,polite,Please discover with tandem repeat annotation for better accuracy
pbsv,pbsv_04,pbsv_04_05,sysadmin,Use pbsv to discover with tandem repeat annotation for better accuracy
pbsv,pbsv_04,pbsv_04_06,goal_oriented,I want to discover with tandem repeat annotation for better accuracy
pbsv,pbsv_04,pbsv_04_07,expert,discover tandem repeat annotation better accuracy
pbsv,pbsv_04,pbsv_04_08,detailed,I have data that I need to process: discover with tandem repeat annotation for better accuracy
pbsv,pbsv_04,pbsv_04_09,informal,"Hey, can you help me discover with tandem repeat annotation for better accuracy?"
pbsv,pbsv_04,pbsv_04_10,alternative,"With tandem repeat annotation for better accuracy, discover"
pbsv,pbsv_05,pbsv_05_01,original,discover SV signatures from PacBio HiFi aligned BAM with default parameters
pbsv,pbsv_05,pbsv_05_02,beginner,How do I discover SV signatures from PacBio HiFi aligned BAM with default parameters?
pbsv,pbsv_05,pbsv_05_03,student,I need to discover SV signatures from PacBio HiFi aligned BAM with default parameters
pbsv,pbsv_05,pbsv_05_04,polite,Please discover SV signatures from PacBio HiFi aligned BAM with default parameters
pbsv,pbsv_05,pbsv_05_05,sysadmin,Use pbsv to discover SV signatures from PacBio HiFi aligned BAM with default parameters
pbsv,pbsv_05,pbsv_05_06,goal_oriented,I want to discover SV signatures from PacBio HiFi aligned BAM with default parameters
pbsv,pbsv_05,pbsv_05_07,expert,discover SV signatures PacBio HiFi aligned BAM default parameters
pbsv,pbsv_05,pbsv_05_08,detailed,I have data that I need to process: discover SV signatures from PacBio HiFi aligned BAM with default parameters
pbsv,pbsv_05,pbsv_05_09,informal,"Hey, can you help me discover SV signatures from PacBio HiFi aligned BAM with default parameters?"
pbsv,pbsv_05,pbsv_05_10,alternative,"With default parameters, discover SV signatures from PacBio HiFi aligned BAM"
pbsv,pbsv_06,pbsv_06_01,original,call SVs from a single sample's signature file with verbose output
pbsv,pbsv_06,pbsv_06_02,beginner,How do I call SVs from a single sample's signature file with verbose output?
pbsv,pbsv_06,pbsv_06_03,student,I need to call SVs from a single sample's signature file with verbose output
pbsv,pbsv_06,pbsv_06_04,polite,Please call SVs from a single sample's signature file with verbose output
pbsv,pbsv_06,pbsv_06_05,sysadmin,Use pbsv to call SVs from a single sample's signature file with verbose output
pbsv,pbsv_06,pbsv_06_06,goal_oriented,I want to call SVs from a single sample's signature file with verbose output
pbsv,pbsv_06,pbsv_06_07,expert,call SVs single sample's signature file verbose output
pbsv,pbsv_06,pbsv_06_08,detailed,I have data that I need to process: call SVs from a single sample's signature file with verbose output
pbsv,pbsv_06,pbsv_06_09,informal,"Hey, can you help me call SVs from a single sample's signature file with verbose output?"
pbsv,pbsv_06,pbsv_06_10,alternative,"With verbose output, call SVs from a single sample's signature file"
pbsv,pbsv_07,pbsv_07_01,original,call SVs jointly from multiple samples using multiple threads
pbsv,pbsv_07,pbsv_07_02,beginner,How do I call SVs jointly from multiple samples using multiple threads?
pbsv,pbsv_07,pbsv_07_03,student,I need to call SVs jointly from multiple samples using multiple threads
pbsv,pbsv_07,pbsv_07_04,polite,Please call SVs jointly from multiple samples using multiple threads
pbsv,pbsv_07,pbsv_07_05,sysadmin,Use pbsv to call SVs jointly from multiple samples using multiple threads
pbsv,pbsv_07,pbsv_07_06,goal_oriented,I want to call SVs jointly from multiple samples using multiple threads
pbsv,pbsv_07,pbsv_07_07,expert,call SVs jointly multiple samples multiple threads
pbsv,pbsv_07,pbsv_07_08,detailed,"I have data that I need to process: call SVs jointly from multiple samples using multiple threads, utilizing multiple CPU threads for speed"
pbsv,pbsv_07,pbsv_07_09,informal,"Hey, can you help me call SVs jointly from multiple samples using multiple threads?"
pbsv,pbsv_07,pbsv_07_10,alternative,Perform: call SVs jointly from multiple samples using multiple threads
pbsv,pbsv_08,pbsv_08_01,original,discover with tandem repeat annotation for better accuracy and write output to a file
pbsv,pbsv_08,pbsv_08_02,beginner,How do I discover with tandem repeat annotation for better accuracy and write output to a file?
pbsv,pbsv_08,pbsv_08_03,student,I need to discover with tandem repeat annotation for better accuracy and write output to a file
pbsv,pbsv_08,pbsv_08_04,polite,Please discover with tandem repeat annotation for better accuracy and write output to a file
pbsv,pbsv_08,pbsv_08_05,sysadmin,Use pbsv to discover with tandem repeat annotation for better accuracy and write output to a file
pbsv,pbsv_08,pbsv_08_06,goal_oriented,I want to discover with tandem repeat annotation for better accuracy and write output to a file
pbsv,pbsv_08,pbsv_08_07,expert,discover tandem repeat annotation better accuracy write output file
pbsv,pbsv_08,pbsv_08_08,detailed,"I have data that I need to process: discover with tandem repeat annotation for better accuracy and write output to a file, saving the result to a specified output file"
pbsv,pbsv_08,pbsv_08_09,informal,"Hey, can you help me discover with tandem repeat annotation for better accuracy and write output to a file?"
pbsv,pbsv_08,pbsv_08_10,alternative,Write output to a file after discover with tandem repeat annotation for better accuracy
pbsv,pbsv_09,pbsv_09_01,original,discover SV signatures from PacBio HiFi aligned BAM in quiet mode
pbsv,pbsv_09,pbsv_09_02,beginner,How do I discover SV signatures from PacBio HiFi aligned BAM in quiet mode?
pbsv,pbsv_09,pbsv_09_03,student,I need to discover SV signatures from PacBio HiFi aligned BAM in quiet mode
pbsv,pbsv_09,pbsv_09_04,polite,Please discover SV signatures from PacBio HiFi aligned BAM in quiet mode
pbsv,pbsv_09,pbsv_09_05,sysadmin,Use pbsv to discover SV signatures from PacBio HiFi aligned BAM in quiet mode
pbsv,pbsv_09,pbsv_09_06,goal_oriented,I want to discover SV signatures from PacBio HiFi aligned BAM in quiet mode
pbsv,pbsv_09,pbsv_09_07,expert,discover SV signatures PacBio HiFi aligned BAM quiet mode
pbsv,pbsv_09,pbsv_09_08,detailed,I have data that I need to process: discover SV signatures from PacBio HiFi aligned BAM in quiet mode
pbsv,pbsv_09,pbsv_09_09,informal,"Hey, can you help me discover SV signatures from PacBio HiFi aligned BAM in quiet mode?"
pbsv,pbsv_09,pbsv_09_10,alternative,Perform: discover SV signatures from PacBio HiFi aligned BAM in quiet mode
pbsv,pbsv_10,pbsv_10_01,original,call SVs from a single sample's signature file with default parameters
pbsv,pbsv_10,pbsv_10_02,beginner,How do I call SVs from a single sample's signature file with default parameters?
pbsv,pbsv_10,pbsv_10_03,student,I need to call SVs from a single sample's signature file with default parameters
pbsv,pbsv_10,pbsv_10_04,polite,Please call SVs from a single sample's signature file with default parameters
pbsv,pbsv_10,pbsv_10_05,sysadmin,Use pbsv to call SVs from a single sample's signature file with default parameters
pbsv,pbsv_10,pbsv_10_06,goal_oriented,I want to call SVs from a single sample's signature file with default parameters
pbsv,pbsv_10,pbsv_10_07,expert,call SVs single sample's signature file default parameters
pbsv,pbsv_10,pbsv_10_08,detailed,I have data that I need to process: call SVs from a single sample's signature file with default parameters
pbsv,pbsv_10,pbsv_10_09,informal,"Hey, can you help me call SVs from a single sample's signature file with default parameters?"
pbsv,pbsv_10,pbsv_10_10,alternative,"With default parameters, call SVs from a single sample's signature file"
perl,perl_01,perl_01_01,original,run a Perl script
perl,perl_01,perl_01_02,beginner,How do I run a Perl script?
perl,perl_01,perl_01_03,student,I need to run a Perl script
perl,perl_01,perl_01_04,polite,Please run a Perl script
perl,perl_01,perl_01_05,sysadmin,Use perl to run a Perl script
perl,perl_01,perl_01_06,goal_oriented,I want to run a Perl script
perl,perl_01,perl_01_07,expert,run Perl script
perl,perl_01,perl_01_08,detailed,I have data that I need to process: run a Perl script
perl,perl_01,perl_01_09,informal,"Hey, can you help me run a Perl script?"
perl,perl_01,perl_01_10,alternative,Perform: run a Perl script
perl,perl_02,perl_02_01,original,print the Perl version and module search paths
perl,perl_02,perl_02_02,beginner,How do I print the Perl version and module search paths?
perl,perl_02,perl_02_03,student,I need to print the Perl version and module search paths
perl,perl_02,perl_02_04,polite,Please print the Perl version and module search paths
perl,perl_02,perl_02_05,sysadmin,Use perl to print the Perl version and module search paths
perl,perl_02,perl_02_06,goal_oriented,I want to print the Perl version and module search paths
perl,perl_02,perl_02_07,expert,print Perl version module search paths
perl,perl_02,perl_02_08,detailed,I have data that I need to process: print the Perl version and module search paths
perl,perl_02,perl_02_09,informal,"Hey, can you help me print the Perl version and module search paths?"
perl,perl_02,perl_02_10,alternative,Module search paths after print the Perl version
perl,perl_03,perl_03_01,original,one-liner: print lines matching a pattern
perl,perl_03,perl_03_02,beginner,How do I one-liner: print lines matching a pattern?
perl,perl_03,perl_03_03,student,I need to one-liner: print lines matching a pattern
perl,perl_03,perl_03_04,polite,Please one-liner: print lines matching a pattern
perl,perl_03,perl_03_05,sysadmin,Use perl to one-liner: print lines matching a pattern
perl,perl_03,perl_03_06,goal_oriented,I want to one-liner: print lines matching a pattern
perl,perl_03,perl_03_07,expert,one-liner: print lines matching pattern
perl,perl_03,perl_03_08,detailed,I have data that I need to process: one-liner: print lines matching a pattern
perl,perl_03,perl_03_09,informal,"Hey, can you help me one-liner: print lines matching a pattern?"
perl,perl_03,perl_03_10,alternative,Perform: one-liner: print lines matching a pattern
perl,perl_04,perl_04_01,original,one-liner: extract specific columns from a TSV
perl,perl_04,perl_04_02,beginner,How do I one-liner: extract specific columns from a TSV?
perl,perl_04,perl_04_03,student,I need to one-liner: extract specific columns from a TSV
perl,perl_04,perl_04_04,polite,Please one-liner: extract specific columns from a TSV
perl,perl_04,perl_04_05,sysadmin,Use perl to one-liner: extract specific columns from a TSV
perl,perl_04,perl_04_06,goal_oriented,I want to one-liner: extract specific columns from a TSV
perl,perl_04,perl_04_07,expert,one-liner: extract specific columns TSV
perl,perl_04,perl_04_08,detailed,I have data that I need to process: one-liner: extract specific columns from a TSV
perl,perl_04,perl_04_09,informal,"Hey, can you help me one-liner: extract specific columns from a TSV?"
perl,perl_04,perl_04_10,alternative,Perform: one-liner: extract specific columns from a TSV
perl,perl_05,perl_05_01,original,in-place substitution (edit file directly)
perl,perl_05,perl_05_02,beginner,How do I in-place substitution (edit file directly)?
perl,perl_05,perl_05_03,student,I need to in-place substitution (edit file directly)
perl,perl_05,perl_05_04,polite,Please in-place substitution (edit file directly)
perl,perl_05,perl_05_05,sysadmin,Use perl to in-place substitution (edit file directly)
perl,perl_05,perl_05_06,goal_oriented,I want to in-place substitution (edit file directly)
perl,perl_05,perl_05_07,expert,in-place substitution (edit file directly)
perl,perl_05,perl_05_08,detailed,I have data that I need to process: in-place substitution (edit file directly)
perl,perl_05,perl_05_09,informal,"Hey, can you help me in-place substitution (edit file directly)?"
perl,perl_05,perl_05_10,alternative,Perform: in-place substitution (edit file directly)
perl,perl_06,perl_06_01,original,count FASTA sequences in a file
perl,perl_06,perl_06_02,beginner,How do I count FASTA sequences in a file?
perl,perl_06,perl_06_03,student,I need to count FASTA sequences in a file
perl,perl_06,perl_06_04,polite,Please count FASTA sequences in a file
perl,perl_06,perl_06_05,sysadmin,Use perl to count FASTA sequences in a file
perl,perl_06,perl_06_06,goal_oriented,I want to count FASTA sequences in a file
perl,perl_06,perl_06_07,expert,count FASTA sequences file
perl,perl_06,perl_06_08,detailed,I have data that I need to process: count FASTA sequences in a file
perl,perl_06,perl_06_09,informal,"Hey, can you help me count FASTA sequences in a file?"
perl,perl_06,perl_06_10,alternative,Perform: count FASTA sequences in a file
perl,perl_07,perl_07_01,original,install a module via CPAN one-liner
perl,perl_07,perl_07_02,beginner,How do I install a module via CPAN one-liner?
perl,perl_07,perl_07_03,student,I need to install a module via CPAN one-liner
perl,perl_07,perl_07_04,polite,Please install a module via CPAN one-liner
perl,perl_07,perl_07_05,sysadmin,Use perl to install a module via CPAN one-liner
perl,perl_07,perl_07_06,goal_oriented,I want to install a module via CPAN one-liner
perl,perl_07,perl_07_07,expert,install module via CPAN one-liner
perl,perl_07,perl_07_08,detailed,I have data that I need to process: install a module via CPAN one-liner
perl,perl_07,perl_07_09,informal,"Hey, can you help me install a module via CPAN one-liner?"
perl,perl_07,perl_07_10,alternative,Perform: install a module via CPAN one-liner
perl,perl_08,perl_08_01,original,set up a local user-space Perl module directory
perl,perl_08,perl_08_02,beginner,How do I set up a local user-space Perl module directory?
perl,perl_08,perl_08_03,student,I need to set up a local user-space Perl module directory
perl,perl_08,perl_08_04,polite,Please set up a local user-space Perl module directory
perl,perl_08,perl_08_05,sysadmin,Use perl to set up a local user-space Perl module directory
perl,perl_08,perl_08_06,goal_oriented,I want to set up a local user-space Perl module directory
perl,perl_08,perl_08_07,expert,set up local user-space Perl module directory
perl,perl_08,perl_08_08,detailed,I have data that I need to process: set up a local user-space Perl module directory
perl,perl_08,perl_08_09,informal,"Hey, can you help me set up a local user-space Perl module directory?"
perl,perl_08,perl_08_10,alternative,Perform: set up a local user-space Perl module directory
perl,perl_09,perl_09_01,original,check if a required module is installed
perl,perl_09,perl_09_02,beginner,How do I check if a required module is installed?
perl,perl_09,perl_09_03,student,I need to check if a required module is installed
perl,perl_09,perl_09_04,polite,Please check if a required module is installed
perl,perl_09,perl_09_05,sysadmin,Use perl to check if a required module is installed
perl,perl_09,perl_09_06,goal_oriented,I want to check if a required module is installed
perl,perl_09,perl_09_07,expert,check if required module is installed
perl,perl_09,perl_09_08,detailed,I have data that I need to process: check if a required module is installed
perl,perl_09,perl_09_09,informal,"Hey, can you help me check if a required module is installed?"
perl,perl_09,perl_09_10,alternative,Perform: check if a required module is installed
perl,perl_10,perl_10_01,original,run a bioinformatics script with a custom library path
perl,perl_10,perl_10_02,beginner,How do I run a bioinformatics script with a custom library path?
perl,perl_10,perl_10_03,student,I need to run a bioinformatics script with a custom library path
perl,perl_10,perl_10_04,polite,Please run a bioinformatics script with a custom library path
perl,perl_10,perl_10_05,sysadmin,Use perl to run a bioinformatics script with a custom library path
perl,perl_10,perl_10_06,goal_oriented,I want to run a bioinformatics script with a custom library path
perl,perl_10,perl_10_07,expert,run bioinformatics script custom library path
perl,perl_10,perl_10_08,detailed,I have data that I need to process: run a bioinformatics script with a custom library path
perl,perl_10,perl_10_09,informal,"Hey, can you help me run a bioinformatics script with a custom library path?"
perl,perl_10,perl_10_10,alternative,"With a custom library path, run a bioinformatics script"
picard,picard_01,picard_01_01,original,mark PCR duplicates in a sorted BAM file
picard,picard_01,picard_01_02,beginner,How do I mark PCR duplicates in a sorted BAM file?
picard,picard_01,picard_01_03,student,I need to mark PCR duplicates in a sorted BAM file
picard,picard_01,picard_01_04,polite,Please mark PCR duplicates in a sorted BAM file
picard,picard_01,picard_01_05,sysadmin,Use picard to mark PCR duplicates in a sorted BAM file
picard,picard_01,picard_01_06,goal_oriented,I want to mark PCR duplicates in a sorted BAM file
picard,picard_01,picard_01_07,expert,mark PCR duplicates sorted BAM file
picard,picard_01,picard_01_08,detailed,I have data that I need to process: mark PCR duplicates in a sorted BAM file
picard,picard_01,picard_01_09,informal,"Hey, can you help me mark PCR duplicates in a sorted BAM file?"
picard,picard_01,picard_01_10,alternative,Perform: mark PCR duplicates in a sorted BAM file
picard,picard_02,picard_02_01,original,add or replace read groups in a BAM file
picard,picard_02,picard_02_02,beginner,How do I add or replace read groups in a BAM file?
picard,picard_02,picard_02_03,student,I need to add or replace read groups in a BAM file
picard,picard_02,picard_02_04,polite,Please add or replace read groups in a BAM file
picard,picard_02,picard_02_05,sysadmin,Use picard to add or replace read groups in a BAM file
picard,picard_02,picard_02_06,goal_oriented,I want to add or replace read groups in a BAM file
picard,picard_02,picard_02_07,expert,add or replace read groups BAM file
picard,picard_02,picard_02_08,detailed,I have data that I need to process: add or replace read groups in a BAM file
picard,picard_02,picard_02_09,informal,"Hey, can you help me add or replace read groups in a BAM file?"
picard,picard_02,picard_02_10,alternative,Perform: add or replace read groups in a BAM file
picard,picard_03,picard_03_01,original,sort a BAM file by coordinate using Picard
picard,picard_03,picard_03_02,beginner,How do I sort a BAM file by coordinate using Picard?
picard,picard_03,picard_03_03,student,I need to sort a BAM file by coordinate using Picard
picard,picard_03,picard_03_04,polite,Please sort a BAM file by coordinate using Picard
picard,picard_03,picard_03_05,sysadmin,Use picard to sort a BAM file by coordinate using Picard
picard,picard_03,picard_03_06,goal_oriented,I want to sort a BAM file by coordinate using Picard
picard,picard_03,picard_03_07,expert,sort BAM file by coordinate Picard
picard,picard_03,picard_03_08,detailed,I have data that I need to process: sort a BAM file by coordinate using Picard
picard,picard_03,picard_03_09,informal,"Hey, can you help me sort a BAM file by coordinate using Picard?"
picard,picard_03,picard_03_10,alternative,Perform: sort a BAM file by coordinate using Picard
picard,picard_04,picard_04_01,original,collect alignment summary metrics from a BAM file
picard,picard_04,picard_04_02,beginner,How do I collect alignment summary metrics from a BAM file?
picard,picard_04,picard_04_03,student,I need to collect alignment summary metrics from a BAM file
picard,picard_04,picard_04_04,polite,Please collect alignment summary metrics from a BAM file
picard,picard_04,picard_04_05,sysadmin,Use picard to collect alignment summary metrics from a BAM file
picard,picard_04,picard_04_06,goal_oriented,I want to collect alignment summary metrics from a BAM file
picard,picard_04,picard_04_07,expert,collect alignment summary metrics BAM file
picard,picard_04,picard_04_08,detailed,I have data that I need to process: collect alignment summary metrics from a BAM file
picard,picard_04,picard_04_09,informal,"Hey, can you help me collect alignment summary metrics from a BAM file?"
picard,picard_04,picard_04_10,alternative,Perform: collect alignment summary metrics from a BAM file
picard,picard_05,picard_05_01,original,collect insert size distribution metrics from paired-end BAM
picard,picard_05,picard_05_02,beginner,How do I collect insert size distribution metrics from paired-end BAM?
picard,picard_05,picard_05_03,student,I need to collect insert size distribution metrics from paired-end BAM
picard,picard_05,picard_05_04,polite,Please collect insert size distribution metrics from paired-end BAM
picard,picard_05,picard_05_05,sysadmin,Use picard to collect insert size distribution metrics from paired-end BAM
picard,picard_05,picard_05_06,goal_oriented,I want to collect insert size distribution metrics from paired-end BAM
picard,picard_05,picard_05_07,expert,collect insert size distribution metrics paired-end BAM
picard,picard_05,picard_05_08,detailed,I have data that I need to process: collect insert size distribution metrics from paired-end BAM
picard,picard_05,picard_05_09,informal,"Hey, can you help me collect insert size distribution metrics from paired-end BAM?"
picard,picard_05,picard_05_10,alternative,Perform: collect insert size distribution metrics from paired-end BAM
picard,picard_06,picard_06_01,original,convert SAM to sorted BAM with index
picard,picard_06,picard_06_02,beginner,How do I convert SAM to sorted BAM with index?
picard,picard_06,picard_06_03,student,I need to convert SAM to sorted BAM with index
picard,picard_06,picard_06_04,polite,Please convert SAM to sorted BAM with index
picard,picard_06,picard_06_05,sysadmin,Use picard to convert SAM to sorted BAM with index
picard,picard_06,picard_06_06,goal_oriented,I want to convert SAM to sorted BAM with index
picard,picard_06,picard_06_07,expert,convert SAM sorted BAM index
picard,picard_06,picard_06_08,detailed,I have data that I need to process: convert SAM to sorted BAM with index
picard,picard_06,picard_06_09,informal,"Hey, can you help me convert SAM to sorted BAM with index?"
picard,picard_06,picard_06_10,alternative,"With index, convert SAM to sorted BAM"
picard,picard_07,picard_07_01,original,validate a BAM file for GATK compatibility
picard,picard_07,picard_07_02,beginner,How do I validate a BAM file for GATK compatibility?
picard,picard_07,picard_07_03,student,I need to validate a BAM file for GATK compatibility
picard,picard_07,picard_07_04,polite,Please validate a BAM file for GATK compatibility
picard,picard_07,picard_07_05,sysadmin,Use picard to validate a BAM file for GATK compatibility
picard,picard_07,picard_07_06,goal_oriented,I want to validate a BAM file for GATK compatibility
picard,picard_07,picard_07_07,expert,validate BAM file GATK compatibility
picard,picard_07,picard_07_08,detailed,I have data that I need to process: validate a BAM file for GATK compatibility
picard,picard_07,picard_07_09,informal,"Hey, can you help me validate a BAM file for GATK compatibility?"
picard,picard_07,picard_07_10,alternative,Perform: validate a BAM file for GATK compatibility
picard,picard_08,picard_08_01,original,mark PCR duplicates in a sorted BAM file and write output to a file
picard,picard_08,picard_08_02,beginner,How do I mark PCR duplicates in a sorted BAM file and write output to a file?
picard,picard_08,picard_08_03,student,I need to mark PCR duplicates in a sorted BAM file and write output to a file
picard,picard_08,picard_08_04,polite,Please mark PCR duplicates in a sorted BAM file and write output to a file
picard,picard_08,picard_08_05,sysadmin,Use picard to mark PCR duplicates in a sorted BAM file and write output to a file
picard,picard_08,picard_08_06,goal_oriented,I want to mark PCR duplicates in a sorted BAM file and write output to a file
picard,picard_08,picard_08_07,expert,mark PCR duplicates sorted BAM file write output file
picard,picard_08,picard_08_08,detailed,"I have data that I need to process: mark PCR duplicates in a sorted BAM file and write output to a file, saving the result to a specified output file"
picard,picard_08,picard_08_09,informal,"Hey, can you help me mark PCR duplicates in a sorted BAM file and write output to a file?"
picard,picard_08,picard_08_10,alternative,Write output to a file after mark PCR duplicates in a sorted BAM file
picard,picard_09,picard_09_01,original,add or replace read groups in a BAM file in quiet mode
picard,picard_09,picard_09_02,beginner,How do I add or replace read groups in a BAM file in quiet mode?
picard,picard_09,picard_09_03,student,I need to add or replace read groups in a BAM file in quiet mode
picard,picard_09,picard_09_04,polite,Please add or replace read groups in a BAM file in quiet mode
picard,picard_09,picard_09_05,sysadmin,Use picard to add or replace read groups in a BAM file in quiet mode
picard,picard_09,picard_09_06,goal_oriented,I want to add or replace read groups in a BAM file in quiet mode
picard,picard_09,picard_09_07,expert,add or replace read groups BAM file quiet mode
picard,picard_09,picard_09_08,detailed,I have data that I need to process: add or replace read groups in a BAM file in quiet mode
picard,picard_09,picard_09_09,informal,"Hey, can you help me add or replace read groups in a BAM file in quiet mode?"
picard,picard_09,picard_09_10,alternative,Perform: add or replace read groups in a BAM file in quiet mode
picard,picard_10,picard_10_01,original,sort a BAM file by coordinate using Picard with default parameters
picard,picard_10,picard_10_02,beginner,How do I sort a BAM file by coordinate using Picard with default parameters?
picard,picard_10,picard_10_03,student,I need to sort a BAM file by coordinate using Picard with default parameters
picard,picard_10,picard_10_04,polite,Please sort a BAM file by coordinate using Picard with default parameters
picard,picard_10,picard_10_05,sysadmin,Use picard to sort a BAM file by coordinate using Picard with default parameters
picard,picard_10,picard_10_06,goal_oriented,I want to sort a BAM file by coordinate using Picard with default parameters
picard,picard_10,picard_10_07,expert,sort BAM file by coordinate Picard default parameters
picard,picard_10,picard_10_08,detailed,I have data that I need to process: sort a BAM file by coordinate using Picard with default parameters
picard,picard_10,picard_10_09,informal,"Hey, can you help me sort a BAM file by coordinate using Picard with default parameters?"
picard,picard_10,picard_10_10,alternative,"With default parameters, sort a BAM file by coordinate using Picard"
pilon,pilon_01,pilon_01_01,original,polish a draft assembly with paired-end Illumina reads
pilon,pilon_01,pilon_01_02,beginner,How do I polish a draft assembly with paired-end Illumina reads?
pilon,pilon_01,pilon_01_03,student,I need to polish a draft assembly with paired-end Illumina reads
pilon,pilon_01,pilon_01_04,polite,Please polish a draft assembly with paired-end Illumina reads
pilon,pilon_01,pilon_01_05,sysadmin,Use pilon to polish a draft assembly with paired-end Illumina reads
pilon,pilon_01,pilon_01_06,goal_oriented,I want to polish a draft assembly with paired-end Illumina reads
pilon,pilon_01,pilon_01_07,expert,polish draft assembly paired-end Illumina reads
pilon,pilon_01,pilon_01_08,detailed,"I have data that I need to process: polish a draft assembly with paired-end Illumina reads, utilizing multiple CPU threads for speed, saving the result to a specified output file"
pilon,pilon_01,pilon_01_09,informal,"Hey, can you help me polish a draft assembly with paired-end Illumina reads?"
pilon,pilon_01,pilon_01_10,alternative,"With paired-end Illumina reads, polish a draft assembly"
pilon,pilon_02,pilon_02_01,original,polish with mate-pair and paired-end libraries combined
pilon,pilon_02,pilon_02_02,beginner,How do I polish with mate-pair and paired-end libraries combined?
pilon,pilon_02,pilon_02_03,student,I need to polish with mate-pair and paired-end libraries combined
pilon,pilon_02,pilon_02_04,polite,Please polish with mate-pair and paired-end libraries combined
pilon,pilon_02,pilon_02_05,sysadmin,Use pilon to polish with mate-pair and paired-end libraries combined
pilon,pilon_02,pilon_02_06,goal_oriented,I want to polish with mate-pair and paired-end libraries combined
pilon,pilon_02,pilon_02_07,expert,polish mate-pair paired-end libraries combined
pilon,pilon_02,pilon_02_08,detailed,"I have data that I need to process: polish with mate-pair and paired-end libraries combined, utilizing multiple CPU threads for speed, saving the result to a specified output file"
pilon,pilon_02,pilon_02_09,informal,"Hey, can you help me polish with mate-pair and paired-end libraries combined?"
pilon,pilon_02,pilon_02_10,alternative,Paired-end libraries combined after polish with mate-pair
pilon,pilon_03,pilon_03_01,original,run Pilon fixing only SNPs and small indels (not structural)
pilon,pilon_03,pilon_03_02,beginner,How do I run Pilon fixing only SNPs and small indels (not structural)?
pilon,pilon_03,pilon_03_03,student,I need to run Pilon fixing only SNPs and small indels (not structural)
pilon,pilon_03,pilon_03_04,polite,Please run Pilon fixing only SNPs and small indels (not structural)
pilon,pilon_03,pilon_03_05,sysadmin,Use pilon to run Pilon fixing only SNPs and small indels (not structural)
pilon,pilon_03,pilon_03_06,goal_oriented,I want to run Pilon fixing only SNPs and small indels (not structural)
pilon,pilon_03,pilon_03_07,expert,run Pilon fixing only SNPs small indels (not structural)
pilon,pilon_03,pilon_03_08,detailed,"I have data that I need to process: run Pilon fixing only SNPs and small indels (not structural), utilizing multiple CPU threads for speed, saving the result to a specified output file"
pilon,pilon_03,pilon_03_09,informal,"Hey, can you help me run Pilon fixing only SNPs and small indels (not structural)?"
pilon,pilon_03,pilon_03_10,alternative,Small indels (not structural) after run Pilon fixing only SNPs
pilon,pilon_04,pilon_04_01,original,generate a VCF of variants found in the assembly
pilon,pilon_04,pilon_04_02,beginner,How do I generate a VCF of variants found in the assembly?
pilon,pilon_04,pilon_04_03,student,I need to generate a VCF of variants found in the assembly
pilon,pilon_04,pilon_04_04,polite,Please generate a VCF of variants found in the assembly
pilon,pilon_04,pilon_04_05,sysadmin,Use pilon to generate a VCF of variants found in the assembly
pilon,pilon_04,pilon_04_06,goal_oriented,I want to generate a VCF of variants found in the assembly
pilon,pilon_04,pilon_04_07,expert,generate VCF of variants found assembly
pilon,pilon_04,pilon_04_08,detailed,"I have data that I need to process: generate a VCF of variants found in the assembly, utilizing multiple CPU threads for speed, saving the result to a specified output file"
pilon,pilon_04,pilon_04_09,informal,"Hey, can you help me generate a VCF of variants found in the assembly?"
pilon,pilon_04,pilon_04_10,alternative,Perform: generate a VCF of variants found in the assembly
pilon,pilon_05,pilon_05_01,original,"polish a specific set of sequences (e.g., unplaced contigs only)"
pilon,pilon_05,pilon_05_02,beginner,"How do I polish a specific set of sequences (e.g., unplaced contigs only)?"
pilon,pilon_05,pilon_05_03,student,"I need to polish a specific set of sequences (e.g., unplaced contigs only)"
pilon,pilon_05,pilon_05_04,polite,"Please polish a specific set of sequences (e.g., unplaced contigs only)"
pilon,pilon_05,pilon_05_05,sysadmin,"Use pilon to polish a specific set of sequences (e.g., unplaced contigs only)"
pilon,pilon_05,pilon_05_06,goal_oriented,"I want to polish a specific set of sequences (e.g., unplaced contigs only)"
pilon,pilon_05,pilon_05_07,expert,"polish specific set of sequences (e.g., unplaced contigs only)"
pilon,pilon_05,pilon_05_08,detailed,"I have data that I need to process: polish a specific set of sequences (e.g., unplaced contigs only), utilizing multiple CPU threads for speed, saving the result to a specified output file"
pilon,pilon_05,pilon_05_09,informal,"Hey, can you help me polish a specific set of sequences (e.g., unplaced contigs only)?"
pilon,pilon_05,pilon_05_10,alternative,"Perform: polish a specific set of sequences (e.g., unplaced contigs only)"
pilon,pilon_06,pilon_06_01,original,second round of polishing after re-aligning reads to first round output
pilon,pilon_06,pilon_06_02,beginner,How do I second round of polishing after re-aligning reads to first round output?
pilon,pilon_06,pilon_06_03,student,I need to second round of polishing after re-aligning reads to first round output
pilon,pilon_06,pilon_06_04,polite,Please second round of polishing after re-aligning reads to first round output
pilon,pilon_06,pilon_06_05,sysadmin,Use pilon to second round of polishing after re-aligning reads to first round output
pilon,pilon_06,pilon_06_06,goal_oriented,I want to second round of polishing after re-aligning reads to first round output
pilon,pilon_06,pilon_06_07,expert,second round of polishing after re-aligning reads first round output
pilon,pilon_06,pilon_06_08,detailed,"I have data that I need to process: second round of polishing after re-aligning reads to first round output, utilizing multiple CPU threads for speed, saving the result to a specified output file"
pilon,pilon_06,pilon_06_09,informal,"Hey, can you help me second round of polishing after re-aligning reads to first round output?"
pilon,pilon_06,pilon_06_10,alternative,Output first round output by performing: second round of polishing after re-aligning reads
pilon,pilon_07,pilon_07_01,original,polish a draft assembly with paired-end Illumina reads using multiple threads
pilon,pilon_07,pilon_07_02,beginner,How do I polish a draft assembly with paired-end Illumina reads using multiple threads?
pilon,pilon_07,pilon_07_03,student,I need to polish a draft assembly with paired-end Illumina reads using multiple threads
pilon,pilon_07,pilon_07_04,polite,Please polish a draft assembly with paired-end Illumina reads using multiple threads
pilon,pilon_07,pilon_07_05,sysadmin,Use pilon to polish a draft assembly with paired-end Illumina reads using multiple threads
pilon,pilon_07,pilon_07_06,goal_oriented,I want to polish a draft assembly with paired-end Illumina reads using multiple threads
pilon,pilon_07,pilon_07_07,expert,polish draft assembly paired-end Illumina reads multiple threads
pilon,pilon_07,pilon_07_08,detailed,"I have data that I need to process: polish a draft assembly with paired-end Illumina reads using multiple threads, utilizing multiple CPU threads for speed, saving the result to a specified output file"
pilon,pilon_07,pilon_07_09,informal,"Hey, can you help me polish a draft assembly with paired-end Illumina reads using multiple threads?"
pilon,pilon_07,pilon_07_10,alternative,"With paired-end Illumina reads using multiple threads, polish a draft assembly"
pilon,pilon_08,pilon_08_01,original,polish with mate-pair and paired-end libraries combined and write output to a file
pilon,pilon_08,pilon_08_02,beginner,How do I polish with mate-pair and paired-end libraries combined and write output to a file?
pilon,pilon_08,pilon_08_03,student,I need to polish with mate-pair and paired-end libraries combined and write output to a file
pilon,pilon_08,pilon_08_04,polite,Please polish with mate-pair and paired-end libraries combined and write output to a file
pilon,pilon_08,pilon_08_05,sysadmin,Use pilon to polish with mate-pair and paired-end libraries combined and write output to a file
pilon,pilon_08,pilon_08_06,goal_oriented,I want to polish with mate-pair and paired-end libraries combined and write output to a file
pilon,pilon_08,pilon_08_07,expert,polish mate-pair paired-end libraries combined write output file
pilon,pilon_08,pilon_08_08,detailed,"I have data that I need to process: polish with mate-pair and paired-end libraries combined and write output to a file, utilizing multiple CPU threads for speed, saving the result to a specified output file"
pilon,pilon_08,pilon_08_09,informal,"Hey, can you help me polish with mate-pair and paired-end libraries combined and write output to a file?"
pilon,pilon_08,pilon_08_10,alternative,Paired-end libraries combined and write output to a file after polish with mate-pair
pilon,pilon_09,pilon_09_01,original,run Pilon fixing only SNPs and small indels (not structural) in quiet mode
pilon,pilon_09,pilon_09_02,beginner,How do I run Pilon fixing only SNPs and small indels (not structural) in quiet mode?
pilon,pilon_09,pilon_09_03,student,I need to run Pilon fixing only SNPs and small indels (not structural) in quiet mode
pilon,pilon_09,pilon_09_04,polite,Please run Pilon fixing only SNPs and small indels (not structural) in quiet mode
pilon,pilon_09,pilon_09_05,sysadmin,Use pilon to run Pilon fixing only SNPs and small indels (not structural) in quiet mode
pilon,pilon_09,pilon_09_06,goal_oriented,I want to run Pilon fixing only SNPs and small indels (not structural) in quiet mode
pilon,pilon_09,pilon_09_07,expert,run Pilon fixing only SNPs small indels (not structural) quiet mode
pilon,pilon_09,pilon_09_08,detailed,"I have data that I need to process: run Pilon fixing only SNPs and small indels (not structural) in quiet mode, utilizing multiple CPU threads for speed, saving the result to a specified output file"
pilon,pilon_09,pilon_09_09,informal,"Hey, can you help me run Pilon fixing only SNPs and small indels (not structural) in quiet mode?"
pilon,pilon_09,pilon_09_10,alternative,Small indels (not structural) in quiet mode after run Pilon fixing only SNPs
pilon,pilon_10,pilon_10_01,original,generate a VCF of variants found in the assembly with default parameters
pilon,pilon_10,pilon_10_02,beginner,How do I generate a VCF of variants found in the assembly with default parameters?
pilon,pilon_10,pilon_10_03,student,I need to generate a VCF of variants found in the assembly with default parameters
pilon,pilon_10,pilon_10_04,polite,Please generate a VCF of variants found in the assembly with default parameters
pilon,pilon_10,pilon_10_05,sysadmin,Use pilon to generate a VCF of variants found in the assembly with default parameters
pilon,pilon_10,pilon_10_06,goal_oriented,I want to generate a VCF of variants found in the assembly with default parameters
pilon,pilon_10,pilon_10_07,expert,generate VCF of variants found assembly default parameters
pilon,pilon_10,pilon_10_08,detailed,"I have data that I need to process: generate a VCF of variants found in the assembly with default parameters, utilizing multiple CPU threads for speed, saving the result to a specified output file"
pilon,pilon_10,pilon_10_09,informal,"Hey, can you help me generate a VCF of variants found in the assembly with default parameters?"
pilon,pilon_10,pilon_10_10,alternative,"With default parameters, generate a VCF of variants found in the assembly"
plink2,plink2_01,plink2_01_01,original,convert VCF to PLINK2 binary format
plink2,plink2_01,plink2_01_02,beginner,How do I convert VCF to PLINK2 binary format?
plink2,plink2_01,plink2_01_03,student,I need to convert VCF to PLINK2 binary format
plink2,plink2_01,plink2_01_04,polite,Please convert VCF to PLINK2 binary format
plink2,plink2_01,plink2_01_05,sysadmin,Use plink2 to convert VCF to PLINK2 binary format
plink2,plink2_01,plink2_01_06,goal_oriented,I want to convert VCF to PLINK2 binary format
plink2,plink2_01,plink2_01_07,expert,convert VCF PLINK2 binary format
plink2,plink2_01,plink2_01_08,detailed,I have data that I need to process: convert VCF to PLINK2 binary format
plink2,plink2_01,plink2_01_09,informal,"Hey, can you help me convert VCF to PLINK2 binary format?"
plink2,plink2_01,plink2_01_10,alternative,Output PLINK2 binary format by performing: convert VCF
plink2,plink2_02,plink2_02_01,original,perform quality control filtering on PLINK dataset
plink2,plink2_02,plink2_02_02,beginner,How do I perform quality control filtering on PLINK dataset?
plink2,plink2_02,plink2_02_03,student,I need to perform quality control filtering on PLINK dataset
plink2,plink2_02,plink2_02_04,polite,Please perform quality control filtering on PLINK dataset
plink2,plink2_02,plink2_02_05,sysadmin,Use plink2 to perform quality control filtering on PLINK dataset
plink2,plink2_02,plink2_02_06,goal_oriented,I want to perform quality control filtering on PLINK dataset
plink2,plink2_02,plink2_02_07,expert,perform quality control filtering on PLINK dataset
plink2,plink2_02,plink2_02_08,detailed,I have data that I need to process: perform quality control filtering on PLINK dataset
plink2,plink2_02,plink2_02_09,informal,"Hey, can you help me perform quality control filtering on PLINK dataset?"
plink2,plink2_02,plink2_02_10,alternative,Perform: perform quality control filtering on PLINK dataset
plink2,plink2_03,plink2_03_01,original,perform LD pruning and compute PCA
plink2,plink2_03,plink2_03_02,beginner,How do I perform LD pruning and compute PCA?
plink2,plink2_03,plink2_03_03,student,I need to perform LD pruning and compute PCA
plink2,plink2_03,plink2_03_04,polite,Please perform LD pruning and compute PCA
plink2,plink2_03,plink2_03_05,sysadmin,Use plink2 to perform LD pruning and compute PCA
plink2,plink2_03,plink2_03_06,goal_oriented,I want to perform LD pruning and compute PCA
plink2,plink2_03,plink2_03_07,expert,perform LD pruning compute PCA
plink2,plink2_03,plink2_03_08,detailed,I have data that I need to process: perform LD pruning and compute PCA
plink2,plink2_03,plink2_03_09,informal,"Hey, can you help me perform LD pruning and compute PCA?"
plink2,plink2_03,plink2_03_10,alternative,Compute PCA after perform LD pruning
plink2,plink2_04,plink2_04_01,original,run genome-wide association study (GWAS) for binary phenotype
plink2,plink2_04,plink2_04_02,beginner,How do I run genome-wide association study (GWAS) for binary phenotype?
plink2,plink2_04,plink2_04_03,student,I need to run genome-wide association study (GWAS) for binary phenotype
plink2,plink2_04,plink2_04_04,polite,Please run genome-wide association study (GWAS) for binary phenotype
plink2,plink2_04,plink2_04_05,sysadmin,Use plink2 to run genome-wide association study (GWAS) for binary phenotype
plink2,plink2_04,plink2_04_06,goal_oriented,I want to run genome-wide association study (GWAS) for binary phenotype
plink2,plink2_04,plink2_04_07,expert,run genome-wide association study (GWAS) binary phenotype
plink2,plink2_04,plink2_04_08,detailed,I have data that I need to process: run genome-wide association study (GWAS) for binary phenotype
plink2,plink2_04,plink2_04_09,informal,"Hey, can you help me run genome-wide association study (GWAS) for binary phenotype?"
plink2,plink2_04,plink2_04_10,alternative,Perform: run genome-wide association study (GWAS) for binary phenotype
plink2,plink2_05,plink2_05_01,original,compute kinship/relatedness matrix
plink2,plink2_05,plink2_05_02,beginner,How do I compute kinship/relatedness matrix?
plink2,plink2_05,plink2_05_03,student,I need to compute kinship/relatedness matrix
plink2,plink2_05,plink2_05_04,polite,Please compute kinship/relatedness matrix
plink2,plink2_05,plink2_05_05,sysadmin,Use plink2 to compute kinship/relatedness matrix
plink2,plink2_05,plink2_05_06,goal_oriented,I want to compute kinship/relatedness matrix
plink2,plink2_05,plink2_05_07,expert,compute kinship/relatedness matrix
plink2,plink2_05,plink2_05_08,detailed,I have data that I need to process: compute kinship/relatedness matrix
plink2,plink2_05,plink2_05_09,informal,"Hey, can you help me compute kinship/relatedness matrix?"
plink2,plink2_05,plink2_05_10,alternative,Perform: compute kinship/relatedness matrix
plink2,plink2_06,plink2_06_01,original,convert VCF to PLINK2 binary format with verbose output
plink2,plink2_06,plink2_06_02,beginner,How do I convert VCF to PLINK2 binary format with verbose output?
plink2,plink2_06,plink2_06_03,student,I need to convert VCF to PLINK2 binary format with verbose output
plink2,plink2_06,plink2_06_04,polite,Please convert VCF to PLINK2 binary format with verbose output
plink2,plink2_06,plink2_06_05,sysadmin,Use plink2 to convert VCF to PLINK2 binary format with verbose output
plink2,plink2_06,plink2_06_06,goal_oriented,I want to convert VCF to PLINK2 binary format with verbose output
plink2,plink2_06,plink2_06_07,expert,convert VCF PLINK2 binary format verbose output
plink2,plink2_06,plink2_06_08,detailed,I have data that I need to process: convert VCF to PLINK2 binary format with verbose output
plink2,plink2_06,plink2_06_09,informal,"Hey, can you help me convert VCF to PLINK2 binary format with verbose output?"
plink2,plink2_06,plink2_06_10,alternative,"With verbose output, convert VCF to PLINK2 binary format"
plink2,plink2_07,plink2_07_01,original,perform quality control filtering on PLINK dataset using multiple threads
plink2,plink2_07,plink2_07_02,beginner,How do I perform quality control filtering on PLINK dataset using multiple threads?
plink2,plink2_07,plink2_07_03,student,I need to perform quality control filtering on PLINK dataset using multiple threads
plink2,plink2_07,plink2_07_04,polite,Please perform quality control filtering on PLINK dataset using multiple threads
plink2,plink2_07,plink2_07_05,sysadmin,Use plink2 to perform quality control filtering on PLINK dataset using multiple threads
plink2,plink2_07,plink2_07_06,goal_oriented,I want to perform quality control filtering on PLINK dataset using multiple threads
plink2,plink2_07,plink2_07_07,expert,perform quality control filtering on PLINK dataset multiple threads
plink2,plink2_07,plink2_07_08,detailed,"I have data that I need to process: perform quality control filtering on PLINK dataset using multiple threads, utilizing multiple CPU threads for speed"
plink2,plink2_07,plink2_07_09,informal,"Hey, can you help me perform quality control filtering on PLINK dataset using multiple threads?"
plink2,plink2_07,plink2_07_10,alternative,Perform: perform quality control filtering on PLINK dataset using multiple threads
plink2,plink2_08,plink2_08_01,original,perform LD pruning and compute PCA and write output to a file
plink2,plink2_08,plink2_08_02,beginner,How do I perform LD pruning and compute PCA and write output to a file?
plink2,plink2_08,plink2_08_03,student,I need to perform LD pruning and compute PCA and write output to a file
plink2,plink2_08,plink2_08_04,polite,Please perform LD pruning and compute PCA and write output to a file
plink2,plink2_08,plink2_08_05,sysadmin,Use plink2 to perform LD pruning and compute PCA and write output to a file
plink2,plink2_08,plink2_08_06,goal_oriented,I want to perform LD pruning and compute PCA and write output to a file
plink2,plink2_08,plink2_08_07,expert,perform LD pruning compute PCA write output file
plink2,plink2_08,plink2_08_08,detailed,"I have data that I need to process: perform LD pruning and compute PCA and write output to a file, saving the result to a specified output file"
plink2,plink2_08,plink2_08_09,informal,"Hey, can you help me perform LD pruning and compute PCA and write output to a file?"
plink2,plink2_08,plink2_08_10,alternative,Compute PCA and write output to a file after perform LD pruning
plink2,plink2_09,plink2_09_01,original,run genome-wide association study (GWAS) for binary phenotype in quiet mode
plink2,plink2_09,plink2_09_02,beginner,How do I run genome-wide association study (GWAS) for binary phenotype in quiet mode?
plink2,plink2_09,plink2_09_03,student,I need to run genome-wide association study (GWAS) for binary phenotype in quiet mode
plink2,plink2_09,plink2_09_04,polite,Please run genome-wide association study (GWAS) for binary phenotype in quiet mode
plink2,plink2_09,plink2_09_05,sysadmin,Use plink2 to run genome-wide association study (GWAS) for binary phenotype in quiet mode
plink2,plink2_09,plink2_09_06,goal_oriented,I want to run genome-wide association study (GWAS) for binary phenotype in quiet mode
plink2,plink2_09,plink2_09_07,expert,run genome-wide association study (GWAS) binary phenotype quiet mode
plink2,plink2_09,plink2_09_08,detailed,I have data that I need to process: run genome-wide association study (GWAS) for binary phenotype in quiet mode
plink2,plink2_09,plink2_09_09,informal,"Hey, can you help me run genome-wide association study (GWAS) for binary phenotype in quiet mode?"
plink2,plink2_09,plink2_09_10,alternative,Perform: run genome-wide association study (GWAS) for binary phenotype in quiet mode
plink2,plink2_10,plink2_10_01,original,compute kinship/relatedness matrix with default parameters
plink2,plink2_10,plink2_10_02,beginner,How do I compute kinship/relatedness matrix with default parameters?
plink2,plink2_10,plink2_10_03,student,I need to compute kinship/relatedness matrix with default parameters
plink2,plink2_10,plink2_10_04,polite,Please compute kinship/relatedness matrix with default parameters
plink2,plink2_10,plink2_10_05,sysadmin,Use plink2 to compute kinship/relatedness matrix with default parameters
plink2,plink2_10,plink2_10_06,goal_oriented,I want to compute kinship/relatedness matrix with default parameters
plink2,plink2_10,plink2_10_07,expert,compute kinship/relatedness matrix default parameters
plink2,plink2_10,plink2_10_08,detailed,I have data that I need to process: compute kinship/relatedness matrix with default parameters
plink2,plink2_10,plink2_10_09,informal,"Hey, can you help me compute kinship/relatedness matrix with default parameters?"
plink2,plink2_10,plink2_10_10,alternative,"With default parameters, compute kinship/relatedness matrix"
porechop,porechop_01,porechop_01_01,original,trim adapters from Oxford Nanopore FASTQ reads
porechop,porechop_01,porechop_01_02,beginner,How do I trim adapters from Oxford Nanopore FASTQ reads?
porechop,porechop_01,porechop_01_03,student,I need to trim adapters from Oxford Nanopore FASTQ reads
porechop,porechop_01,porechop_01_04,polite,Please trim adapters from Oxford Nanopore FASTQ reads
porechop,porechop_01,porechop_01_05,sysadmin,Use porechop to trim adapters from Oxford Nanopore FASTQ reads
porechop,porechop_01,porechop_01_06,goal_oriented,I want to trim adapters from Oxford Nanopore FASTQ reads
porechop,porechop_01,porechop_01_07,expert,trim adapters Oxford Nanopore FASTQ reads
porechop,porechop_01,porechop_01_08,detailed,"I have data that I need to process: trim adapters from Oxford Nanopore FASTQ reads, utilizing multiple CPU threads for speed, saving the result to a specified output file"
porechop,porechop_01,porechop_01_09,informal,"Hey, can you help me trim adapters from Oxford Nanopore FASTQ reads?"
porechop,porechop_01,porechop_01_10,alternative,Perform: trim adapters from Oxford Nanopore FASTQ reads
porechop,porechop_02,porechop_02_01,original,trim adapters and remove chimeric reads
porechop,porechop_02,porechop_02_02,beginner,How do I trim adapters and remove chimeric reads?
porechop,porechop_02,porechop_02_03,student,I need to trim adapters and remove chimeric reads
porechop,porechop_02,porechop_02_04,polite,Please trim adapters and remove chimeric reads
porechop,porechop_02,porechop_02_05,sysadmin,Use porechop to trim adapters and remove chimeric reads
porechop,porechop_02,porechop_02_06,goal_oriented,I want to trim adapters and remove chimeric reads
porechop,porechop_02,porechop_02_07,expert,trim adapters remove chimeric reads
porechop,porechop_02,porechop_02_08,detailed,"I have data that I need to process: trim adapters and remove chimeric reads, utilizing multiple CPU threads for speed, saving the result to a specified output file"
porechop,porechop_02,porechop_02_09,informal,"Hey, can you help me trim adapters and remove chimeric reads?"
porechop,porechop_02,porechop_02_10,alternative,Remove chimeric reads after trim adapters
porechop,porechop_03,porechop_03_01,original,demultiplex barcoded ONT reads into separate files
porechop,porechop_03,porechop_03_02,beginner,How do I demultiplex barcoded ONT reads into separate files?
porechop,porechop_03,porechop_03_03,student,I need to demultiplex barcoded ONT reads into separate files
porechop,porechop_03,porechop_03_04,polite,Please demultiplex barcoded ONT reads into separate files
porechop,porechop_03,porechop_03_05,sysadmin,Use porechop to demultiplex barcoded ONT reads into separate files
porechop,porechop_03,porechop_03_06,goal_oriented,I want to demultiplex barcoded ONT reads into separate files
porechop,porechop_03,porechop_03_07,expert,demultiplex barcoded ONT reads separate files
porechop,porechop_03,porechop_03_08,detailed,"I have data that I need to process: demultiplex barcoded ONT reads into separate files, utilizing multiple CPU threads for speed"
porechop,porechop_03,porechop_03_09,informal,"Hey, can you help me demultiplex barcoded ONT reads into separate files?"
porechop,porechop_03,porechop_03_10,alternative,Perform: demultiplex barcoded ONT reads into separate files
porechop,porechop_04,porechop_04_01,original,trim adapters and set minimum length output
porechop,porechop_04,porechop_04_02,beginner,How do I trim adapters and set minimum length output?
porechop,porechop_04,porechop_04_03,student,I need to trim adapters and set minimum length output
porechop,porechop_04,porechop_04_04,polite,Please trim adapters and set minimum length output
porechop,porechop_04,porechop_04_05,sysadmin,Use porechop to trim adapters and set minimum length output
porechop,porechop_04,porechop_04_06,goal_oriented,I want to trim adapters and set minimum length output
porechop,porechop_04,porechop_04_07,expert,trim adapters set minimum length output
porechop,porechop_04,porechop_04_08,detailed,"I have data that I need to process: trim adapters and set minimum length output, utilizing multiple CPU threads for speed, saving the result to a specified output file"
porechop,porechop_04,porechop_04_09,informal,"Hey, can you help me trim adapters and set minimum length output?"
porechop,porechop_04,porechop_04_10,alternative,Set minimum length output after trim adapters
porechop,porechop_05,porechop_05_01,original,trim adapters from Oxford Nanopore FASTQ reads with default parameters
porechop,porechop_05,porechop_05_02,beginner,How do I trim adapters from Oxford Nanopore FASTQ reads with default parameters?
porechop,porechop_05,porechop_05_03,student,I need to trim adapters from Oxford Nanopore FASTQ reads with default parameters
porechop,porechop_05,porechop_05_04,polite,Please trim adapters from Oxford Nanopore FASTQ reads with default parameters
porechop,porechop_05,porechop_05_05,sysadmin,Use porechop to trim adapters from Oxford Nanopore FASTQ reads with default parameters
porechop,porechop_05,porechop_05_06,goal_oriented,I want to trim adapters from Oxford Nanopore FASTQ reads with default parameters
porechop,porechop_05,porechop_05_07,expert,trim adapters Oxford Nanopore FASTQ reads default parameters
porechop,porechop_05,porechop_05_08,detailed,"I have data that I need to process: trim adapters from Oxford Nanopore FASTQ reads with default parameters, utilizing multiple CPU threads for speed, saving the result to a specified output file"
porechop,porechop_05,porechop_05_09,informal,"Hey, can you help me trim adapters from Oxford Nanopore FASTQ reads with default parameters?"
porechop,porechop_05,porechop_05_10,alternative,"With default parameters, trim adapters from Oxford Nanopore FASTQ reads"
porechop,porechop_06,porechop_06_01,original,trim adapters and remove chimeric reads with verbose output
porechop,porechop_06,porechop_06_02,beginner,How do I trim adapters and remove chimeric reads with verbose output?
porechop,porechop_06,porechop_06_03,student,I need to trim adapters and remove chimeric reads with verbose output
porechop,porechop_06,porechop_06_04,polite,Please trim adapters and remove chimeric reads with verbose output
porechop,porechop_06,porechop_06_05,sysadmin,Use porechop to trim adapters and remove chimeric reads with verbose output
porechop,porechop_06,porechop_06_06,goal_oriented,I want to trim adapters and remove chimeric reads with verbose output
porechop,porechop_06,porechop_06_07,expert,trim adapters remove chimeric reads verbose output
porechop,porechop_06,porechop_06_08,detailed,"I have data that I need to process: trim adapters and remove chimeric reads with verbose output, utilizing multiple CPU threads for speed, saving the result to a specified output file"
porechop,porechop_06,porechop_06_09,informal,"Hey, can you help me trim adapters and remove chimeric reads with verbose output?"
porechop,porechop_06,porechop_06_10,alternative,Remove chimeric reads with verbose output after trim adapters
porechop,porechop_07,porechop_07_01,original,demultiplex barcoded ONT reads into separate files using multiple threads
porechop,porechop_07,porechop_07_02,beginner,How do I demultiplex barcoded ONT reads into separate files using multiple threads?
porechop,porechop_07,porechop_07_03,student,I need to demultiplex barcoded ONT reads into separate files using multiple threads
porechop,porechop_07,porechop_07_04,polite,Please demultiplex barcoded ONT reads into separate files using multiple threads
porechop,porechop_07,porechop_07_05,sysadmin,Use porechop to demultiplex barcoded ONT reads into separate files using multiple threads
porechop,porechop_07,porechop_07_06,goal_oriented,I want to demultiplex barcoded ONT reads into separate files using multiple threads
porechop,porechop_07,porechop_07_07,expert,demultiplex barcoded ONT reads separate files multiple threads
porechop,porechop_07,porechop_07_08,detailed,"I have data that I need to process: demultiplex barcoded ONT reads into separate files using multiple threads, utilizing multiple CPU threads for speed"
porechop,porechop_07,porechop_07_09,informal,"Hey, can you help me demultiplex barcoded ONT reads into separate files using multiple threads?"
porechop,porechop_07,porechop_07_10,alternative,Perform: demultiplex barcoded ONT reads into separate files using multiple threads
porechop,porechop_08,porechop_08_01,original,trim adapters and set minimum length output and write output to a file
porechop,porechop_08,porechop_08_02,beginner,How do I trim adapters and set minimum length output and write output to a file?
porechop,porechop_08,porechop_08_03,student,I need to trim adapters and set minimum length output and write output to a file
porechop,porechop_08,porechop_08_04,polite,Please trim adapters and set minimum length output and write output to a file
porechop,porechop_08,porechop_08_05,sysadmin,Use porechop to trim adapters and set minimum length output and write output to a file
porechop,porechop_08,porechop_08_06,goal_oriented,I want to trim adapters and set minimum length output and write output to a file
porechop,porechop_08,porechop_08_07,expert,trim adapters set minimum length output write output file
porechop,porechop_08,porechop_08_08,detailed,"I have data that I need to process: trim adapters and set minimum length output and write output to a file, utilizing multiple CPU threads for speed, saving the result to a specified output file"
porechop,porechop_08,porechop_08_09,informal,"Hey, can you help me trim adapters and set minimum length output and write output to a file?"
porechop,porechop_08,porechop_08_10,alternative,Set minimum length output and write output to a file after trim adapters
porechop,porechop_09,porechop_09_01,original,trim adapters from Oxford Nanopore FASTQ reads in quiet mode
porechop,porechop_09,porechop_09_02,beginner,How do I trim adapters from Oxford Nanopore FASTQ reads in quiet mode?
porechop,porechop_09,porechop_09_03,student,I need to trim adapters from Oxford Nanopore FASTQ reads in quiet mode
porechop,porechop_09,porechop_09_04,polite,Please trim adapters from Oxford Nanopore FASTQ reads in quiet mode
porechop,porechop_09,porechop_09_05,sysadmin,Use porechop to trim adapters from Oxford Nanopore FASTQ reads in quiet mode
porechop,porechop_09,porechop_09_06,goal_oriented,I want to trim adapters from Oxford Nanopore FASTQ reads in quiet mode
porechop,porechop_09,porechop_09_07,expert,trim adapters Oxford Nanopore FASTQ reads quiet mode
porechop,porechop_09,porechop_09_08,detailed,"I have data that I need to process: trim adapters from Oxford Nanopore FASTQ reads in quiet mode, utilizing multiple CPU threads for speed, saving the result to a specified output file"
porechop,porechop_09,porechop_09_09,informal,"Hey, can you help me trim adapters from Oxford Nanopore FASTQ reads in quiet mode?"
porechop,porechop_09,porechop_09_10,alternative,Perform: trim adapters from Oxford Nanopore FASTQ reads in quiet mode
porechop,porechop_10,porechop_10_01,original,trim adapters and remove chimeric reads with default parameters
porechop,porechop_10,porechop_10_02,beginner,How do I trim adapters and remove chimeric reads with default parameters?
porechop,porechop_10,porechop_10_03,student,I need to trim adapters and remove chimeric reads with default parameters
porechop,porechop_10,porechop_10_04,polite,Please trim adapters and remove chimeric reads with default parameters
porechop,porechop_10,porechop_10_05,sysadmin,Use porechop to trim adapters and remove chimeric reads with default parameters
porechop,porechop_10,porechop_10_06,goal_oriented,I want to trim adapters and remove chimeric reads with default parameters
porechop,porechop_10,porechop_10_07,expert,trim adapters remove chimeric reads default parameters
porechop,porechop_10,porechop_10_08,detailed,"I have data that I need to process: trim adapters and remove chimeric reads with default parameters, utilizing multiple CPU threads for speed, saving the result to a specified output file"
porechop,porechop_10,porechop_10_09,informal,"Hey, can you help me trim adapters and remove chimeric reads with default parameters?"
porechop,porechop_10,porechop_10_10,alternative,Remove chimeric reads with default parameters after trim adapters
prodigal,prodigal_01,prodigal_01_01,original,predict genes in a bacterial genome and output protein and GFF files
prodigal,prodigal_01,prodigal_01_02,beginner,How do I predict genes in a bacterial genome and output protein and GFF files?
prodigal,prodigal_01,prodigal_01_03,student,I need to predict genes in a bacterial genome and output protein and GFF files
prodigal,prodigal_01,prodigal_01_04,polite,Please predict genes in a bacterial genome and output protein and GFF files
prodigal,prodigal_01,prodigal_01_05,sysadmin,Use prodigal to predict genes in a bacterial genome and output protein and GFF files
prodigal,prodigal_01,prodigal_01_06,goal_oriented,I want to predict genes in a bacterial genome and output protein and GFF files
prodigal,prodigal_01,prodigal_01_07,expert,predict genes bacterial genome output protein GFF files
prodigal,prodigal_01,prodigal_01_08,detailed,"I have data that I need to process: predict genes in a bacterial genome and output protein and GFF files, saving the result to a specified output file"
prodigal,prodigal_01,prodigal_01_09,informal,"Hey, can you help me predict genes in a bacterial genome and output protein and GFF files?"
prodigal,prodigal_01,prodigal_01_10,alternative,Output protein and GFF files after predict genes in a bacterial genome
prodigal,prodigal_02,prodigal_02_01,original,predict genes in metagenomic contigs
prodigal,prodigal_02,prodigal_02_02,beginner,How do I predict genes in metagenomic contigs?
prodigal,prodigal_02,prodigal_02_03,student,I need to predict genes in metagenomic contigs
prodigal,prodigal_02,prodigal_02_04,polite,Please predict genes in metagenomic contigs
prodigal,prodigal_02,prodigal_02_05,sysadmin,Use prodigal to predict genes in metagenomic contigs
prodigal,prodigal_02,prodigal_02_06,goal_oriented,I want to predict genes in metagenomic contigs
prodigal,prodigal_02,prodigal_02_07,expert,predict genes metagenomic contigs
prodigal,prodigal_02,prodigal_02_08,detailed,"I have data that I need to process: predict genes in metagenomic contigs, utilizing multiple CPU threads for speed, saving the result to a specified output file"
prodigal,prodigal_02,prodigal_02_09,informal,"Hey, can you help me predict genes in metagenomic contigs?"
prodigal,prodigal_02,prodigal_02_10,alternative,Perform: predict genes in metagenomic contigs
prodigal,prodigal_03,prodigal_03_01,original,predict genes with non-standard genetic code (Mycoplasma)
prodigal,prodigal_03,prodigal_03_02,beginner,How do I predict genes with non-standard genetic code (Mycoplasma)?
prodigal,prodigal_03,prodigal_03_03,student,I need to predict genes with non-standard genetic code (Mycoplasma)
prodigal,prodigal_03,prodigal_03_04,polite,Please predict genes with non-standard genetic code (Mycoplasma)
prodigal,prodigal_03,prodigal_03_05,sysadmin,Use prodigal to predict genes with non-standard genetic code (Mycoplasma)
prodigal,prodigal_03,prodigal_03_06,goal_oriented,I want to predict genes with non-standard genetic code (Mycoplasma)
prodigal,prodigal_03,prodigal_03_07,expert,predict genes non-standard genetic code (Mycoplasma)
prodigal,prodigal_03,prodigal_03_08,detailed,"I have data that I need to process: predict genes with non-standard genetic code (Mycoplasma), saving the result to a specified output file"
prodigal,prodigal_03,prodigal_03_09,informal,"Hey, can you help me predict genes with non-standard genetic code (Mycoplasma)?"
prodigal,prodigal_03,prodigal_03_10,alternative,"With non-standard genetic code (Mycoplasma), predict genes"
prodigal,prodigal_04,prodigal_04_01,original,predict genes and output in GenBank format for import into annotation tools
prodigal,prodigal_04,prodigal_04_02,beginner,How do I predict genes and output in GenBank format for import into annotation tools?
prodigal,prodigal_04,prodigal_04_03,student,I need to predict genes and output in GenBank format for import into annotation tools
prodigal,prodigal_04,prodigal_04_04,polite,Please predict genes and output in GenBank format for import into annotation tools
prodigal,prodigal_04,prodigal_04_05,sysadmin,Use prodigal to predict genes and output in GenBank format for import into annotation tools
prodigal,prodigal_04,prodigal_04_06,goal_oriented,I want to predict genes and output in GenBank format for import into annotation tools
prodigal,prodigal_04,prodigal_04_07,expert,predict genes output GenBank format import annotation tools
prodigal,prodigal_04,prodigal_04_08,detailed,"I have data that I need to process: predict genes and output in GenBank format for import into annotation tools, saving the result to a specified output file"
prodigal,prodigal_04,prodigal_04_09,informal,"Hey, can you help me predict genes and output in GenBank format for import into annotation tools?"
prodigal,prodigal_04,prodigal_04_10,alternative,Output in GenBank format for import into annotation tools after predict genes
prodigal,prodigal_05,prodigal_05_01,original,predict genes in a bacterial genome and output protein and GFF files with default parameters
prodigal,prodigal_05,prodigal_05_02,beginner,How do I predict genes in a bacterial genome and output protein and GFF files with default parameters?
prodigal,prodigal_05,prodigal_05_03,student,I need to predict genes in a bacterial genome and output protein and GFF files with default parameters
prodigal,prodigal_05,prodigal_05_04,polite,Please predict genes in a bacterial genome and output protein and GFF files with default parameters
prodigal,prodigal_05,prodigal_05_05,sysadmin,Use prodigal to predict genes in a bacterial genome and output protein and GFF files with default parameters
prodigal,prodigal_05,prodigal_05_06,goal_oriented,I want to predict genes in a bacterial genome and output protein and GFF files with default parameters
prodigal,prodigal_05,prodigal_05_07,expert,predict genes bacterial genome output protein GFF files default parameters
prodigal,prodigal_05,prodigal_05_08,detailed,"I have data that I need to process: predict genes in a bacterial genome and output protein and GFF files with default parameters, saving the result to a specified output file"
prodigal,prodigal_05,prodigal_05_09,informal,"Hey, can you help me predict genes in a bacterial genome and output protein and GFF files with default parameters?"
prodigal,prodigal_05,prodigal_05_10,alternative,Output protein and GFF files with default parameters after predict genes in a bacterial genome
prodigal,prodigal_06,prodigal_06_01,original,predict genes in metagenomic contigs with verbose output
prodigal,prodigal_06,prodigal_06_02,beginner,How do I predict genes in metagenomic contigs with verbose output?
prodigal,prodigal_06,prodigal_06_03,student,I need to predict genes in metagenomic contigs with verbose output
prodigal,prodigal_06,prodigal_06_04,polite,Please predict genes in metagenomic contigs with verbose output
prodigal,prodigal_06,prodigal_06_05,sysadmin,Use prodigal to predict genes in metagenomic contigs with verbose output
prodigal,prodigal_06,prodigal_06_06,goal_oriented,I want to predict genes in metagenomic contigs with verbose output
prodigal,prodigal_06,prodigal_06_07,expert,predict genes metagenomic contigs verbose output
prodigal,prodigal_06,prodigal_06_08,detailed,"I have data that I need to process: predict genes in metagenomic contigs with verbose output, utilizing multiple CPU threads for speed, saving the result to a specified output file"
prodigal,prodigal_06,prodigal_06_09,informal,"Hey, can you help me predict genes in metagenomic contigs with verbose output?"
prodigal,prodigal_06,prodigal_06_10,alternative,"With verbose output, predict genes in metagenomic contigs"
prodigal,prodigal_07,prodigal_07_01,original,predict genes with non-standard genetic code (Mycoplasma) using multiple threads
prodigal,prodigal_07,prodigal_07_02,beginner,How do I predict genes with non-standard genetic code (Mycoplasma) using multiple threads?
prodigal,prodigal_07,prodigal_07_03,student,I need to predict genes with non-standard genetic code (Mycoplasma) using multiple threads
prodigal,prodigal_07,prodigal_07_04,polite,Please predict genes with non-standard genetic code (Mycoplasma) using multiple threads
prodigal,prodigal_07,prodigal_07_05,sysadmin,Use prodigal to predict genes with non-standard genetic code (Mycoplasma) using multiple threads
prodigal,prodigal_07,prodigal_07_06,goal_oriented,I want to predict genes with non-standard genetic code (Mycoplasma) using multiple threads
prodigal,prodigal_07,prodigal_07_07,expert,predict genes non-standard genetic code (Mycoplasma) multiple threads
prodigal,prodigal_07,prodigal_07_08,detailed,"I have data that I need to process: predict genes with non-standard genetic code (Mycoplasma) using multiple threads, utilizing multiple CPU threads for speed, saving the result to a specified output file"
prodigal,prodigal_07,prodigal_07_09,informal,"Hey, can you help me predict genes with non-standard genetic code (Mycoplasma) using multiple threads?"
prodigal,prodigal_07,prodigal_07_10,alternative,"With non-standard genetic code (Mycoplasma) using multiple threads, predict genes"
prodigal,prodigal_08,prodigal_08_01,original,predict genes and output in GenBank format for import into annotation tools and write output to a file
prodigal,prodigal_08,prodigal_08_02,beginner,How do I predict genes and output in GenBank format for import into annotation tools and write output to a file?
prodigal,prodigal_08,prodigal_08_03,student,I need to predict genes and output in GenBank format for import into annotation tools and write output to a file
prodigal,prodigal_08,prodigal_08_04,polite,Please predict genes and output in GenBank format for import into annotation tools and write output to a file
prodigal,prodigal_08,prodigal_08_05,sysadmin,Use prodigal to predict genes and output in GenBank format for import into annotation tools and write output to a file
prodigal,prodigal_08,prodigal_08_06,goal_oriented,I want to predict genes and output in GenBank format for import into annotation tools and write output to a file
prodigal,prodigal_08,prodigal_08_07,expert,predict genes output GenBank format import annotation tools write output file
prodigal,prodigal_08,prodigal_08_08,detailed,"I have data that I need to process: predict genes and output in GenBank format for import into annotation tools and write output to a file, saving the result to a specified output file"
prodigal,prodigal_08,prodigal_08_09,informal,"Hey, can you help me predict genes and output in GenBank format for import into annotation tools and write output to a file?"
prodigal,prodigal_08,prodigal_08_10,alternative,Output in GenBank format for import into annotation tools and write output to a file after predict genes
prodigal,prodigal_09,prodigal_09_01,original,predict genes in a bacterial genome and output protein and GFF files in quiet mode
prodigal,prodigal_09,prodigal_09_02,beginner,How do I predict genes in a bacterial genome and output protein and GFF files in quiet mode?
prodigal,prodigal_09,prodigal_09_03,student,I need to predict genes in a bacterial genome and output protein and GFF files in quiet mode
prodigal,prodigal_09,prodigal_09_04,polite,Please predict genes in a bacterial genome and output protein and GFF files in quiet mode
prodigal,prodigal_09,prodigal_09_05,sysadmin,Use prodigal to predict genes in a bacterial genome and output protein and GFF files in quiet mode
prodigal,prodigal_09,prodigal_09_06,goal_oriented,I want to predict genes in a bacterial genome and output protein and GFF files in quiet mode
prodigal,prodigal_09,prodigal_09_07,expert,predict genes bacterial genome output protein GFF files quiet mode
prodigal,prodigal_09,prodigal_09_08,detailed,"I have data that I need to process: predict genes in a bacterial genome and output protein and GFF files in quiet mode, saving the result to a specified output file"
prodigal,prodigal_09,prodigal_09_09,informal,"Hey, can you help me predict genes in a bacterial genome and output protein and GFF files in quiet mode?"
prodigal,prodigal_09,prodigal_09_10,alternative,Output protein and GFF files in quiet mode after predict genes in a bacterial genome
prodigal,prodigal_10,prodigal_10_01,original,predict genes in metagenomic contigs with default parameters
prodigal,prodigal_10,prodigal_10_02,beginner,How do I predict genes in metagenomic contigs with default parameters?
prodigal,prodigal_10,prodigal_10_03,student,I need to predict genes in metagenomic contigs with default parameters
prodigal,prodigal_10,prodigal_10_04,polite,Please predict genes in metagenomic contigs with default parameters
prodigal,prodigal_10,prodigal_10_05,sysadmin,Use prodigal to predict genes in metagenomic contigs with default parameters
prodigal,prodigal_10,prodigal_10_06,goal_oriented,I want to predict genes in metagenomic contigs with default parameters
prodigal,prodigal_10,prodigal_10_07,expert,predict genes metagenomic contigs default parameters
prodigal,prodigal_10,prodigal_10_08,detailed,"I have data that I need to process: predict genes in metagenomic contigs with default parameters, utilizing multiple CPU threads for speed, saving the result to a specified output file"
prodigal,prodigal_10,prodigal_10_09,informal,"Hey, can you help me predict genes in metagenomic contigs with default parameters?"
prodigal,prodigal_10,prodigal_10_10,alternative,"With default parameters, predict genes in metagenomic contigs"
prokka,prokka_01,prokka_01_01,original,annotate a bacterial genome assembly
prokka,prokka_01,prokka_01_02,beginner,How do I annotate a bacterial genome assembly?
prokka,prokka_01,prokka_01_03,student,I need to annotate a bacterial genome assembly
prokka,prokka_01,prokka_01_04,polite,Please annotate a bacterial genome assembly
prokka,prokka_01,prokka_01_05,sysadmin,Use prokka to annotate a bacterial genome assembly
prokka,prokka_01,prokka_01_06,goal_oriented,I want to annotate a bacterial genome assembly
prokka,prokka_01,prokka_01_07,expert,annotate bacterial genome assembly
prokka,prokka_01,prokka_01_08,detailed,I have data that I need to process: annotate a bacterial genome assembly
prokka,prokka_01,prokka_01_09,informal,"Hey, can you help me annotate a bacterial genome assembly?"
prokka,prokka_01,prokka_01_10,alternative,Perform: annotate a bacterial genome assembly
prokka,prokka_02,prokka_02_01,original,annotate a metagenome-assembled genome (MAG)
prokka,prokka_02,prokka_02_02,beginner,How do I annotate a metagenome-assembled genome (MAG)?
prokka,prokka_02,prokka_02_03,student,I need to annotate a metagenome-assembled genome (MAG)
prokka,prokka_02,prokka_02_04,polite,Please annotate a metagenome-assembled genome (MAG)
prokka,prokka_02,prokka_02_05,sysadmin,Use prokka to annotate a metagenome-assembled genome (MAG)
prokka,prokka_02,prokka_02_06,goal_oriented,I want to annotate a metagenome-assembled genome (MAG)
prokka,prokka_02,prokka_02_07,expert,annotate metagenome-assembled genome (MAG)
prokka,prokka_02,prokka_02_08,detailed,I have data that I need to process: annotate a metagenome-assembled genome (MAG)
prokka,prokka_02,prokka_02_09,informal,"Hey, can you help me annotate a metagenome-assembled genome (MAG)?"
prokka,prokka_02,prokka_02_10,alternative,Perform: annotate a metagenome-assembled genome (MAG)
prokka,prokka_03,prokka_03_01,original,annotate archaea genome
prokka,prokka_03,prokka_03_02,beginner,How do I annotate archaea genome?
prokka,prokka_03,prokka_03_03,student,I need to annotate archaea genome
prokka,prokka_03,prokka_03_04,polite,Please annotate archaea genome
prokka,prokka_03,prokka_03_05,sysadmin,Use prokka to annotate archaea genome
prokka,prokka_03,prokka_03_06,goal_oriented,I want to annotate archaea genome
prokka,prokka_03,prokka_03_07,expert,annotate archaea genome
prokka,prokka_03,prokka_03_08,detailed,I have data that I need to process: annotate archaea genome
prokka,prokka_03,prokka_03_09,informal,"Hey, can you help me annotate archaea genome?"
prokka,prokka_03,prokka_03_10,alternative,Perform: annotate archaea genome
prokka,prokka_04,prokka_04_01,original,annotate genome with custom protein database for improved annotation
prokka,prokka_04,prokka_04_02,beginner,How do I annotate genome with custom protein database for improved annotation?
prokka,prokka_04,prokka_04_03,student,I need to annotate genome with custom protein database for improved annotation
prokka,prokka_04,prokka_04_04,polite,Please annotate genome with custom protein database for improved annotation
prokka,prokka_04,prokka_04_05,sysadmin,Use prokka to annotate genome with custom protein database for improved annotation
prokka,prokka_04,prokka_04_06,goal_oriented,I want to annotate genome with custom protein database for improved annotation
prokka,prokka_04,prokka_04_07,expert,annotate genome custom protein database improved annotation
prokka,prokka_04,prokka_04_08,detailed,I have data that I need to process: annotate genome with custom protein database for improved annotation
prokka,prokka_04,prokka_04_09,informal,"Hey, can you help me annotate genome with custom protein database for improved annotation?"
prokka,prokka_04,prokka_04_10,alternative,"With custom protein database for improved annotation, annotate genome"
prokka,prokka_05,prokka_05_01,original,annotate genome and add specific locus tag prefix
prokka,prokka_05,prokka_05_02,beginner,How do I annotate genome and add specific locus tag prefix?
prokka,prokka_05,prokka_05_03,student,I need to annotate genome and add specific locus tag prefix
prokka,prokka_05,prokka_05_04,polite,Please annotate genome and add specific locus tag prefix
prokka,prokka_05,prokka_05_05,sysadmin,Use prokka to annotate genome and add specific locus tag prefix
prokka,prokka_05,prokka_05_06,goal_oriented,I want to annotate genome and add specific locus tag prefix
prokka,prokka_05,prokka_05_07,expert,annotate genome add specific locus tag prefix
prokka,prokka_05,prokka_05_08,detailed,I have data that I need to process: annotate genome and add specific locus tag prefix
prokka,prokka_05,prokka_05_09,informal,"Hey, can you help me annotate genome and add specific locus tag prefix?"
prokka,prokka_05,prokka_05_10,alternative,Add specific locus tag prefix after annotate genome
prokka,prokka_06,prokka_06_01,original,annotate a bacterial genome assembly with verbose output
prokka,prokka_06,prokka_06_02,beginner,How do I annotate a bacterial genome assembly with verbose output?
prokka,prokka_06,prokka_06_03,student,I need to annotate a bacterial genome assembly with verbose output
prokka,prokka_06,prokka_06_04,polite,Please annotate a bacterial genome assembly with verbose output
prokka,prokka_06,prokka_06_05,sysadmin,Use prokka to annotate a bacterial genome assembly with verbose output
prokka,prokka_06,prokka_06_06,goal_oriented,I want to annotate a bacterial genome assembly with verbose output
prokka,prokka_06,prokka_06_07,expert,annotate bacterial genome assembly verbose output
prokka,prokka_06,prokka_06_08,detailed,I have data that I need to process: annotate a bacterial genome assembly with verbose output
prokka,prokka_06,prokka_06_09,informal,"Hey, can you help me annotate a bacterial genome assembly with verbose output?"
prokka,prokka_06,prokka_06_10,alternative,"With verbose output, annotate a bacterial genome assembly"
prokka,prokka_07,prokka_07_01,original,annotate a metagenome-assembled genome (MAG) using multiple threads
prokka,prokka_07,prokka_07_02,beginner,How do I annotate a metagenome-assembled genome (MAG) using multiple threads?
prokka,prokka_07,prokka_07_03,student,I need to annotate a metagenome-assembled genome (MAG) using multiple threads
prokka,prokka_07,prokka_07_04,polite,Please annotate a metagenome-assembled genome (MAG) using multiple threads
prokka,prokka_07,prokka_07_05,sysadmin,Use prokka to annotate a metagenome-assembled genome (MAG) using multiple threads
prokka,prokka_07,prokka_07_06,goal_oriented,I want to annotate a metagenome-assembled genome (MAG) using multiple threads
prokka,prokka_07,prokka_07_07,expert,annotate metagenome-assembled genome (MAG) multiple threads
prokka,prokka_07,prokka_07_08,detailed,"I have data that I need to process: annotate a metagenome-assembled genome (MAG) using multiple threads, utilizing multiple CPU threads for speed"
prokka,prokka_07,prokka_07_09,informal,"Hey, can you help me annotate a metagenome-assembled genome (MAG) using multiple threads?"
prokka,prokka_07,prokka_07_10,alternative,Perform: annotate a metagenome-assembled genome (MAG) using multiple threads
prokka,prokka_08,prokka_08_01,original,annotate archaea genome and write output to a file
prokka,prokka_08,prokka_08_02,beginner,How do I annotate archaea genome and write output to a file?
prokka,prokka_08,prokka_08_03,student,I need to annotate archaea genome and write output to a file
prokka,prokka_08,prokka_08_04,polite,Please annotate archaea genome and write output to a file
prokka,prokka_08,prokka_08_05,sysadmin,Use prokka to annotate archaea genome and write output to a file
prokka,prokka_08,prokka_08_06,goal_oriented,I want to annotate archaea genome and write output to a file
prokka,prokka_08,prokka_08_07,expert,annotate archaea genome write output file
prokka,prokka_08,prokka_08_08,detailed,"I have data that I need to process: annotate archaea genome and write output to a file, saving the result to a specified output file"
prokka,prokka_08,prokka_08_09,informal,"Hey, can you help me annotate archaea genome and write output to a file?"
prokka,prokka_08,prokka_08_10,alternative,Write output to a file after annotate archaea genome
prokka,prokka_09,prokka_09_01,original,annotate genome with custom protein database for improved annotation in quiet mode
prokka,prokka_09,prokka_09_02,beginner,How do I annotate genome with custom protein database for improved annotation in quiet mode?
prokka,prokka_09,prokka_09_03,student,I need to annotate genome with custom protein database for improved annotation in quiet mode
prokka,prokka_09,prokka_09_04,polite,Please annotate genome with custom protein database for improved annotation in quiet mode
prokka,prokka_09,prokka_09_05,sysadmin,Use prokka to annotate genome with custom protein database for improved annotation in quiet mode
prokka,prokka_09,prokka_09_06,goal_oriented,I want to annotate genome with custom protein database for improved annotation in quiet mode
prokka,prokka_09,prokka_09_07,expert,annotate genome custom protein database improved annotation quiet mode
prokka,prokka_09,prokka_09_08,detailed,I have data that I need to process: annotate genome with custom protein database for improved annotation in quiet mode
prokka,prokka_09,prokka_09_09,informal,"Hey, can you help me annotate genome with custom protein database for improved annotation in quiet mode?"
prokka,prokka_09,prokka_09_10,alternative,"With custom protein database for improved annotation in quiet mode, annotate genome"
prokka,prokka_10,prokka_10_01,original,annotate genome and add specific locus tag prefix with default parameters
prokka,prokka_10,prokka_10_02,beginner,How do I annotate genome and add specific locus tag prefix with default parameters?
prokka,prokka_10,prokka_10_03,student,I need to annotate genome and add specific locus tag prefix with default parameters
prokka,prokka_10,prokka_10_04,polite,Please annotate genome and add specific locus tag prefix with default parameters
prokka,prokka_10,prokka_10_05,sysadmin,Use prokka to annotate genome and add specific locus tag prefix with default parameters
prokka,prokka_10,prokka_10_06,goal_oriented,I want to annotate genome and add specific locus tag prefix with default parameters
prokka,prokka_10,prokka_10_07,expert,annotate genome add specific locus tag prefix default parameters
prokka,prokka_10,prokka_10_08,detailed,I have data that I need to process: annotate genome and add specific locus tag prefix with default parameters
prokka,prokka_10,prokka_10_09,informal,"Hey, can you help me annotate genome and add specific locus tag prefix with default parameters?"
prokka,prokka_10,prokka_10_10,alternative,Add specific locus tag prefix with default parameters after annotate genome
python,python_01,python_01_01,original,run a Python script
python,python_01,python_01_02,beginner,How do I run a Python script?
python,python_01,python_01_03,student,I need to run a Python script
python,python_01,python_01_04,polite,Please run a Python script
python,python_01,python_01_05,sysadmin,Use python to run a Python script
python,python_01,python_01_06,goal_oriented,I want to run a Python script
python,python_01,python_01_07,expert,run Python script
python,python_01,python_01_08,detailed,I have data that I need to process: run a Python script
python,python_01,python_01_09,informal,"Hey, can you help me run a Python script?"
python,python_01,python_01_10,alternative,Perform: run a Python script
python,python_02,python_02_01,original,run a Python one-liner
python,python_02,python_02_02,beginner,How do I run a Python one-liner?
python,python_02,python_02_03,student,I need to run a Python one-liner
python,python_02,python_02_04,polite,Please run a Python one-liner
python,python_02,python_02_05,sysadmin,Use python to run a Python one-liner
python,python_02,python_02_06,goal_oriented,I want to run a Python one-liner
python,python_02,python_02_07,expert,run Python one-liner
python,python_02,python_02_08,detailed,I have data that I need to process: run a Python one-liner
python,python_02,python_02_09,informal,"Hey, can you help me run a Python one-liner?"
python,python_02,python_02_10,alternative,Perform: run a Python one-liner
python,python_03,python_03_01,original,"run a module as a script (e.g., start an HTTP server)"
python,python_03,python_03_02,beginner,"How do I run a module as a script (e.g., start an HTTP server)?"
python,python_03,python_03_03,student,"I need to run a module as a script (e.g., start an HTTP server)"
python,python_03,python_03_04,polite,"Please run a module as a script (e.g., start an HTTP server)"
python,python_03,python_03_05,sysadmin,"Use python to run a module as a script (e.g., start an HTTP server)"
python,python_03,python_03_06,goal_oriented,"I want to run a module as a script (e.g., start an HTTP server)"
python,python_03,python_03_07,expert,"run module as script (e.g., start HTTP server)"
python,python_03,python_03_08,detailed,"I have data that I need to process: run a module as a script (e.g., start an HTTP server)"
python,python_03,python_03_09,informal,"Hey, can you help me run a module as a script (e.g., start an HTTP server)?"
python,python_03,python_03_10,alternative,"Perform: run a module as a script (e.g., start an HTTP server)"
python,python_04,python_04_01,original,create a virtual environment
python,python_04,python_04_02,beginner,How do I create a virtual environment?
python,python_04,python_04_03,student,I need to create a virtual environment
python,python_04,python_04_04,polite,Please create a virtual environment
python,python_04,python_04_05,sysadmin,Use python to create a virtual environment
python,python_04,python_04_06,goal_oriented,I want to create a virtual environment
python,python_04,python_04_07,expert,create virtual environment
python,python_04,python_04_08,detailed,I have data that I need to process: create a virtual environment
python,python_04,python_04_09,informal,"Hey, can you help me create a virtual environment?"
python,python_04,python_04_10,alternative,Perform: create a virtual environment
python,python_05,python_05_01,original,run a script with an additional module search path
python,python_05,python_05_02,beginner,How do I run a script with an additional module search path?
python,python_05,python_05_03,student,I need to run a script with an additional module search path
python,python_05,python_05_04,polite,Please run a script with an additional module search path
python,python_05,python_05_05,sysadmin,Use python to run a script with an additional module search path
python,python_05,python_05_06,goal_oriented,I want to run a script with an additional module search path
python,python_05,python_05_07,expert,run script additional module search path
python,python_05,python_05_08,detailed,I have data that I need to process: run a script with an additional module search path
python,python_05,python_05_09,informal,"Hey, can you help me run a script with an additional module search path?"
python,python_05,python_05_10,alternative,"With an additional module search path, run a script"
python,python_06,python_06_01,original,process JSON from stdin with a one-liner
python,python_06,python_06_02,beginner,How do I process JSON from stdin with a one-liner?
python,python_06,python_06_03,student,I need to process JSON from stdin with a one-liner
python,python_06,python_06_04,polite,Please process JSON from stdin with a one-liner
python,python_06,python_06_05,sysadmin,Use python to process JSON from stdin with a one-liner
python,python_06,python_06_06,goal_oriented,I want to process JSON from stdin with a one-liner
python,python_06,python_06_07,expert,process JSON stdin one-liner
python,python_06,python_06_08,detailed,I have data that I need to process: process JSON from stdin with a one-liner
python,python_06,python_06_09,informal,"Hey, can you help me process JSON from stdin with a one-liner?"
python,python_06,python_06_10,alternative,"With a one-liner, process JSON from stdin"
python,python_07,python_07_01,original,run a script with unbuffered output (for pipelines)
python,python_07,python_07_02,beginner,How do I run a script with unbuffered output (for pipelines)?
python,python_07,python_07_03,student,I need to run a script with unbuffered output (for pipelines)
python,python_07,python_07_04,polite,Please run a script with unbuffered output (for pipelines)
python,python_07,python_07_05,sysadmin,Use python to run a script with unbuffered output (for pipelines)
python,python_07,python_07_06,goal_oriented,I want to run a script with unbuffered output (for pipelines)
python,python_07,python_07_07,expert,run script unbuffered output (for pipelines)
python,python_07,python_07_08,detailed,I have data that I need to process: run a script with unbuffered output (for pipelines)
python,python_07,python_07_09,informal,"Hey, can you help me run a script with unbuffered output (for pipelines)?"
python,python_07,python_07_10,alternative,"With unbuffered output (for pipelines), run a script"
python,python_08,python_08_01,original,profile a script and show cumulative time
python,python_08,python_08_02,beginner,How do I profile a script and show cumulative time?
python,python_08,python_08_03,student,I need to profile a script and show cumulative time
python,python_08,python_08_04,polite,Please profile a script and show cumulative time
python,python_08,python_08_05,sysadmin,Use python to profile a script and show cumulative time
python,python_08,python_08_06,goal_oriented,I want to profile a script and show cumulative time
python,python_08,python_08_07,expert,profile script show cumulative time
python,python_08,python_08_08,detailed,I have data that I need to process: profile a script and show cumulative time
python,python_08,python_08_09,informal,"Hey, can you help me profile a script and show cumulative time?"
python,python_08,python_08_10,alternative,Show cumulative time after profile a script
python,python_09,python_09_01,original,check Python version
python,python_09,python_09_02,beginner,How do I check Python version?
python,python_09,python_09_03,student,I need to check Python version
python,python_09,python_09_04,polite,Please check Python version
python,python_09,python_09_05,sysadmin,Use python to check Python version
python,python_09,python_09_06,goal_oriented,I want to check Python version
python,python_09,python_09_07,expert,check Python version
python,python_09,python_09_08,detailed,I have data that I need to process: check Python version
python,python_09,python_09_09,informal,"Hey, can you help me check Python version?"
python,python_09,python_09_10,alternative,Perform: check Python version
python,python_10,python_10_01,original,run a script with a warning filter to show all deprecation warnings
python,python_10,python_10_02,beginner,How do I run a script with a warning filter to show all deprecation warnings?
python,python_10,python_10_03,student,I need to run a script with a warning filter to show all deprecation warnings
python,python_10,python_10_04,polite,Please run a script with a warning filter to show all deprecation warnings
python,python_10,python_10_05,sysadmin,Use python to run a script with a warning filter to show all deprecation warnings
python,python_10,python_10_06,goal_oriented,I want to run a script with a warning filter to show all deprecation warnings
python,python_10,python_10_07,expert,run script warning filter show all deprecation warnings
python,python_10,python_10_08,detailed,I have data that I need to process: run a script with a warning filter to show all deprecation warnings
python,python_10,python_10_09,informal,"Hey, can you help me run a script with a warning filter to show all deprecation warnings?"
python,python_10,python_10_10,alternative,"With a warning filter to show all deprecation warnings, run a script"
qualimap,qualimap_01,qualimap_01_01,original,"run BAM QC on a sorted, indexed BAM"
qualimap,qualimap_01,qualimap_01_02,beginner,"How do I run BAM QC on a sorted, indexed BAM?"
qualimap,qualimap_01,qualimap_01_03,student,"I need to run BAM QC on a sorted, indexed BAM"
qualimap,qualimap_01,qualimap_01_04,polite,"Please run BAM QC on a sorted, indexed BAM"
qualimap,qualimap_01,qualimap_01_05,sysadmin,"Use qualimap to run BAM QC on a sorted, indexed BAM"
qualimap,qualimap_01,qualimap_01_06,goal_oriented,"I want to run BAM QC on a sorted, indexed BAM"
qualimap,qualimap_01,qualimap_01_07,expert,"run BAM QC on sorted, indexed BAM"
qualimap,qualimap_01,qualimap_01_08,detailed,"I have data that I need to process: run BAM QC on a sorted, indexed BAM"
qualimap,qualimap_01,qualimap_01_09,informal,"Hey, can you help me run BAM QC on a sorted, indexed BAM?"
qualimap,qualimap_01,qualimap_01_10,alternative,"Perform: run BAM QC on a sorted, indexed BAM"
qualimap,qualimap_02,qualimap_02_01,original,run RNA-seq QC with strand information
qualimap,qualimap_02,qualimap_02_02,beginner,How do I run RNA-seq QC with strand information?
qualimap,qualimap_02,qualimap_02_03,student,I need to run RNA-seq QC with strand information
qualimap,qualimap_02,qualimap_02_04,polite,Please run RNA-seq QC with strand information
qualimap,qualimap_02,qualimap_02_05,sysadmin,Use qualimap to run RNA-seq QC with strand information
qualimap,qualimap_02,qualimap_02_06,goal_oriented,I want to run RNA-seq QC with strand information
qualimap,qualimap_02,qualimap_02_07,expert,run RNA-seq QC strand information
qualimap,qualimap_02,qualimap_02_08,detailed,"I have data that I need to process: run RNA-seq QC with strand information, utilizing multiple CPU threads for speed"
qualimap,qualimap_02,qualimap_02_09,informal,"Hey, can you help me run RNA-seq QC with strand information?"
qualimap,qualimap_02,qualimap_02_10,alternative,"With strand information, run RNA-seq QC"
qualimap,qualimap_03,qualimap_03_01,original,run multi-sample QC and aggregate report
qualimap,qualimap_03,qualimap_03_02,beginner,How do I run multi-sample QC and aggregate report?
qualimap,qualimap_03,qualimap_03_03,student,I need to run multi-sample QC and aggregate report
qualimap,qualimap_03,qualimap_03_04,polite,Please run multi-sample QC and aggregate report
qualimap,qualimap_03,qualimap_03_05,sysadmin,Use qualimap to run multi-sample QC and aggregate report
qualimap,qualimap_03,qualimap_03_06,goal_oriented,I want to run multi-sample QC and aggregate report
qualimap,qualimap_03,qualimap_03_07,expert,run multi-sample QC aggregate report
qualimap,qualimap_03,qualimap_03_08,detailed,I have data that I need to process: run multi-sample QC and aggregate report
qualimap,qualimap_03,qualimap_03_09,informal,"Hey, can you help me run multi-sample QC and aggregate report?"
qualimap,qualimap_03,qualimap_03_10,alternative,Aggregate report after run multi-sample QC
qualimap,qualimap_04,qualimap_04_01,original,run BAM QC with GC bias correction (human)
qualimap,qualimap_04,qualimap_04_02,beginner,How do I run BAM QC with GC bias correction (human)?
qualimap,qualimap_04,qualimap_04_03,student,I need to run BAM QC with GC bias correction (human)
qualimap,qualimap_04,qualimap_04_04,polite,Please run BAM QC with GC bias correction (human)
qualimap,qualimap_04,qualimap_04_05,sysadmin,Use qualimap to run BAM QC with GC bias correction (human)
qualimap,qualimap_04,qualimap_04_06,goal_oriented,I want to run BAM QC with GC bias correction (human)
qualimap,qualimap_04,qualimap_04_07,expert,run BAM QC GC bias correction (human)
qualimap,qualimap_04,qualimap_04_08,detailed,I have data that I need to process: run BAM QC with GC bias correction (human)
qualimap,qualimap_04,qualimap_04_09,informal,"Hey, can you help me run BAM QC with GC bias correction (human)?"
qualimap,qualimap_04,qualimap_04_10,alternative,"With GC bias correction (human), run BAM QC"
qualimap,qualimap_05,qualimap_05_01,original,generate PDF and HTML reports
qualimap,qualimap_05,qualimap_05_02,beginner,How do I generate PDF and HTML reports?
qualimap,qualimap_05,qualimap_05_03,student,I need to generate PDF and HTML reports
qualimap,qualimap_05,qualimap_05_04,polite,Please generate PDF and HTML reports
qualimap,qualimap_05,qualimap_05_05,sysadmin,Use qualimap to generate PDF and HTML reports
qualimap,qualimap_05,qualimap_05_06,goal_oriented,I want to generate PDF and HTML reports
qualimap,qualimap_05,qualimap_05_07,expert,generate PDF HTML reports
qualimap,qualimap_05,qualimap_05_08,detailed,I have data that I need to process: generate PDF and HTML reports
qualimap,qualimap_05,qualimap_05_09,informal,"Hey, can you help me generate PDF and HTML reports?"
qualimap,qualimap_05,qualimap_05_10,alternative,HTML reports after generate PDF
qualimap,qualimap_06,qualimap_06_01,original,run BAM QC on whole-genome sequencing data
qualimap,qualimap_06,qualimap_06_02,beginner,How do I run BAM QC on whole-genome sequencing data?
qualimap,qualimap_06,qualimap_06_03,student,I need to run BAM QC on whole-genome sequencing data
qualimap,qualimap_06,qualimap_06_04,polite,Please run BAM QC on whole-genome sequencing data
qualimap,qualimap_06,qualimap_06_05,sysadmin,Use qualimap to run BAM QC on whole-genome sequencing data
qualimap,qualimap_06,qualimap_06_06,goal_oriented,I want to run BAM QC on whole-genome sequencing data
qualimap,qualimap_06,qualimap_06_07,expert,run BAM QC on whole-genome sequencing data
qualimap,qualimap_06,qualimap_06_08,detailed,I have data that I need to process: run BAM QC on whole-genome sequencing data
qualimap,qualimap_06,qualimap_06_09,informal,"Hey, can you help me run BAM QC on whole-genome sequencing data?"
qualimap,qualimap_06,qualimap_06_10,alternative,Perform: run BAM QC on whole-genome sequencing data
qualimap,qualimap_07,qualimap_07_01,original,count QC for differential expression count matrices
qualimap,qualimap_07,qualimap_07_02,beginner,How do I count QC for differential expression count matrices?
qualimap,qualimap_07,qualimap_07_03,student,I need to count QC for differential expression count matrices
qualimap,qualimap_07,qualimap_07_04,polite,Please count QC for differential expression count matrices
qualimap,qualimap_07,qualimap_07_05,sysadmin,Use qualimap to count QC for differential expression count matrices
qualimap,qualimap_07,qualimap_07_06,goal_oriented,I want to count QC for differential expression count matrices
qualimap,qualimap_07,qualimap_07_07,expert,count QC differential expression count matrices
qualimap,qualimap_07,qualimap_07_08,detailed,I have data that I need to process: count QC for differential expression count matrices
qualimap,qualimap_07,qualimap_07_09,informal,"Hey, can you help me count QC for differential expression count matrices?"
qualimap,qualimap_07,qualimap_07_10,alternative,Perform: count QC for differential expression count matrices
qualimap,qualimap_08,qualimap_08_01,original,"run BAM QC on a sorted, indexed BAM and write output to a file"
qualimap,qualimap_08,qualimap_08_02,beginner,"How do I run BAM QC on a sorted, indexed BAM and write output to a file?"
qualimap,qualimap_08,qualimap_08_03,student,"I need to run BAM QC on a sorted, indexed BAM and write output to a file"
qualimap,qualimap_08,qualimap_08_04,polite,"Please run BAM QC on a sorted, indexed BAM and write output to a file"
qualimap,qualimap_08,qualimap_08_05,sysadmin,"Use qualimap to run BAM QC on a sorted, indexed BAM and write output to a file"
qualimap,qualimap_08,qualimap_08_06,goal_oriented,"I want to run BAM QC on a sorted, indexed BAM and write output to a file"
qualimap,qualimap_08,qualimap_08_07,expert,"run BAM QC on sorted, indexed BAM write output file"
qualimap,qualimap_08,qualimap_08_08,detailed,"I have data that I need to process: run BAM QC on a sorted, indexed BAM and write output to a file, saving the result to a specified output file"
qualimap,qualimap_08,qualimap_08_09,informal,"Hey, can you help me run BAM QC on a sorted, indexed BAM and write output to a file?"
qualimap,qualimap_08,qualimap_08_10,alternative,"Write output to a file after run BAM QC on a sorted, indexed BAM"
qualimap,qualimap_09,qualimap_09_01,original,run RNA-seq QC with strand information in quiet mode
qualimap,qualimap_09,qualimap_09_02,beginner,How do I run RNA-seq QC with strand information in quiet mode?
qualimap,qualimap_09,qualimap_09_03,student,I need to run RNA-seq QC with strand information in quiet mode
qualimap,qualimap_09,qualimap_09_04,polite,Please run RNA-seq QC with strand information in quiet mode
qualimap,qualimap_09,qualimap_09_05,sysadmin,Use qualimap to run RNA-seq QC with strand information in quiet mode
qualimap,qualimap_09,qualimap_09_06,goal_oriented,I want to run RNA-seq QC with strand information in quiet mode
qualimap,qualimap_09,qualimap_09_07,expert,run RNA-seq QC strand information quiet mode
qualimap,qualimap_09,qualimap_09_08,detailed,"I have data that I need to process: run RNA-seq QC with strand information in quiet mode, utilizing multiple CPU threads for speed"
qualimap,qualimap_09,qualimap_09_09,informal,"Hey, can you help me run RNA-seq QC with strand information in quiet mode?"
qualimap,qualimap_09,qualimap_09_10,alternative,"With strand information in quiet mode, run RNA-seq QC"
qualimap,qualimap_10,qualimap_10_01,original,run multi-sample QC and aggregate report with default parameters
qualimap,qualimap_10,qualimap_10_02,beginner,How do I run multi-sample QC and aggregate report with default parameters?
qualimap,qualimap_10,qualimap_10_03,student,I need to run multi-sample QC and aggregate report with default parameters
qualimap,qualimap_10,qualimap_10_04,polite,Please run multi-sample QC and aggregate report with default parameters
qualimap,qualimap_10,qualimap_10_05,sysadmin,Use qualimap to run multi-sample QC and aggregate report with default parameters
qualimap,qualimap_10,qualimap_10_06,goal_oriented,I want to run multi-sample QC and aggregate report with default parameters
qualimap,qualimap_10,qualimap_10_07,expert,run multi-sample QC aggregate report default parameters
qualimap,qualimap_10,qualimap_10_08,detailed,I have data that I need to process: run multi-sample QC and aggregate report with default parameters
qualimap,qualimap_10,qualimap_10_09,informal,"Hey, can you help me run multi-sample QC and aggregate report with default parameters?"
qualimap,qualimap_10,qualimap_10_10,alternative,Aggregate report with default parameters after run multi-sample QC
quast,quast_01,quast_01_01,original,assess assembly quality with reference genome
quast,quast_01,quast_01_02,beginner,How do I assess assembly quality with reference genome?
quast,quast_01,quast_01_03,student,I need to assess assembly quality with reference genome
quast,quast_01,quast_01_04,polite,Please assess assembly quality with reference genome
quast,quast_01,quast_01_05,sysadmin,Use quast to assess assembly quality with reference genome
quast,quast_01,quast_01_06,goal_oriented,I want to assess assembly quality with reference genome
quast,quast_01,quast_01_07,expert,assess assembly quality reference genome
quast,quast_01,quast_01_08,detailed,"I have data that I need to process: assess assembly quality with reference genome, utilizing multiple CPU threads for speed, saving the result to a specified output file"
quast,quast_01,quast_01_09,informal,"Hey, can you help me assess assembly quality with reference genome?"
quast,quast_01,quast_01_10,alternative,"With reference genome, assess assembly quality"
quast,quast_02,quast_02_01,original,compare multiple assemblies without reference genome
quast,quast_02,quast_02_02,beginner,How do I compare multiple assemblies without reference genome?
quast,quast_02,quast_02_03,student,I need to compare multiple assemblies without reference genome
quast,quast_02,quast_02_04,polite,Please compare multiple assemblies without reference genome
quast,quast_02,quast_02_05,sysadmin,Use quast to compare multiple assemblies without reference genome
quast,quast_02,quast_02_06,goal_oriented,I want to compare multiple assemblies without reference genome
quast,quast_02,quast_02_07,expert,compare multiple assemblies without reference genome
quast,quast_02,quast_02_08,detailed,"I have data that I need to process: compare multiple assemblies without reference genome, utilizing multiple CPU threads for speed, saving the result to a specified output file"
quast,quast_02,quast_02_09,informal,"Hey, can you help me compare multiple assemblies without reference genome?"
quast,quast_02,quast_02_10,alternative,Perform: compare multiple assemblies without reference genome
quast,quast_03,quast_03_01,original,assess metagenome assembly quality with metaQUAST
quast,quast_03,quast_03_02,beginner,How do I assess metagenome assembly quality with metaQUAST?
quast,quast_03,quast_03_03,student,I need to assess metagenome assembly quality with metaQUAST
quast,quast_03,quast_03_04,polite,Please assess metagenome assembly quality with metaQUAST
quast,quast_03,quast_03_05,sysadmin,Use quast to assess metagenome assembly quality with metaQUAST
quast,quast_03,quast_03_06,goal_oriented,I want to assess metagenome assembly quality with metaQUAST
quast,quast_03,quast_03_07,expert,assess metagenome assembly quality metaQUAST
quast,quast_03,quast_03_08,detailed,"I have data that I need to process: assess metagenome assembly quality with metaQUAST, utilizing multiple CPU threads for speed, saving the result to a specified output file"
quast,quast_03,quast_03_09,informal,"Hey, can you help me assess metagenome assembly quality with metaQUAST?"
quast,quast_03,quast_03_10,alternative,"With metaQUAST, assess metagenome assembly quality"
quast,quast_04,quast_04_01,original,assess assembly with minimum contig length filter
quast,quast_04,quast_04_02,beginner,How do I assess assembly with minimum contig length filter?
quast,quast_04,quast_04_03,student,I need to assess assembly with minimum contig length filter
quast,quast_04,quast_04_04,polite,Please assess assembly with minimum contig length filter
quast,quast_04,quast_04_05,sysadmin,Use quast to assess assembly with minimum contig length filter
quast,quast_04,quast_04_06,goal_oriented,I want to assess assembly with minimum contig length filter
quast,quast_04,quast_04_07,expert,assess assembly minimum contig length filter
quast,quast_04,quast_04_08,detailed,"I have data that I need to process: assess assembly with minimum contig length filter, utilizing multiple CPU threads for speed, saving the result to a specified output file"
quast,quast_04,quast_04_09,informal,"Hey, can you help me assess assembly with minimum contig length filter?"
quast,quast_04,quast_04_10,alternative,"With minimum contig length filter, assess assembly"
quast,quast_05,quast_05_01,original,assess assembly quality with reference genome with default parameters
quast,quast_05,quast_05_02,beginner,How do I assess assembly quality with reference genome with default parameters?
quast,quast_05,quast_05_03,student,I need to assess assembly quality with reference genome with default parameters
quast,quast_05,quast_05_04,polite,Please assess assembly quality with reference genome with default parameters
quast,quast_05,quast_05_05,sysadmin,Use quast to assess assembly quality with reference genome with default parameters
quast,quast_05,quast_05_06,goal_oriented,I want to assess assembly quality with reference genome with default parameters
quast,quast_05,quast_05_07,expert,assess assembly quality reference genome default parameters
quast,quast_05,quast_05_08,detailed,"I have data that I need to process: assess assembly quality with reference genome with default parameters, utilizing multiple CPU threads for speed, saving the result to a specified output file"
quast,quast_05,quast_05_09,informal,"Hey, can you help me assess assembly quality with reference genome with default parameters?"
quast,quast_05,quast_05_10,alternative,"With reference genome with default parameters, assess assembly quality"
quast,quast_06,quast_06_01,original,compare multiple assemblies without reference genome with verbose output
quast,quast_06,quast_06_02,beginner,How do I compare multiple assemblies without reference genome with verbose output?
quast,quast_06,quast_06_03,student,I need to compare multiple assemblies without reference genome with verbose output
quast,quast_06,quast_06_04,polite,Please compare multiple assemblies without reference genome with verbose output
quast,quast_06,quast_06_05,sysadmin,Use quast to compare multiple assemblies without reference genome with verbose output
quast,quast_06,quast_06_06,goal_oriented,I want to compare multiple assemblies without reference genome with verbose output
quast,quast_06,quast_06_07,expert,compare multiple assemblies without reference genome verbose output
quast,quast_06,quast_06_08,detailed,"I have data that I need to process: compare multiple assemblies without reference genome with verbose output, utilizing multiple CPU threads for speed, saving the result to a specified output file"
quast,quast_06,quast_06_09,informal,"Hey, can you help me compare multiple assemblies without reference genome with verbose output?"
quast,quast_06,quast_06_10,alternative,"With verbose output, compare multiple assemblies without reference genome"
quast,quast_07,quast_07_01,original,assess metagenome assembly quality with metaQUAST using multiple threads
quast,quast_07,quast_07_02,beginner,How do I assess metagenome assembly quality with metaQUAST using multiple threads?
quast,quast_07,quast_07_03,student,I need to assess metagenome assembly quality with metaQUAST using multiple threads
quast,quast_07,quast_07_04,polite,Please assess metagenome assembly quality with metaQUAST using multiple threads
quast,quast_07,quast_07_05,sysadmin,Use quast to assess metagenome assembly quality with metaQUAST using multiple threads
quast,quast_07,quast_07_06,goal_oriented,I want to assess metagenome assembly quality with metaQUAST using multiple threads
quast,quast_07,quast_07_07,expert,assess metagenome assembly quality metaQUAST multiple threads
quast,quast_07,quast_07_08,detailed,"I have data that I need to process: assess metagenome assembly quality with metaQUAST using multiple threads, utilizing multiple CPU threads for speed, saving the result to a specified output file"
quast,quast_07,quast_07_09,informal,"Hey, can you help me assess metagenome assembly quality with metaQUAST using multiple threads?"
quast,quast_07,quast_07_10,alternative,"With metaQUAST using multiple threads, assess metagenome assembly quality"
quast,quast_08,quast_08_01,original,assess assembly with minimum contig length filter and write output to a file
quast,quast_08,quast_08_02,beginner,How do I assess assembly with minimum contig length filter and write output to a file?
quast,quast_08,quast_08_03,student,I need to assess assembly with minimum contig length filter and write output to a file
quast,quast_08,quast_08_04,polite,Please assess assembly with minimum contig length filter and write output to a file
quast,quast_08,quast_08_05,sysadmin,Use quast to assess assembly with minimum contig length filter and write output to a file
quast,quast_08,quast_08_06,goal_oriented,I want to assess assembly with minimum contig length filter and write output to a file
quast,quast_08,quast_08_07,expert,assess assembly minimum contig length filter write output file
quast,quast_08,quast_08_08,detailed,"I have data that I need to process: assess assembly with minimum contig length filter and write output to a file, utilizing multiple CPU threads for speed, saving the result to a specified output file"
quast,quast_08,quast_08_09,informal,"Hey, can you help me assess assembly with minimum contig length filter and write output to a file?"
quast,quast_08,quast_08_10,alternative,Write output to a file after assess assembly with minimum contig length filter
quast,quast_09,quast_09_01,original,assess assembly quality with reference genome in quiet mode
quast,quast_09,quast_09_02,beginner,How do I assess assembly quality with reference genome in quiet mode?
quast,quast_09,quast_09_03,student,I need to assess assembly quality with reference genome in quiet mode
quast,quast_09,quast_09_04,polite,Please assess assembly quality with reference genome in quiet mode
quast,quast_09,quast_09_05,sysadmin,Use quast to assess assembly quality with reference genome in quiet mode
quast,quast_09,quast_09_06,goal_oriented,I want to assess assembly quality with reference genome in quiet mode
quast,quast_09,quast_09_07,expert,assess assembly quality reference genome quiet mode
quast,quast_09,quast_09_08,detailed,"I have data that I need to process: assess assembly quality with reference genome in quiet mode, utilizing multiple CPU threads for speed, saving the result to a specified output file"
quast,quast_09,quast_09_09,informal,"Hey, can you help me assess assembly quality with reference genome in quiet mode?"
quast,quast_09,quast_09_10,alternative,"With reference genome in quiet mode, assess assembly quality"
quast,quast_10,quast_10_01,original,compare multiple assemblies without reference genome with default parameters
quast,quast_10,quast_10_02,beginner,How do I compare multiple assemblies without reference genome with default parameters?
quast,quast_10,quast_10_03,student,I need to compare multiple assemblies without reference genome with default parameters
quast,quast_10,quast_10_04,polite,Please compare multiple assemblies without reference genome with default parameters
quast,quast_10,quast_10_05,sysadmin,Use quast to compare multiple assemblies without reference genome with default parameters
quast,quast_10,quast_10_06,goal_oriented,I want to compare multiple assemblies without reference genome with default parameters
quast,quast_10,quast_10_07,expert,compare multiple assemblies without reference genome default parameters
quast,quast_10,quast_10_08,detailed,"I have data that I need to process: compare multiple assemblies without reference genome with default parameters, utilizing multiple CPU threads for speed, saving the result to a specified output file"
quast,quast_10,quast_10_09,informal,"Hey, can you help me compare multiple assemblies without reference genome with default parameters?"
quast,quast_10,quast_10_10,alternative,"With default parameters, compare multiple assemblies without reference genome"
r,r_01,r_01_01,original,run an R script non-interactively
r,r_01,r_01_02,beginner,How do I run an R script non-interactively?
r,r_01,r_01_03,student,I need to run an R script non-interactively
r,r_01,r_01_04,polite,Please run an R script non-interactively
r,r_01,r_01_05,sysadmin,Use r to run an R script non-interactively
r,r_01,r_01_06,goal_oriented,I want to run an R script non-interactively
r,r_01,r_01_07,expert,run R script non-interactively
r,r_01,r_01_08,detailed,I have data that I need to process: run an R script non-interactively
r,r_01,r_01_09,informal,"Hey, can you help me run an R script non-interactively?"
r,r_01,r_01_10,alternative,Perform: run an R script non-interactively
r,r_02,r_02_01,original,run an R script with command-line arguments
r,r_02,r_02_02,beginner,How do I run an R script with command-line arguments?
r,r_02,r_02_03,student,I need to run an R script with command-line arguments
r,r_02,r_02_04,polite,Please run an R script with command-line arguments
r,r_02,r_02_05,sysadmin,Use r to run an R script with command-line arguments
r,r_02,r_02_06,goal_oriented,I want to run an R script with command-line arguments
r,r_02,r_02_07,expert,run R script command-line arguments
r,r_02,r_02_08,detailed,"I have data that I need to process: run an R script with command-line arguments, saving the result to a specified output file"
r,r_02,r_02_09,informal,"Hey, can you help me run an R script with command-line arguments?"
r,r_02,r_02_10,alternative,"With command-line arguments, run an R script"
r,r_03,r_03_01,original,execute a one-liner R expression
r,r_03,r_03_02,beginner,How do I execute a one-liner R expression?
r,r_03,r_03_03,student,I need to execute a one-liner R expression
r,r_03,r_03_04,polite,Please execute a one-liner R expression
r,r_03,r_03_05,sysadmin,Use r to execute a one-liner R expression
r,r_03,r_03_06,goal_oriented,I want to execute a one-liner R expression
r,r_03,r_03_07,expert,execute one-liner R expression
r,r_03,r_03_08,detailed,I have data that I need to process: execute a one-liner R expression
r,r_03,r_03_09,informal,"Hey, can you help me execute a one-liner R expression?"
r,r_03,r_03_10,alternative,Perform: execute a one-liner R expression
r,r_04,r_04_01,original,install a CRAN package into the user library
r,r_04,r_04_02,beginner,How do I install a CRAN package into the user library?
r,r_04,r_04_03,student,I need to install a CRAN package into the user library
r,r_04,r_04_04,polite,Please install a CRAN package into the user library
r,r_04,r_04_05,sysadmin,Use r to install a CRAN package into the user library
r,r_04,r_04_06,goal_oriented,I want to install a CRAN package into the user library
r,r_04,r_04_07,expert,install CRAN package user library
r,r_04,r_04_08,detailed,I have data that I need to process: install a CRAN package into the user library
r,r_04,r_04_09,informal,"Hey, can you help me install a CRAN package into the user library?"
r,r_04,r_04_10,alternative,Perform: install a CRAN package into the user library
r,r_05,r_05_01,original,install Bioconductor packages
r,r_05,r_05_02,beginner,How do I install Bioconductor packages?
r,r_05,r_05_03,student,I need to install Bioconductor packages
r,r_05,r_05_04,polite,Please install Bioconductor packages
r,r_05,r_05_05,sysadmin,Use r to install Bioconductor packages
r,r_05,r_05_06,goal_oriented,I want to install Bioconductor packages
r,r_05,r_05_07,expert,install Bioconductor packages
r,r_05,r_05_08,detailed,I have data that I need to process: install Bioconductor packages
r,r_05,r_05_09,informal,"Hey, can you help me install Bioconductor packages?"
r,r_05,r_05_10,alternative,Perform: install Bioconductor packages
r,r_06,r_06_01,original,check installed package version
r,r_06,r_06_02,beginner,How do I check installed package version?
r,r_06,r_06_03,student,I need to check installed package version
r,r_06,r_06_04,polite,Please check installed package version
r,r_06,r_06_05,sysadmin,Use r to check installed package version
r,r_06,r_06_06,goal_oriented,I want to check installed package version
r,r_06,r_06_07,expert,check installed package version
r,r_06,r_06_08,detailed,I have data that I need to process: check installed package version
r,r_06,r_06_09,informal,"Hey, can you help me check installed package version?"
r,r_06,r_06_10,alternative,Perform: check installed package version
r,r_07,r_07_01,original,list user-installed packages and their versions
r,r_07,r_07_02,beginner,How do I list user-installed packages and their versions?
r,r_07,r_07_03,student,I need to list user-installed packages and their versions
r,r_07,r_07_04,polite,Please list user-installed packages and their versions
r,r_07,r_07_05,sysadmin,Use r to list user-installed packages and their versions
r,r_07,r_07_06,goal_oriented,I want to list user-installed packages and their versions
r,r_07,r_07_07,expert,list user-installed packages their versions
r,r_07,r_07_08,detailed,I have data that I need to process: list user-installed packages and their versions
r,r_07,r_07_09,informal,"Hey, can you help me list user-installed packages and their versions?"
r,r_07,r_07_10,alternative,Their versions after list user-installed packages
r,r_08,r_08_01,original,run R script suppressing startup messages
r,r_08,r_08_02,beginner,How do I run R script suppressing startup messages?
r,r_08,r_08_03,student,I need to run R script suppressing startup messages
r,r_08,r_08_04,polite,Please run R script suppressing startup messages
r,r_08,r_08_05,sysadmin,Use r to run R script suppressing startup messages
r,r_08,r_08_06,goal_oriented,I want to run R script suppressing startup messages
r,r_08,r_08_07,expert,run R script suppressing startup messages
r,r_08,r_08_08,detailed,I have data that I need to process: run R script suppressing startup messages
r,r_08,r_08_09,informal,"Hey, can you help me run R script suppressing startup messages?"
r,r_08,r_08_10,alternative,Perform: run R script suppressing startup messages
r,r_09,r_09_01,original,show R library paths
r,r_09,r_09_02,beginner,How do I show R library paths?
r,r_09,r_09_03,student,I need to show R library paths
r,r_09,r_09_04,polite,Please show R library paths
r,r_09,r_09_05,sysadmin,Use r to show R library paths
r,r_09,r_09_06,goal_oriented,I want to show R library paths
r,r_09,r_09_07,expert,show R library paths
r,r_09,r_09_08,detailed,I have data that I need to process: show R library paths
r,r_09,r_09_09,informal,"Hey, can you help me show R library paths?"
r,r_09,r_09_10,alternative,Perform: show R library paths
r,r_10,r_10_01,original,render an Rmarkdown document to HTML
r,r_10,r_10_02,beginner,How do I render an Rmarkdown document to HTML?
r,r_10,r_10_03,student,I need to render an Rmarkdown document to HTML
r,r_10,r_10_04,polite,Please render an Rmarkdown document to HTML
r,r_10,r_10_05,sysadmin,Use r to render an Rmarkdown document to HTML
r,r_10,r_10_06,goal_oriented,I want to render an Rmarkdown document to HTML
r,r_10,r_10_07,expert,render Rmarkdown document HTML
r,r_10,r_10_08,detailed,I have data that I need to process: render an Rmarkdown document to HTML
r,r_10,r_10_09,informal,"Hey, can you help me render an Rmarkdown document to HTML?"
r,r_10,r_10_10,alternative,Output HTML by performing: render an Rmarkdown document
racon,racon_01,racon_01_01,original,run one round of Racon polishing on an ONT assembly
racon,racon_01,racon_01_02,beginner,How do I run one round of Racon polishing on an ONT assembly?
racon,racon_01,racon_01_03,student,I need to run one round of Racon polishing on an ONT assembly
racon,racon_01,racon_01_04,polite,Please run one round of Racon polishing on an ONT assembly
racon,racon_01,racon_01_05,sysadmin,Use racon to run one round of Racon polishing on an ONT assembly
racon,racon_01,racon_01_06,goal_oriented,I want to run one round of Racon polishing on an ONT assembly
racon,racon_01,racon_01_07,expert,run one round of Racon polishing on ONT assembly
racon,racon_01,racon_01_08,detailed,"I have data that I need to process: run one round of Racon polishing on an ONT assembly, utilizing multiple CPU threads for speed"
racon,racon_01,racon_01_09,informal,"Hey, can you help me run one round of Racon polishing on an ONT assembly?"
racon,racon_01,racon_01_10,alternative,Perform: run one round of Racon polishing on an ONT assembly
racon,racon_02,racon_02_01,original,run second round of Racon polishing
racon,racon_02,racon_02_02,beginner,How do I run second round of Racon polishing?
racon,racon_02,racon_02_03,student,I need to run second round of Racon polishing
racon,racon_02,racon_02_04,polite,Please run second round of Racon polishing
racon,racon_02,racon_02_05,sysadmin,Use racon to run second round of Racon polishing
racon,racon_02,racon_02_06,goal_oriented,I want to run second round of Racon polishing
racon,racon_02,racon_02_07,expert,run second round of Racon polishing
racon,racon_02,racon_02_08,detailed,"I have data that I need to process: run second round of Racon polishing, utilizing multiple CPU threads for speed"
racon,racon_02,racon_02_09,informal,"Hey, can you help me run second round of Racon polishing?"
racon,racon_02,racon_02_10,alternative,Perform: run second round of Racon polishing
racon,racon_03,racon_03_01,original,run Racon polishing using SAM alignment instead of PAF
racon,racon_03,racon_03_02,beginner,How do I run Racon polishing using SAM alignment instead of PAF?
racon,racon_03,racon_03_03,student,I need to run Racon polishing using SAM alignment instead of PAF
racon,racon_03,racon_03_04,polite,Please run Racon polishing using SAM alignment instead of PAF
racon,racon_03,racon_03_05,sysadmin,Use racon to run Racon polishing using SAM alignment instead of PAF
racon,racon_03,racon_03_06,goal_oriented,I want to run Racon polishing using SAM alignment instead of PAF
racon,racon_03,racon_03_07,expert,run Racon polishing SAM alignment instead of PAF
racon,racon_03,racon_03_08,detailed,"I have data that I need to process: run Racon polishing using SAM alignment instead of PAF, utilizing multiple CPU threads for speed"
racon,racon_03,racon_03_09,informal,"Hey, can you help me run Racon polishing using SAM alignment instead of PAF?"
racon,racon_03,racon_03_10,alternative,Perform: run Racon polishing using SAM alignment instead of PAF
racon,racon_04,racon_04_01,original,run one round of Racon polishing on an ONT assembly
racon,racon_04,racon_04_02,beginner,How do I run one round of Racon polishing on an ONT assembly?
racon,racon_04,racon_04_03,student,I need to run one round of Racon polishing on an ONT assembly
racon,racon_04,racon_04_04,polite,Please run one round of Racon polishing on an ONT assembly
racon,racon_04,racon_04_05,sysadmin,Use racon to run one round of Racon polishing on an ONT assembly
racon,racon_04,racon_04_06,goal_oriented,I want to run one round of Racon polishing on an ONT assembly
racon,racon_04,racon_04_07,expert,run one round of Racon polishing on ONT assembly
racon,racon_04,racon_04_08,detailed,"I have data that I need to process: run one round of Racon polishing on an ONT assembly, utilizing multiple CPU threads for speed"
racon,racon_04,racon_04_09,informal,"Hey, can you help me run one round of Racon polishing on an ONT assembly?"
racon,racon_04,racon_04_10,alternative,Perform: run one round of Racon polishing on an ONT assembly
racon,racon_05,racon_05_01,original,run second round of Racon polishing with default parameters
racon,racon_05,racon_05_02,beginner,How do I run second round of Racon polishing with default parameters?
racon,racon_05,racon_05_03,student,I need to run second round of Racon polishing with default parameters
racon,racon_05,racon_05_04,polite,Please run second round of Racon polishing with default parameters
racon,racon_05,racon_05_05,sysadmin,Use racon to run second round of Racon polishing with default parameters
racon,racon_05,racon_05_06,goal_oriented,I want to run second round of Racon polishing with default parameters
racon,racon_05,racon_05_07,expert,run second round of Racon polishing default parameters
racon,racon_05,racon_05_08,detailed,"I have data that I need to process: run second round of Racon polishing with default parameters, utilizing multiple CPU threads for speed"
racon,racon_05,racon_05_09,informal,"Hey, can you help me run second round of Racon polishing with default parameters?"
racon,racon_05,racon_05_10,alternative,"With default parameters, run second round of Racon polishing"
racon,racon_06,racon_06_01,original,run Racon polishing using SAM alignment instead of PAF
racon,racon_06,racon_06_02,beginner,How do I run Racon polishing using SAM alignment instead of PAF?
racon,racon_06,racon_06_03,student,I need to run Racon polishing using SAM alignment instead of PAF
racon,racon_06,racon_06_04,polite,Please run Racon polishing using SAM alignment instead of PAF
racon,racon_06,racon_06_05,sysadmin,Use racon to run Racon polishing using SAM alignment instead of PAF
racon,racon_06,racon_06_06,goal_oriented,I want to run Racon polishing using SAM alignment instead of PAF
racon,racon_06,racon_06_07,expert,run Racon polishing SAM alignment instead of PAF
racon,racon_06,racon_06_08,detailed,"I have data that I need to process: run Racon polishing using SAM alignment instead of PAF, utilizing multiple CPU threads for speed"
racon,racon_06,racon_06_09,informal,"Hey, can you help me run Racon polishing using SAM alignment instead of PAF?"
racon,racon_06,racon_06_10,alternative,Perform: run Racon polishing using SAM alignment instead of PAF
racon,racon_07,racon_07_01,original,run one round of Racon polishing on an ONT assembly
racon,racon_07,racon_07_02,beginner,How do I run one round of Racon polishing on an ONT assembly?
racon,racon_07,racon_07_03,student,I need to run one round of Racon polishing on an ONT assembly
racon,racon_07,racon_07_04,polite,Please run one round of Racon polishing on an ONT assembly
racon,racon_07,racon_07_05,sysadmin,Use racon to run one round of Racon polishing on an ONT assembly
racon,racon_07,racon_07_06,goal_oriented,I want to run one round of Racon polishing on an ONT assembly
racon,racon_07,racon_07_07,expert,run one round of Racon polishing on ONT assembly
racon,racon_07,racon_07_08,detailed,"I have data that I need to process: run one round of Racon polishing on an ONT assembly, utilizing multiple CPU threads for speed"
racon,racon_07,racon_07_09,informal,"Hey, can you help me run one round of Racon polishing on an ONT assembly?"
racon,racon_07,racon_07_10,alternative,Perform: run one round of Racon polishing on an ONT assembly
racon,racon_08,racon_08_01,original,run second round of Racon polishing
racon,racon_08,racon_08_02,beginner,How do I run second round of Racon polishing?
racon,racon_08,racon_08_03,student,I need to run second round of Racon polishing
racon,racon_08,racon_08_04,polite,Please run second round of Racon polishing
racon,racon_08,racon_08_05,sysadmin,Use racon to run second round of Racon polishing
racon,racon_08,racon_08_06,goal_oriented,I want to run second round of Racon polishing
racon,racon_08,racon_08_07,expert,run second round of Racon polishing
racon,racon_08,racon_08_08,detailed,"I have data that I need to process: run second round of Racon polishing, utilizing multiple CPU threads for speed"
racon,racon_08,racon_08_09,informal,"Hey, can you help me run second round of Racon polishing?"
racon,racon_08,racon_08_10,alternative,Perform: run second round of Racon polishing
racon,racon_09,racon_09_01,original,run Racon polishing using SAM alignment instead of PAF
racon,racon_09,racon_09_02,beginner,How do I run Racon polishing using SAM alignment instead of PAF?
racon,racon_09,racon_09_03,student,I need to run Racon polishing using SAM alignment instead of PAF
racon,racon_09,racon_09_04,polite,Please run Racon polishing using SAM alignment instead of PAF
racon,racon_09,racon_09_05,sysadmin,Use racon to run Racon polishing using SAM alignment instead of PAF
racon,racon_09,racon_09_06,goal_oriented,I want to run Racon polishing using SAM alignment instead of PAF
racon,racon_09,racon_09_07,expert,run Racon polishing SAM alignment instead of PAF
racon,racon_09,racon_09_08,detailed,"I have data that I need to process: run Racon polishing using SAM alignment instead of PAF, utilizing multiple CPU threads for speed"
racon,racon_09,racon_09_09,informal,"Hey, can you help me run Racon polishing using SAM alignment instead of PAF?"
racon,racon_09,racon_09_10,alternative,Perform: run Racon polishing using SAM alignment instead of PAF
racon,racon_10,racon_10_01,original,run one round of Racon polishing on an ONT assembly with default parameters
racon,racon_10,racon_10_02,beginner,How do I run one round of Racon polishing on an ONT assembly with default parameters?
racon,racon_10,racon_10_03,student,I need to run one round of Racon polishing on an ONT assembly with default parameters
racon,racon_10,racon_10_04,polite,Please run one round of Racon polishing on an ONT assembly with default parameters
racon,racon_10,racon_10_05,sysadmin,Use racon to run one round of Racon polishing on an ONT assembly with default parameters
racon,racon_10,racon_10_06,goal_oriented,I want to run one round of Racon polishing on an ONT assembly with default parameters
racon,racon_10,racon_10_07,expert,run one round of Racon polishing on ONT assembly default parameters
racon,racon_10,racon_10_08,detailed,"I have data that I need to process: run one round of Racon polishing on an ONT assembly with default parameters, utilizing multiple CPU threads for speed"
racon,racon_10,racon_10_09,informal,"Hey, can you help me run one round of Racon polishing on an ONT assembly with default parameters?"
racon,racon_10,racon_10_10,alternative,"With default parameters, run one round of Racon polishing on an ONT assembly"
repeatmasker,repeatmasker_01,repeatmasker_01_01,original,softmask repeats in a mammalian genome assembly
repeatmasker,repeatmasker_01,repeatmasker_01_02,beginner,How do I softmask repeats in a mammalian genome assembly?
repeatmasker,repeatmasker_01,repeatmasker_01_03,student,I need to softmask repeats in a mammalian genome assembly
repeatmasker,repeatmasker_01,repeatmasker_01_04,polite,Please softmask repeats in a mammalian genome assembly
repeatmasker,repeatmasker_01,repeatmasker_01_05,sysadmin,Use repeatmasker to softmask repeats in a mammalian genome assembly
repeatmasker,repeatmasker_01,repeatmasker_01_06,goal_oriented,I want to softmask repeats in a mammalian genome assembly
repeatmasker,repeatmasker_01,repeatmasker_01_07,expert,softmask repeats mammalian genome assembly
repeatmasker,repeatmasker_01,repeatmasker_01_08,detailed,I have data that I need to process: softmask repeats in a mammalian genome assembly
repeatmasker,repeatmasker_01,repeatmasker_01_09,informal,"Hey, can you help me softmask repeats in a mammalian genome assembly?"
repeatmasker,repeatmasker_01,repeatmasker_01_10,alternative,Perform: softmask repeats in a mammalian genome assembly
repeatmasker,repeatmasker_02,repeatmasker_02_01,original,hard-mask repeats in a plant genome
repeatmasker,repeatmasker_02,repeatmasker_02_02,beginner,How do I hard-mask repeats in a plant genome?
repeatmasker,repeatmasker_02,repeatmasker_02_03,student,I need to hard-mask repeats in a plant genome
repeatmasker,repeatmasker_02,repeatmasker_02_04,polite,Please hard-mask repeats in a plant genome
repeatmasker,repeatmasker_02,repeatmasker_02_05,sysadmin,Use repeatmasker to hard-mask repeats in a plant genome
repeatmasker,repeatmasker_02,repeatmasker_02_06,goal_oriented,I want to hard-mask repeats in a plant genome
repeatmasker,repeatmasker_02,repeatmasker_02_07,expert,hard-mask repeats plant genome
repeatmasker,repeatmasker_02,repeatmasker_02_08,detailed,I have data that I need to process: hard-mask repeats in a plant genome
repeatmasker,repeatmasker_02,repeatmasker_02_09,informal,"Hey, can you help me hard-mask repeats in a plant genome?"
repeatmasker,repeatmasker_02,repeatmasker_02_10,alternative,Perform: hard-mask repeats in a plant genome
repeatmasker,repeatmasker_03,repeatmasker_03_01,original,mask repeats using a custom library
repeatmasker,repeatmasker_03,repeatmasker_03_02,beginner,How do I mask repeats using a custom library?
repeatmasker,repeatmasker_03,repeatmasker_03_03,student,I need to mask repeats using a custom library
repeatmasker,repeatmasker_03,repeatmasker_03_04,polite,Please mask repeats using a custom library
repeatmasker,repeatmasker_03,repeatmasker_03_05,sysadmin,Use repeatmasker to mask repeats using a custom library
repeatmasker,repeatmasker_03,repeatmasker_03_06,goal_oriented,I want to mask repeats using a custom library
repeatmasker,repeatmasker_03,repeatmasker_03_07,expert,mask repeats custom library
repeatmasker,repeatmasker_03,repeatmasker_03_08,detailed,I have data that I need to process: mask repeats using a custom library
repeatmasker,repeatmasker_03,repeatmasker_03_09,informal,"Hey, can you help me mask repeats using a custom library?"
repeatmasker,repeatmasker_03,repeatmasker_03_10,alternative,Perform: mask repeats using a custom library
repeatmasker,repeatmasker_04,repeatmasker_04_01,original,mask only simple repeats and low-complexity regions
repeatmasker,repeatmasker_04,repeatmasker_04_02,beginner,How do I mask only simple repeats and low-complexity regions?
repeatmasker,repeatmasker_04,repeatmasker_04_03,student,I need to mask only simple repeats and low-complexity regions
repeatmasker,repeatmasker_04,repeatmasker_04_04,polite,Please mask only simple repeats and low-complexity regions
repeatmasker,repeatmasker_04,repeatmasker_04_05,sysadmin,Use repeatmasker to mask only simple repeats and low-complexity regions
repeatmasker,repeatmasker_04,repeatmasker_04_06,goal_oriented,I want to mask only simple repeats and low-complexity regions
repeatmasker,repeatmasker_04,repeatmasker_04_07,expert,mask only simple repeats low-complexity regions
repeatmasker,repeatmasker_04,repeatmasker_04_08,detailed,I have data that I need to process: mask only simple repeats and low-complexity regions
repeatmasker,repeatmasker_04,repeatmasker_04_09,informal,"Hey, can you help me mask only simple repeats and low-complexity regions?"
repeatmasker,repeatmasker_04,repeatmasker_04_10,alternative,Low-complexity regions after mask only simple repeats
repeatmasker,repeatmasker_05,repeatmasker_05_01,original,softmask repeats in a mammalian genome assembly with default parameters
repeatmasker,repeatmasker_05,repeatmasker_05_02,beginner,How do I softmask repeats in a mammalian genome assembly with default parameters?
repeatmasker,repeatmasker_05,repeatmasker_05_03,student,I need to softmask repeats in a mammalian genome assembly with default parameters
repeatmasker,repeatmasker_05,repeatmasker_05_04,polite,Please softmask repeats in a mammalian genome assembly with default parameters
repeatmasker,repeatmasker_05,repeatmasker_05_05,sysadmin,Use repeatmasker to softmask repeats in a mammalian genome assembly with default parameters
repeatmasker,repeatmasker_05,repeatmasker_05_06,goal_oriented,I want to softmask repeats in a mammalian genome assembly with default parameters
repeatmasker,repeatmasker_05,repeatmasker_05_07,expert,softmask repeats mammalian genome assembly default parameters
repeatmasker,repeatmasker_05,repeatmasker_05_08,detailed,I have data that I need to process: softmask repeats in a mammalian genome assembly with default parameters
repeatmasker,repeatmasker_05,repeatmasker_05_09,informal,"Hey, can you help me softmask repeats in a mammalian genome assembly with default parameters?"
repeatmasker,repeatmasker_05,repeatmasker_05_10,alternative,"With default parameters, softmask repeats in a mammalian genome assembly"
repeatmasker,repeatmasker_06,repeatmasker_06_01,original,hard-mask repeats in a plant genome with verbose output
repeatmasker,repeatmasker_06,repeatmasker_06_02,beginner,How do I hard-mask repeats in a plant genome with verbose output?
repeatmasker,repeatmasker_06,repeatmasker_06_03,student,I need to hard-mask repeats in a plant genome with verbose output
repeatmasker,repeatmasker_06,repeatmasker_06_04,polite,Please hard-mask repeats in a plant genome with verbose output
repeatmasker,repeatmasker_06,repeatmasker_06_05,sysadmin,Use repeatmasker to hard-mask repeats in a plant genome with verbose output
repeatmasker,repeatmasker_06,repeatmasker_06_06,goal_oriented,I want to hard-mask repeats in a plant genome with verbose output
repeatmasker,repeatmasker_06,repeatmasker_06_07,expert,hard-mask repeats plant genome verbose output
repeatmasker,repeatmasker_06,repeatmasker_06_08,detailed,I have data that I need to process: hard-mask repeats in a plant genome with verbose output
repeatmasker,repeatmasker_06,repeatmasker_06_09,informal,"Hey, can you help me hard-mask repeats in a plant genome with verbose output?"
repeatmasker,repeatmasker_06,repeatmasker_06_10,alternative,"With verbose output, hard-mask repeats in a plant genome"
repeatmasker,repeatmasker_07,repeatmasker_07_01,original,mask repeats using a custom library using multiple threads
repeatmasker,repeatmasker_07,repeatmasker_07_02,beginner,How do I mask repeats using a custom library using multiple threads?
repeatmasker,repeatmasker_07,repeatmasker_07_03,student,I need to mask repeats using a custom library using multiple threads
repeatmasker,repeatmasker_07,repeatmasker_07_04,polite,Please mask repeats using a custom library using multiple threads
repeatmasker,repeatmasker_07,repeatmasker_07_05,sysadmin,Use repeatmasker to mask repeats using a custom library using multiple threads
repeatmasker,repeatmasker_07,repeatmasker_07_06,goal_oriented,I want to mask repeats using a custom library using multiple threads
repeatmasker,repeatmasker_07,repeatmasker_07_07,expert,mask repeats custom library multiple threads
repeatmasker,repeatmasker_07,repeatmasker_07_08,detailed,"I have data that I need to process: mask repeats using a custom library using multiple threads, utilizing multiple CPU threads for speed"
repeatmasker,repeatmasker_07,repeatmasker_07_09,informal,"Hey, can you help me mask repeats using a custom library using multiple threads?"
repeatmasker,repeatmasker_07,repeatmasker_07_10,alternative,Perform: mask repeats using a custom library using multiple threads
repeatmasker,repeatmasker_08,repeatmasker_08_01,original,mask only simple repeats and low-complexity regions and write output to a file
repeatmasker,repeatmasker_08,repeatmasker_08_02,beginner,How do I mask only simple repeats and low-complexity regions and write output to a file?
repeatmasker,repeatmasker_08,repeatmasker_08_03,student,I need to mask only simple repeats and low-complexity regions and write output to a file
repeatmasker,repeatmasker_08,repeatmasker_08_04,polite,Please mask only simple repeats and low-complexity regions and write output to a file
repeatmasker,repeatmasker_08,repeatmasker_08_05,sysadmin,Use repeatmasker to mask only simple repeats and low-complexity regions and write output to a file
repeatmasker,repeatmasker_08,repeatmasker_08_06,goal_oriented,I want to mask only simple repeats and low-complexity regions and write output to a file
repeatmasker,repeatmasker_08,repeatmasker_08_07,expert,mask only simple repeats low-complexity regions write output file
repeatmasker,repeatmasker_08,repeatmasker_08_08,detailed,"I have data that I need to process: mask only simple repeats and low-complexity regions and write output to a file, saving the result to a specified output file"
repeatmasker,repeatmasker_08,repeatmasker_08_09,informal,"Hey, can you help me mask only simple repeats and low-complexity regions and write output to a file?"
repeatmasker,repeatmasker_08,repeatmasker_08_10,alternative,Low-complexity regions and write output to a file after mask only simple repeats
repeatmasker,repeatmasker_09,repeatmasker_09_01,original,softmask repeats in a mammalian genome assembly in quiet mode
repeatmasker,repeatmasker_09,repeatmasker_09_02,beginner,How do I softmask repeats in a mammalian genome assembly in quiet mode?
repeatmasker,repeatmasker_09,repeatmasker_09_03,student,I need to softmask repeats in a mammalian genome assembly in quiet mode
repeatmasker,repeatmasker_09,repeatmasker_09_04,polite,Please softmask repeats in a mammalian genome assembly in quiet mode
repeatmasker,repeatmasker_09,repeatmasker_09_05,sysadmin,Use repeatmasker to softmask repeats in a mammalian genome assembly in quiet mode
repeatmasker,repeatmasker_09,repeatmasker_09_06,goal_oriented,I want to softmask repeats in a mammalian genome assembly in quiet mode
repeatmasker,repeatmasker_09,repeatmasker_09_07,expert,softmask repeats mammalian genome assembly quiet mode
repeatmasker,repeatmasker_09,repeatmasker_09_08,detailed,I have data that I need to process: softmask repeats in a mammalian genome assembly in quiet mode
repeatmasker,repeatmasker_09,repeatmasker_09_09,informal,"Hey, can you help me softmask repeats in a mammalian genome assembly in quiet mode?"
repeatmasker,repeatmasker_09,repeatmasker_09_10,alternative,Perform: softmask repeats in a mammalian genome assembly in quiet mode
repeatmasker,repeatmasker_10,repeatmasker_10_01,original,hard-mask repeats in a plant genome with default parameters
repeatmasker,repeatmasker_10,repeatmasker_10_02,beginner,How do I hard-mask repeats in a plant genome with default parameters?
repeatmasker,repeatmasker_10,repeatmasker_10_03,student,I need to hard-mask repeats in a plant genome with default parameters
repeatmasker,repeatmasker_10,repeatmasker_10_04,polite,Please hard-mask repeats in a plant genome with default parameters
repeatmasker,repeatmasker_10,repeatmasker_10_05,sysadmin,Use repeatmasker to hard-mask repeats in a plant genome with default parameters
repeatmasker,repeatmasker_10,repeatmasker_10_06,goal_oriented,I want to hard-mask repeats in a plant genome with default parameters
repeatmasker,repeatmasker_10,repeatmasker_10_07,expert,hard-mask repeats plant genome default parameters
repeatmasker,repeatmasker_10,repeatmasker_10_08,detailed,I have data that I need to process: hard-mask repeats in a plant genome with default parameters
repeatmasker,repeatmasker_10,repeatmasker_10_09,informal,"Hey, can you help me hard-mask repeats in a plant genome with default parameters?"
repeatmasker,repeatmasker_10,repeatmasker_10_10,alternative,"With default parameters, hard-mask repeats in a plant genome"
rm,rm_01,rm_01_01,original,remove a single file
rm,rm_01,rm_01_02,beginner,How do I remove a single file?
rm,rm_01,rm_01_03,student,I need to remove a single file
rm,rm_01,rm_01_04,polite,Please remove a single file
rm,rm_01,rm_01_05,sysadmin,Use rm to remove a single file
rm,rm_01,rm_01_06,goal_oriented,I want to remove a single file
rm,rm_01,rm_01_07,expert,remove single file
rm,rm_01,rm_01_08,detailed,I have data that I need to process: remove a single file
rm,rm_01,rm_01_09,informal,"Hey, can you help me remove a single file?"
rm,rm_01,rm_01_10,alternative,Perform: remove a single file
rm,rm_02,rm_02_01,original,remove multiple files matching a pattern
rm,rm_02,rm_02_02,beginner,How do I remove multiple files matching a pattern?
rm,rm_02,rm_02_03,student,I need to remove multiple files matching a pattern
rm,rm_02,rm_02_04,polite,Please remove multiple files matching a pattern
rm,rm_02,rm_02_05,sysadmin,Use rm to remove multiple files matching a pattern
rm,rm_02,rm_02_06,goal_oriented,I want to remove multiple files matching a pattern
rm,rm_02,rm_02_07,expert,remove multiple files matching pattern
rm,rm_02,rm_02_08,detailed,I have data that I need to process: remove multiple files matching a pattern
rm,rm_02,rm_02_09,informal,"Hey, can you help me remove multiple files matching a pattern?"
rm,rm_02,rm_02_10,alternative,Perform: remove multiple files matching a pattern
rm,rm_03,rm_03_01,original,remove a directory and all its contents
rm,rm_03,rm_03_02,beginner,How do I remove a directory and all its contents?
rm,rm_03,rm_03_03,student,I need to remove a directory and all its contents
rm,rm_03,rm_03_04,polite,Please remove a directory and all its contents
rm,rm_03,rm_03_05,sysadmin,Use rm to remove a directory and all its contents
rm,rm_03,rm_03_06,goal_oriented,I want to remove a directory and all its contents
rm,rm_03,rm_03_07,expert,remove directory all its contents
rm,rm_03,rm_03_08,detailed,I have data that I need to process: remove a directory and all its contents
rm,rm_03,rm_03_09,informal,"Hey, can you help me remove a directory and all its contents?"
rm,rm_03,rm_03_10,alternative,All its contents after remove a directory
rm,rm_04,rm_04_01,original,"interactively remove files, asking for confirmation before each deletion"
rm,rm_04,rm_04_02,beginner,"How do I interactively remove files, asking for confirmation before each deletion?"
rm,rm_04,rm_04_03,student,"I need to interactively remove files, asking for confirmation before each deletion"
rm,rm_04,rm_04_04,polite,"Please interactively remove files, asking for confirmation before each deletion"
rm,rm_04,rm_04_05,sysadmin,"Use rm to interactively remove files, asking for confirmation before each deletion"
rm,rm_04,rm_04_06,goal_oriented,"I want to interactively remove files, asking for confirmation before each deletion"
rm,rm_04,rm_04_07,expert,"interactively remove files, asking confirmation before each deletion"
rm,rm_04,rm_04_08,detailed,"I have data that I need to process: interactively remove files, asking for confirmation before each deletion"
rm,rm_04,rm_04_09,informal,"Hey, can you help me interactively remove files, asking for confirmation before each deletion?"
rm,rm_04,rm_04_10,alternative,"Perform: interactively remove files, asking for confirmation before each deletion"
rm,rm_05,rm_05_01,original,force-remove a directory and its contents without prompts
rm,rm_05,rm_05_02,beginner,How do I force-remove a directory and its contents without prompts?
rm,rm_05,rm_05_03,student,I need to force-remove a directory and its contents without prompts
rm,rm_05,rm_05_04,polite,Please force-remove a directory and its contents without prompts
rm,rm_05,rm_05_05,sysadmin,Use rm to force-remove a directory and its contents without prompts
rm,rm_05,rm_05_06,goal_oriented,I want to force-remove a directory and its contents without prompts
rm,rm_05,rm_05_07,expert,force-remove directory its contents without prompts
rm,rm_05,rm_05_08,detailed,I have data that I need to process: force-remove a directory and its contents without prompts
rm,rm_05,rm_05_09,informal,"Hey, can you help me force-remove a directory and its contents without prompts?"
rm,rm_05,rm_05_10,alternative,Its contents without prompts after force-remove a directory
rm,rm_06,rm_06_01,original,force-remove a stale build directory
rm,rm_06,rm_06_02,beginner,How do I force-remove a stale build directory?
rm,rm_06,rm_06_03,student,I need to force-remove a stale build directory
rm,rm_06,rm_06_04,polite,Please force-remove a stale build directory
rm,rm_06,rm_06_05,sysadmin,Use rm to force-remove a stale build directory
rm,rm_06,rm_06_06,goal_oriented,I want to force-remove a stale build directory
rm,rm_06,rm_06_07,expert,force-remove stale build directory
rm,rm_06,rm_06_08,detailed,I have data that I need to process: force-remove a stale build directory
rm,rm_06,rm_06_09,informal,"Hey, can you help me force-remove a stale build directory?"
rm,rm_06,rm_06_10,alternative,Perform: force-remove a stale build directory
rm,rm_07,rm_07_01,original,remove a file with a name starting with a dash
rm,rm_07,rm_07_02,beginner,How do I remove a file with a name starting with a dash?
rm,rm_07,rm_07_03,student,I need to remove a file with a name starting with a dash
rm,rm_07,rm_07_04,polite,Please remove a file with a name starting with a dash
rm,rm_07,rm_07_05,sysadmin,Use rm to remove a file with a name starting with a dash
rm,rm_07,rm_07_06,goal_oriented,I want to remove a file with a name starting with a dash
rm,rm_07,rm_07_07,expert,remove file name starting dash
rm,rm_07,rm_07_08,detailed,I have data that I need to process: remove a file with a name starting with a dash
rm,rm_07,rm_07_09,informal,"Hey, can you help me remove a file with a name starting with a dash?"
rm,rm_07,rm_07_10,alternative,"With a name starting with a dash, remove a file"
rm,rm_08,rm_08_01,original,remove an empty directory
rm,rm_08,rm_08_02,beginner,How do I remove an empty directory?
rm,rm_08,rm_08_03,student,I need to remove an empty directory
rm,rm_08,rm_08_04,polite,Please remove an empty directory
rm,rm_08,rm_08_05,sysadmin,Use rm to remove an empty directory
rm,rm_08,rm_08_06,goal_oriented,I want to remove an empty directory
rm,rm_08,rm_08_07,expert,remove empty directory
rm,rm_08,rm_08_08,detailed,I have data that I need to process: remove an empty directory
rm,rm_08,rm_08_09,informal,"Hey, can you help me remove an empty directory?"
rm,rm_08,rm_08_10,alternative,Perform: remove an empty directory
rm,rm_09,rm_09_01,original,verbosely remove all files of a specific type in the current directory
rm,rm_09,rm_09_02,beginner,How do I verbosely remove all files of a specific type in the current directory?
rm,rm_09,rm_09_03,student,I need to verbosely remove all files of a specific type in the current directory
rm,rm_09,rm_09_04,polite,Please verbosely remove all files of a specific type in the current directory
rm,rm_09,rm_09_05,sysadmin,Use rm to verbosely remove all files of a specific type in the current directory
rm,rm_09,rm_09_06,goal_oriented,I want to verbosely remove all files of a specific type in the current directory
rm,rm_09,rm_09_07,expert,verbosely remove all files of specific type current directory
rm,rm_09,rm_09_08,detailed,I have data that I need to process: verbosely remove all files of a specific type in the current directory
rm,rm_09,rm_09_09,informal,"Hey, can you help me verbosely remove all files of a specific type in the current directory?"
rm,rm_09,rm_09_10,alternative,Perform: verbosely remove all files of a specific type in the current directory
rm,rm_10,rm_10_01,original,remove a symbolic link without following it to the target
rm,rm_10,rm_10_02,beginner,How do I remove a symbolic link without following it to the target?
rm,rm_10,rm_10_03,student,I need to remove a symbolic link without following it to the target
rm,rm_10,rm_10_04,polite,Please remove a symbolic link without following it to the target
rm,rm_10,rm_10_05,sysadmin,Use rm to remove a symbolic link without following it to the target
rm,rm_10,rm_10_06,goal_oriented,I want to remove a symbolic link without following it to the target
rm,rm_10,rm_10_07,expert,remove symbolic link without following it target
rm,rm_10,rm_10_08,detailed,I have data that I need to process: remove a symbolic link without following it to the target
rm,rm_10,rm_10_09,informal,"Hey, can you help me remove a symbolic link without following it to the target?"
rm,rm_10,rm_10_10,alternative,Output the target by performing: remove a symbolic link without following it
rsem,rsem_01,rsem_01_01,original,prepare RSEM reference from genome FASTA and GTF annotation
rsem,rsem_01,rsem_01_02,beginner,How do I prepare RSEM reference from genome FASTA and GTF annotation?
rsem,rsem_01,rsem_01_03,student,I need to prepare RSEM reference from genome FASTA and GTF annotation
rsem,rsem_01,rsem_01_04,polite,Please prepare RSEM reference from genome FASTA and GTF annotation
rsem,rsem_01,rsem_01_05,sysadmin,Use rsem to prepare RSEM reference from genome FASTA and GTF annotation
rsem,rsem_01,rsem_01_06,goal_oriented,I want to prepare RSEM reference from genome FASTA and GTF annotation
rsem,rsem_01,rsem_01_07,expert,prepare RSEM reference genome FASTA GTF annotation
rsem,rsem_01,rsem_01_08,detailed,I have data that I need to process: prepare RSEM reference from genome FASTA and GTF annotation
rsem,rsem_01,rsem_01_09,informal,"Hey, can you help me prepare RSEM reference from genome FASTA and GTF annotation?"
rsem,rsem_01,rsem_01_10,alternative,GTF annotation after prepare RSEM reference from genome FASTA
rsem,rsem_02,rsem_02_01,original,quantify paired-end RNA-seq reads using RSEM with Bowtie2
rsem,rsem_02,rsem_02_02,beginner,How do I quantify paired-end RNA-seq reads using RSEM with Bowtie2?
rsem,rsem_02,rsem_02_03,student,I need to quantify paired-end RNA-seq reads using RSEM with Bowtie2
rsem,rsem_02,rsem_02_04,polite,Please quantify paired-end RNA-seq reads using RSEM with Bowtie2
rsem,rsem_02,rsem_02_05,sysadmin,Use rsem to quantify paired-end RNA-seq reads using RSEM with Bowtie2
rsem,rsem_02,rsem_02_06,goal_oriented,I want to quantify paired-end RNA-seq reads using RSEM with Bowtie2
rsem,rsem_02,rsem_02_07,expert,quantify paired-end RNA-seq reads RSEM Bowtie2
rsem,rsem_02,rsem_02_08,detailed,I have data that I need to process: quantify paired-end RNA-seq reads using RSEM with Bowtie2
rsem,rsem_02,rsem_02_09,informal,"Hey, can you help me quantify paired-end RNA-seq reads using RSEM with Bowtie2?"
rsem,rsem_02,rsem_02_10,alternative,"With Bowtie2, quantify paired-end RNA-seq reads using RSEM"
rsem,rsem_03,rsem_03_01,original,quantify RNA-seq using RSEM with STAR aligner
rsem,rsem_03,rsem_03_02,beginner,How do I quantify RNA-seq using RSEM with STAR aligner?
rsem,rsem_03,rsem_03_03,student,I need to quantify RNA-seq using RSEM with STAR aligner
rsem,rsem_03,rsem_03_04,polite,Please quantify RNA-seq using RSEM with STAR aligner
rsem,rsem_03,rsem_03_05,sysadmin,Use rsem to quantify RNA-seq using RSEM with STAR aligner
rsem,rsem_03,rsem_03_06,goal_oriented,I want to quantify RNA-seq using RSEM with STAR aligner
rsem,rsem_03,rsem_03_07,expert,quantify RNA-seq RSEM STAR aligner
rsem,rsem_03,rsem_03_08,detailed,I have data that I need to process: quantify RNA-seq using RSEM with STAR aligner
rsem,rsem_03,rsem_03_09,informal,"Hey, can you help me quantify RNA-seq using RSEM with STAR aligner?"
rsem,rsem_03,rsem_03_10,alternative,"With STAR aligner, quantify RNA-seq using RSEM"
rsem,rsem_04,rsem_04_01,original,prepare RSEM reference directly from transcriptome FASTA
rsem,rsem_04,rsem_04_02,beginner,How do I prepare RSEM reference directly from transcriptome FASTA?
rsem,rsem_04,rsem_04_03,student,I need to prepare RSEM reference directly from transcriptome FASTA
rsem,rsem_04,rsem_04_04,polite,Please prepare RSEM reference directly from transcriptome FASTA
rsem,rsem_04,rsem_04_05,sysadmin,Use rsem to prepare RSEM reference directly from transcriptome FASTA
rsem,rsem_04,rsem_04_06,goal_oriented,I want to prepare RSEM reference directly from transcriptome FASTA
rsem,rsem_04,rsem_04_07,expert,prepare RSEM reference directly transcriptome FASTA
rsem,rsem_04,rsem_04_08,detailed,I have data that I need to process: prepare RSEM reference directly from transcriptome FASTA
rsem,rsem_04,rsem_04_09,informal,"Hey, can you help me prepare RSEM reference directly from transcriptome FASTA?"
rsem,rsem_04,rsem_04_10,alternative,Perform: prepare RSEM reference directly from transcriptome FASTA
rsem,rsem_05,rsem_05_01,original,generate count matrix from multiple RSEM results files for DESeq2
rsem,rsem_05,rsem_05_02,beginner,How do I generate count matrix from multiple RSEM results files for DESeq2?
rsem,rsem_05,rsem_05_03,student,I need to generate count matrix from multiple RSEM results files for DESeq2
rsem,rsem_05,rsem_05_04,polite,Please generate count matrix from multiple RSEM results files for DESeq2
rsem,rsem_05,rsem_05_05,sysadmin,Use rsem to generate count matrix from multiple RSEM results files for DESeq2
rsem,rsem_05,rsem_05_06,goal_oriented,I want to generate count matrix from multiple RSEM results files for DESeq2
rsem,rsem_05,rsem_05_07,expert,generate count matrix multiple RSEM results files DESeq2
rsem,rsem_05,rsem_05_08,detailed,I have data that I need to process: generate count matrix from multiple RSEM results files for DESeq2
rsem,rsem_05,rsem_05_09,informal,"Hey, can you help me generate count matrix from multiple RSEM results files for DESeq2?"
rsem,rsem_05,rsem_05_10,alternative,Perform: generate count matrix from multiple RSEM results files for DESeq2
rsem,rsem_06,rsem_06_01,original,quantify single-end RNA-seq reads using RSEM
rsem,rsem_06,rsem_06_02,beginner,How do I quantify single-end RNA-seq reads using RSEM?
rsem,rsem_06,rsem_06_03,student,I need to quantify single-end RNA-seq reads using RSEM
rsem,rsem_06,rsem_06_04,polite,Please quantify single-end RNA-seq reads using RSEM
rsem,rsem_06,rsem_06_05,sysadmin,Use rsem to quantify single-end RNA-seq reads using RSEM
rsem,rsem_06,rsem_06_06,goal_oriented,I want to quantify single-end RNA-seq reads using RSEM
rsem,rsem_06,rsem_06_07,expert,quantify single-end RNA-seq reads RSEM
rsem,rsem_06,rsem_06_08,detailed,I have data that I need to process: quantify single-end RNA-seq reads using RSEM
rsem,rsem_06,rsem_06_09,informal,"Hey, can you help me quantify single-end RNA-seq reads using RSEM?"
rsem,rsem_06,rsem_06_10,alternative,Perform: quantify single-end RNA-seq reads using RSEM
rsem,rsem_07,rsem_07_01,original,prepare RSEM reference with Bowtie2 and poly-A trimming for scRNA-seq
rsem,rsem_07,rsem_07_02,beginner,How do I prepare RSEM reference with Bowtie2 and poly-A trimming for scRNA-seq?
rsem,rsem_07,rsem_07_03,student,I need to prepare RSEM reference with Bowtie2 and poly-A trimming for scRNA-seq
rsem,rsem_07,rsem_07_04,polite,Please prepare RSEM reference with Bowtie2 and poly-A trimming for scRNA-seq
rsem,rsem_07,rsem_07_05,sysadmin,Use rsem to prepare RSEM reference with Bowtie2 and poly-A trimming for scRNA-seq
rsem,rsem_07,rsem_07_06,goal_oriented,I want to prepare RSEM reference with Bowtie2 and poly-A trimming for scRNA-seq
rsem,rsem_07,rsem_07_07,expert,prepare RSEM reference Bowtie2 poly-A trimming scRNA-seq
rsem,rsem_07,rsem_07_08,detailed,I have data that I need to process: prepare RSEM reference with Bowtie2 and poly-A trimming for scRNA-seq
rsem,rsem_07,rsem_07_09,informal,"Hey, can you help me prepare RSEM reference with Bowtie2 and poly-A trimming for scRNA-seq?"
rsem,rsem_07,rsem_07_10,alternative,Poly-A trimming for scRNA-seq after prepare RSEM reference with Bowtie2
rsem,rsem_08,rsem_08_01,original,quantify with RSEM and estimate read start position distribution
rsem,rsem_08,rsem_08_02,beginner,How do I quantify with RSEM and estimate read start position distribution?
rsem,rsem_08,rsem_08_03,student,I need to quantify with RSEM and estimate read start position distribution
rsem,rsem_08,rsem_08_04,polite,Please quantify with RSEM and estimate read start position distribution
rsem,rsem_08,rsem_08_05,sysadmin,Use rsem to quantify with RSEM and estimate read start position distribution
rsem,rsem_08,rsem_08_06,goal_oriented,I want to quantify with RSEM and estimate read start position distribution
rsem,rsem_08,rsem_08_07,expert,quantify RSEM estimate read start position distribution
rsem,rsem_08,rsem_08_08,detailed,I have data that I need to process: quantify with RSEM and estimate read start position distribution
rsem,rsem_08,rsem_08_09,informal,"Hey, can you help me quantify with RSEM and estimate read start position distribution?"
rsem,rsem_08,rsem_08_10,alternative,Estimate read start position distribution after quantify with RSEM
rsem,rsem_09,rsem_09_01,original,extract TPM column from RSEM gene results for cross-sample comparison
rsem,rsem_09,rsem_09_02,beginner,How do I extract TPM column from RSEM gene results for cross-sample comparison?
rsem,rsem_09,rsem_09_03,student,I need to extract TPM column from RSEM gene results for cross-sample comparison
rsem,rsem_09,rsem_09_04,polite,Please extract TPM column from RSEM gene results for cross-sample comparison
rsem,rsem_09,rsem_09_05,sysadmin,Use rsem to extract TPM column from RSEM gene results for cross-sample comparison
rsem,rsem_09,rsem_09_06,goal_oriented,I want to extract TPM column from RSEM gene results for cross-sample comparison
rsem,rsem_09,rsem_09_07,expert,extract TPM column RSEM gene results cross-sample comparison
rsem,rsem_09,rsem_09_08,detailed,I have data that I need to process: extract TPM column from RSEM gene results for cross-sample comparison
rsem,rsem_09,rsem_09_09,informal,"Hey, can you help me extract TPM column from RSEM gene results for cross-sample comparison?"
rsem,rsem_09,rsem_09_10,alternative,Perform: extract TPM column from RSEM gene results for cross-sample comparison
rsem,rsem_10,rsem_10_01,original,calculate expression with confidence intervals for uncertainty estimation
rsem,rsem_10,rsem_10_02,beginner,How do I calculate expression with confidence intervals for uncertainty estimation?
rsem,rsem_10,rsem_10_03,student,I need to calculate expression with confidence intervals for uncertainty estimation
rsem,rsem_10,rsem_10_04,polite,Please calculate expression with confidence intervals for uncertainty estimation
rsem,rsem_10,rsem_10_05,sysadmin,Use rsem to calculate expression with confidence intervals for uncertainty estimation
rsem,rsem_10,rsem_10_06,goal_oriented,I want to calculate expression with confidence intervals for uncertainty estimation
rsem,rsem_10,rsem_10_07,expert,calculate expression confidence intervals uncertainty estimation
rsem,rsem_10,rsem_10_08,detailed,I have data that I need to process: calculate expression with confidence intervals for uncertainty estimation
rsem,rsem_10,rsem_10_09,informal,"Hey, can you help me calculate expression with confidence intervals for uncertainty estimation?"
rsem,rsem_10,rsem_10_10,alternative,"With confidence intervals for uncertainty estimation, calculate expression"
rseqc,rseqc_01,rseqc_01_01,original,infer library strandedness from a BAM
rseqc,rseqc_01,rseqc_01_02,beginner,How do I infer library strandedness from a BAM?
rseqc,rseqc_01,rseqc_01_03,student,I need to infer library strandedness from a BAM
rseqc,rseqc_01,rseqc_01_04,polite,Please infer library strandedness from a BAM
rseqc,rseqc_01,rseqc_01_05,sysadmin,Use rseqc to infer library strandedness from a BAM
rseqc,rseqc_01,rseqc_01_06,goal_oriented,I want to infer library strandedness from a BAM
rseqc,rseqc_01,rseqc_01_07,expert,infer library strandedness BAM
rseqc,rseqc_01,rseqc_01_08,detailed,I have data that I need to process: infer library strandedness from a BAM
rseqc,rseqc_01,rseqc_01_09,informal,"Hey, can you help me infer library strandedness from a BAM?"
rseqc,rseqc_01,rseqc_01_10,alternative,Perform: infer library strandedness from a BAM
rseqc,rseqc_02,rseqc_02_01,original,get read distribution across genomic features
rseqc,rseqc_02,rseqc_02_02,beginner,How do I get read distribution across genomic features?
rseqc,rseqc_02,rseqc_02_03,student,I need to get read distribution across genomic features
rseqc,rseqc_02,rseqc_02_04,polite,Please get read distribution across genomic features
rseqc,rseqc_02,rseqc_02_05,sysadmin,Use rseqc to get read distribution across genomic features
rseqc,rseqc_02,rseqc_02_06,goal_oriented,I want to get read distribution across genomic features
rseqc,rseqc_02,rseqc_02_07,expert,get read distribution across genomic features
rseqc,rseqc_02,rseqc_02_08,detailed,I have data that I need to process: get read distribution across genomic features
rseqc,rseqc_02,rseqc_02_09,informal,"Hey, can you help me get read distribution across genomic features?"
rseqc,rseqc_02,rseqc_02_10,alternative,Perform: get read distribution across genomic features
rseqc,rseqc_03,rseqc_03_01,original,annotate splice junctions
rseqc,rseqc_03,rseqc_03_02,beginner,How do I annotate splice junctions?
rseqc,rseqc_03,rseqc_03_03,student,I need to annotate splice junctions
rseqc,rseqc_03,rseqc_03_04,polite,Please annotate splice junctions
rseqc,rseqc_03,rseqc_03_05,sysadmin,Use rseqc to annotate splice junctions
rseqc,rseqc_03,rseqc_03_06,goal_oriented,I want to annotate splice junctions
rseqc,rseqc_03,rseqc_03_07,expert,annotate splice junctions
rseqc,rseqc_03,rseqc_03_08,detailed,"I have data that I need to process: annotate splice junctions, saving the result to a specified output file"
rseqc,rseqc_03,rseqc_03_09,informal,"Hey, can you help me annotate splice junctions?"
rseqc,rseqc_03,rseqc_03_10,alternative,Perform: annotate splice junctions
rseqc,rseqc_04,rseqc_04_01,original,check saturation of junction detection
rseqc,rseqc_04,rseqc_04_02,beginner,How do I check saturation of junction detection?
rseqc,rseqc_04,rseqc_04_03,student,I need to check saturation of junction detection
rseqc,rseqc_04,rseqc_04_04,polite,Please check saturation of junction detection
rseqc,rseqc_04,rseqc_04_05,sysadmin,Use rseqc to check saturation of junction detection
rseqc,rseqc_04,rseqc_04_06,goal_oriented,I want to check saturation of junction detection
rseqc,rseqc_04,rseqc_04_07,expert,check saturation of junction detection
rseqc,rseqc_04,rseqc_04_08,detailed,"I have data that I need to process: check saturation of junction detection, saving the result to a specified output file"
rseqc,rseqc_04,rseqc_04_09,informal,"Hey, can you help me check saturation of junction detection?"
rseqc,rseqc_04,rseqc_04_10,alternative,Perform: check saturation of junction detection
rseqc,rseqc_05,rseqc_05_01,original,compute BAM statistics
rseqc,rseqc_05,rseqc_05_02,beginner,How do I compute BAM statistics?
rseqc,rseqc_05,rseqc_05_03,student,I need to compute BAM statistics
rseqc,rseqc_05,rseqc_05_04,polite,Please compute BAM statistics
rseqc,rseqc_05,rseqc_05_05,sysadmin,Use rseqc to compute BAM statistics
rseqc,rseqc_05,rseqc_05_06,goal_oriented,I want to compute BAM statistics
rseqc,rseqc_05,rseqc_05_07,expert,compute BAM statistics
rseqc,rseqc_05,rseqc_05_08,detailed,I have data that I need to process: compute BAM statistics
rseqc,rseqc_05,rseqc_05_09,informal,"Hey, can you help me compute BAM statistics?"
rseqc,rseqc_05,rseqc_05_10,alternative,Perform: compute BAM statistics
rseqc,rseqc_06,rseqc_06_01,original,measure transcript integrity (RNA quality)
rseqc,rseqc_06,rseqc_06_02,beginner,How do I measure transcript integrity (RNA quality)?
rseqc,rseqc_06,rseqc_06_03,student,I need to measure transcript integrity (RNA quality)
rseqc,rseqc_06,rseqc_06_04,polite,Please measure transcript integrity (RNA quality)
rseqc,rseqc_06,rseqc_06_05,sysadmin,Use rseqc to measure transcript integrity (RNA quality)
rseqc,rseqc_06,rseqc_06_06,goal_oriented,I want to measure transcript integrity (RNA quality)
rseqc,rseqc_06,rseqc_06_07,expert,measure transcript integrity (RNA quality)
rseqc,rseqc_06,rseqc_06_08,detailed,I have data that I need to process: measure transcript integrity (RNA quality)
rseqc,rseqc_06,rseqc_06_09,informal,"Hey, can you help me measure transcript integrity (RNA quality)?"
rseqc,rseqc_06,rseqc_06_10,alternative,Perform: measure transcript integrity (RNA quality)
rseqc,rseqc_07,rseqc_07_01,original,estimate inner distance for paired-end RNA-seq
rseqc,rseqc_07,rseqc_07_02,beginner,How do I estimate inner distance for paired-end RNA-seq?
rseqc,rseqc_07,rseqc_07_03,student,I need to estimate inner distance for paired-end RNA-seq
rseqc,rseqc_07,rseqc_07_04,polite,Please estimate inner distance for paired-end RNA-seq
rseqc,rseqc_07,rseqc_07_05,sysadmin,Use rseqc to estimate inner distance for paired-end RNA-seq
rseqc,rseqc_07,rseqc_07_06,goal_oriented,I want to estimate inner distance for paired-end RNA-seq
rseqc,rseqc_07,rseqc_07_07,expert,estimate inner distance paired-end RNA-seq
rseqc,rseqc_07,rseqc_07_08,detailed,"I have data that I need to process: estimate inner distance for paired-end RNA-seq, saving the result to a specified output file"
rseqc,rseqc_07,rseqc_07_09,informal,"Hey, can you help me estimate inner distance for paired-end RNA-seq?"
rseqc,rseqc_07,rseqc_07_10,alternative,Perform: estimate inner distance for paired-end RNA-seq
rseqc,rseqc_08,rseqc_08_01,original,check for read duplication rate
rseqc,rseqc_08,rseqc_08_02,beginner,How do I check for read duplication rate?
rseqc,rseqc_08,rseqc_08_03,student,I need to check for read duplication rate
rseqc,rseqc_08,rseqc_08_04,polite,Please check for read duplication rate
rseqc,rseqc_08,rseqc_08_05,sysadmin,Use rseqc to check for read duplication rate
rseqc,rseqc_08,rseqc_08_06,goal_oriented,I want to check for read duplication rate
rseqc,rseqc_08,rseqc_08_07,expert,check read duplication rate
rseqc,rseqc_08,rseqc_08_08,detailed,"I have data that I need to process: check for read duplication rate, saving the result to a specified output file"
rseqc,rseqc_08,rseqc_08_09,informal,"Hey, can you help me check for read duplication rate?"
rseqc,rseqc_08,rseqc_08_10,alternative,Perform: check for read duplication rate
rseqc,rseqc_09,rseqc_09_01,original,infer library strandedness from a BAM in quiet mode
rseqc,rseqc_09,rseqc_09_02,beginner,How do I infer library strandedness from a BAM in quiet mode?
rseqc,rseqc_09,rseqc_09_03,student,I need to infer library strandedness from a BAM in quiet mode
rseqc,rseqc_09,rseqc_09_04,polite,Please infer library strandedness from a BAM in quiet mode
rseqc,rseqc_09,rseqc_09_05,sysadmin,Use rseqc to infer library strandedness from a BAM in quiet mode
rseqc,rseqc_09,rseqc_09_06,goal_oriented,I want to infer library strandedness from a BAM in quiet mode
rseqc,rseqc_09,rseqc_09_07,expert,infer library strandedness BAM quiet mode
rseqc,rseqc_09,rseqc_09_08,detailed,I have data that I need to process: infer library strandedness from a BAM in quiet mode
rseqc,rseqc_09,rseqc_09_09,informal,"Hey, can you help me infer library strandedness from a BAM in quiet mode?"
rseqc,rseqc_09,rseqc_09_10,alternative,Perform: infer library strandedness from a BAM in quiet mode
rseqc,rseqc_10,rseqc_10_01,original,get read distribution across genomic features with default parameters
rseqc,rseqc_10,rseqc_10_02,beginner,How do I get read distribution across genomic features with default parameters?
rseqc,rseqc_10,rseqc_10_03,student,I need to get read distribution across genomic features with default parameters
rseqc,rseqc_10,rseqc_10_04,polite,Please get read distribution across genomic features with default parameters
rseqc,rseqc_10,rseqc_10_05,sysadmin,Use rseqc to get read distribution across genomic features with default parameters
rseqc,rseqc_10,rseqc_10_06,goal_oriented,I want to get read distribution across genomic features with default parameters
rseqc,rseqc_10,rseqc_10_07,expert,get read distribution across genomic features default parameters
rseqc,rseqc_10,rseqc_10_08,detailed,I have data that I need to process: get read distribution across genomic features with default parameters
rseqc,rseqc_10,rseqc_10_09,informal,"Hey, can you help me get read distribution across genomic features with default parameters?"
rseqc,rseqc_10,rseqc_10_10,alternative,"With default parameters, get read distribution across genomic features"
rsync,rsync_01,rsync_01_01,original,sync a local directory to a remote server with verbose output and compression
rsync,rsync_01,rsync_01_02,beginner,How do I sync a local directory to a remote server with verbose output and compression?
rsync,rsync_01,rsync_01_03,student,I need to sync a local directory to a remote server with verbose output and compression
rsync,rsync_01,rsync_01_04,polite,Please sync a local directory to a remote server with verbose output and compression
rsync,rsync_01,rsync_01_05,sysadmin,Use rsync to sync a local directory to a remote server with verbose output and compression
rsync,rsync_01,rsync_01_06,goal_oriented,I want to sync a local directory to a remote server with verbose output and compression
rsync,rsync_01,rsync_01_07,expert,sync local directory remote server verbose output compression
rsync,rsync_01,rsync_01_08,detailed,I have data that I need to process: sync a local directory to a remote server with verbose output and compression
rsync,rsync_01,rsync_01_09,informal,"Hey, can you help me sync a local directory to a remote server with verbose output and compression?"
rsync,rsync_01,rsync_01_10,alternative,Compression after sync a local directory to a remote server with verbose output
rsync,rsync_02,rsync_02_01,original,dry-run to preview what would be transferred
rsync,rsync_02,rsync_02_02,beginner,How do I dry-run to preview what would be transferred?
rsync,rsync_02,rsync_02_03,student,I need to dry-run to preview what would be transferred
rsync,rsync_02,rsync_02_04,polite,Please dry-run to preview what would be transferred
rsync,rsync_02,rsync_02_05,sysadmin,Use rsync to dry-run to preview what would be transferred
rsync,rsync_02,rsync_02_06,goal_oriented,I want to dry-run to preview what would be transferred
rsync,rsync_02,rsync_02_07,expert,dry-run preview what would be transferred
rsync,rsync_02,rsync_02_08,detailed,I have data that I need to process: dry-run to preview what would be transferred
rsync,rsync_02,rsync_02_09,informal,"Hey, can you help me dry-run to preview what would be transferred?"
rsync,rsync_02,rsync_02_10,alternative,Output preview what would be transferred by performing: dry-run
rsync,rsync_03,rsync_03_01,original,"mirror source to destination, deleting removed files"
rsync,rsync_03,rsync_03_02,beginner,"How do I mirror source to destination, deleting removed files?"
rsync,rsync_03,rsync_03_03,student,"I need to mirror source to destination, deleting removed files"
rsync,rsync_03,rsync_03_04,polite,"Please mirror source to destination, deleting removed files"
rsync,rsync_03,rsync_03_05,sysadmin,"Use rsync to mirror source to destination, deleting removed files"
rsync,rsync_03,rsync_03_06,goal_oriented,"I want to mirror source to destination, deleting removed files"
rsync,rsync_03,rsync_03_07,expert,"mirror source destination, deleting removed files"
rsync,rsync_03,rsync_03_08,detailed,"I have data that I need to process: mirror source to destination, deleting removed files"
rsync,rsync_03,rsync_03_09,informal,"Hey, can you help me mirror source to destination, deleting removed files?"
rsync,rsync_03,rsync_03_10,alternative,"Output destination, deleting removed files by performing: mirror source"
rsync,rsync_04,rsync_04_01,original,sync from remote server to local directory
rsync,rsync_04,rsync_04_02,beginner,How do I sync from remote server to local directory?
rsync,rsync_04,rsync_04_03,student,I need to sync from remote server to local directory
rsync,rsync_04,rsync_04_04,polite,Please sync from remote server to local directory
rsync,rsync_04,rsync_04_05,sysadmin,Use rsync to sync from remote server to local directory
rsync,rsync_04,rsync_04_06,goal_oriented,I want to sync from remote server to local directory
rsync,rsync_04,rsync_04_07,expert,sync remote server local directory
rsync,rsync_04,rsync_04_08,detailed,I have data that I need to process: sync from remote server to local directory
rsync,rsync_04,rsync_04_09,informal,"Hey, can you help me sync from remote server to local directory?"
rsync,rsync_04,rsync_04_10,alternative,Output local directory by performing: sync from remote server
rsync,rsync_05,rsync_05_01,original,resume a large interrupted transfer
rsync,rsync_05,rsync_05_02,beginner,How do I resume a large interrupted transfer?
rsync,rsync_05,rsync_05_03,student,I need to resume a large interrupted transfer
rsync,rsync_05,rsync_05_04,polite,Please resume a large interrupted transfer
rsync,rsync_05,rsync_05_05,sysadmin,Use rsync to resume a large interrupted transfer
rsync,rsync_05,rsync_05_06,goal_oriented,I want to resume a large interrupted transfer
rsync,rsync_05,rsync_05_07,expert,resume large interrupted transfer
rsync,rsync_05,rsync_05_08,detailed,I have data that I need to process: resume a large interrupted transfer
rsync,rsync_05,rsync_05_09,informal,"Hey, can you help me resume a large interrupted transfer?"
rsync,rsync_05,rsync_05_10,alternative,Perform: resume a large interrupted transfer
rsync,rsync_06,rsync_06_01,original,sync excluding specific directories and patterns
rsync,rsync_06,rsync_06_02,beginner,How do I sync excluding specific directories and patterns?
rsync,rsync_06,rsync_06_03,student,I need to sync excluding specific directories and patterns
rsync,rsync_06,rsync_06_04,polite,Please sync excluding specific directories and patterns
rsync,rsync_06,rsync_06_05,sysadmin,Use rsync to sync excluding specific directories and patterns
rsync,rsync_06,rsync_06_06,goal_oriented,I want to sync excluding specific directories and patterns
rsync,rsync_06,rsync_06_07,expert,sync excluding specific directories patterns
rsync,rsync_06,rsync_06_08,detailed,I have data that I need to process: sync excluding specific directories and patterns
rsync,rsync_06,rsync_06_09,informal,"Hey, can you help me sync excluding specific directories and patterns?"
rsync,rsync_06,rsync_06_10,alternative,Patterns after sync excluding specific directories
rsync,rsync_07,rsync_07_01,original,sync using a non-standard SSH port
rsync,rsync_07,rsync_07_02,beginner,How do I sync using a non-standard SSH port?
rsync,rsync_07,rsync_07_03,student,I need to sync using a non-standard SSH port
rsync,rsync_07,rsync_07_04,polite,Please sync using a non-standard SSH port
rsync,rsync_07,rsync_07_05,sysadmin,Use rsync to sync using a non-standard SSH port
rsync,rsync_07,rsync_07_06,goal_oriented,I want to sync using a non-standard SSH port
rsync,rsync_07,rsync_07_07,expert,sync non-standard SSH port
rsync,rsync_07,rsync_07_08,detailed,"I have data that I need to process: sync using a non-standard SSH port, utilizing multiple CPU threads for speed"
rsync,rsync_07,rsync_07_09,informal,"Hey, can you help me sync using a non-standard SSH port?"
rsync,rsync_07,rsync_07_10,alternative,Perform: sync using a non-standard SSH port
rsync,rsync_08,rsync_08_01,original,show total transfer progress instead of per-file progress
rsync,rsync_08,rsync_08_02,beginner,How do I show total transfer progress instead of per-file progress?
rsync,rsync_08,rsync_08_03,student,I need to show total transfer progress instead of per-file progress
rsync,rsync_08,rsync_08_04,polite,Please show total transfer progress instead of per-file progress
rsync,rsync_08,rsync_08_05,sysadmin,Use rsync to show total transfer progress instead of per-file progress
rsync,rsync_08,rsync_08_06,goal_oriented,I want to show total transfer progress instead of per-file progress
rsync,rsync_08,rsync_08_07,expert,show total transfer progress instead of per-file progress
rsync,rsync_08,rsync_08_08,detailed,I have data that I need to process: show total transfer progress instead of per-file progress
rsync,rsync_08,rsync_08_09,informal,"Hey, can you help me show total transfer progress instead of per-file progress?"
rsync,rsync_08,rsync_08_10,alternative,Perform: show total transfer progress instead of per-file progress
rsync,rsync_09,rsync_09_01,original,copy files preserving hard links
rsync,rsync_09,rsync_09_02,beginner,How do I copy files preserving hard links?
rsync,rsync_09,rsync_09_03,student,I need to copy files preserving hard links
rsync,rsync_09,rsync_09_04,polite,Please copy files preserving hard links
rsync,rsync_09,rsync_09_05,sysadmin,Use rsync to copy files preserving hard links
rsync,rsync_09,rsync_09_06,goal_oriented,I want to copy files preserving hard links
rsync,rsync_09,rsync_09_07,expert,copy files preserving hard links
rsync,rsync_09,rsync_09_08,detailed,I have data that I need to process: copy files preserving hard links
rsync,rsync_09,rsync_09_09,informal,"Hey, can you help me copy files preserving hard links?"
rsync,rsync_09,rsync_09_10,alternative,Perform: copy files preserving hard links
rsync,rsync_10,rsync_10_01,original,sync only files newer than a reference file
rsync,rsync_10,rsync_10_02,beginner,How do I sync only files newer than a reference file?
rsync,rsync_10,rsync_10_03,student,I need to sync only files newer than a reference file
rsync,rsync_10,rsync_10_04,polite,Please sync only files newer than a reference file
rsync,rsync_10,rsync_10_05,sysadmin,Use rsync to sync only files newer than a reference file
rsync,rsync_10,rsync_10_06,goal_oriented,I want to sync only files newer than a reference file
rsync,rsync_10,rsync_10_07,expert,sync only files newer than reference file
rsync,rsync_10,rsync_10_08,detailed,I have data that I need to process: sync only files newer than a reference file
rsync,rsync_10,rsync_10_09,informal,"Hey, can you help me sync only files newer than a reference file?"
rsync,rsync_10,rsync_10_10,alternative,Perform: sync only files newer than a reference file
salmon,salmon_01,salmon_01_01,original,build a Salmon transcriptome index
salmon,salmon_01,salmon_01_02,beginner,How do I build a Salmon transcriptome index?
salmon,salmon_01,salmon_01_03,student,I need to build a Salmon transcriptome index
salmon,salmon_01,salmon_01_04,polite,Please build a Salmon transcriptome index
salmon,salmon_01,salmon_01_05,sysadmin,Use salmon to build a Salmon transcriptome index
salmon,salmon_01,salmon_01_06,goal_oriented,I want to build a Salmon transcriptome index
salmon,salmon_01,salmon_01_07,expert,build Salmon transcriptome index
salmon,salmon_01,salmon_01_08,detailed,"I have data that I need to process: build a Salmon transcriptome index, utilizing multiple CPU threads for speed"
salmon,salmon_01,salmon_01_09,informal,"Hey, can you help me build a Salmon transcriptome index?"
salmon,salmon_01,salmon_01_10,alternative,Perform: build a Salmon transcriptome index
salmon,salmon_02,salmon_02_01,original,quantify paired-end RNA-seq reads with automatic library type detection
salmon,salmon_02,salmon_02_02,beginner,How do I quantify paired-end RNA-seq reads with automatic library type detection?
salmon,salmon_02,salmon_02_03,student,I need to quantify paired-end RNA-seq reads with automatic library type detection
salmon,salmon_02,salmon_02_04,polite,Please quantify paired-end RNA-seq reads with automatic library type detection
salmon,salmon_02,salmon_02_05,sysadmin,Use salmon to quantify paired-end RNA-seq reads with automatic library type detection
salmon,salmon_02,salmon_02_06,goal_oriented,I want to quantify paired-end RNA-seq reads with automatic library type detection
salmon,salmon_02,salmon_02_07,expert,quantify paired-end RNA-seq reads automatic library type detection
salmon,salmon_02,salmon_02_08,detailed,"I have data that I need to process: quantify paired-end RNA-seq reads with automatic library type detection, utilizing multiple CPU threads for speed, saving the result to a specified output file"
salmon,salmon_02,salmon_02_09,informal,"Hey, can you help me quantify paired-end RNA-seq reads with automatic library type detection?"
salmon,salmon_02,salmon_02_10,alternative,"With automatic library type detection, quantify paired-end RNA-seq reads"
salmon,salmon_03,salmon_03_01,original,quantify single-end RNA-seq reads
salmon,salmon_03,salmon_03_02,beginner,How do I quantify single-end RNA-seq reads?
salmon,salmon_03,salmon_03_03,student,I need to quantify single-end RNA-seq reads
salmon,salmon_03,salmon_03_04,polite,Please quantify single-end RNA-seq reads
salmon,salmon_03,salmon_03_05,sysadmin,Use salmon to quantify single-end RNA-seq reads
salmon,salmon_03,salmon_03_06,goal_oriented,I want to quantify single-end RNA-seq reads
salmon,salmon_03,salmon_03_07,expert,quantify single-end RNA-seq reads
salmon,salmon_03,salmon_03_08,detailed,"I have data that I need to process: quantify single-end RNA-seq reads, utilizing multiple CPU threads for speed, saving the result to a specified output file"
salmon,salmon_03,salmon_03_09,informal,"Hey, can you help me quantify single-end RNA-seq reads?"
salmon,salmon_03,salmon_03_10,alternative,Perform: quantify single-end RNA-seq reads
salmon,salmon_04,salmon_04_01,original,build decoy-aware salmon index for more accurate quantification
salmon,salmon_04,salmon_04_02,beginner,How do I build decoy-aware salmon index for more accurate quantification?
salmon,salmon_04,salmon_04_03,student,I need to build decoy-aware salmon index for more accurate quantification
salmon,salmon_04,salmon_04_04,polite,Please build decoy-aware salmon index for more accurate quantification
salmon,salmon_04,salmon_04_05,sysadmin,Use salmon to build decoy-aware salmon index for more accurate quantification
salmon,salmon_04,salmon_04_06,goal_oriented,I want to build decoy-aware salmon index for more accurate quantification
salmon,salmon_04,salmon_04_07,expert,build decoy-aware salmon index more accurate quantification
salmon,salmon_04,salmon_04_08,detailed,"I have data that I need to process: build decoy-aware salmon index for more accurate quantification, utilizing multiple CPU threads for speed"
salmon,salmon_04,salmon_04_09,informal,"Hey, can you help me build decoy-aware salmon index for more accurate quantification?"
salmon,salmon_04,salmon_04_10,alternative,Perform: build decoy-aware salmon index for more accurate quantification
salmon,salmon_05,salmon_05_01,original,quantify bulk RNA-seq with strand-specific reverse library
salmon,salmon_05,salmon_05_02,beginner,How do I quantify bulk RNA-seq with strand-specific reverse library?
salmon,salmon_05,salmon_05_03,student,I need to quantify bulk RNA-seq with strand-specific reverse library
salmon,salmon_05,salmon_05_04,polite,Please quantify bulk RNA-seq with strand-specific reverse library
salmon,salmon_05,salmon_05_05,sysadmin,Use salmon to quantify bulk RNA-seq with strand-specific reverse library
salmon,salmon_05,salmon_05_06,goal_oriented,I want to quantify bulk RNA-seq with strand-specific reverse library
salmon,salmon_05,salmon_05_07,expert,quantify bulk RNA-seq strand-specific reverse library
salmon,salmon_05,salmon_05_08,detailed,"I have data that I need to process: quantify bulk RNA-seq with strand-specific reverse library, utilizing multiple CPU threads for speed, saving the result to a specified output file"
salmon,salmon_05,salmon_05_09,informal,"Hey, can you help me quantify bulk RNA-seq with strand-specific reverse library?"
salmon,salmon_05,salmon_05_10,alternative,"With strand-specific reverse library, quantify bulk RNA-seq"
salmon,salmon_06,salmon_06_01,original,build a Salmon transcriptome index with verbose output
salmon,salmon_06,salmon_06_02,beginner,How do I build a Salmon transcriptome index with verbose output?
salmon,salmon_06,salmon_06_03,student,I need to build a Salmon transcriptome index with verbose output
salmon,salmon_06,salmon_06_04,polite,Please build a Salmon transcriptome index with verbose output
salmon,salmon_06,salmon_06_05,sysadmin,Use salmon to build a Salmon transcriptome index with verbose output
salmon,salmon_06,salmon_06_06,goal_oriented,I want to build a Salmon transcriptome index with verbose output
salmon,salmon_06,salmon_06_07,expert,build Salmon transcriptome index verbose output
salmon,salmon_06,salmon_06_08,detailed,"I have data that I need to process: build a Salmon transcriptome index with verbose output, utilizing multiple CPU threads for speed"
salmon,salmon_06,salmon_06_09,informal,"Hey, can you help me build a Salmon transcriptome index with verbose output?"
salmon,salmon_06,salmon_06_10,alternative,"With verbose output, build a Salmon transcriptome index"
salmon,salmon_07,salmon_07_01,original,quantify paired-end RNA-seq reads with automatic library type detection using multiple threads
salmon,salmon_07,salmon_07_02,beginner,How do I quantify paired-end RNA-seq reads with automatic library type detection using multiple threads?
salmon,salmon_07,salmon_07_03,student,I need to quantify paired-end RNA-seq reads with automatic library type detection using multiple threads
salmon,salmon_07,salmon_07_04,polite,Please quantify paired-end RNA-seq reads with automatic library type detection using multiple threads
salmon,salmon_07,salmon_07_05,sysadmin,Use salmon to quantify paired-end RNA-seq reads with automatic library type detection using multiple threads
salmon,salmon_07,salmon_07_06,goal_oriented,I want to quantify paired-end RNA-seq reads with automatic library type detection using multiple threads
salmon,salmon_07,salmon_07_07,expert,quantify paired-end RNA-seq reads automatic library type detection multiple threads
salmon,salmon_07,salmon_07_08,detailed,"I have data that I need to process: quantify paired-end RNA-seq reads with automatic library type detection using multiple threads, utilizing multiple CPU threads for speed, saving the result to a specified output file"
salmon,salmon_07,salmon_07_09,informal,"Hey, can you help me quantify paired-end RNA-seq reads with automatic library type detection using multiple threads?"
salmon,salmon_07,salmon_07_10,alternative,"With automatic library type detection using multiple threads, quantify paired-end RNA-seq reads"
salmon,salmon_08,salmon_08_01,original,quantify single-end RNA-seq reads and write output to a file
salmon,salmon_08,salmon_08_02,beginner,How do I quantify single-end RNA-seq reads and write output to a file?
salmon,salmon_08,salmon_08_03,student,I need to quantify single-end RNA-seq reads and write output to a file
salmon,salmon_08,salmon_08_04,polite,Please quantify single-end RNA-seq reads and write output to a file
salmon,salmon_08,salmon_08_05,sysadmin,Use salmon to quantify single-end RNA-seq reads and write output to a file
salmon,salmon_08,salmon_08_06,goal_oriented,I want to quantify single-end RNA-seq reads and write output to a file
salmon,salmon_08,salmon_08_07,expert,quantify single-end RNA-seq reads write output file
salmon,salmon_08,salmon_08_08,detailed,"I have data that I need to process: quantify single-end RNA-seq reads and write output to a file, utilizing multiple CPU threads for speed, saving the result to a specified output file"
salmon,salmon_08,salmon_08_09,informal,"Hey, can you help me quantify single-end RNA-seq reads and write output to a file?"
salmon,salmon_08,salmon_08_10,alternative,Write output to a file after quantify single-end RNA-seq reads
salmon,salmon_09,salmon_09_01,original,build decoy-aware salmon index for more accurate quantification in quiet mode
salmon,salmon_09,salmon_09_02,beginner,How do I build decoy-aware salmon index for more accurate quantification in quiet mode?
salmon,salmon_09,salmon_09_03,student,I need to build decoy-aware salmon index for more accurate quantification in quiet mode
salmon,salmon_09,salmon_09_04,polite,Please build decoy-aware salmon index for more accurate quantification in quiet mode
salmon,salmon_09,salmon_09_05,sysadmin,Use salmon to build decoy-aware salmon index for more accurate quantification in quiet mode
salmon,salmon_09,salmon_09_06,goal_oriented,I want to build decoy-aware salmon index for more accurate quantification in quiet mode
salmon,salmon_09,salmon_09_07,expert,build decoy-aware salmon index more accurate quantification quiet mode
salmon,salmon_09,salmon_09_08,detailed,"I have data that I need to process: build decoy-aware salmon index for more accurate quantification in quiet mode, utilizing multiple CPU threads for speed"
salmon,salmon_09,salmon_09_09,informal,"Hey, can you help me build decoy-aware salmon index for more accurate quantification in quiet mode?"
salmon,salmon_09,salmon_09_10,alternative,Perform: build decoy-aware salmon index for more accurate quantification in quiet mode
salmon,salmon_10,salmon_10_01,original,quantify bulk RNA-seq with strand-specific reverse library with default parameters
salmon,salmon_10,salmon_10_02,beginner,How do I quantify bulk RNA-seq with strand-specific reverse library with default parameters?
salmon,salmon_10,salmon_10_03,student,I need to quantify bulk RNA-seq with strand-specific reverse library with default parameters
salmon,salmon_10,salmon_10_04,polite,Please quantify bulk RNA-seq with strand-specific reverse library with default parameters
salmon,salmon_10,salmon_10_05,sysadmin,Use salmon to quantify bulk RNA-seq with strand-specific reverse library with default parameters
salmon,salmon_10,salmon_10_06,goal_oriented,I want to quantify bulk RNA-seq with strand-specific reverse library with default parameters
salmon,salmon_10,salmon_10_07,expert,quantify bulk RNA-seq strand-specific reverse library default parameters
salmon,salmon_10,salmon_10_08,detailed,"I have data that I need to process: quantify bulk RNA-seq with strand-specific reverse library with default parameters, utilizing multiple CPU threads for speed, saving the result to a specified output file"
salmon,salmon_10,salmon_10_09,informal,"Hey, can you help me quantify bulk RNA-seq with strand-specific reverse library with default parameters?"
salmon,salmon_10,salmon_10_10,alternative,"With strand-specific reverse library with default parameters, quantify bulk RNA-seq"
samtools,samtools_01,samtools_01_01,original,sort a BAM file by genomic coordinates
samtools,samtools_01,samtools_01_02,beginner,How do I sort a BAM file by genomic coordinates?
samtools,samtools_01,samtools_01_03,student,I need to sort a BAM file by genomic coordinates
samtools,samtools_01,samtools_01_04,polite,Please sort a BAM file by genomic coordinates
samtools,samtools_01,samtools_01_05,sysadmin,Use samtools to sort a BAM file by genomic coordinates
samtools,samtools_01,samtools_01_06,goal_oriented,I want to sort a BAM file by genomic coordinates
samtools,samtools_01,samtools_01_07,expert,sort BAM file by genomic coordinates
samtools,samtools_01,samtools_01_08,detailed,"I have data that I need to process: sort a BAM file by genomic coordinates, utilizing multiple CPU threads for speed, saving the result to a specified output file"
samtools,samtools_01,samtools_01_09,informal,"Hey, can you help me sort a BAM file by genomic coordinates?"
samtools,samtools_01,samtools_01_10,alternative,Perform: sort a BAM file by genomic coordinates
samtools,samtools_02,samtools_02_01,original,create an index for a sorted BAM file
samtools,samtools_02,samtools_02_02,beginner,How do I create an index for a sorted BAM file?
samtools,samtools_02,samtools_02_03,student,I need to create an index for a sorted BAM file
samtools,samtools_02,samtools_02_04,polite,Please create an index for a sorted BAM file
samtools,samtools_02,samtools_02_05,sysadmin,Use samtools to create an index for a sorted BAM file
samtools,samtools_02,samtools_02_06,goal_oriented,I want to create an index for a sorted BAM file
samtools,samtools_02,samtools_02_07,expert,create index sorted BAM file
samtools,samtools_02,samtools_02_08,detailed,I have data that I need to process: create an index for a sorted BAM file
samtools,samtools_02,samtools_02_09,informal,"Hey, can you help me create an index for a sorted BAM file?"
samtools,samtools_02,samtools_02_10,alternative,Perform: create an index for a sorted BAM file
samtools,samtools_03,samtools_03_01,original,filter to keep only properly paired primary alignments
samtools,samtools_03,samtools_03_02,beginner,How do I filter to keep only properly paired primary alignments?
samtools,samtools_03,samtools_03_03,student,I need to filter to keep only properly paired primary alignments
samtools,samtools_03,samtools_03_04,polite,Please filter to keep only properly paired primary alignments
samtools,samtools_03,samtools_03_05,sysadmin,Use samtools to filter to keep only properly paired primary alignments
samtools,samtools_03,samtools_03_06,goal_oriented,I want to filter to keep only properly paired primary alignments
samtools,samtools_03,samtools_03_07,expert,filter keep only properly paired primary alignments
samtools,samtools_03,samtools_03_08,detailed,"I have data that I need to process: filter to keep only properly paired primary alignments, saving the result to a specified output file"
samtools,samtools_03,samtools_03_09,informal,"Hey, can you help me filter to keep only properly paired primary alignments?"
samtools,samtools_03,samtools_03_10,alternative,Output keep only properly paired primary alignments by performing: filter
samtools,samtools_04,samtools_04_01,original,"get alignment statistics (mapped, unmapped, duplicates)"
samtools,samtools_04,samtools_04_02,beginner,"How do I get alignment statistics (mapped, unmapped, duplicates)?"
samtools,samtools_04,samtools_04_03,student,"I need to get alignment statistics (mapped, unmapped, duplicates)"
samtools,samtools_04,samtools_04_04,polite,"Please get alignment statistics (mapped, unmapped, duplicates)"
samtools,samtools_04,samtools_04_05,sysadmin,"Use samtools to get alignment statistics (mapped, unmapped, duplicates)"
samtools,samtools_04,samtools_04_06,goal_oriented,"I want to get alignment statistics (mapped, unmapped, duplicates)"
samtools,samtools_04,samtools_04_07,expert,"get alignment statistics (mapped, unmapped, duplicates)"
samtools,samtools_04,samtools_04_08,detailed,"I have data that I need to process: get alignment statistics (mapped, unmapped, duplicates)"
samtools,samtools_04,samtools_04_09,informal,"Hey, can you help me get alignment statistics (mapped, unmapped, duplicates)?"
samtools,samtools_04,samtools_04_10,alternative,"Perform: get alignment statistics (mapped, unmapped, duplicates)"
samtools,samtools_05,samtools_05_01,original,convert BAM to FASTQ for paired-end reads
samtools,samtools_05,samtools_05_02,beginner,How do I convert BAM to FASTQ for paired-end reads?
samtools,samtools_05,samtools_05_03,student,I need to convert BAM to FASTQ for paired-end reads
samtools,samtools_05,samtools_05_04,polite,Please convert BAM to FASTQ for paired-end reads
samtools,samtools_05,samtools_05_05,sysadmin,Use samtools to convert BAM to FASTQ for paired-end reads
samtools,samtools_05,samtools_05_06,goal_oriented,I want to convert BAM to FASTQ for paired-end reads
samtools,samtools_05,samtools_05_07,expert,convert BAM FASTQ paired-end reads
samtools,samtools_05,samtools_05_08,detailed,"I have data that I need to process: convert BAM to FASTQ for paired-end reads, utilizing multiple CPU threads for speed"
samtools,samtools_05,samtools_05_09,informal,"Hey, can you help me convert BAM to FASTQ for paired-end reads?"
samtools,samtools_05,samtools_05_10,alternative,Output FASTQ for paired-end reads by performing: convert BAM
samtools,samtools_06,samtools_06_01,original,extract reads mapping to chromosome 1 between 100000 and 200000
samtools,samtools_06,samtools_06_02,beginner,How do I extract reads mapping to chromosome 1 between 100000 and 200000?
samtools,samtools_06,samtools_06_03,student,I need to extract reads mapping to chromosome 1 between 100000 and 200000
samtools,samtools_06,samtools_06_04,polite,Please extract reads mapping to chromosome 1 between 100000 and 200000
samtools,samtools_06,samtools_06_05,sysadmin,Use samtools to extract reads mapping to chromosome 1 between 100000 and 200000
samtools,samtools_06,samtools_06_06,goal_oriented,I want to extract reads mapping to chromosome 1 between 100000 and 200000
samtools,samtools_06,samtools_06_07,expert,extract reads mapping chromosome 1 between 100000 200000
samtools,samtools_06,samtools_06_08,detailed,"I have data that I need to process: extract reads mapping to chromosome 1 between 100000 and 200000, saving the result to a specified output file"
samtools,samtools_06,samtools_06_09,informal,"Hey, can you help me extract reads mapping to chromosome 1 between 100000 and 200000?"
samtools,samtools_06,samtools_06_10,alternative,200000 after extract reads mapping to chromosome 1 between 100000
samtools,samtools_07,samtools_07_01,original,mark PCR duplicates
samtools,samtools_07,samtools_07_02,beginner,How do I mark PCR duplicates?
samtools,samtools_07,samtools_07_03,student,I need to mark PCR duplicates
samtools,samtools_07,samtools_07_04,polite,Please mark PCR duplicates
samtools,samtools_07,samtools_07_05,sysadmin,Use samtools to mark PCR duplicates
samtools,samtools_07,samtools_07_06,goal_oriented,I want to mark PCR duplicates
samtools,samtools_07,samtools_07_07,expert,mark PCR duplicates
samtools,samtools_07,samtools_07_08,detailed,"I have data that I need to process: mark PCR duplicates, utilizing multiple CPU threads for speed"
samtools,samtools_07,samtools_07_09,informal,"Hey, can you help me mark PCR duplicates?"
samtools,samtools_07,samtools_07_10,alternative,Perform: mark PCR duplicates
samtools,samtools_08,samtools_08_01,original,merge multiple BAM files into one
samtools,samtools_08,samtools_08_02,beginner,How do I merge multiple BAM files into one?
samtools,samtools_08,samtools_08_03,student,I need to merge multiple BAM files into one
samtools,samtools_08,samtools_08_04,polite,Please merge multiple BAM files into one
samtools,samtools_08,samtools_08_05,sysadmin,Use samtools to merge multiple BAM files into one
samtools,samtools_08,samtools_08_06,goal_oriented,I want to merge multiple BAM files into one
samtools,samtools_08,samtools_08_07,expert,merge multiple BAM files one
samtools,samtools_08,samtools_08_08,detailed,"I have data that I need to process: merge multiple BAM files into one, utilizing multiple CPU threads for speed"
samtools,samtools_08,samtools_08_09,informal,"Hey, can you help me merge multiple BAM files into one?"
samtools,samtools_08,samtools_08_10,alternative,Perform: merge multiple BAM files into one
samtools,samtools_09,samtools_09_01,original,compute per-base depth of coverage
samtools,samtools_09,samtools_09_02,beginner,How do I compute per-base depth of coverage?
samtools,samtools_09,samtools_09_03,student,I need to compute per-base depth of coverage
samtools,samtools_09,samtools_09_04,polite,Please compute per-base depth of coverage
samtools,samtools_09,samtools_09_05,sysadmin,Use samtools to compute per-base depth of coverage
samtools,samtools_09,samtools_09_06,goal_oriented,I want to compute per-base depth of coverage
samtools,samtools_09,samtools_09_07,expert,compute per-base depth of coverage
samtools,samtools_09,samtools_09_08,detailed,"I have data that I need to process: compute per-base depth of coverage, saving the result to a specified output file"
samtools,samtools_09,samtools_09_09,informal,"Hey, can you help me compute per-base depth of coverage?"
samtools,samtools_09,samtools_09_10,alternative,Perform: compute per-base depth of coverage
samtools,samtools_10,samtools_10_01,original,view the BAM header
samtools,samtools_10,samtools_10_02,beginner,How do I view the BAM header?
samtools,samtools_10,samtools_10_03,student,I need to view the BAM header
samtools,samtools_10,samtools_10_04,polite,Please view the BAM header
samtools,samtools_10,samtools_10_05,sysadmin,Use samtools to view the BAM header
samtools,samtools_10,samtools_10_06,goal_oriented,I want to view the BAM header
samtools,samtools_10,samtools_10_07,expert,view BAM header
samtools,samtools_10,samtools_10_08,detailed,I have data that I need to process: view the BAM header
samtools,samtools_10,samtools_10_09,informal,"Hey, can you help me view the BAM header?"
samtools,samtools_10,samtools_10_10,alternative,Perform: view the BAM header
sed,sed_01,sed_01_01,original,replace all occurrences of a word in a file in-place
sed,sed_01,sed_01_02,beginner,How do I replace all occurrences of a word in a file in-place?
sed,sed_01,sed_01_03,student,I need to replace all occurrences of a word in a file in-place
sed,sed_01,sed_01_04,polite,Please replace all occurrences of a word in a file in-place
sed,sed_01,sed_01_05,sysadmin,Use sed to replace all occurrences of a word in a file in-place
sed,sed_01,sed_01_06,goal_oriented,I want to replace all occurrences of a word in a file in-place
sed,sed_01,sed_01_07,expert,replace all occurrences of word file in-place
sed,sed_01,sed_01_08,detailed,I have data that I need to process: replace all occurrences of a word in a file in-place
sed,sed_01,sed_01_09,informal,"Hey, can you help me replace all occurrences of a word in a file in-place?"
sed,sed_01,sed_01_10,alternative,Perform: replace all occurrences of a word in a file in-place
sed,sed_02,sed_02_01,original,replace text in-place and keep a backup
sed,sed_02,sed_02_02,beginner,How do I replace text in-place and keep a backup?
sed,sed_02,sed_02_03,student,I need to replace text in-place and keep a backup
sed,sed_02,sed_02_04,polite,Please replace text in-place and keep a backup
sed,sed_02,sed_02_05,sysadmin,Use sed to replace text in-place and keep a backup
sed,sed_02,sed_02_06,goal_oriented,I want to replace text in-place and keep a backup
sed,sed_02,sed_02_07,expert,replace text in-place keep backup
sed,sed_02,sed_02_08,detailed,I have data that I need to process: replace text in-place and keep a backup
sed,sed_02,sed_02_09,informal,"Hey, can you help me replace text in-place and keep a backup?"
sed,sed_02,sed_02_10,alternative,Keep a backup after replace text in-place
sed,sed_03,sed_03_01,original,delete all blank lines from a file
sed,sed_03,sed_03_02,beginner,How do I delete all blank lines from a file?
sed,sed_03,sed_03_03,student,I need to delete all blank lines from a file
sed,sed_03,sed_03_04,polite,Please delete all blank lines from a file
sed,sed_03,sed_03_05,sysadmin,Use sed to delete all blank lines from a file
sed,sed_03,sed_03_06,goal_oriented,I want to delete all blank lines from a file
sed,sed_03,sed_03_07,expert,delete all blank lines file
sed,sed_03,sed_03_08,detailed,I have data that I need to process: delete all blank lines from a file
sed,sed_03,sed_03_09,informal,"Hey, can you help me delete all blank lines from a file?"
sed,sed_03,sed_03_10,alternative,Perform: delete all blank lines from a file
sed,sed_04,sed_04_01,original,delete lines containing a pattern
sed,sed_04,sed_04_02,beginner,How do I delete lines containing a pattern?
sed,sed_04,sed_04_03,student,I need to delete lines containing a pattern
sed,sed_04,sed_04_04,polite,Please delete lines containing a pattern
sed,sed_04,sed_04_05,sysadmin,Use sed to delete lines containing a pattern
sed,sed_04,sed_04_06,goal_oriented,I want to delete lines containing a pattern
sed,sed_04,sed_04_07,expert,delete lines containing pattern
sed,sed_04,sed_04_08,detailed,I have data that I need to process: delete lines containing a pattern
sed,sed_04,sed_04_09,informal,"Hey, can you help me delete lines containing a pattern?"
sed,sed_04,sed_04_10,alternative,Perform: delete lines containing a pattern
sed,sed_05,sed_05_01,original,print only lines matching a pattern (like grep)
sed,sed_05,sed_05_02,beginner,How do I print only lines matching a pattern (like grep)?
sed,sed_05,sed_05_03,student,I need to print only lines matching a pattern (like grep)
sed,sed_05,sed_05_04,polite,Please print only lines matching a pattern (like grep)
sed,sed_05,sed_05_05,sysadmin,Use sed to print only lines matching a pattern (like grep)
sed,sed_05,sed_05_06,goal_oriented,I want to print only lines matching a pattern (like grep)
sed,sed_05,sed_05_07,expert,print only lines matching pattern (like grep)
sed,sed_05,sed_05_08,detailed,I have data that I need to process: print only lines matching a pattern (like grep)
sed,sed_05,sed_05_09,informal,"Hey, can you help me print only lines matching a pattern (like grep)?"
sed,sed_05,sed_05_10,alternative,Perform: print only lines matching a pattern (like grep)
sed,sed_06,sed_06_01,original,extract and reformat date using capture groups
sed,sed_06,sed_06_02,beginner,How do I extract and reformat date using capture groups?
sed,sed_06,sed_06_03,student,I need to extract and reformat date using capture groups
sed,sed_06,sed_06_04,polite,Please extract and reformat date using capture groups
sed,sed_06,sed_06_05,sysadmin,Use sed to extract and reformat date using capture groups
sed,sed_06,sed_06_06,goal_oriented,I want to extract and reformat date using capture groups
sed,sed_06,sed_06_07,expert,extract reformat date capture groups
sed,sed_06,sed_06_08,detailed,I have data that I need to process: extract and reformat date using capture groups
sed,sed_06,sed_06_09,informal,"Hey, can you help me extract and reformat date using capture groups?"
sed,sed_06,sed_06_10,alternative,Reformat date using capture groups after extract
sed,sed_07,sed_07_01,original,add a prefix to every line in a file
sed,sed_07,sed_07_02,beginner,How do I add a prefix to every line in a file?
sed,sed_07,sed_07_03,student,I need to add a prefix to every line in a file
sed,sed_07,sed_07_04,polite,Please add a prefix to every line in a file
sed,sed_07,sed_07_05,sysadmin,Use sed to add a prefix to every line in a file
sed,sed_07,sed_07_06,goal_oriented,I want to add a prefix to every line in a file
sed,sed_07,sed_07_07,expert,add prefix every line file
sed,sed_07,sed_07_08,detailed,I have data that I need to process: add a prefix to every line in a file
sed,sed_07,sed_07_09,informal,"Hey, can you help me add a prefix to every line in a file?"
sed,sed_07,sed_07_10,alternative,Output every line in a file by performing: add a prefix
sed,sed_08,sed_08_01,original,remove trailing whitespace from all lines
sed,sed_08,sed_08_02,beginner,How do I remove trailing whitespace from all lines?
sed,sed_08,sed_08_03,student,I need to remove trailing whitespace from all lines
sed,sed_08,sed_08_04,polite,Please remove trailing whitespace from all lines
sed,sed_08,sed_08_05,sysadmin,Use sed to remove trailing whitespace from all lines
sed,sed_08,sed_08_06,goal_oriented,I want to remove trailing whitespace from all lines
sed,sed_08,sed_08_07,expert,remove trailing whitespace all lines
sed,sed_08,sed_08_08,detailed,I have data that I need to process: remove trailing whitespace from all lines
sed,sed_08,sed_08_09,informal,"Hey, can you help me remove trailing whitespace from all lines?"
sed,sed_08,sed_08_10,alternative,Perform: remove trailing whitespace from all lines
sed,sed_09,sed_09_01,original,replace only on a specific line number
sed,sed_09,sed_09_02,beginner,How do I replace only on a specific line number?
sed,sed_09,sed_09_03,student,I need to replace only on a specific line number
sed,sed_09,sed_09_04,polite,Please replace only on a specific line number
sed,sed_09,sed_09_05,sysadmin,Use sed to replace only on a specific line number
sed,sed_09,sed_09_06,goal_oriented,I want to replace only on a specific line number
sed,sed_09,sed_09_07,expert,replace only on specific line number
sed,sed_09,sed_09_08,detailed,I have data that I need to process: replace only on a specific line number
sed,sed_09,sed_09_09,informal,"Hey, can you help me replace only on a specific line number?"
sed,sed_09,sed_09_10,alternative,Perform: replace only on a specific line number
sed,sed_10,sed_10_01,original,insert a line after a matching pattern
sed,sed_10,sed_10_02,beginner,How do I insert a line after a matching pattern?
sed,sed_10,sed_10_03,student,I need to insert a line after a matching pattern
sed,sed_10,sed_10_04,polite,Please insert a line after a matching pattern
sed,sed_10,sed_10_05,sysadmin,Use sed to insert a line after a matching pattern
sed,sed_10,sed_10_06,goal_oriented,I want to insert a line after a matching pattern
sed,sed_10,sed_10_07,expert,insert line after matching pattern
sed,sed_10,sed_10_08,detailed,I have data that I need to process: insert a line after a matching pattern
sed,sed_10,sed_10_09,informal,"Hey, can you help me insert a line after a matching pattern?"
sed,sed_10,sed_10_10,alternative,Perform: insert a line after a matching pattern
seqkit,seqkit_01,seqkit_01_01,original,"get basic statistics of a FASTQ file (read count, total bases, average length)"
seqkit,seqkit_01,seqkit_01_02,beginner,"How do I get basic statistics of a FASTQ file (read count, total bases, average length)?"
seqkit,seqkit_01,seqkit_01_03,student,"I need to get basic statistics of a FASTQ file (read count, total bases, average length)"
seqkit,seqkit_01,seqkit_01_04,polite,"Please get basic statistics of a FASTQ file (read count, total bases, average length)"
seqkit,seqkit_01,seqkit_01_05,sysadmin,"Use seqkit to get basic statistics of a FASTQ file (read count, total bases, average length)"
seqkit,seqkit_01,seqkit_01_06,goal_oriented,"I want to get basic statistics of a FASTQ file (read count, total bases, average length)"
seqkit,seqkit_01,seqkit_01_07,expert,"get basic statistics of FASTQ file (read count, total bases, average length)"
seqkit,seqkit_01,seqkit_01_08,detailed,"I have data that I need to process: get basic statistics of a FASTQ file (read count, total bases, average length)"
seqkit,seqkit_01,seqkit_01_09,informal,"Hey, can you help me get basic statistics of a FASTQ file (read count, total bases, average length)?"
seqkit,seqkit_01,seqkit_01_10,alternative,"Perform: get basic statistics of a FASTQ file (read count, total bases, average length)"
seqkit,seqkit_02,seqkit_02_01,original,filter reads shorter than 100 bp and write to a new file
seqkit,seqkit_02,seqkit_02_02,beginner,How do I filter reads shorter than 100 bp and write to a new file?
seqkit,seqkit_02,seqkit_02_03,student,I need to filter reads shorter than 100 bp and write to a new file
seqkit,seqkit_02,seqkit_02_04,polite,Please filter reads shorter than 100 bp and write to a new file
seqkit,seqkit_02,seqkit_02_05,sysadmin,Use seqkit to filter reads shorter than 100 bp and write to a new file
seqkit,seqkit_02,seqkit_02_06,goal_oriented,I want to filter reads shorter than 100 bp and write to a new file
seqkit,seqkit_02,seqkit_02_07,expert,filter reads shorter than 100 bp write new file
seqkit,seqkit_02,seqkit_02_08,detailed,"I have data that I need to process: filter reads shorter than 100 bp and write to a new file, saving the result to a specified output file"
seqkit,seqkit_02,seqkit_02_09,informal,"Hey, can you help me filter reads shorter than 100 bp and write to a new file?"
seqkit,seqkit_02,seqkit_02_10,alternative,Write to a new file after filter reads shorter than 100 bp
seqkit,seqkit_03,seqkit_03_01,original,get the reverse complement of all sequences in a FASTA file
seqkit,seqkit_03,seqkit_03_02,beginner,How do I get the reverse complement of all sequences in a FASTA file?
seqkit,seqkit_03,seqkit_03_03,student,I need to get the reverse complement of all sequences in a FASTA file
seqkit,seqkit_03,seqkit_03_04,polite,Please get the reverse complement of all sequences in a FASTA file
seqkit,seqkit_03,seqkit_03_05,sysadmin,Use seqkit to get the reverse complement of all sequences in a FASTA file
seqkit,seqkit_03,seqkit_03_06,goal_oriented,I want to get the reverse complement of all sequences in a FASTA file
seqkit,seqkit_03,seqkit_03_07,expert,get reverse complement of all sequences FASTA file
seqkit,seqkit_03,seqkit_03_08,detailed,"I have data that I need to process: get the reverse complement of all sequences in a FASTA file, utilizing multiple CPU threads for speed, saving the result to a specified output file"
seqkit,seqkit_03,seqkit_03_09,informal,"Hey, can you help me get the reverse complement of all sequences in a FASTA file?"
seqkit,seqkit_03,seqkit_03_10,alternative,Perform: get the reverse complement of all sequences in a FASTA file
seqkit,seqkit_04,seqkit_04_01,original,extract sequences by name from a list file
seqkit,seqkit_04,seqkit_04_02,beginner,How do I extract sequences by name from a list file?
seqkit,seqkit_04,seqkit_04_03,student,I need to extract sequences by name from a list file
seqkit,seqkit_04,seqkit_04_04,polite,Please extract sequences by name from a list file
seqkit,seqkit_04,seqkit_04_05,sysadmin,Use seqkit to extract sequences by name from a list file
seqkit,seqkit_04,seqkit_04_06,goal_oriented,I want to extract sequences by name from a list file
seqkit,seqkit_04,seqkit_04_07,expert,extract sequences by name list file
seqkit,seqkit_04,seqkit_04_08,detailed,"I have data that I need to process: extract sequences by name from a list file, saving the result to a specified output file"
seqkit,seqkit_04,seqkit_04_09,informal,"Hey, can you help me extract sequences by name from a list file?"
seqkit,seqkit_04,seqkit_04_10,alternative,Perform: extract sequences by name from a list file
seqkit,seqkit_05,seqkit_05_01,original,randomly sample 10000 reads from a large FASTQ file
seqkit,seqkit_05,seqkit_05_02,beginner,How do I randomly sample 10000 reads from a large FASTQ file?
seqkit,seqkit_05,seqkit_05_03,student,I need to randomly sample 10000 reads from a large FASTQ file
seqkit,seqkit_05,seqkit_05_04,polite,Please randomly sample 10000 reads from a large FASTQ file
seqkit,seqkit_05,seqkit_05_05,sysadmin,Use seqkit to randomly sample 10000 reads from a large FASTQ file
seqkit,seqkit_05,seqkit_05_06,goal_oriented,I want to randomly sample 10000 reads from a large FASTQ file
seqkit,seqkit_05,seqkit_05_07,expert,randomly sample 10000 reads large FASTQ file
seqkit,seqkit_05,seqkit_05_08,detailed,"I have data that I need to process: randomly sample 10000 reads from a large FASTQ file, saving the result to a specified output file"
seqkit,seqkit_05,seqkit_05_09,informal,"Hey, can you help me randomly sample 10000 reads from a large FASTQ file?"
seqkit,seqkit_05,seqkit_05_10,alternative,Perform: randomly sample 10000 reads from a large FASTQ file
seqkit,seqkit_06,seqkit_06_01,original,convert FASTQ to FASTA
seqkit,seqkit_06,seqkit_06_02,beginner,How do I convert FASTQ to FASTA?
seqkit,seqkit_06,seqkit_06_03,student,I need to convert FASTQ to FASTA
seqkit,seqkit_06,seqkit_06_04,polite,Please convert FASTQ to FASTA
seqkit,seqkit_06,seqkit_06_05,sysadmin,Use seqkit to convert FASTQ to FASTA
seqkit,seqkit_06,seqkit_06_06,goal_oriented,I want to convert FASTQ to FASTA
seqkit,seqkit_06,seqkit_06_07,expert,convert FASTQ FASTA
seqkit,seqkit_06,seqkit_06_08,detailed,"I have data that I need to process: convert FASTQ to FASTA, saving the result to a specified output file"
seqkit,seqkit_06,seqkit_06_09,informal,"Hey, can you help me convert FASTQ to FASTA?"
seqkit,seqkit_06,seqkit_06_10,alternative,Output FASTA by performing: convert FASTQ
seqkit,seqkit_07,seqkit_07_01,original,split FASTA file into chunks of 1000 sequences each
seqkit,seqkit_07,seqkit_07_02,beginner,How do I split FASTA file into chunks of 1000 sequences each?
seqkit,seqkit_07,seqkit_07_03,student,I need to split FASTA file into chunks of 1000 sequences each
seqkit,seqkit_07,seqkit_07_04,polite,Please split FASTA file into chunks of 1000 sequences each
seqkit,seqkit_07,seqkit_07_05,sysadmin,Use seqkit to split FASTA file into chunks of 1000 sequences each
seqkit,seqkit_07,seqkit_07_06,goal_oriented,I want to split FASTA file into chunks of 1000 sequences each
seqkit,seqkit_07,seqkit_07_07,expert,split FASTA file chunks of 1000 sequences each
seqkit,seqkit_07,seqkit_07_08,detailed,I have data that I need to process: split FASTA file into chunks of 1000 sequences each
seqkit,seqkit_07,seqkit_07_09,informal,"Hey, can you help me split FASTA file into chunks of 1000 sequences each?"
seqkit,seqkit_07,seqkit_07_10,alternative,Perform: split FASTA file into chunks of 1000 sequences each
seqkit,seqkit_08,seqkit_08_01,original,"get basic statistics of a FASTQ file (read count, total bases, average length) and write output to a file"
seqkit,seqkit_08,seqkit_08_02,beginner,"How do I get basic statistics of a FASTQ file (read count, total bases, average length) and write output to a file?"
seqkit,seqkit_08,seqkit_08_03,student,"I need to get basic statistics of a FASTQ file (read count, total bases, average length) and write output to a file"
seqkit,seqkit_08,seqkit_08_04,polite,"Please get basic statistics of a FASTQ file (read count, total bases, average length) and write output to a file"
seqkit,seqkit_08,seqkit_08_05,sysadmin,"Use seqkit to get basic statistics of a FASTQ file (read count, total bases, average length) and write output to a file"
seqkit,seqkit_08,seqkit_08_06,goal_oriented,"I want to get basic statistics of a FASTQ file (read count, total bases, average length) and write output to a file"
seqkit,seqkit_08,seqkit_08_07,expert,"get basic statistics of FASTQ file (read count, total bases, average length) write output file"
seqkit,seqkit_08,seqkit_08_08,detailed,"I have data that I need to process: get basic statistics of a FASTQ file (read count, total bases, average length) and write output to a file, saving the result to a specified output file"
seqkit,seqkit_08,seqkit_08_09,informal,"Hey, can you help me get basic statistics of a FASTQ file (read count, total bases, average length) and write output to a file?"
seqkit,seqkit_08,seqkit_08_10,alternative,"Write output to a file after get basic statistics of a FASTQ file (read count, total bases, average length)"
seqkit,seqkit_09,seqkit_09_01,original,filter reads shorter than 100 bp and write to a new file in quiet mode
seqkit,seqkit_09,seqkit_09_02,beginner,How do I filter reads shorter than 100 bp and write to a new file in quiet mode?
seqkit,seqkit_09,seqkit_09_03,student,I need to filter reads shorter than 100 bp and write to a new file in quiet mode
seqkit,seqkit_09,seqkit_09_04,polite,Please filter reads shorter than 100 bp and write to a new file in quiet mode
seqkit,seqkit_09,seqkit_09_05,sysadmin,Use seqkit to filter reads shorter than 100 bp and write to a new file in quiet mode
seqkit,seqkit_09,seqkit_09_06,goal_oriented,I want to filter reads shorter than 100 bp and write to a new file in quiet mode
seqkit,seqkit_09,seqkit_09_07,expert,filter reads shorter than 100 bp write new file quiet mode
seqkit,seqkit_09,seqkit_09_08,detailed,"I have data that I need to process: filter reads shorter than 100 bp and write to a new file in quiet mode, saving the result to a specified output file"
seqkit,seqkit_09,seqkit_09_09,informal,"Hey, can you help me filter reads shorter than 100 bp and write to a new file in quiet mode?"
seqkit,seqkit_09,seqkit_09_10,alternative,Write to a new file in quiet mode after filter reads shorter than 100 bp
seqkit,seqkit_10,seqkit_10_01,original,get the reverse complement of all sequences in a FASTA file with default parameters
seqkit,seqkit_10,seqkit_10_02,beginner,How do I get the reverse complement of all sequences in a FASTA file with default parameters?
seqkit,seqkit_10,seqkit_10_03,student,I need to get the reverse complement of all sequences in a FASTA file with default parameters
seqkit,seqkit_10,seqkit_10_04,polite,Please get the reverse complement of all sequences in a FASTA file with default parameters
seqkit,seqkit_10,seqkit_10_05,sysadmin,Use seqkit to get the reverse complement of all sequences in a FASTA file with default parameters
seqkit,seqkit_10,seqkit_10_06,goal_oriented,I want to get the reverse complement of all sequences in a FASTA file with default parameters
seqkit,seqkit_10,seqkit_10_07,expert,get reverse complement of all sequences FASTA file default parameters
seqkit,seqkit_10,seqkit_10_08,detailed,"I have data that I need to process: get the reverse complement of all sequences in a FASTA file with default parameters, utilizing multiple CPU threads for speed, saving the result to a specified output file"
seqkit,seqkit_10,seqkit_10_09,informal,"Hey, can you help me get the reverse complement of all sequences in a FASTA file with default parameters?"
seqkit,seqkit_10,seqkit_10_10,alternative,"With default parameters, get the reverse complement of all sequences in a FASTA file"
seqtk,seqtk_01,seqtk_01_01,original,subsample 1 million read pairs from paired-end FASTQ files
seqtk,seqtk_01,seqtk_01_02,beginner,How do I subsample 1 million read pairs from paired-end FASTQ files?
seqtk,seqtk_01,seqtk_01_03,student,I need to subsample 1 million read pairs from paired-end FASTQ files
seqtk,seqtk_01,seqtk_01_04,polite,Please subsample 1 million read pairs from paired-end FASTQ files
seqtk,seqtk_01,seqtk_01_05,sysadmin,Use seqtk to subsample 1 million read pairs from paired-end FASTQ files
seqtk,seqtk_01,seqtk_01_06,goal_oriented,I want to subsample 1 million read pairs from paired-end FASTQ files
seqtk,seqtk_01,seqtk_01_07,expert,subsample 1 million read pairs paired-end FASTQ files
seqtk,seqtk_01,seqtk_01_08,detailed,I have data that I need to process: subsample 1 million read pairs from paired-end FASTQ files
seqtk,seqtk_01,seqtk_01_09,informal,"Hey, can you help me subsample 1 million read pairs from paired-end FASTQ files?"
seqtk,seqtk_01,seqtk_01_10,alternative,Perform: subsample 1 million read pairs from paired-end FASTQ files
seqtk,seqtk_02,seqtk_02_01,original,convert FASTQ to FASTA format
seqtk,seqtk_02,seqtk_02_02,beginner,How do I convert FASTQ to FASTA format?
seqtk,seqtk_02,seqtk_02_03,student,I need to convert FASTQ to FASTA format
seqtk,seqtk_02,seqtk_02_04,polite,Please convert FASTQ to FASTA format
seqtk,seqtk_02,seqtk_02_05,sysadmin,Use seqtk to convert FASTQ to FASTA format
seqtk,seqtk_02,seqtk_02_06,goal_oriented,I want to convert FASTQ to FASTA format
seqtk,seqtk_02,seqtk_02_07,expert,convert FASTQ FASTA format
seqtk,seqtk_02,seqtk_02_08,detailed,I have data that I need to process: convert FASTQ to FASTA format
seqtk,seqtk_02,seqtk_02_09,informal,"Hey, can you help me convert FASTQ to FASTA format?"
seqtk,seqtk_02,seqtk_02_10,alternative,Output FASTA format by performing: convert FASTQ
seqtk,seqtk_03,seqtk_03_01,original,reverse complement all sequences in a FASTA file
seqtk,seqtk_03,seqtk_03_02,beginner,How do I reverse complement all sequences in a FASTA file?
seqtk,seqtk_03,seqtk_03_03,student,I need to reverse complement all sequences in a FASTA file
seqtk,seqtk_03,seqtk_03_04,polite,Please reverse complement all sequences in a FASTA file
seqtk,seqtk_03,seqtk_03_05,sysadmin,Use seqtk to reverse complement all sequences in a FASTA file
seqtk,seqtk_03,seqtk_03_06,goal_oriented,I want to reverse complement all sequences in a FASTA file
seqtk,seqtk_03,seqtk_03_07,expert,reverse complement all sequences FASTA file
seqtk,seqtk_03,seqtk_03_08,detailed,I have data that I need to process: reverse complement all sequences in a FASTA file
seqtk,seqtk_03,seqtk_03_09,informal,"Hey, can you help me reverse complement all sequences in a FASTA file?"
seqtk,seqtk_03,seqtk_03_10,alternative,Perform: reverse complement all sequences in a FASTA file
seqtk,seqtk_04,seqtk_04_01,original,extract specific sequences by name from a FASTQ file
seqtk,seqtk_04,seqtk_04_02,beginner,How do I extract specific sequences by name from a FASTQ file?
seqtk,seqtk_04,seqtk_04_03,student,I need to extract specific sequences by name from a FASTQ file
seqtk,seqtk_04,seqtk_04_04,polite,Please extract specific sequences by name from a FASTQ file
seqtk,seqtk_04,seqtk_04_05,sysadmin,Use seqtk to extract specific sequences by name from a FASTQ file
seqtk,seqtk_04,seqtk_04_06,goal_oriented,I want to extract specific sequences by name from a FASTQ file
seqtk,seqtk_04,seqtk_04_07,expert,extract specific sequences by name FASTQ file
seqtk,seqtk_04,seqtk_04_08,detailed,I have data that I need to process: extract specific sequences by name from a FASTQ file
seqtk,seqtk_04,seqtk_04_09,informal,"Hey, can you help me extract specific sequences by name from a FASTQ file?"
seqtk,seqtk_04,seqtk_04_10,alternative,Perform: extract specific sequences by name from a FASTQ file
seqtk,seqtk_05,seqtk_05_01,original,quality trim reads below Phred 20 from both ends
seqtk,seqtk_05,seqtk_05_02,beginner,How do I quality trim reads below Phred 20 from both ends?
seqtk,seqtk_05,seqtk_05_03,student,I need to quality trim reads below Phred 20 from both ends
seqtk,seqtk_05,seqtk_05_04,polite,Please quality trim reads below Phred 20 from both ends
seqtk,seqtk_05,seqtk_05_05,sysadmin,Use seqtk to quality trim reads below Phred 20 from both ends
seqtk,seqtk_05,seqtk_05_06,goal_oriented,I want to quality trim reads below Phred 20 from both ends
seqtk,seqtk_05,seqtk_05_07,expert,quality trim reads below Phred 20 both ends
seqtk,seqtk_05,seqtk_05_08,detailed,I have data that I need to process: quality trim reads below Phred 20 from both ends
seqtk,seqtk_05,seqtk_05_09,informal,"Hey, can you help me quality trim reads below Phred 20 from both ends?"
seqtk,seqtk_05,seqtk_05_10,alternative,Perform: quality trim reads below Phred 20 from both ends
seqtk,seqtk_06,seqtk_06_01,original,subsample 10% of reads with reproducible seed
seqtk,seqtk_06,seqtk_06_02,beginner,How do I subsample 10% of reads with reproducible seed?
seqtk,seqtk_06,seqtk_06_03,student,I need to subsample 10% of reads with reproducible seed
seqtk,seqtk_06,seqtk_06_04,polite,Please subsample 10% of reads with reproducible seed
seqtk,seqtk_06,seqtk_06_05,sysadmin,Use seqtk to subsample 10% of reads with reproducible seed
seqtk,seqtk_06,seqtk_06_06,goal_oriented,I want to subsample 10% of reads with reproducible seed
seqtk,seqtk_06,seqtk_06_07,expert,subsample 10% of reads reproducible seed
seqtk,seqtk_06,seqtk_06_08,detailed,I have data that I need to process: subsample 10% of reads with reproducible seed
seqtk,seqtk_06,seqtk_06_09,informal,"Hey, can you help me subsample 10% of reads with reproducible seed?"
seqtk,seqtk_06,seqtk_06_10,alternative,"With reproducible seed, subsample 10% of reads"
seqtk,seqtk_07,seqtk_07_01,original,subsample 1 million read pairs from paired-end FASTQ files
seqtk,seqtk_07,seqtk_07_02,beginner,How do I subsample 1 million read pairs from paired-end FASTQ files?
seqtk,seqtk_07,seqtk_07_03,student,I need to subsample 1 million read pairs from paired-end FASTQ files
seqtk,seqtk_07,seqtk_07_04,polite,Please subsample 1 million read pairs from paired-end FASTQ files
seqtk,seqtk_07,seqtk_07_05,sysadmin,Use seqtk to subsample 1 million read pairs from paired-end FASTQ files
seqtk,seqtk_07,seqtk_07_06,goal_oriented,I want to subsample 1 million read pairs from paired-end FASTQ files
seqtk,seqtk_07,seqtk_07_07,expert,subsample 1 million read pairs paired-end FASTQ files
seqtk,seqtk_07,seqtk_07_08,detailed,I have data that I need to process: subsample 1 million read pairs from paired-end FASTQ files
seqtk,seqtk_07,seqtk_07_09,informal,"Hey, can you help me subsample 1 million read pairs from paired-end FASTQ files?"
seqtk,seqtk_07,seqtk_07_10,alternative,Perform: subsample 1 million read pairs from paired-end FASTQ files
seqtk,seqtk_08,seqtk_08_01,original,convert FASTQ to FASTA format
seqtk,seqtk_08,seqtk_08_02,beginner,How do I convert FASTQ to FASTA format?
seqtk,seqtk_08,seqtk_08_03,student,I need to convert FASTQ to FASTA format
seqtk,seqtk_08,seqtk_08_04,polite,Please convert FASTQ to FASTA format
seqtk,seqtk_08,seqtk_08_05,sysadmin,Use seqtk to convert FASTQ to FASTA format
seqtk,seqtk_08,seqtk_08_06,goal_oriented,I want to convert FASTQ to FASTA format
seqtk,seqtk_08,seqtk_08_07,expert,convert FASTQ FASTA format
seqtk,seqtk_08,seqtk_08_08,detailed,I have data that I need to process: convert FASTQ to FASTA format
seqtk,seqtk_08,seqtk_08_09,informal,"Hey, can you help me convert FASTQ to FASTA format?"
seqtk,seqtk_08,seqtk_08_10,alternative,Output FASTA format by performing: convert FASTQ
seqtk,seqtk_09,seqtk_09_01,original,reverse complement all sequences in a FASTA file
seqtk,seqtk_09,seqtk_09_02,beginner,How do I reverse complement all sequences in a FASTA file?
seqtk,seqtk_09,seqtk_09_03,student,I need to reverse complement all sequences in a FASTA file
seqtk,seqtk_09,seqtk_09_04,polite,Please reverse complement all sequences in a FASTA file
seqtk,seqtk_09,seqtk_09_05,sysadmin,Use seqtk to reverse complement all sequences in a FASTA file
seqtk,seqtk_09,seqtk_09_06,goal_oriented,I want to reverse complement all sequences in a FASTA file
seqtk,seqtk_09,seqtk_09_07,expert,reverse complement all sequences FASTA file
seqtk,seqtk_09,seqtk_09_08,detailed,I have data that I need to process: reverse complement all sequences in a FASTA file
seqtk,seqtk_09,seqtk_09_09,informal,"Hey, can you help me reverse complement all sequences in a FASTA file?"
seqtk,seqtk_09,seqtk_09_10,alternative,Perform: reverse complement all sequences in a FASTA file
seqtk,seqtk_10,seqtk_10_01,original,extract specific sequences by name from a FASTQ file with default parameters
seqtk,seqtk_10,seqtk_10_02,beginner,How do I extract specific sequences by name from a FASTQ file with default parameters?
seqtk,seqtk_10,seqtk_10_03,student,I need to extract specific sequences by name from a FASTQ file with default parameters
seqtk,seqtk_10,seqtk_10_04,polite,Please extract specific sequences by name from a FASTQ file with default parameters
seqtk,seqtk_10,seqtk_10_05,sysadmin,Use seqtk to extract specific sequences by name from a FASTQ file with default parameters
seqtk,seqtk_10,seqtk_10_06,goal_oriented,I want to extract specific sequences by name from a FASTQ file with default parameters
seqtk,seqtk_10,seqtk_10_07,expert,extract specific sequences by name FASTQ file default parameters
seqtk,seqtk_10,seqtk_10_08,detailed,I have data that I need to process: extract specific sequences by name from a FASTQ file with default parameters
seqtk,seqtk_10,seqtk_10_09,informal,"Hey, can you help me extract specific sequences by name from a FASTQ file with default parameters?"
seqtk,seqtk_10,seqtk_10_10,alternative,"With default parameters, extract specific sequences by name from a FASTQ file"
shapeit4,shapeit4_01,shapeit4_01_01,original,phase a chromosome using SHAPEIT4
shapeit4,shapeit4_01,shapeit4_01_02,beginner,How do I phase a chromosome using SHAPEIT4?
shapeit4,shapeit4_01,shapeit4_01_03,student,I need to phase a chromosome using SHAPEIT4
shapeit4,shapeit4_01,shapeit4_01_04,polite,Please phase a chromosome using SHAPEIT4
shapeit4,shapeit4_01,shapeit4_01_05,sysadmin,Use shapeit4 to phase a chromosome using SHAPEIT4
shapeit4,shapeit4_01,shapeit4_01_06,goal_oriented,I want to phase a chromosome using SHAPEIT4
shapeit4,shapeit4_01,shapeit4_01_07,expert,phase chromosome SHAPEIT4
shapeit4,shapeit4_01,shapeit4_01_08,detailed,"I have data that I need to process: phase a chromosome using SHAPEIT4, saving the result to a specified output file"
shapeit4,shapeit4_01,shapeit4_01_09,informal,"Hey, can you help me phase a chromosome using SHAPEIT4?"
shapeit4,shapeit4_01,shapeit4_01_10,alternative,Perform: phase a chromosome using SHAPEIT4
shapeit4,shapeit4_02,shapeit4_02_01,original,phase with a reference haplotype scaffold panel
shapeit4,shapeit4_02,shapeit4_02_02,beginner,How do I phase with a reference haplotype scaffold panel?
shapeit4,shapeit4_02,shapeit4_02_03,student,I need to phase with a reference haplotype scaffold panel
shapeit4,shapeit4_02,shapeit4_02_04,polite,Please phase with a reference haplotype scaffold panel
shapeit4,shapeit4_02,shapeit4_02_05,sysadmin,Use shapeit4 to phase with a reference haplotype scaffold panel
shapeit4,shapeit4_02,shapeit4_02_06,goal_oriented,I want to phase with a reference haplotype scaffold panel
shapeit4,shapeit4_02,shapeit4_02_07,expert,phase reference haplotype scaffold panel
shapeit4,shapeit4_02,shapeit4_02_08,detailed,"I have data that I need to process: phase with a reference haplotype scaffold panel, saving the result to a specified output file"
shapeit4,shapeit4_02,shapeit4_02_09,informal,"Hey, can you help me phase with a reference haplotype scaffold panel?"
shapeit4,shapeit4_02,shapeit4_02_10,alternative,"With a reference haplotype scaffold panel, phase"
shapeit4,shapeit4_03,shapeit4_03_01,original,phase sequencing data with higher accuracy settings
shapeit4,shapeit4_03,shapeit4_03_02,beginner,How do I phase sequencing data with higher accuracy settings?
shapeit4,shapeit4_03,shapeit4_03_03,student,I need to phase sequencing data with higher accuracy settings
shapeit4,shapeit4_03,shapeit4_03_04,polite,Please phase sequencing data with higher accuracy settings
shapeit4,shapeit4_03,shapeit4_03_05,sysadmin,Use shapeit4 to phase sequencing data with higher accuracy settings
shapeit4,shapeit4_03,shapeit4_03_06,goal_oriented,I want to phase sequencing data with higher accuracy settings
shapeit4,shapeit4_03,shapeit4_03_07,expert,phase sequencing data higher accuracy settings
shapeit4,shapeit4_03,shapeit4_03_08,detailed,"I have data that I need to process: phase sequencing data with higher accuracy settings, saving the result to a specified output file"
shapeit4,shapeit4_03,shapeit4_03_09,informal,"Hey, can you help me phase sequencing data with higher accuracy settings?"
shapeit4,shapeit4_03,shapeit4_03_10,alternative,"With higher accuracy settings, phase sequencing data"
shapeit4,shapeit4_04,shapeit4_04_01,original,phase a chromosome using SHAPEIT4 in quiet mode
shapeit4,shapeit4_04,shapeit4_04_02,beginner,How do I phase a chromosome using SHAPEIT4 in quiet mode?
shapeit4,shapeit4_04,shapeit4_04_03,student,I need to phase a chromosome using SHAPEIT4 in quiet mode
shapeit4,shapeit4_04,shapeit4_04_04,polite,Please phase a chromosome using SHAPEIT4 in quiet mode
shapeit4,shapeit4_04,shapeit4_04_05,sysadmin,Use shapeit4 to phase a chromosome using SHAPEIT4 in quiet mode
shapeit4,shapeit4_04,shapeit4_04_06,goal_oriented,I want to phase a chromosome using SHAPEIT4 in quiet mode
shapeit4,shapeit4_04,shapeit4_04_07,expert,phase chromosome SHAPEIT4 quiet mode
shapeit4,shapeit4_04,shapeit4_04_08,detailed,"I have data that I need to process: phase a chromosome using SHAPEIT4 in quiet mode, saving the result to a specified output file"
shapeit4,shapeit4_04,shapeit4_04_09,informal,"Hey, can you help me phase a chromosome using SHAPEIT4 in quiet mode?"
shapeit4,shapeit4_04,shapeit4_04_10,alternative,Perform: phase a chromosome using SHAPEIT4 in quiet mode
shapeit4,shapeit4_05,shapeit4_05_01,original,phase with a reference haplotype scaffold panel with default parameters
shapeit4,shapeit4_05,shapeit4_05_02,beginner,How do I phase with a reference haplotype scaffold panel with default parameters?
shapeit4,shapeit4_05,shapeit4_05_03,student,I need to phase with a reference haplotype scaffold panel with default parameters
shapeit4,shapeit4_05,shapeit4_05_04,polite,Please phase with a reference haplotype scaffold panel with default parameters
shapeit4,shapeit4_05,shapeit4_05_05,sysadmin,Use shapeit4 to phase with a reference haplotype scaffold panel with default parameters
shapeit4,shapeit4_05,shapeit4_05_06,goal_oriented,I want to phase with a reference haplotype scaffold panel with default parameters
shapeit4,shapeit4_05,shapeit4_05_07,expert,phase reference haplotype scaffold panel default parameters
shapeit4,shapeit4_05,shapeit4_05_08,detailed,"I have data that I need to process: phase with a reference haplotype scaffold panel with default parameters, saving the result to a specified output file"
shapeit4,shapeit4_05,shapeit4_05_09,informal,"Hey, can you help me phase with a reference haplotype scaffold panel with default parameters?"
shapeit4,shapeit4_05,shapeit4_05_10,alternative,"With a reference haplotype scaffold panel with default parameters, phase"
shapeit4,shapeit4_06,shapeit4_06_01,original,phase sequencing data with higher accuracy settings with verbose output
shapeit4,shapeit4_06,shapeit4_06_02,beginner,How do I phase sequencing data with higher accuracy settings with verbose output?
shapeit4,shapeit4_06,shapeit4_06_03,student,I need to phase sequencing data with higher accuracy settings with verbose output
shapeit4,shapeit4_06,shapeit4_06_04,polite,Please phase sequencing data with higher accuracy settings with verbose output
shapeit4,shapeit4_06,shapeit4_06_05,sysadmin,Use shapeit4 to phase sequencing data with higher accuracy settings with verbose output
shapeit4,shapeit4_06,shapeit4_06_06,goal_oriented,I want to phase sequencing data with higher accuracy settings with verbose output
shapeit4,shapeit4_06,shapeit4_06_07,expert,phase sequencing data higher accuracy settings verbose output
shapeit4,shapeit4_06,shapeit4_06_08,detailed,"I have data that I need to process: phase sequencing data with higher accuracy settings with verbose output, saving the result to a specified output file"
shapeit4,shapeit4_06,shapeit4_06_09,informal,"Hey, can you help me phase sequencing data with higher accuracy settings with verbose output?"
shapeit4,shapeit4_06,shapeit4_06_10,alternative,"With higher accuracy settings with verbose output, phase sequencing data"
shapeit4,shapeit4_07,shapeit4_07_01,original,phase a chromosome using SHAPEIT4 using multiple threads
shapeit4,shapeit4_07,shapeit4_07_02,beginner,How do I phase a chromosome using SHAPEIT4 using multiple threads?
shapeit4,shapeit4_07,shapeit4_07_03,student,I need to phase a chromosome using SHAPEIT4 using multiple threads
shapeit4,shapeit4_07,shapeit4_07_04,polite,Please phase a chromosome using SHAPEIT4 using multiple threads
shapeit4,shapeit4_07,shapeit4_07_05,sysadmin,Use shapeit4 to phase a chromosome using SHAPEIT4 using multiple threads
shapeit4,shapeit4_07,shapeit4_07_06,goal_oriented,I want to phase a chromosome using SHAPEIT4 using multiple threads
shapeit4,shapeit4_07,shapeit4_07_07,expert,phase chromosome SHAPEIT4 multiple threads
shapeit4,shapeit4_07,shapeit4_07_08,detailed,"I have data that I need to process: phase a chromosome using SHAPEIT4 using multiple threads, utilizing multiple CPU threads for speed, saving the result to a specified output file"
shapeit4,shapeit4_07,shapeit4_07_09,informal,"Hey, can you help me phase a chromosome using SHAPEIT4 using multiple threads?"
shapeit4,shapeit4_07,shapeit4_07_10,alternative,Perform: phase a chromosome using SHAPEIT4 using multiple threads
shapeit4,shapeit4_08,shapeit4_08_01,original,phase with a reference haplotype scaffold panel and write output to a file
shapeit4,shapeit4_08,shapeit4_08_02,beginner,How do I phase with a reference haplotype scaffold panel and write output to a file?
shapeit4,shapeit4_08,shapeit4_08_03,student,I need to phase with a reference haplotype scaffold panel and write output to a file
shapeit4,shapeit4_08,shapeit4_08_04,polite,Please phase with a reference haplotype scaffold panel and write output to a file
shapeit4,shapeit4_08,shapeit4_08_05,sysadmin,Use shapeit4 to phase with a reference haplotype scaffold panel and write output to a file
shapeit4,shapeit4_08,shapeit4_08_06,goal_oriented,I want to phase with a reference haplotype scaffold panel and write output to a file
shapeit4,shapeit4_08,shapeit4_08_07,expert,phase reference haplotype scaffold panel write output file
shapeit4,shapeit4_08,shapeit4_08_08,detailed,"I have data that I need to process: phase with a reference haplotype scaffold panel and write output to a file, saving the result to a specified output file"
shapeit4,shapeit4_08,shapeit4_08_09,informal,"Hey, can you help me phase with a reference haplotype scaffold panel and write output to a file?"
shapeit4,shapeit4_08,shapeit4_08_10,alternative,Write output to a file after phase with a reference haplotype scaffold panel
shapeit4,shapeit4_09,shapeit4_09_01,original,phase sequencing data with higher accuracy settings in quiet mode
shapeit4,shapeit4_09,shapeit4_09_02,beginner,How do I phase sequencing data with higher accuracy settings in quiet mode?
shapeit4,shapeit4_09,shapeit4_09_03,student,I need to phase sequencing data with higher accuracy settings in quiet mode
shapeit4,shapeit4_09,shapeit4_09_04,polite,Please phase sequencing data with higher accuracy settings in quiet mode
shapeit4,shapeit4_09,shapeit4_09_05,sysadmin,Use shapeit4 to phase sequencing data with higher accuracy settings in quiet mode
shapeit4,shapeit4_09,shapeit4_09_06,goal_oriented,I want to phase sequencing data with higher accuracy settings in quiet mode
shapeit4,shapeit4_09,shapeit4_09_07,expert,phase sequencing data higher accuracy settings quiet mode
shapeit4,shapeit4_09,shapeit4_09_08,detailed,"I have data that I need to process: phase sequencing data with higher accuracy settings in quiet mode, saving the result to a specified output file"
shapeit4,shapeit4_09,shapeit4_09_09,informal,"Hey, can you help me phase sequencing data with higher accuracy settings in quiet mode?"
shapeit4,shapeit4_09,shapeit4_09_10,alternative,"With higher accuracy settings in quiet mode, phase sequencing data"
shapeit4,shapeit4_10,shapeit4_10_01,original,phase a chromosome using SHAPEIT4 with default parameters
shapeit4,shapeit4_10,shapeit4_10_02,beginner,How do I phase a chromosome using SHAPEIT4 with default parameters?
shapeit4,shapeit4_10,shapeit4_10_03,student,I need to phase a chromosome using SHAPEIT4 with default parameters
shapeit4,shapeit4_10,shapeit4_10_04,polite,Please phase a chromosome using SHAPEIT4 with default parameters
shapeit4,shapeit4_10,shapeit4_10_05,sysadmin,Use shapeit4 to phase a chromosome using SHAPEIT4 with default parameters
shapeit4,shapeit4_10,shapeit4_10_06,goal_oriented,I want to phase a chromosome using SHAPEIT4 with default parameters
shapeit4,shapeit4_10,shapeit4_10_07,expert,phase chromosome SHAPEIT4 default parameters
shapeit4,shapeit4_10,shapeit4_10_08,detailed,"I have data that I need to process: phase a chromosome using SHAPEIT4 with default parameters, saving the result to a specified output file"
shapeit4,shapeit4_10,shapeit4_10_09,informal,"Hey, can you help me phase a chromosome using SHAPEIT4 with default parameters?"
shapeit4,shapeit4_10,shapeit4_10_10,alternative,"With default parameters, phase a chromosome using SHAPEIT4"
snakemake,snakemake_01,snakemake_01_01,original,run a workflow using all available cores
snakemake,snakemake_01,snakemake_01_02,beginner,How do I run a workflow using all available cores?
snakemake,snakemake_01,snakemake_01_03,student,I need to run a workflow using all available cores
snakemake,snakemake_01,snakemake_01_04,polite,Please run a workflow using all available cores
snakemake,snakemake_01,snakemake_01_05,sysadmin,Use snakemake to run a workflow using all available cores
snakemake,snakemake_01,snakemake_01_06,goal_oriented,I want to run a workflow using all available cores
snakemake,snakemake_01,snakemake_01_07,expert,run workflow all available cores
snakemake,snakemake_01,snakemake_01_08,detailed,I have data that I need to process: run a workflow using all available cores
snakemake,snakemake_01,snakemake_01_09,informal,"Hey, can you help me run a workflow using all available cores?"
snakemake,snakemake_01,snakemake_01_10,alternative,Perform: run a workflow using all available cores
snakemake,snakemake_02,snakemake_02_01,original,dry-run to see what would be executed
snakemake,snakemake_02,snakemake_02_02,beginner,How do I dry-run to see what would be executed?
snakemake,snakemake_02,snakemake_02_03,student,I need to dry-run to see what would be executed
snakemake,snakemake_02,snakemake_02_04,polite,Please dry-run to see what would be executed
snakemake,snakemake_02,snakemake_02_05,sysadmin,Use snakemake to dry-run to see what would be executed
snakemake,snakemake_02,snakemake_02_06,goal_oriented,I want to dry-run to see what would be executed
snakemake,snakemake_02,snakemake_02_07,expert,dry-run see what would be executed
snakemake,snakemake_02,snakemake_02_08,detailed,I have data that I need to process: dry-run to see what would be executed
snakemake,snakemake_02,snakemake_02_09,informal,"Hey, can you help me dry-run to see what would be executed?"
snakemake,snakemake_02,snakemake_02_10,alternative,Output see what would be executed by performing: dry-run
snakemake,snakemake_03,snakemake_03_01,original,run a workflow on a Slurm cluster
snakemake,snakemake_03,snakemake_03_02,beginner,How do I run a workflow on a Slurm cluster?
snakemake,snakemake_03,snakemake_03_03,student,I need to run a workflow on a Slurm cluster
snakemake,snakemake_03,snakemake_03_04,polite,Please run a workflow on a Slurm cluster
snakemake,snakemake_03,snakemake_03_05,sysadmin,Use snakemake to run a workflow on a Slurm cluster
snakemake,snakemake_03,snakemake_03_06,goal_oriented,I want to run a workflow on a Slurm cluster
snakemake,snakemake_03,snakemake_03_07,expert,run workflow on Slurm cluster
snakemake,snakemake_03,snakemake_03_08,detailed,I have data that I need to process: run a workflow on a Slurm cluster
snakemake,snakemake_03,snakemake_03_09,informal,"Hey, can you help me run a workflow on a Slurm cluster?"
snakemake,snakemake_03,snakemake_03_10,alternative,Perform: run a workflow on a Slurm cluster
snakemake,snakemake_04,snakemake_04_01,original,run with a configuration file
snakemake,snakemake_04,snakemake_04_02,beginner,How do I run with a configuration file?
snakemake,snakemake_04,snakemake_04_03,student,I need to run with a configuration file
snakemake,snakemake_04,snakemake_04_04,polite,Please run with a configuration file
snakemake,snakemake_04,snakemake_04_05,sysadmin,Use snakemake to run with a configuration file
snakemake,snakemake_04,snakemake_04_06,goal_oriented,I want to run with a configuration file
snakemake,snakemake_04,snakemake_04_07,expert,run configuration file
snakemake,snakemake_04,snakemake_04_08,detailed,I have data that I need to process: run with a configuration file
snakemake,snakemake_04,snakemake_04_09,informal,"Hey, can you help me run with a configuration file?"
snakemake,snakemake_04,snakemake_04_10,alternative,"With a configuration file, run"
snakemake,snakemake_05,snakemake_05_01,original,use a named profile for cluster execution
snakemake,snakemake_05,snakemake_05_02,beginner,How do I use a named profile for cluster execution?
snakemake,snakemake_05,snakemake_05_03,student,I need to use a named profile for cluster execution
snakemake,snakemake_05,snakemake_05_04,polite,Please use a named profile for cluster execution
snakemake,snakemake_05,snakemake_05_05,sysadmin,Use snakemake to use a named profile for cluster execution
snakemake,snakemake_05,snakemake_05_06,goal_oriented,I want to use a named profile for cluster execution
snakemake,snakemake_05,snakemake_05_07,expert,use named profile cluster execution
snakemake,snakemake_05,snakemake_05_08,detailed,I have data that I need to process: use a named profile for cluster execution
snakemake,snakemake_05,snakemake_05_09,informal,"Hey, can you help me use a named profile for cluster execution?"
snakemake,snakemake_05,snakemake_05_10,alternative,Perform: use a named profile for cluster execution
snakemake,snakemake_06,snakemake_06_01,original,force re-run of specific rules
snakemake,snakemake_06,snakemake_06_02,beginner,How do I force re-run of specific rules?
snakemake,snakemake_06,snakemake_06_03,student,I need to force re-run of specific rules
snakemake,snakemake_06,snakemake_06_04,polite,Please force re-run of specific rules
snakemake,snakemake_06,snakemake_06_05,sysadmin,Use snakemake to force re-run of specific rules
snakemake,snakemake_06,snakemake_06_06,goal_oriented,I want to force re-run of specific rules
snakemake,snakemake_06,snakemake_06_07,expert,force re-run of specific rules
snakemake,snakemake_06,snakemake_06_08,detailed,I have data that I need to process: force re-run of specific rules
snakemake,snakemake_06,snakemake_06_09,informal,"Hey, can you help me force re-run of specific rules?"
snakemake,snakemake_06,snakemake_06_10,alternative,Perform: force re-run of specific rules
snakemake,snakemake_07,snakemake_07_01,original,unlock a workflow after a crash
snakemake,snakemake_07,snakemake_07_02,beginner,How do I unlock a workflow after a crash?
snakemake,snakemake_07,snakemake_07_03,student,I need to unlock a workflow after a crash
snakemake,snakemake_07,snakemake_07_04,polite,Please unlock a workflow after a crash
snakemake,snakemake_07,snakemake_07_05,sysadmin,Use snakemake to unlock a workflow after a crash
snakemake,snakemake_07,snakemake_07_06,goal_oriented,I want to unlock a workflow after a crash
snakemake,snakemake_07,snakemake_07_07,expert,unlock workflow after crash
snakemake,snakemake_07,snakemake_07_08,detailed,I have data that I need to process: unlock a workflow after a crash
snakemake,snakemake_07,snakemake_07_09,informal,"Hey, can you help me unlock a workflow after a crash?"
snakemake,snakemake_07,snakemake_07_10,alternative,Perform: unlock a workflow after a crash
snakemake,snakemake_08,snakemake_08_01,original,generate a rule dependency graph (DAG)
snakemake,snakemake_08,snakemake_08_02,beginner,How do I generate a rule dependency graph (DAG)?
snakemake,snakemake_08,snakemake_08_03,student,I need to generate a rule dependency graph (DAG)
snakemake,snakemake_08,snakemake_08_04,polite,Please generate a rule dependency graph (DAG)
snakemake,snakemake_08,snakemake_08_05,sysadmin,Use snakemake to generate a rule dependency graph (DAG)
snakemake,snakemake_08,snakemake_08_06,goal_oriented,I want to generate a rule dependency graph (DAG)
snakemake,snakemake_08,snakemake_08_07,expert,generate rule dependency graph (DAG)
snakemake,snakemake_08,snakemake_08_08,detailed,I have data that I need to process: generate a rule dependency graph (DAG)
snakemake,snakemake_08,snakemake_08_09,informal,"Hey, can you help me generate a rule dependency graph (DAG)?"
snakemake,snakemake_08,snakemake_08_10,alternative,Perform: generate a rule dependency graph (DAG)
snakemake,snakemake_09,snakemake_09_01,original,clean up incomplete output files and restart
snakemake,snakemake_09,snakemake_09_02,beginner,How do I clean up incomplete output files and restart?
snakemake,snakemake_09,snakemake_09_03,student,I need to clean up incomplete output files and restart
snakemake,snakemake_09,snakemake_09_04,polite,Please clean up incomplete output files and restart
snakemake,snakemake_09,snakemake_09_05,sysadmin,Use snakemake to clean up incomplete output files and restart
snakemake,snakemake_09,snakemake_09_06,goal_oriented,I want to clean up incomplete output files and restart
snakemake,snakemake_09,snakemake_09_07,expert,clean up incomplete output files restart
snakemake,snakemake_09,snakemake_09_08,detailed,I have data that I need to process: clean up incomplete output files and restart
snakemake,snakemake_09,snakemake_09_09,informal,"Hey, can you help me clean up incomplete output files and restart?"
snakemake,snakemake_09,snakemake_09_10,alternative,Restart after clean up incomplete output files
snakemake,snakemake_10,snakemake_10_01,original,run with Singularity containers
snakemake,snakemake_10,snakemake_10_02,beginner,How do I run with Singularity containers?
snakemake,snakemake_10,snakemake_10_03,student,I need to run with Singularity containers
snakemake,snakemake_10,snakemake_10_04,polite,Please run with Singularity containers
snakemake,snakemake_10,snakemake_10_05,sysadmin,Use snakemake to run with Singularity containers
snakemake,snakemake_10,snakemake_10_06,goal_oriented,I want to run with Singularity containers
snakemake,snakemake_10,snakemake_10_07,expert,run Singularity containers
snakemake,snakemake_10,snakemake_10_08,detailed,I have data that I need to process: run with Singularity containers
snakemake,snakemake_10,snakemake_10_09,informal,"Hey, can you help me run with Singularity containers?"
snakemake,snakemake_10,snakemake_10_10,alternative,"With Singularity containers, run"
sniffles,sniffles_01,sniffles_01_01,original,call SVs from a single Oxford Nanopore BAM file
sniffles,sniffles_01,sniffles_01_02,beginner,How do I call SVs from a single Oxford Nanopore BAM file?
sniffles,sniffles_01,sniffles_01_03,student,I need to call SVs from a single Oxford Nanopore BAM file
sniffles,sniffles_01,sniffles_01_04,polite,Please call SVs from a single Oxford Nanopore BAM file
sniffles,sniffles_01,sniffles_01_05,sysadmin,Use sniffles to call SVs from a single Oxford Nanopore BAM file
sniffles,sniffles_01,sniffles_01_06,goal_oriented,I want to call SVs from a single Oxford Nanopore BAM file
sniffles,sniffles_01,sniffles_01_07,expert,call SVs single Oxford Nanopore BAM file
sniffles,sniffles_01,sniffles_01_08,detailed,"I have data that I need to process: call SVs from a single Oxford Nanopore BAM file, utilizing multiple CPU threads for speed"
sniffles,sniffles_01,sniffles_01_09,informal,"Hey, can you help me call SVs from a single Oxford Nanopore BAM file?"
sniffles,sniffles_01,sniffles_01_10,alternative,Perform: call SVs from a single Oxford Nanopore BAM file
sniffles,sniffles_02,sniffles_02_01,original,call SVs with minimum read support of 5 and minimum SV length of 50 bp
sniffles,sniffles_02,sniffles_02_02,beginner,How do I call SVs with minimum read support of 5 and minimum SV length of 50 bp?
sniffles,sniffles_02,sniffles_02_03,student,I need to call SVs with minimum read support of 5 and minimum SV length of 50 bp
sniffles,sniffles_02,sniffles_02_04,polite,Please call SVs with minimum read support of 5 and minimum SV length of 50 bp
sniffles,sniffles_02,sniffles_02_05,sysadmin,Use sniffles to call SVs with minimum read support of 5 and minimum SV length of 50 bp
sniffles,sniffles_02,sniffles_02_06,goal_oriented,I want to call SVs with minimum read support of 5 and minimum SV length of 50 bp
sniffles,sniffles_02,sniffles_02_07,expert,call SVs minimum read support of 5 minimum SV length of 50 bp
sniffles,sniffles_02,sniffles_02_08,detailed,"I have data that I need to process: call SVs with minimum read support of 5 and minimum SV length of 50 bp, utilizing multiple CPU threads for speed"
sniffles,sniffles_02,sniffles_02_09,informal,"Hey, can you help me call SVs with minimum read support of 5 and minimum SV length of 50 bp?"
sniffles,sniffles_02,sniffles_02_10,alternative,Minimum SV length of 50 bp after call SVs with minimum read support of 5
sniffles,sniffles_03,sniffles_03_01,original,generate SNF file for multi-sample population SV calling
sniffles,sniffles_03,sniffles_03_02,beginner,How do I generate SNF file for multi-sample population SV calling?
sniffles,sniffles_03,sniffles_03_03,student,I need to generate SNF file for multi-sample population SV calling
sniffles,sniffles_03,sniffles_03_04,polite,Please generate SNF file for multi-sample population SV calling
sniffles,sniffles_03,sniffles_03_05,sysadmin,Use sniffles to generate SNF file for multi-sample population SV calling
sniffles,sniffles_03,sniffles_03_06,goal_oriented,I want to generate SNF file for multi-sample population SV calling
sniffles,sniffles_03,sniffles_03_07,expert,generate SNF file multi-sample population SV calling
sniffles,sniffles_03,sniffles_03_08,detailed,"I have data that I need to process: generate SNF file for multi-sample population SV calling, utilizing multiple CPU threads for speed"
sniffles,sniffles_03,sniffles_03_09,informal,"Hey, can you help me generate SNF file for multi-sample population SV calling?"
sniffles,sniffles_03,sniffles_03_10,alternative,Perform: generate SNF file for multi-sample population SV calling
sniffles,sniffles_04,sniffles_04_01,original,combine multiple SNF files for population-level SV calling
sniffles,sniffles_04,sniffles_04_02,beginner,How do I combine multiple SNF files for population-level SV calling?
sniffles,sniffles_04,sniffles_04_03,student,I need to combine multiple SNF files for population-level SV calling
sniffles,sniffles_04,sniffles_04_04,polite,Please combine multiple SNF files for population-level SV calling
sniffles,sniffles_04,sniffles_04_05,sysadmin,Use sniffles to combine multiple SNF files for population-level SV calling
sniffles,sniffles_04,sniffles_04_06,goal_oriented,I want to combine multiple SNF files for population-level SV calling
sniffles,sniffles_04,sniffles_04_07,expert,combine multiple SNF files population-level SV calling
sniffles,sniffles_04,sniffles_04_08,detailed,"I have data that I need to process: combine multiple SNF files for population-level SV calling, utilizing multiple CPU threads for speed"
sniffles,sniffles_04,sniffles_04_09,informal,"Hey, can you help me combine multiple SNF files for population-level SV calling?"
sniffles,sniffles_04,sniffles_04_10,alternative,Perform: combine multiple SNF files for population-level SV calling
sniffles,sniffles_05,sniffles_05_01,original,call mosaic or somatic SVs with low frequency support
sniffles,sniffles_05,sniffles_05_02,beginner,How do I call mosaic or somatic SVs with low frequency support?
sniffles,sniffles_05,sniffles_05_03,student,I need to call mosaic or somatic SVs with low frequency support
sniffles,sniffles_05,sniffles_05_04,polite,Please call mosaic or somatic SVs with low frequency support
sniffles,sniffles_05,sniffles_05_05,sysadmin,Use sniffles to call mosaic or somatic SVs with low frequency support
sniffles,sniffles_05,sniffles_05_06,goal_oriented,I want to call mosaic or somatic SVs with low frequency support
sniffles,sniffles_05,sniffles_05_07,expert,call mosaic or somatic SVs low frequency support
sniffles,sniffles_05,sniffles_05_08,detailed,"I have data that I need to process: call mosaic or somatic SVs with low frequency support, utilizing multiple CPU threads for speed"
sniffles,sniffles_05,sniffles_05_09,informal,"Hey, can you help me call mosaic or somatic SVs with low frequency support?"
sniffles,sniffles_05,sniffles_05_10,alternative,"With low frequency support, call mosaic or somatic SVs"
sniffles,sniffles_06,sniffles_06_01,original,call SVs from a single Oxford Nanopore BAM file with verbose output
sniffles,sniffles_06,sniffles_06_02,beginner,How do I call SVs from a single Oxford Nanopore BAM file with verbose output?
sniffles,sniffles_06,sniffles_06_03,student,I need to call SVs from a single Oxford Nanopore BAM file with verbose output
sniffles,sniffles_06,sniffles_06_04,polite,Please call SVs from a single Oxford Nanopore BAM file with verbose output
sniffles,sniffles_06,sniffles_06_05,sysadmin,Use sniffles to call SVs from a single Oxford Nanopore BAM file with verbose output
sniffles,sniffles_06,sniffles_06_06,goal_oriented,I want to call SVs from a single Oxford Nanopore BAM file with verbose output
sniffles,sniffles_06,sniffles_06_07,expert,call SVs single Oxford Nanopore BAM file verbose output
sniffles,sniffles_06,sniffles_06_08,detailed,"I have data that I need to process: call SVs from a single Oxford Nanopore BAM file with verbose output, utilizing multiple CPU threads for speed"
sniffles,sniffles_06,sniffles_06_09,informal,"Hey, can you help me call SVs from a single Oxford Nanopore BAM file with verbose output?"
sniffles,sniffles_06,sniffles_06_10,alternative,"With verbose output, call SVs from a single Oxford Nanopore BAM file"
sniffles,sniffles_07,sniffles_07_01,original,call SVs with minimum read support of 5 and minimum SV length of 50 bp using multiple threads
sniffles,sniffles_07,sniffles_07_02,beginner,How do I call SVs with minimum read support of 5 and minimum SV length of 50 bp using multiple threads?
sniffles,sniffles_07,sniffles_07_03,student,I need to call SVs with minimum read support of 5 and minimum SV length of 50 bp using multiple threads
sniffles,sniffles_07,sniffles_07_04,polite,Please call SVs with minimum read support of 5 and minimum SV length of 50 bp using multiple threads
sniffles,sniffles_07,sniffles_07_05,sysadmin,Use sniffles to call SVs with minimum read support of 5 and minimum SV length of 50 bp using multiple threads
sniffles,sniffles_07,sniffles_07_06,goal_oriented,I want to call SVs with minimum read support of 5 and minimum SV length of 50 bp using multiple threads
sniffles,sniffles_07,sniffles_07_07,expert,call SVs minimum read support of 5 minimum SV length of 50 bp multiple threads
sniffles,sniffles_07,sniffles_07_08,detailed,"I have data that I need to process: call SVs with minimum read support of 5 and minimum SV length of 50 bp using multiple threads, utilizing multiple CPU threads for speed"
sniffles,sniffles_07,sniffles_07_09,informal,"Hey, can you help me call SVs with minimum read support of 5 and minimum SV length of 50 bp using multiple threads?"
sniffles,sniffles_07,sniffles_07_10,alternative,Minimum SV length of 50 bp using multiple threads after call SVs with minimum read support of 5
sniffles,sniffles_08,sniffles_08_01,original,generate SNF file for multi-sample population SV calling and write output to a file
sniffles,sniffles_08,sniffles_08_02,beginner,How do I generate SNF file for multi-sample population SV calling and write output to a file?
sniffles,sniffles_08,sniffles_08_03,student,I need to generate SNF file for multi-sample population SV calling and write output to a file
sniffles,sniffles_08,sniffles_08_04,polite,Please generate SNF file for multi-sample population SV calling and write output to a file
sniffles,sniffles_08,sniffles_08_05,sysadmin,Use sniffles to generate SNF file for multi-sample population SV calling and write output to a file
sniffles,sniffles_08,sniffles_08_06,goal_oriented,I want to generate SNF file for multi-sample population SV calling and write output to a file
sniffles,sniffles_08,sniffles_08_07,expert,generate SNF file multi-sample population SV calling write output file
sniffles,sniffles_08,sniffles_08_08,detailed,"I have data that I need to process: generate SNF file for multi-sample population SV calling and write output to a file, utilizing multiple CPU threads for speed, saving the result to a specified output file"
sniffles,sniffles_08,sniffles_08_09,informal,"Hey, can you help me generate SNF file for multi-sample population SV calling and write output to a file?"
sniffles,sniffles_08,sniffles_08_10,alternative,Write output to a file after generate SNF file for multi-sample population SV calling
sniffles,sniffles_09,sniffles_09_01,original,combine multiple SNF files for population-level SV calling in quiet mode
sniffles,sniffles_09,sniffles_09_02,beginner,How do I combine multiple SNF files for population-level SV calling in quiet mode?
sniffles,sniffles_09,sniffles_09_03,student,I need to combine multiple SNF files for population-level SV calling in quiet mode
sniffles,sniffles_09,sniffles_09_04,polite,Please combine multiple SNF files for population-level SV calling in quiet mode
sniffles,sniffles_09,sniffles_09_05,sysadmin,Use sniffles to combine multiple SNF files for population-level SV calling in quiet mode
sniffles,sniffles_09,sniffles_09_06,goal_oriented,I want to combine multiple SNF files for population-level SV calling in quiet mode
sniffles,sniffles_09,sniffles_09_07,expert,combine multiple SNF files population-level SV calling quiet mode
sniffles,sniffles_09,sniffles_09_08,detailed,"I have data that I need to process: combine multiple SNF files for population-level SV calling in quiet mode, utilizing multiple CPU threads for speed"
sniffles,sniffles_09,sniffles_09_09,informal,"Hey, can you help me combine multiple SNF files for population-level SV calling in quiet mode?"
sniffles,sniffles_09,sniffles_09_10,alternative,Perform: combine multiple SNF files for population-level SV calling in quiet mode
sniffles,sniffles_10,sniffles_10_01,original,call mosaic or somatic SVs with low frequency support with default parameters
sniffles,sniffles_10,sniffles_10_02,beginner,How do I call mosaic or somatic SVs with low frequency support with default parameters?
sniffles,sniffles_10,sniffles_10_03,student,I need to call mosaic or somatic SVs with low frequency support with default parameters
sniffles,sniffles_10,sniffles_10_04,polite,Please call mosaic or somatic SVs with low frequency support with default parameters
sniffles,sniffles_10,sniffles_10_05,sysadmin,Use sniffles to call mosaic or somatic SVs with low frequency support with default parameters
sniffles,sniffles_10,sniffles_10_06,goal_oriented,I want to call mosaic or somatic SVs with low frequency support with default parameters
sniffles,sniffles_10,sniffles_10_07,expert,call mosaic or somatic SVs low frequency support default parameters
sniffles,sniffles_10,sniffles_10_08,detailed,"I have data that I need to process: call mosaic or somatic SVs with low frequency support with default parameters, utilizing multiple CPU threads for speed"
sniffles,sniffles_10,sniffles_10_09,informal,"Hey, can you help me call mosaic or somatic SVs with low frequency support with default parameters?"
sniffles,sniffles_10,sniffles_10_10,alternative,"With low frequency support with default parameters, call mosaic or somatic SVs"
snpeff,snpeff_01,snpeff_01_01,original,annotate variants in a VCF file using the GRCh38 human genome database
snpeff,snpeff_01,snpeff_01_02,beginner,How do I annotate variants in a VCF file using the GRCh38 human genome database?
snpeff,snpeff_01,snpeff_01_03,student,I need to annotate variants in a VCF file using the GRCh38 human genome database
snpeff,snpeff_01,snpeff_01_04,polite,Please annotate variants in a VCF file using the GRCh38 human genome database
snpeff,snpeff_01,snpeff_01_05,sysadmin,Use snpeff to annotate variants in a VCF file using the GRCh38 human genome database
snpeff,snpeff_01,snpeff_01_06,goal_oriented,I want to annotate variants in a VCF file using the GRCh38 human genome database
snpeff,snpeff_01,snpeff_01_07,expert,annotate variants VCF file GRCh38 human genome database
snpeff,snpeff_01,snpeff_01_08,detailed,I have data that I need to process: annotate variants in a VCF file using the GRCh38 human genome database
snpeff,snpeff_01,snpeff_01_09,informal,"Hey, can you help me annotate variants in a VCF file using the GRCh38 human genome database?"
snpeff,snpeff_01,snpeff_01_10,alternative,Perform: annotate variants in a VCF file using the GRCh38 human genome database
snpeff,snpeff_02,snpeff_02_01,original,annotate variants and generate an HTML statistics report
snpeff,snpeff_02,snpeff_02_02,beginner,How do I annotate variants and generate an HTML statistics report?
snpeff,snpeff_02,snpeff_02_03,student,I need to annotate variants and generate an HTML statistics report
snpeff,snpeff_02,snpeff_02_04,polite,Please annotate variants and generate an HTML statistics report
snpeff,snpeff_02,snpeff_02_05,sysadmin,Use snpeff to annotate variants and generate an HTML statistics report
snpeff,snpeff_02,snpeff_02_06,goal_oriented,I want to annotate variants and generate an HTML statistics report
snpeff,snpeff_02,snpeff_02_07,expert,annotate variants generate HTML statistics report
snpeff,snpeff_02,snpeff_02_08,detailed,I have data that I need to process: annotate variants and generate an HTML statistics report
snpeff,snpeff_02,snpeff_02_09,informal,"Hey, can you help me annotate variants and generate an HTML statistics report?"
snpeff,snpeff_02,snpeff_02_10,alternative,Generate an HTML statistics report after annotate variants
snpeff,snpeff_03,snpeff_03_01,original,annotate variants from hg19/GRCh37 genome
snpeff,snpeff_03,snpeff_03_02,beginner,How do I annotate variants from hg19/GRCh37 genome?
snpeff,snpeff_03,snpeff_03_03,student,I need to annotate variants from hg19/GRCh37 genome
snpeff,snpeff_03,snpeff_03_04,polite,Please annotate variants from hg19/GRCh37 genome
snpeff,snpeff_03,snpeff_03_05,sysadmin,Use snpeff to annotate variants from hg19/GRCh37 genome
snpeff,snpeff_03,snpeff_03_06,goal_oriented,I want to annotate variants from hg19/GRCh37 genome
snpeff,snpeff_03,snpeff_03_07,expert,annotate variants hg19/GRCh37 genome
snpeff,snpeff_03,snpeff_03_08,detailed,I have data that I need to process: annotate variants from hg19/GRCh37 genome
snpeff,snpeff_03,snpeff_03_09,informal,"Hey, can you help me annotate variants from hg19/GRCh37 genome?"
snpeff,snpeff_03,snpeff_03_10,alternative,Perform: annotate variants from hg19/GRCh37 genome
snpeff,snpeff_04,snpeff_04_01,original,annotate variants and filter by quality for clinical reporting
snpeff,snpeff_04,snpeff_04_02,beginner,How do I annotate variants and filter by quality for clinical reporting?
snpeff,snpeff_04,snpeff_04_03,student,I need to annotate variants and filter by quality for clinical reporting
snpeff,snpeff_04,snpeff_04_04,polite,Please annotate variants and filter by quality for clinical reporting
snpeff,snpeff_04,snpeff_04_05,sysadmin,Use snpeff to annotate variants and filter by quality for clinical reporting
snpeff,snpeff_04,snpeff_04_06,goal_oriented,I want to annotate variants and filter by quality for clinical reporting
snpeff,snpeff_04,snpeff_04_07,expert,annotate variants filter by quality clinical reporting
snpeff,snpeff_04,snpeff_04_08,detailed,I have data that I need to process: annotate variants and filter by quality for clinical reporting
snpeff,snpeff_04,snpeff_04_09,informal,"Hey, can you help me annotate variants and filter by quality for clinical reporting?"
snpeff,snpeff_04,snpeff_04_10,alternative,Filter by quality for clinical reporting after annotate variants
snpeff,snpeff_05,snpeff_05_01,original,build a custom SnpEff genome database from GFF3 annotation
snpeff,snpeff_05,snpeff_05_02,beginner,How do I build a custom SnpEff genome database from GFF3 annotation?
snpeff,snpeff_05,snpeff_05_03,student,I need to build a custom SnpEff genome database from GFF3 annotation
snpeff,snpeff_05,snpeff_05_04,polite,Please build a custom SnpEff genome database from GFF3 annotation
snpeff,snpeff_05,snpeff_05_05,sysadmin,Use snpeff to build a custom SnpEff genome database from GFF3 annotation
snpeff,snpeff_05,snpeff_05_06,goal_oriented,I want to build a custom SnpEff genome database from GFF3 annotation
snpeff,snpeff_05,snpeff_05_07,expert,build custom SnpEff genome database GFF3 annotation
snpeff,snpeff_05,snpeff_05_08,detailed,I have data that I need to process: build a custom SnpEff genome database from GFF3 annotation
snpeff,snpeff_05,snpeff_05_09,informal,"Hey, can you help me build a custom SnpEff genome database from GFF3 annotation?"
snpeff,snpeff_05,snpeff_05_10,alternative,Perform: build a custom SnpEff genome database from GFF3 annotation
snpeff,snpeff_06,snpeff_06_01,original,annotate variants in a VCF file using the GRCh38 human genome database
snpeff,snpeff_06,snpeff_06_02,beginner,How do I annotate variants in a VCF file using the GRCh38 human genome database?
snpeff,snpeff_06,snpeff_06_03,student,I need to annotate variants in a VCF file using the GRCh38 human genome database
snpeff,snpeff_06,snpeff_06_04,polite,Please annotate variants in a VCF file using the GRCh38 human genome database
snpeff,snpeff_06,snpeff_06_05,sysadmin,Use snpeff to annotate variants in a VCF file using the GRCh38 human genome database
snpeff,snpeff_06,snpeff_06_06,goal_oriented,I want to annotate variants in a VCF file using the GRCh38 human genome database
snpeff,snpeff_06,snpeff_06_07,expert,annotate variants VCF file GRCh38 human genome database
snpeff,snpeff_06,snpeff_06_08,detailed,I have data that I need to process: annotate variants in a VCF file using the GRCh38 human genome database
snpeff,snpeff_06,snpeff_06_09,informal,"Hey, can you help me annotate variants in a VCF file using the GRCh38 human genome database?"
snpeff,snpeff_06,snpeff_06_10,alternative,Perform: annotate variants in a VCF file using the GRCh38 human genome database
snpeff,snpeff_07,snpeff_07_01,original,annotate variants and generate an HTML statistics report
snpeff,snpeff_07,snpeff_07_02,beginner,How do I annotate variants and generate an HTML statistics report?
snpeff,snpeff_07,snpeff_07_03,student,I need to annotate variants and generate an HTML statistics report
snpeff,snpeff_07,snpeff_07_04,polite,Please annotate variants and generate an HTML statistics report
snpeff,snpeff_07,snpeff_07_05,sysadmin,Use snpeff to annotate variants and generate an HTML statistics report
snpeff,snpeff_07,snpeff_07_06,goal_oriented,I want to annotate variants and generate an HTML statistics report
snpeff,snpeff_07,snpeff_07_07,expert,annotate variants generate HTML statistics report
snpeff,snpeff_07,snpeff_07_08,detailed,I have data that I need to process: annotate variants and generate an HTML statistics report
snpeff,snpeff_07,snpeff_07_09,informal,"Hey, can you help me annotate variants and generate an HTML statistics report?"
snpeff,snpeff_07,snpeff_07_10,alternative,Generate an HTML statistics report after annotate variants
snpeff,snpeff_08,snpeff_08_01,original,annotate variants from hg19/GRCh37 genome
snpeff,snpeff_08,snpeff_08_02,beginner,How do I annotate variants from hg19/GRCh37 genome?
snpeff,snpeff_08,snpeff_08_03,student,I need to annotate variants from hg19/GRCh37 genome
snpeff,snpeff_08,snpeff_08_04,polite,Please annotate variants from hg19/GRCh37 genome
snpeff,snpeff_08,snpeff_08_05,sysadmin,Use snpeff to annotate variants from hg19/GRCh37 genome
snpeff,snpeff_08,snpeff_08_06,goal_oriented,I want to annotate variants from hg19/GRCh37 genome
snpeff,snpeff_08,snpeff_08_07,expert,annotate variants hg19/GRCh37 genome
snpeff,snpeff_08,snpeff_08_08,detailed,I have data that I need to process: annotate variants from hg19/GRCh37 genome
snpeff,snpeff_08,snpeff_08_09,informal,"Hey, can you help me annotate variants from hg19/GRCh37 genome?"
snpeff,snpeff_08,snpeff_08_10,alternative,Perform: annotate variants from hg19/GRCh37 genome
snpeff,snpeff_09,snpeff_09_01,original,annotate variants and filter by quality for clinical reporting
snpeff,snpeff_09,snpeff_09_02,beginner,How do I annotate variants and filter by quality for clinical reporting?
snpeff,snpeff_09,snpeff_09_03,student,I need to annotate variants and filter by quality for clinical reporting
snpeff,snpeff_09,snpeff_09_04,polite,Please annotate variants and filter by quality for clinical reporting
snpeff,snpeff_09,snpeff_09_05,sysadmin,Use snpeff to annotate variants and filter by quality for clinical reporting
snpeff,snpeff_09,snpeff_09_06,goal_oriented,I want to annotate variants and filter by quality for clinical reporting
snpeff,snpeff_09,snpeff_09_07,expert,annotate variants filter by quality clinical reporting
snpeff,snpeff_09,snpeff_09_08,detailed,I have data that I need to process: annotate variants and filter by quality for clinical reporting
snpeff,snpeff_09,snpeff_09_09,informal,"Hey, can you help me annotate variants and filter by quality for clinical reporting?"
snpeff,snpeff_09,snpeff_09_10,alternative,Filter by quality for clinical reporting after annotate variants
snpeff,snpeff_10,snpeff_10_01,original,build a custom SnpEff genome database from GFF3 annotation with default parameters
snpeff,snpeff_10,snpeff_10_02,beginner,How do I build a custom SnpEff genome database from GFF3 annotation with default parameters?
snpeff,snpeff_10,snpeff_10_03,student,I need to build a custom SnpEff genome database from GFF3 annotation with default parameters
snpeff,snpeff_10,snpeff_10_04,polite,Please build a custom SnpEff genome database from GFF3 annotation with default parameters
snpeff,snpeff_10,snpeff_10_05,sysadmin,Use snpeff to build a custom SnpEff genome database from GFF3 annotation with default parameters
snpeff,snpeff_10,snpeff_10_06,goal_oriented,I want to build a custom SnpEff genome database from GFF3 annotation with default parameters
snpeff,snpeff_10,snpeff_10_07,expert,build custom SnpEff genome database GFF3 annotation default parameters
snpeff,snpeff_10,snpeff_10_08,detailed,I have data that I need to process: build a custom SnpEff genome database from GFF3 annotation with default parameters
snpeff,snpeff_10,snpeff_10_09,informal,"Hey, can you help me build a custom SnpEff genome database from GFF3 annotation with default parameters?"
snpeff,snpeff_10,snpeff_10_10,alternative,"With default parameters, build a custom SnpEff genome database from GFF3 annotation"
sourmash,sourmash_01,sourmash_01_01,original,sketch a genome FASTA file at default parameters
sourmash,sourmash_01,sourmash_01_02,beginner,How do I sketch a genome FASTA file at default parameters?
sourmash,sourmash_01,sourmash_01_03,student,I need to sketch a genome FASTA file at default parameters
sourmash,sourmash_01,sourmash_01_04,polite,Please sketch a genome FASTA file at default parameters
sourmash,sourmash_01,sourmash_01_05,sysadmin,Use sourmash to sketch a genome FASTA file at default parameters
sourmash,sourmash_01,sourmash_01_06,goal_oriented,I want to sketch a genome FASTA file at default parameters
sourmash,sourmash_01,sourmash_01_07,expert,sketch genome FASTA file at default parameters
sourmash,sourmash_01,sourmash_01_08,detailed,"I have data that I need to process: sketch a genome FASTA file at default parameters, utilizing multiple CPU threads for speed, saving the result to a specified output file"
sourmash,sourmash_01,sourmash_01_09,informal,"Hey, can you help me sketch a genome FASTA file at default parameters?"
sourmash,sourmash_01,sourmash_01_10,alternative,Perform: sketch a genome FASTA file at default parameters
sourmash,sourmash_02,sourmash_02_01,original,sketch multiple genome files and store in one database
sourmash,sourmash_02,sourmash_02_02,beginner,How do I sketch multiple genome files and store in one database?
sourmash,sourmash_02,sourmash_02_03,student,I need to sketch multiple genome files and store in one database
sourmash,sourmash_02,sourmash_02_04,polite,Please sketch multiple genome files and store in one database
sourmash,sourmash_02,sourmash_02_05,sysadmin,Use sourmash to sketch multiple genome files and store in one database
sourmash,sourmash_02,sourmash_02_06,goal_oriented,I want to sketch multiple genome files and store in one database
sourmash,sourmash_02,sourmash_02_07,expert,sketch multiple genome files store one database
sourmash,sourmash_02,sourmash_02_08,detailed,"I have data that I need to process: sketch multiple genome files and store in one database, utilizing multiple CPU threads for speed, saving the result to a specified output file"
sourmash,sourmash_02,sourmash_02_09,informal,"Hey, can you help me sketch multiple genome files and store in one database?"
sourmash,sourmash_02,sourmash_02_10,alternative,Store in one database after sketch multiple genome files
sourmash,sourmash_03,sourmash_03_01,original,compare all signatures in a directory and output similarity matrix
sourmash,sourmash_03,sourmash_03_02,beginner,How do I compare all signatures in a directory and output similarity matrix?
sourmash,sourmash_03,sourmash_03_03,student,I need to compare all signatures in a directory and output similarity matrix
sourmash,sourmash_03,sourmash_03_04,polite,Please compare all signatures in a directory and output similarity matrix
sourmash,sourmash_03,sourmash_03_05,sysadmin,Use sourmash to compare all signatures in a directory and output similarity matrix
sourmash,sourmash_03,sourmash_03_06,goal_oriented,I want to compare all signatures in a directory and output similarity matrix
sourmash,sourmash_03,sourmash_03_07,expert,compare all signatures directory output similarity matrix
sourmash,sourmash_03,sourmash_03_08,detailed,I have data that I need to process: compare all signatures in a directory and output similarity matrix
sourmash,sourmash_03,sourmash_03_09,informal,"Hey, can you help me compare all signatures in a directory and output similarity matrix?"
sourmash,sourmash_03,sourmash_03_10,alternative,Output similarity matrix after compare all signatures in a directory
sourmash,sourmash_04,sourmash_04_01,original,decompose a metagenome sample against a reference database
sourmash,sourmash_04,sourmash_04_02,beginner,How do I decompose a metagenome sample against a reference database?
sourmash,sourmash_04,sourmash_04_03,student,I need to decompose a metagenome sample against a reference database
sourmash,sourmash_04,sourmash_04_04,polite,Please decompose a metagenome sample against a reference database
sourmash,sourmash_04,sourmash_04_05,sysadmin,Use sourmash to decompose a metagenome sample against a reference database
sourmash,sourmash_04,sourmash_04_06,goal_oriented,I want to decompose a metagenome sample against a reference database
sourmash,sourmash_04,sourmash_04_07,expert,decompose metagenome sample against reference database
sourmash,sourmash_04,sourmash_04_08,detailed,"I have data that I need to process: decompose a metagenome sample against a reference database, saving the result to a specified output file"
sourmash,sourmash_04,sourmash_04_09,informal,"Hey, can you help me decompose a metagenome sample against a reference database?"
sourmash,sourmash_04,sourmash_04_10,alternative,Perform: decompose a metagenome sample against a reference database
sourmash,sourmash_05,sourmash_05_01,original,add taxonomy to gather results
sourmash,sourmash_05,sourmash_05_02,beginner,How do I add taxonomy to gather results?
sourmash,sourmash_05,sourmash_05_03,student,I need to add taxonomy to gather results
sourmash,sourmash_05,sourmash_05_04,polite,Please add taxonomy to gather results
sourmash,sourmash_05,sourmash_05_05,sysadmin,Use sourmash to add taxonomy to gather results
sourmash,sourmash_05,sourmash_05_06,goal_oriented,I want to add taxonomy to gather results
sourmash,sourmash_05,sourmash_05_07,expert,add taxonomy gather results
sourmash,sourmash_05,sourmash_05_08,detailed,"I have data that I need to process: add taxonomy to gather results, utilizing multiple CPU threads for speed, saving the result to a specified output file"
sourmash,sourmash_05,sourmash_05_09,informal,"Hey, can you help me add taxonomy to gather results?"
sourmash,sourmash_05,sourmash_05_10,alternative,Output gather results by performing: add taxonomy
sourmash,sourmash_06,sourmash_06_01,original,search a signature against a database for top hits
sourmash,sourmash_06,sourmash_06_02,beginner,How do I search a signature against a database for top hits?
sourmash,sourmash_06,sourmash_06_03,student,I need to search a signature against a database for top hits
sourmash,sourmash_06,sourmash_06_04,polite,Please search a signature against a database for top hits
sourmash,sourmash_06,sourmash_06_05,sysadmin,Use sourmash to search a signature against a database for top hits
sourmash,sourmash_06,sourmash_06_06,goal_oriented,I want to search a signature against a database for top hits
sourmash,sourmash_06,sourmash_06_07,expert,search signature against database top hits
sourmash,sourmash_06,sourmash_06_08,detailed,"I have data that I need to process: search a signature against a database for top hits, saving the result to a specified output file"
sourmash,sourmash_06,sourmash_06_09,informal,"Hey, can you help me search a signature against a database for top hits?"
sourmash,sourmash_06,sourmash_06_10,alternative,Perform: search a signature against a database for top hits
sourmash,sourmash_07,sourmash_07_01,original,build an indexed database from many signature files for fast search
sourmash,sourmash_07,sourmash_07_02,beginner,How do I build an indexed database from many signature files for fast search?
sourmash,sourmash_07,sourmash_07_03,student,I need to build an indexed database from many signature files for fast search
sourmash,sourmash_07,sourmash_07_04,polite,Please build an indexed database from many signature files for fast search
sourmash,sourmash_07,sourmash_07_05,sysadmin,Use sourmash to build an indexed database from many signature files for fast search
sourmash,sourmash_07,sourmash_07_06,goal_oriented,I want to build an indexed database from many signature files for fast search
sourmash,sourmash_07,sourmash_07_07,expert,build indexed database many signature files fast search
sourmash,sourmash_07,sourmash_07_08,detailed,I have data that I need to process: build an indexed database from many signature files for fast search
sourmash,sourmash_07,sourmash_07_09,informal,"Hey, can you help me build an indexed database from many signature files for fast search?"
sourmash,sourmash_07,sourmash_07_10,alternative,Perform: build an indexed database from many signature files for fast search
sourmash,sourmash_08,sourmash_08_01,original,sketch a genome FASTA file at default parameters and write output to a file
sourmash,sourmash_08,sourmash_08_02,beginner,How do I sketch a genome FASTA file at default parameters and write output to a file?
sourmash,sourmash_08,sourmash_08_03,student,I need to sketch a genome FASTA file at default parameters and write output to a file
sourmash,sourmash_08,sourmash_08_04,polite,Please sketch a genome FASTA file at default parameters and write output to a file
sourmash,sourmash_08,sourmash_08_05,sysadmin,Use sourmash to sketch a genome FASTA file at default parameters and write output to a file
sourmash,sourmash_08,sourmash_08_06,goal_oriented,I want to sketch a genome FASTA file at default parameters and write output to a file
sourmash,sourmash_08,sourmash_08_07,expert,sketch genome FASTA file at default parameters write output file
sourmash,sourmash_08,sourmash_08_08,detailed,"I have data that I need to process: sketch a genome FASTA file at default parameters and write output to a file, utilizing multiple CPU threads for speed, saving the result to a specified output file"
sourmash,sourmash_08,sourmash_08_09,informal,"Hey, can you help me sketch a genome FASTA file at default parameters and write output to a file?"
sourmash,sourmash_08,sourmash_08_10,alternative,Write output to a file after sketch a genome FASTA file at default parameters
sourmash,sourmash_09,sourmash_09_01,original,sketch multiple genome files and store in one database in quiet mode
sourmash,sourmash_09,sourmash_09_02,beginner,How do I sketch multiple genome files and store in one database in quiet mode?
sourmash,sourmash_09,sourmash_09_03,student,I need to sketch multiple genome files and store in one database in quiet mode
sourmash,sourmash_09,sourmash_09_04,polite,Please sketch multiple genome files and store in one database in quiet mode
sourmash,sourmash_09,sourmash_09_05,sysadmin,Use sourmash to sketch multiple genome files and store in one database in quiet mode
sourmash,sourmash_09,sourmash_09_06,goal_oriented,I want to sketch multiple genome files and store in one database in quiet mode
sourmash,sourmash_09,sourmash_09_07,expert,sketch multiple genome files store one database quiet mode
sourmash,sourmash_09,sourmash_09_08,detailed,"I have data that I need to process: sketch multiple genome files and store in one database in quiet mode, utilizing multiple CPU threads for speed, saving the result to a specified output file"
sourmash,sourmash_09,sourmash_09_09,informal,"Hey, can you help me sketch multiple genome files and store in one database in quiet mode?"
sourmash,sourmash_09,sourmash_09_10,alternative,Store in one database in quiet mode after sketch multiple genome files
sourmash,sourmash_10,sourmash_10_01,original,compare all signatures in a directory and output similarity matrix with default parameters
sourmash,sourmash_10,sourmash_10_02,beginner,How do I compare all signatures in a directory and output similarity matrix with default parameters?
sourmash,sourmash_10,sourmash_10_03,student,I need to compare all signatures in a directory and output similarity matrix with default parameters
sourmash,sourmash_10,sourmash_10_04,polite,Please compare all signatures in a directory and output similarity matrix with default parameters
sourmash,sourmash_10,sourmash_10_05,sysadmin,Use sourmash to compare all signatures in a directory and output similarity matrix with default parameters
sourmash,sourmash_10,sourmash_10_06,goal_oriented,I want to compare all signatures in a directory and output similarity matrix with default parameters
sourmash,sourmash_10,sourmash_10_07,expert,compare all signatures directory output similarity matrix default parameters
sourmash,sourmash_10,sourmash_10_08,detailed,I have data that I need to process: compare all signatures in a directory and output similarity matrix with default parameters
sourmash,sourmash_10,sourmash_10_09,informal,"Hey, can you help me compare all signatures in a directory and output similarity matrix with default parameters?"
sourmash,sourmash_10,sourmash_10_10,alternative,Output similarity matrix with default parameters after compare all signatures in a directory
spades,spades_01,spades_01_01,original,assemble a bacterial genome from paired-end reads
spades,spades_01,spades_01_02,beginner,How do I assemble a bacterial genome from paired-end reads?
spades,spades_01,spades_01_03,student,I need to assemble a bacterial genome from paired-end reads
spades,spades_01,spades_01_04,polite,Please assemble a bacterial genome from paired-end reads
spades,spades_01,spades_01_05,sysadmin,Use spades to assemble a bacterial genome from paired-end reads
spades,spades_01,spades_01_06,goal_oriented,I want to assemble a bacterial genome from paired-end reads
spades,spades_01,spades_01_07,expert,assemble bacterial genome paired-end reads
spades,spades_01,spades_01_08,detailed,"I have data that I need to process: assemble a bacterial genome from paired-end reads, utilizing multiple CPU threads for speed, saving the result to a specified output file"
spades,spades_01,spades_01_09,informal,"Hey, can you help me assemble a bacterial genome from paired-end reads?"
spades,spades_01,spades_01_10,alternative,Perform: assemble a bacterial genome from paired-end reads
spades,spades_02,spades_02_01,original,assemble a metagenome from paired-end reads
spades,spades_02,spades_02_02,beginner,How do I assemble a metagenome from paired-end reads?
spades,spades_02,spades_02_03,student,I need to assemble a metagenome from paired-end reads
spades,spades_02,spades_02_04,polite,Please assemble a metagenome from paired-end reads
spades,spades_02,spades_02_05,sysadmin,Use spades to assemble a metagenome from paired-end reads
spades,spades_02,spades_02_06,goal_oriented,I want to assemble a metagenome from paired-end reads
spades,spades_02,spades_02_07,expert,assemble metagenome paired-end reads
spades,spades_02,spades_02_08,detailed,"I have data that I need to process: assemble a metagenome from paired-end reads, utilizing multiple CPU threads for speed, saving the result to a specified output file"
spades,spades_02,spades_02_09,informal,"Hey, can you help me assemble a metagenome from paired-end reads?"
spades,spades_02,spades_02_10,alternative,Perform: assemble a metagenome from paired-end reads
spades,spades_03,spades_03_01,original,assemble plasmids from paired-end reads
spades,spades_03,spades_03_02,beginner,How do I assemble plasmids from paired-end reads?
spades,spades_03,spades_03_03,student,I need to assemble plasmids from paired-end reads
spades,spades_03,spades_03_04,polite,Please assemble plasmids from paired-end reads
spades,spades_03,spades_03_05,sysadmin,Use spades to assemble plasmids from paired-end reads
spades,spades_03,spades_03_06,goal_oriented,I want to assemble plasmids from paired-end reads
spades,spades_03,spades_03_07,expert,assemble plasmids paired-end reads
spades,spades_03,spades_03_08,detailed,"I have data that I need to process: assemble plasmids from paired-end reads, utilizing multiple CPU threads for speed, saving the result to a specified output file"
spades,spades_03,spades_03_09,informal,"Hey, can you help me assemble plasmids from paired-end reads?"
spades,spades_03,spades_03_10,alternative,Perform: assemble plasmids from paired-end reads
spades,spades_04,spades_04_01,original,assemble single-cell MDA amplified data
spades,spades_04,spades_04_02,beginner,How do I assemble single-cell MDA amplified data?
spades,spades_04,spades_04_03,student,I need to assemble single-cell MDA amplified data
spades,spades_04,spades_04_04,polite,Please assemble single-cell MDA amplified data
spades,spades_04,spades_04_05,sysadmin,Use spades to assemble single-cell MDA amplified data
spades,spades_04,spades_04_06,goal_oriented,I want to assemble single-cell MDA amplified data
spades,spades_04,spades_04_07,expert,assemble single-cell MDA amplified data
spades,spades_04,spades_04_08,detailed,"I have data that I need to process: assemble single-cell MDA amplified data, utilizing multiple CPU threads for speed, saving the result to a specified output file"
spades,spades_04,spades_04_09,informal,"Hey, can you help me assemble single-cell MDA amplified data?"
spades,spades_04,spades_04_10,alternative,Perform: assemble single-cell MDA amplified data
spades,spades_05,spades_05_01,original,resume interrupted SPAdes assembly
spades,spades_05,spades_05_02,beginner,How do I resume interrupted SPAdes assembly?
spades,spades_05,spades_05_03,student,I need to resume interrupted SPAdes assembly
spades,spades_05,spades_05_04,polite,Please resume interrupted SPAdes assembly
spades,spades_05,spades_05_05,sysadmin,Use spades to resume interrupted SPAdes assembly
spades,spades_05,spades_05_06,goal_oriented,I want to resume interrupted SPAdes assembly
spades,spades_05,spades_05_07,expert,resume interrupted SPAdes assembly
spades,spades_05,spades_05_08,detailed,"I have data that I need to process: resume interrupted SPAdes assembly, saving the result to a specified output file"
spades,spades_05,spades_05_09,informal,"Hey, can you help me resume interrupted SPAdes assembly?"
spades,spades_05,spades_05_10,alternative,Perform: resume interrupted SPAdes assembly
spades,spades_06,spades_06_01,original,assemble with both paired-end and long reads (hybrid assembly)
spades,spades_06,spades_06_02,beginner,How do I assemble with both paired-end and long reads (hybrid assembly)?
spades,spades_06,spades_06_03,student,I need to assemble with both paired-end and long reads (hybrid assembly)
spades,spades_06,spades_06_04,polite,Please assemble with both paired-end and long reads (hybrid assembly)
spades,spades_06,spades_06_05,sysadmin,Use spades to assemble with both paired-end and long reads (hybrid assembly)
spades,spades_06,spades_06_06,goal_oriented,I want to assemble with both paired-end and long reads (hybrid assembly)
spades,spades_06,spades_06_07,expert,assemble both paired-end long reads (hybrid assembly)
spades,spades_06,spades_06_08,detailed,"I have data that I need to process: assemble with both paired-end and long reads (hybrid assembly), utilizing multiple CPU threads for speed, saving the result to a specified output file"
spades,spades_06,spades_06_09,informal,"Hey, can you help me assemble with both paired-end and long reads (hybrid assembly)?"
spades,spades_06,spades_06_10,alternative,Long reads (hybrid assembly) after assemble with both paired-end
spades,spades_07,spades_07_01,original,assemble a bacterial genome from paired-end reads using multiple threads
spades,spades_07,spades_07_02,beginner,How do I assemble a bacterial genome from paired-end reads using multiple threads?
spades,spades_07,spades_07_03,student,I need to assemble a bacterial genome from paired-end reads using multiple threads
spades,spades_07,spades_07_04,polite,Please assemble a bacterial genome from paired-end reads using multiple threads
spades,spades_07,spades_07_05,sysadmin,Use spades to assemble a bacterial genome from paired-end reads using multiple threads
spades,spades_07,spades_07_06,goal_oriented,I want to assemble a bacterial genome from paired-end reads using multiple threads
spades,spades_07,spades_07_07,expert,assemble bacterial genome paired-end reads multiple threads
spades,spades_07,spades_07_08,detailed,"I have data that I need to process: assemble a bacterial genome from paired-end reads using multiple threads, utilizing multiple CPU threads for speed, saving the result to a specified output file"
spades,spades_07,spades_07_09,informal,"Hey, can you help me assemble a bacterial genome from paired-end reads using multiple threads?"
spades,spades_07,spades_07_10,alternative,Perform: assemble a bacterial genome from paired-end reads using multiple threads
spades,spades_08,spades_08_01,original,assemble a metagenome from paired-end reads and write output to a file
spades,spades_08,spades_08_02,beginner,How do I assemble a metagenome from paired-end reads and write output to a file?
spades,spades_08,spades_08_03,student,I need to assemble a metagenome from paired-end reads and write output to a file
spades,spades_08,spades_08_04,polite,Please assemble a metagenome from paired-end reads and write output to a file
spades,spades_08,spades_08_05,sysadmin,Use spades to assemble a metagenome from paired-end reads and write output to a file
spades,spades_08,spades_08_06,goal_oriented,I want to assemble a metagenome from paired-end reads and write output to a file
spades,spades_08,spades_08_07,expert,assemble metagenome paired-end reads write output file
spades,spades_08,spades_08_08,detailed,"I have data that I need to process: assemble a metagenome from paired-end reads and write output to a file, utilizing multiple CPU threads for speed, saving the result to a specified output file"
spades,spades_08,spades_08_09,informal,"Hey, can you help me assemble a metagenome from paired-end reads and write output to a file?"
spades,spades_08,spades_08_10,alternative,Write output to a file after assemble a metagenome from paired-end reads
spades,spades_09,spades_09_01,original,assemble plasmids from paired-end reads in quiet mode
spades,spades_09,spades_09_02,beginner,How do I assemble plasmids from paired-end reads in quiet mode?
spades,spades_09,spades_09_03,student,I need to assemble plasmids from paired-end reads in quiet mode
spades,spades_09,spades_09_04,polite,Please assemble plasmids from paired-end reads in quiet mode
spades,spades_09,spades_09_05,sysadmin,Use spades to assemble plasmids from paired-end reads in quiet mode
spades,spades_09,spades_09_06,goal_oriented,I want to assemble plasmids from paired-end reads in quiet mode
spades,spades_09,spades_09_07,expert,assemble plasmids paired-end reads quiet mode
spades,spades_09,spades_09_08,detailed,"I have data that I need to process: assemble plasmids from paired-end reads in quiet mode, utilizing multiple CPU threads for speed, saving the result to a specified output file"
spades,spades_09,spades_09_09,informal,"Hey, can you help me assemble plasmids from paired-end reads in quiet mode?"
spades,spades_09,spades_09_10,alternative,Perform: assemble plasmids from paired-end reads in quiet mode
spades,spades_10,spades_10_01,original,assemble single-cell MDA amplified data with default parameters
spades,spades_10,spades_10_02,beginner,How do I assemble single-cell MDA amplified data with default parameters?
spades,spades_10,spades_10_03,student,I need to assemble single-cell MDA amplified data with default parameters
spades,spades_10,spades_10_04,polite,Please assemble single-cell MDA amplified data with default parameters
spades,spades_10,spades_10_05,sysadmin,Use spades to assemble single-cell MDA amplified data with default parameters
spades,spades_10,spades_10_06,goal_oriented,I want to assemble single-cell MDA amplified data with default parameters
spades,spades_10,spades_10_07,expert,assemble single-cell MDA amplified data default parameters
spades,spades_10,spades_10_08,detailed,"I have data that I need to process: assemble single-cell MDA amplified data with default parameters, utilizing multiple CPU threads for speed, saving the result to a specified output file"
spades,spades_10,spades_10_09,informal,"Hey, can you help me assemble single-cell MDA amplified data with default parameters?"
spades,spades_10,spades_10_10,alternative,"With default parameters, assemble single-cell MDA amplified data"
sra-tools,sra-tools_01,sra-tools_01_01,original,download and convert an SRA accession to FASTQ
sra-tools,sra-tools_01,sra-tools_01_02,beginner,How do I download and convert an SRA accession to FASTQ?
sra-tools,sra-tools_01,sra-tools_01_03,student,I need to download and convert an SRA accession to FASTQ
sra-tools,sra-tools_01,sra-tools_01_04,polite,Please download and convert an SRA accession to FASTQ
sra-tools,sra-tools_01,sra-tools_01_05,sysadmin,Use sra-tools to download and convert an SRA accession to FASTQ
sra-tools,sra-tools_01,sra-tools_01_06,goal_oriented,I want to download and convert an SRA accession to FASTQ
sra-tools,sra-tools_01,sra-tools_01_07,expert,download convert SRA accession FASTQ
sra-tools,sra-tools_01,sra-tools_01_08,detailed,I have data that I need to process: download and convert an SRA accession to FASTQ
sra-tools,sra-tools_01,sra-tools_01_09,informal,"Hey, can you help me download and convert an SRA accession to FASTQ?"
sra-tools,sra-tools_01,sra-tools_01_10,alternative,Convert an SRA accession to FASTQ after download
sra-tools,sra-tools_02,sra-tools_02_01,original,download SRA file first then convert (more reliable)
sra-tools,sra-tools_02,sra-tools_02_02,beginner,How do I download SRA file first then convert (more reliable)?
sra-tools,sra-tools_02,sra-tools_02_03,student,I need to download SRA file first then convert (more reliable)
sra-tools,sra-tools_02,sra-tools_02_04,polite,Please download SRA file first then convert (more reliable)
sra-tools,sra-tools_02,sra-tools_02_05,sysadmin,Use sra-tools to download SRA file first then convert (more reliable)
sra-tools,sra-tools_02,sra-tools_02_06,goal_oriented,I want to download SRA file first then convert (more reliable)
sra-tools,sra-tools_02,sra-tools_02_07,expert,download SRA file first then convert (more reliable)
sra-tools,sra-tools_02,sra-tools_02_08,detailed,I have data that I need to process: download SRA file first then convert (more reliable)
sra-tools,sra-tools_02,sra-tools_02_09,informal,"Hey, can you help me download SRA file first then convert (more reliable)?"
sra-tools,sra-tools_02,sra-tools_02_10,alternative,Perform: download SRA file first then convert (more reliable)
sra-tools,sra-tools_03,sra-tools_03_01,original,download multiple SRA accessions in batch
sra-tools,sra-tools_03,sra-tools_03_02,beginner,How do I download multiple SRA accessions in batch?
sra-tools,sra-tools_03,sra-tools_03_03,student,I need to download multiple SRA accessions in batch
sra-tools,sra-tools_03,sra-tools_03_04,polite,Please download multiple SRA accessions in batch
sra-tools,sra-tools_03,sra-tools_03_05,sysadmin,Use sra-tools to download multiple SRA accessions in batch
sra-tools,sra-tools_03,sra-tools_03_06,goal_oriented,I want to download multiple SRA accessions in batch
sra-tools,sra-tools_03,sra-tools_03_07,expert,download multiple SRA accessions batch
sra-tools,sra-tools_03,sra-tools_03_08,detailed,I have data that I need to process: download multiple SRA accessions in batch
sra-tools,sra-tools_03,sra-tools_03_09,informal,"Hey, can you help me download multiple SRA accessions in batch?"
sra-tools,sra-tools_03,sra-tools_03_10,alternative,Perform: download multiple SRA accessions in batch
sra-tools,sra-tools_04,sra-tools_04_01,original,convert SRA to compressed FASTQ
sra-tools,sra-tools_04,sra-tools_04_02,beginner,How do I convert SRA to compressed FASTQ?
sra-tools,sra-tools_04,sra-tools_04_03,student,I need to convert SRA to compressed FASTQ
sra-tools,sra-tools_04,sra-tools_04_04,polite,Please convert SRA to compressed FASTQ
sra-tools,sra-tools_04,sra-tools_04_05,sysadmin,Use sra-tools to convert SRA to compressed FASTQ
sra-tools,sra-tools_04,sra-tools_04_06,goal_oriented,I want to convert SRA to compressed FASTQ
sra-tools,sra-tools_04,sra-tools_04_07,expert,convert SRA compressed FASTQ
sra-tools,sra-tools_04,sra-tools_04_08,detailed,I have data that I need to process: convert SRA to compressed FASTQ
sra-tools,sra-tools_04,sra-tools_04_09,informal,"Hey, can you help me convert SRA to compressed FASTQ?"
sra-tools,sra-tools_04,sra-tools_04_10,alternative,Output compressed FASTQ by performing: convert SRA
sra-tools,sra-tools_05,sra-tools_05_01,original,validate an SRA file integrity
sra-tools,sra-tools_05,sra-tools_05_02,beginner,How do I validate an SRA file integrity?
sra-tools,sra-tools_05,sra-tools_05_03,student,I need to validate an SRA file integrity
sra-tools,sra-tools_05,sra-tools_05_04,polite,Please validate an SRA file integrity
sra-tools,sra-tools_05,sra-tools_05_05,sysadmin,Use sra-tools to validate an SRA file integrity
sra-tools,sra-tools_05,sra-tools_05_06,goal_oriented,I want to validate an SRA file integrity
sra-tools,sra-tools_05,sra-tools_05_07,expert,validate SRA file integrity
sra-tools,sra-tools_05,sra-tools_05_08,detailed,I have data that I need to process: validate an SRA file integrity
sra-tools,sra-tools_05,sra-tools_05_09,informal,"Hey, can you help me validate an SRA file integrity?"
sra-tools,sra-tools_05,sra-tools_05_10,alternative,Perform: validate an SRA file integrity
sra-tools,sra-tools_06,sra-tools_06_01,original,get statistics for an SRA run without downloading reads
sra-tools,sra-tools_06,sra-tools_06_02,beginner,How do I get statistics for an SRA run without downloading reads?
sra-tools,sra-tools_06,sra-tools_06_03,student,I need to get statistics for an SRA run without downloading reads
sra-tools,sra-tools_06,sra-tools_06_04,polite,Please get statistics for an SRA run without downloading reads
sra-tools,sra-tools_06,sra-tools_06_05,sysadmin,Use sra-tools to get statistics for an SRA run without downloading reads
sra-tools,sra-tools_06,sra-tools_06_06,goal_oriented,I want to get statistics for an SRA run without downloading reads
sra-tools,sra-tools_06,sra-tools_06_07,expert,get statistics SRA run without downloading reads
sra-tools,sra-tools_06,sra-tools_06_08,detailed,I have data that I need to process: get statistics for an SRA run without downloading reads
sra-tools,sra-tools_06,sra-tools_06_09,informal,"Hey, can you help me get statistics for an SRA run without downloading reads?"
sra-tools,sra-tools_06,sra-tools_06_10,alternative,Perform: get statistics for an SRA run without downloading reads
sra-tools,sra-tools_07,sra-tools_07_01,original,download an ENA/EBI accession using prefetch
sra-tools,sra-tools_07,sra-tools_07_02,beginner,How do I download an ENA/EBI accession using prefetch?
sra-tools,sra-tools_07,sra-tools_07_03,student,I need to download an ENA/EBI accession using prefetch
sra-tools,sra-tools_07,sra-tools_07_04,polite,Please download an ENA/EBI accession using prefetch
sra-tools,sra-tools_07,sra-tools_07_05,sysadmin,Use sra-tools to download an ENA/EBI accession using prefetch
sra-tools,sra-tools_07,sra-tools_07_06,goal_oriented,I want to download an ENA/EBI accession using prefetch
sra-tools,sra-tools_07,sra-tools_07_07,expert,download ENA/EBI accession prefetch
sra-tools,sra-tools_07,sra-tools_07_08,detailed,I have data that I need to process: download an ENA/EBI accession using prefetch
sra-tools,sra-tools_07,sra-tools_07_09,informal,"Hey, can you help me download an ENA/EBI accession using prefetch?"
sra-tools,sra-tools_07,sra-tools_07_10,alternative,Perform: download an ENA/EBI accession using prefetch
sra-tools,sra-tools_08,sra-tools_08_01,original,list all reads in an SRA file
sra-tools,sra-tools_08,sra-tools_08_02,beginner,How do I list all reads in an SRA file?
sra-tools,sra-tools_08,sra-tools_08_03,student,I need to list all reads in an SRA file
sra-tools,sra-tools_08,sra-tools_08_04,polite,Please list all reads in an SRA file
sra-tools,sra-tools_08,sra-tools_08_05,sysadmin,Use sra-tools to list all reads in an SRA file
sra-tools,sra-tools_08,sra-tools_08_06,goal_oriented,I want to list all reads in an SRA file
sra-tools,sra-tools_08,sra-tools_08_07,expert,list all reads SRA file
sra-tools,sra-tools_08,sra-tools_08_08,detailed,I have data that I need to process: list all reads in an SRA file
sra-tools,sra-tools_08,sra-tools_08_09,informal,"Hey, can you help me list all reads in an SRA file?"
sra-tools,sra-tools_08,sra-tools_08_10,alternative,Perform: list all reads in an SRA file
sra-tools,sra-tools_09,sra-tools_09_01,original,check available disk space before a large download
sra-tools,sra-tools_09,sra-tools_09_02,beginner,How do I check available disk space before a large download?
sra-tools,sra-tools_09,sra-tools_09_03,student,I need to check available disk space before a large download
sra-tools,sra-tools_09,sra-tools_09_04,polite,Please check available disk space before a large download
sra-tools,sra-tools_09,sra-tools_09_05,sysadmin,Use sra-tools to check available disk space before a large download
sra-tools,sra-tools_09,sra-tools_09_06,goal_oriented,I want to check available disk space before a large download
sra-tools,sra-tools_09,sra-tools_09_07,expert,check available disk space before large download
sra-tools,sra-tools_09,sra-tools_09_08,detailed,I have data that I need to process: check available disk space before a large download
sra-tools,sra-tools_09,sra-tools_09_09,informal,"Hey, can you help me check available disk space before a large download?"
sra-tools,sra-tools_09,sra-tools_09_10,alternative,Perform: check available disk space before a large download
sra-tools,sra-tools_10,sra-tools_10_01,original,download a single-end SRA accession and skip technical reads
sra-tools,sra-tools_10,sra-tools_10_02,beginner,How do I download a single-end SRA accession and skip technical reads?
sra-tools,sra-tools_10,sra-tools_10_03,student,I need to download a single-end SRA accession and skip technical reads
sra-tools,sra-tools_10,sra-tools_10_04,polite,Please download a single-end SRA accession and skip technical reads
sra-tools,sra-tools_10,sra-tools_10_05,sysadmin,Use sra-tools to download a single-end SRA accession and skip technical reads
sra-tools,sra-tools_10,sra-tools_10_06,goal_oriented,I want to download a single-end SRA accession and skip technical reads
sra-tools,sra-tools_10,sra-tools_10_07,expert,download single-end SRA accession skip technical reads
sra-tools,sra-tools_10,sra-tools_10_08,detailed,I have data that I need to process: download a single-end SRA accession and skip technical reads
sra-tools,sra-tools_10,sra-tools_10_09,informal,"Hey, can you help me download a single-end SRA accession and skip technical reads?"
sra-tools,sra-tools_10,sra-tools_10_10,alternative,Skip technical reads after download a single-end SRA accession
ssh,ssh_01,ssh_01_01,original,connect to a remote server as a specific user
ssh,ssh_01,ssh_01_02,beginner,How do I connect to a remote server as a specific user?
ssh,ssh_01,ssh_01_03,student,I need to connect to a remote server as a specific user
ssh,ssh_01,ssh_01_04,polite,Please connect to a remote server as a specific user
ssh,ssh_01,ssh_01_05,sysadmin,Use ssh to connect to a remote server as a specific user
ssh,ssh_01,ssh_01_06,goal_oriented,I want to connect to a remote server as a specific user
ssh,ssh_01,ssh_01_07,expert,connect remote server as specific user
ssh,ssh_01,ssh_01_08,detailed,I have data that I need to process: connect to a remote server as a specific user
ssh,ssh_01,ssh_01_09,informal,"Hey, can you help me connect to a remote server as a specific user?"
ssh,ssh_01,ssh_01_10,alternative,Output a remote server as a specific user by performing: connect
ssh,ssh_02,ssh_02_01,original,connect using a specific private key file
ssh,ssh_02,ssh_02_02,beginner,How do I connect using a specific private key file?
ssh,ssh_02,ssh_02_03,student,I need to connect using a specific private key file
ssh,ssh_02,ssh_02_04,polite,Please connect using a specific private key file
ssh,ssh_02,ssh_02_05,sysadmin,Use ssh to connect using a specific private key file
ssh,ssh_02,ssh_02_06,goal_oriented,I want to connect using a specific private key file
ssh,ssh_02,ssh_02_07,expert,connect specific private key file
ssh,ssh_02,ssh_02_08,detailed,I have data that I need to process: connect using a specific private key file
ssh,ssh_02,ssh_02_09,informal,"Hey, can you help me connect using a specific private key file?"
ssh,ssh_02,ssh_02_10,alternative,Perform: connect using a specific private key file
ssh,ssh_03,ssh_03_01,original,connect on a non-standard port
ssh,ssh_03,ssh_03_02,beginner,How do I connect on a non-standard port?
ssh,ssh_03,ssh_03_03,student,I need to connect on a non-standard port
ssh,ssh_03,ssh_03_04,polite,Please connect on a non-standard port
ssh,ssh_03,ssh_03_05,sysadmin,Use ssh to connect on a non-standard port
ssh,ssh_03,ssh_03_06,goal_oriented,I want to connect on a non-standard port
ssh,ssh_03,ssh_03_07,expert,connect on non-standard port
ssh,ssh_03,ssh_03_08,detailed,"I have data that I need to process: connect on a non-standard port, utilizing multiple CPU threads for speed"
ssh,ssh_03,ssh_03_09,informal,"Hey, can you help me connect on a non-standard port?"
ssh,ssh_03,ssh_03_10,alternative,Perform: connect on a non-standard port
ssh,ssh_04,ssh_04_01,original,forward a local port to a remote service (local port forwarding)
ssh,ssh_04,ssh_04_02,beginner,How do I forward a local port to a remote service (local port forwarding)?
ssh,ssh_04,ssh_04_03,student,I need to forward a local port to a remote service (local port forwarding)
ssh,ssh_04,ssh_04_04,polite,Please forward a local port to a remote service (local port forwarding)
ssh,ssh_04,ssh_04_05,sysadmin,Use ssh to forward a local port to a remote service (local port forwarding)
ssh,ssh_04,ssh_04_06,goal_oriented,I want to forward a local port to a remote service (local port forwarding)
ssh,ssh_04,ssh_04_07,expert,forward local port remote service (local port forwarding)
ssh,ssh_04,ssh_04_08,detailed,I have data that I need to process: forward a local port to a remote service (local port forwarding)
ssh,ssh_04,ssh_04_09,informal,"Hey, can you help me forward a local port to a remote service (local port forwarding)?"
ssh,ssh_04,ssh_04_10,alternative,Output a remote service (local port forwarding) by performing: forward a local port
ssh,ssh_05,ssh_05_01,original,run a command on a remote host without an interactive shell
ssh,ssh_05,ssh_05_02,beginner,How do I run a command on a remote host without an interactive shell?
ssh,ssh_05,ssh_05_03,student,I need to run a command on a remote host without an interactive shell
ssh,ssh_05,ssh_05_04,polite,Please run a command on a remote host without an interactive shell
ssh,ssh_05,ssh_05_05,sysadmin,Use ssh to run a command on a remote host without an interactive shell
ssh,ssh_05,ssh_05_06,goal_oriented,I want to run a command on a remote host without an interactive shell
ssh,ssh_05,ssh_05_07,expert,run command on remote host without interactive shell
ssh,ssh_05,ssh_05_08,detailed,I have data that I need to process: run a command on a remote host without an interactive shell
ssh,ssh_05,ssh_05_09,informal,"Hey, can you help me run a command on a remote host without an interactive shell?"
ssh,ssh_05,ssh_05_10,alternative,Perform: run a command on a remote host without an interactive shell
ssh,ssh_06,ssh_06_01,original,enable X11 forwarding to run graphical applications remotely
ssh,ssh_06,ssh_06_02,beginner,How do I enable X11 forwarding to run graphical applications remotely?
ssh,ssh_06,ssh_06_03,student,I need to enable X11 forwarding to run graphical applications remotely
ssh,ssh_06,ssh_06_04,polite,Please enable X11 forwarding to run graphical applications remotely
ssh,ssh_06,ssh_06_05,sysadmin,Use ssh to enable X11 forwarding to run graphical applications remotely
ssh,ssh_06,ssh_06_06,goal_oriented,I want to enable X11 forwarding to run graphical applications remotely
ssh,ssh_06,ssh_06_07,expert,enable X11 forwarding run graphical applications remotely
ssh,ssh_06,ssh_06_08,detailed,I have data that I need to process: enable X11 forwarding to run graphical applications remotely
ssh,ssh_06,ssh_06_09,informal,"Hey, can you help me enable X11 forwarding to run graphical applications remotely?"
ssh,ssh_06,ssh_06_10,alternative,Output run graphical applications remotely by performing: enable X11 forwarding
ssh,ssh_07,ssh_07_01,original,connect and set up reverse port forwarding (expose local service to remote)
ssh,ssh_07,ssh_07_02,beginner,How do I connect and set up reverse port forwarding (expose local service to remote)?
ssh,ssh_07,ssh_07_03,student,I need to connect and set up reverse port forwarding (expose local service to remote)
ssh,ssh_07,ssh_07_04,polite,Please connect and set up reverse port forwarding (expose local service to remote)
ssh,ssh_07,ssh_07_05,sysadmin,Use ssh to connect and set up reverse port forwarding (expose local service to remote)
ssh,ssh_07,ssh_07_06,goal_oriented,I want to connect and set up reverse port forwarding (expose local service to remote)
ssh,ssh_07,ssh_07_07,expert,connect set up reverse port forwarding (expose local service remote)
ssh,ssh_07,ssh_07_08,detailed,I have data that I need to process: connect and set up reverse port forwarding (expose local service to remote)
ssh,ssh_07,ssh_07_09,informal,"Hey, can you help me connect and set up reverse port forwarding (expose local service to remote)?"
ssh,ssh_07,ssh_07_10,alternative,Set up reverse port forwarding (expose local service to remote) after connect
ssh,ssh_08,ssh_08_01,original,create a SOCKS5 proxy tunnel through the remote host
ssh,ssh_08,ssh_08_02,beginner,How do I create a SOCKS5 proxy tunnel through the remote host?
ssh,ssh_08,ssh_08_03,student,I need to create a SOCKS5 proxy tunnel through the remote host
ssh,ssh_08,ssh_08_04,polite,Please create a SOCKS5 proxy tunnel through the remote host
ssh,ssh_08,ssh_08_05,sysadmin,Use ssh to create a SOCKS5 proxy tunnel through the remote host
ssh,ssh_08,ssh_08_06,goal_oriented,I want to create a SOCKS5 proxy tunnel through the remote host
ssh,ssh_08,ssh_08_07,expert,create SOCKS5 proxy tunnel through remote host
ssh,ssh_08,ssh_08_08,detailed,I have data that I need to process: create a SOCKS5 proxy tunnel through the remote host
ssh,ssh_08,ssh_08_09,informal,"Hey, can you help me create a SOCKS5 proxy tunnel through the remote host?"
ssh,ssh_08,ssh_08_10,alternative,Perform: create a SOCKS5 proxy tunnel through the remote host
ssh,ssh_09,ssh_09_01,original,keep connection alive and reconnect automatically
ssh,ssh_09,ssh_09_02,beginner,How do I keep connection alive and reconnect automatically?
ssh,ssh_09,ssh_09_03,student,I need to keep connection alive and reconnect automatically
ssh,ssh_09,ssh_09_04,polite,Please keep connection alive and reconnect automatically
ssh,ssh_09,ssh_09_05,sysadmin,Use ssh to keep connection alive and reconnect automatically
ssh,ssh_09,ssh_09_06,goal_oriented,I want to keep connection alive and reconnect automatically
ssh,ssh_09,ssh_09_07,expert,keep connection alive reconnect automatically
ssh,ssh_09,ssh_09_08,detailed,"I have data that I need to process: keep connection alive and reconnect automatically, saving the result to a specified output file"
ssh,ssh_09,ssh_09_09,informal,"Hey, can you help me keep connection alive and reconnect automatically?"
ssh,ssh_09,ssh_09_10,alternative,Reconnect automatically after keep connection alive
ssh,ssh_10,ssh_10_01,original,use jump host (bastion) to reach a machine not directly accessible
ssh,ssh_10,ssh_10_02,beginner,How do I use jump host (bastion) to reach a machine not directly accessible?
ssh,ssh_10,ssh_10_03,student,I need to use jump host (bastion) to reach a machine not directly accessible
ssh,ssh_10,ssh_10_04,polite,Please use jump host (bastion) to reach a machine not directly accessible
ssh,ssh_10,ssh_10_05,sysadmin,Use ssh to use jump host (bastion) to reach a machine not directly accessible
ssh,ssh_10,ssh_10_06,goal_oriented,I want to use jump host (bastion) to reach a machine not directly accessible
ssh,ssh_10,ssh_10_07,expert,use jump host (bastion) reach machine not directly accessible
ssh,ssh_10,ssh_10_08,detailed,I have data that I need to process: use jump host (bastion) to reach a machine not directly accessible
ssh,ssh_10,ssh_10_09,informal,"Hey, can you help me use jump host (bastion) to reach a machine not directly accessible?"
ssh,ssh_10,ssh_10_10,alternative,Output reach a machine not directly accessible by performing: use jump host (bastion)
star,star_01,star_01_01,original,build genome index for STAR alignment
star,star_01,star_01_02,beginner,How do I build genome index for STAR alignment?
star,star_01,star_01_03,student,I need to build genome index for STAR alignment
star,star_01,star_01_04,polite,Please build genome index for STAR alignment
star,star_01,star_01_05,sysadmin,Use star to build genome index for STAR alignment
star,star_01,star_01_06,goal_oriented,I want to build genome index for STAR alignment
star,star_01,star_01_07,expert,build genome index STAR alignment
star,star_01,star_01_08,detailed,I have data that I need to process: build genome index for STAR alignment
star,star_01,star_01_09,informal,"Hey, can you help me build genome index for STAR alignment?"
star,star_01,star_01_10,alternative,Perform: build genome index for STAR alignment
star,star_02,star_02_01,original,align paired-end RNA-seq gzipped FASTQ files to the genome
star,star_02,star_02_02,beginner,How do I align paired-end RNA-seq gzipped FASTQ files to the genome?
star,star_02,star_02_03,student,I need to align paired-end RNA-seq gzipped FASTQ files to the genome
star,star_02,star_02_04,polite,Please align paired-end RNA-seq gzipped FASTQ files to the genome
star,star_02,star_02_05,sysadmin,Use star to align paired-end RNA-seq gzipped FASTQ files to the genome
star,star_02,star_02_06,goal_oriented,I want to align paired-end RNA-seq gzipped FASTQ files to the genome
star,star_02,star_02_07,expert,align paired-end RNA-seq gzipped FASTQ files genome
star,star_02,star_02_08,detailed,I have data that I need to process: align paired-end RNA-seq gzipped FASTQ files to the genome
star,star_02,star_02_09,informal,"Hey, can you help me align paired-end RNA-seq gzipped FASTQ files to the genome?"
star,star_02,star_02_10,alternative,Output the genome by performing: align paired-end RNA-seq gzipped FASTQ files
star,star_03,star_03_01,original,align single-end RNA-seq reads with two-pass mode for better junction detection
star,star_03,star_03_02,beginner,How do I align single-end RNA-seq reads with two-pass mode for better junction detection?
star,star_03,star_03_03,student,I need to align single-end RNA-seq reads with two-pass mode for better junction detection
star,star_03,star_03_04,polite,Please align single-end RNA-seq reads with two-pass mode for better junction detection
star,star_03,star_03_05,sysadmin,Use star to align single-end RNA-seq reads with two-pass mode for better junction detection
star,star_03,star_03_06,goal_oriented,I want to align single-end RNA-seq reads with two-pass mode for better junction detection
star,star_03,star_03_07,expert,align single-end RNA-seq reads two-pass mode better junction detection
star,star_03,star_03_08,detailed,I have data that I need to process: align single-end RNA-seq reads with two-pass mode for better junction detection
star,star_03,star_03_09,informal,"Hey, can you help me align single-end RNA-seq reads with two-pass mode for better junction detection?"
star,star_03,star_03_10,alternative,"With two-pass mode for better junction detection, align single-end RNA-seq reads"
star,star_04,star_04_01,original,align reads and output unmapped reads to a FASTQ file
star,star_04,star_04_02,beginner,How do I align reads and output unmapped reads to a FASTQ file?
star,star_04,star_04_03,student,I need to align reads and output unmapped reads to a FASTQ file
star,star_04,star_04_04,polite,Please align reads and output unmapped reads to a FASTQ file
star,star_04,star_04_05,sysadmin,Use star to align reads and output unmapped reads to a FASTQ file
star,star_04,star_04_06,goal_oriented,I want to align reads and output unmapped reads to a FASTQ file
star,star_04,star_04_07,expert,align reads output unmapped reads FASTQ file
star,star_04,star_04_08,detailed,I have data that I need to process: align reads and output unmapped reads to a FASTQ file
star,star_04,star_04_09,informal,"Hey, can you help me align reads and output unmapped reads to a FASTQ file?"
star,star_04,star_04_10,alternative,Output unmapped reads to a FASTQ file after align reads
star,star_05,star_05_01,original,build genome index for STAR alignment with default parameters
star,star_05,star_05_02,beginner,How do I build genome index for STAR alignment with default parameters?
star,star_05,star_05_03,student,I need to build genome index for STAR alignment with default parameters
star,star_05,star_05_04,polite,Please build genome index for STAR alignment with default parameters
star,star_05,star_05_05,sysadmin,Use star to build genome index for STAR alignment with default parameters
star,star_05,star_05_06,goal_oriented,I want to build genome index for STAR alignment with default parameters
star,star_05,star_05_07,expert,build genome index STAR alignment default parameters
star,star_05,star_05_08,detailed,I have data that I need to process: build genome index for STAR alignment with default parameters
star,star_05,star_05_09,informal,"Hey, can you help me build genome index for STAR alignment with default parameters?"
star,star_05,star_05_10,alternative,"With default parameters, build genome index for STAR alignment"
star,star_06,star_06_01,original,align paired-end RNA-seq gzipped FASTQ files to the genome with verbose output
star,star_06,star_06_02,beginner,How do I align paired-end RNA-seq gzipped FASTQ files to the genome with verbose output?
star,star_06,star_06_03,student,I need to align paired-end RNA-seq gzipped FASTQ files to the genome with verbose output
star,star_06,star_06_04,polite,Please align paired-end RNA-seq gzipped FASTQ files to the genome with verbose output
star,star_06,star_06_05,sysadmin,Use star to align paired-end RNA-seq gzipped FASTQ files to the genome with verbose output
star,star_06,star_06_06,goal_oriented,I want to align paired-end RNA-seq gzipped FASTQ files to the genome with verbose output
star,star_06,star_06_07,expert,align paired-end RNA-seq gzipped FASTQ files genome verbose output
star,star_06,star_06_08,detailed,I have data that I need to process: align paired-end RNA-seq gzipped FASTQ files to the genome with verbose output
star,star_06,star_06_09,informal,"Hey, can you help me align paired-end RNA-seq gzipped FASTQ files to the genome with verbose output?"
star,star_06,star_06_10,alternative,"With verbose output, align paired-end RNA-seq gzipped FASTQ files to the genome"
star,star_07,star_07_01,original,align single-end RNA-seq reads with two-pass mode for better junction detection using multiple threads
star,star_07,star_07_02,beginner,How do I align single-end RNA-seq reads with two-pass mode for better junction detection using multiple threads?
star,star_07,star_07_03,student,I need to align single-end RNA-seq reads with two-pass mode for better junction detection using multiple threads
star,star_07,star_07_04,polite,Please align single-end RNA-seq reads with two-pass mode for better junction detection using multiple threads
star,star_07,star_07_05,sysadmin,Use star to align single-end RNA-seq reads with two-pass mode for better junction detection using multiple threads
star,star_07,star_07_06,goal_oriented,I want to align single-end RNA-seq reads with two-pass mode for better junction detection using multiple threads
star,star_07,star_07_07,expert,align single-end RNA-seq reads two-pass mode better junction detection multiple threads
star,star_07,star_07_08,detailed,"I have data that I need to process: align single-end RNA-seq reads with two-pass mode for better junction detection using multiple threads, utilizing multiple CPU threads for speed"
star,star_07,star_07_09,informal,"Hey, can you help me align single-end RNA-seq reads with two-pass mode for better junction detection using multiple threads?"
star,star_07,star_07_10,alternative,"With two-pass mode for better junction detection using multiple threads, align single-end RNA-seq reads"
star,star_08,star_08_01,original,align reads and output unmapped reads to a FASTQ file and write output to a file
star,star_08,star_08_02,beginner,How do I align reads and output unmapped reads to a FASTQ file and write output to a file?
star,star_08,star_08_03,student,I need to align reads and output unmapped reads to a FASTQ file and write output to a file
star,star_08,star_08_04,polite,Please align reads and output unmapped reads to a FASTQ file and write output to a file
star,star_08,star_08_05,sysadmin,Use star to align reads and output unmapped reads to a FASTQ file and write output to a file
star,star_08,star_08_06,goal_oriented,I want to align reads and output unmapped reads to a FASTQ file and write output to a file
star,star_08,star_08_07,expert,align reads output unmapped reads FASTQ file write output file
star,star_08,star_08_08,detailed,"I have data that I need to process: align reads and output unmapped reads to a FASTQ file and write output to a file, saving the result to a specified output file"
star,star_08,star_08_09,informal,"Hey, can you help me align reads and output unmapped reads to a FASTQ file and write output to a file?"
star,star_08,star_08_10,alternative,Output unmapped reads to a FASTQ file and write output to a file after align reads
star,star_09,star_09_01,original,build genome index for STAR alignment in quiet mode
star,star_09,star_09_02,beginner,How do I build genome index for STAR alignment in quiet mode?
star,star_09,star_09_03,student,I need to build genome index for STAR alignment in quiet mode
star,star_09,star_09_04,polite,Please build genome index for STAR alignment in quiet mode
star,star_09,star_09_05,sysadmin,Use star to build genome index for STAR alignment in quiet mode
star,star_09,star_09_06,goal_oriented,I want to build genome index for STAR alignment in quiet mode
star,star_09,star_09_07,expert,build genome index STAR alignment quiet mode
star,star_09,star_09_08,detailed,I have data that I need to process: build genome index for STAR alignment in quiet mode
star,star_09,star_09_09,informal,"Hey, can you help me build genome index for STAR alignment in quiet mode?"
star,star_09,star_09_10,alternative,Perform: build genome index for STAR alignment in quiet mode
star,star_10,star_10_01,original,align paired-end RNA-seq gzipped FASTQ files to the genome with default parameters
star,star_10,star_10_02,beginner,How do I align paired-end RNA-seq gzipped FASTQ files to the genome with default parameters?
star,star_10,star_10_03,student,I need to align paired-end RNA-seq gzipped FASTQ files to the genome with default parameters
star,star_10,star_10_04,polite,Please align paired-end RNA-seq gzipped FASTQ files to the genome with default parameters
star,star_10,star_10_05,sysadmin,Use star to align paired-end RNA-seq gzipped FASTQ files to the genome with default parameters
star,star_10,star_10_06,goal_oriented,I want to align paired-end RNA-seq gzipped FASTQ files to the genome with default parameters
star,star_10,star_10_07,expert,align paired-end RNA-seq gzipped FASTQ files genome default parameters
star,star_10,star_10_08,detailed,I have data that I need to process: align paired-end RNA-seq gzipped FASTQ files to the genome with default parameters
star,star_10,star_10_09,informal,"Hey, can you help me align paired-end RNA-seq gzipped FASTQ files to the genome with default parameters?"
star,star_10,star_10_10,alternative,"With default parameters, align paired-end RNA-seq gzipped FASTQ files to the genome"
starsolo,starsolo_01,starsolo_01_01,original,process 10x Chromium v3 scRNA-seq with STARsolo
starsolo,starsolo_01,starsolo_01_02,beginner,How do I process 10x Chromium v3 scRNA-seq with STARsolo?
starsolo,starsolo_01,starsolo_01_03,student,I need to process 10x Chromium v3 scRNA-seq with STARsolo
starsolo,starsolo_01,starsolo_01_04,polite,Please process 10x Chromium v3 scRNA-seq with STARsolo
starsolo,starsolo_01,starsolo_01_05,sysadmin,Use starsolo to process 10x Chromium v3 scRNA-seq with STARsolo
starsolo,starsolo_01,starsolo_01_06,goal_oriented,I want to process 10x Chromium v3 scRNA-seq with STARsolo
starsolo,starsolo_01,starsolo_01_07,expert,process 10x Chromium v3 scRNA-seq STARsolo
starsolo,starsolo_01,starsolo_01_08,detailed,I have data that I need to process: process 10x Chromium v3 scRNA-seq with STARsolo
starsolo,starsolo_01,starsolo_01_09,informal,"Hey, can you help me process 10x Chromium v3 scRNA-seq with STARsolo?"
starsolo,starsolo_01,starsolo_01_10,alternative,"With STARsolo, process 10x Chromium v3 scRNA-seq"
starsolo,starsolo_02,starsolo_02_01,original,process 10x Chromium v2 scRNA-seq with STARsolo
starsolo,starsolo_02,starsolo_02_02,beginner,How do I process 10x Chromium v2 scRNA-seq with STARsolo?
starsolo,starsolo_02,starsolo_02_03,student,I need to process 10x Chromium v2 scRNA-seq with STARsolo
starsolo,starsolo_02,starsolo_02_04,polite,Please process 10x Chromium v2 scRNA-seq with STARsolo
starsolo,starsolo_02,starsolo_02_05,sysadmin,Use starsolo to process 10x Chromium v2 scRNA-seq with STARsolo
starsolo,starsolo_02,starsolo_02_06,goal_oriented,I want to process 10x Chromium v2 scRNA-seq with STARsolo
starsolo,starsolo_02,starsolo_02_07,expert,process 10x Chromium v2 scRNA-seq STARsolo
starsolo,starsolo_02,starsolo_02_08,detailed,I have data that I need to process: process 10x Chromium v2 scRNA-seq with STARsolo
starsolo,starsolo_02,starsolo_02_09,informal,"Hey, can you help me process 10x Chromium v2 scRNA-seq with STARsolo?"
starsolo,starsolo_02,starsolo_02_10,alternative,"With STARsolo, process 10x Chromium v2 scRNA-seq"
starsolo,starsolo_03,starsolo_03_01,original,run STARsolo with RNA velocity output
starsolo,starsolo_03,starsolo_03_02,beginner,How do I run STARsolo with RNA velocity output?
starsolo,starsolo_03,starsolo_03_03,student,I need to run STARsolo with RNA velocity output
starsolo,starsolo_03,starsolo_03_04,polite,Please run STARsolo with RNA velocity output
starsolo,starsolo_03,starsolo_03_05,sysadmin,Use starsolo to run STARsolo with RNA velocity output
starsolo,starsolo_03,starsolo_03_06,goal_oriented,I want to run STARsolo with RNA velocity output
starsolo,starsolo_03,starsolo_03_07,expert,run STARsolo RNA velocity output
starsolo,starsolo_03,starsolo_03_08,detailed,I have data that I need to process: run STARsolo with RNA velocity output
starsolo,starsolo_03,starsolo_03_09,informal,"Hey, can you help me run STARsolo with RNA velocity output?"
starsolo,starsolo_03,starsolo_03_10,alternative,"With RNA velocity output, run STARsolo"
starsolo,starsolo_04,starsolo_04_01,original,process 10x Chromium v3 scRNA-seq with STARsolo in quiet mode
starsolo,starsolo_04,starsolo_04_02,beginner,How do I process 10x Chromium v3 scRNA-seq with STARsolo in quiet mode?
starsolo,starsolo_04,starsolo_04_03,student,I need to process 10x Chromium v3 scRNA-seq with STARsolo in quiet mode
starsolo,starsolo_04,starsolo_04_04,polite,Please process 10x Chromium v3 scRNA-seq with STARsolo in quiet mode
starsolo,starsolo_04,starsolo_04_05,sysadmin,Use starsolo to process 10x Chromium v3 scRNA-seq with STARsolo in quiet mode
starsolo,starsolo_04,starsolo_04_06,goal_oriented,I want to process 10x Chromium v3 scRNA-seq with STARsolo in quiet mode
starsolo,starsolo_04,starsolo_04_07,expert,process 10x Chromium v3 scRNA-seq STARsolo quiet mode
starsolo,starsolo_04,starsolo_04_08,detailed,I have data that I need to process: process 10x Chromium v3 scRNA-seq with STARsolo in quiet mode
starsolo,starsolo_04,starsolo_04_09,informal,"Hey, can you help me process 10x Chromium v3 scRNA-seq with STARsolo in quiet mode?"
starsolo,starsolo_04,starsolo_04_10,alternative,"With STARsolo in quiet mode, process 10x Chromium v3 scRNA-seq"
starsolo,starsolo_05,starsolo_05_01,original,process 10x Chromium v2 scRNA-seq with STARsolo with default parameters
starsolo,starsolo_05,starsolo_05_02,beginner,How do I process 10x Chromium v2 scRNA-seq with STARsolo with default parameters?
starsolo,starsolo_05,starsolo_05_03,student,I need to process 10x Chromium v2 scRNA-seq with STARsolo with default parameters
starsolo,starsolo_05,starsolo_05_04,polite,Please process 10x Chromium v2 scRNA-seq with STARsolo with default parameters
starsolo,starsolo_05,starsolo_05_05,sysadmin,Use starsolo to process 10x Chromium v2 scRNA-seq with STARsolo with default parameters
starsolo,starsolo_05,starsolo_05_06,goal_oriented,I want to process 10x Chromium v2 scRNA-seq with STARsolo with default parameters
starsolo,starsolo_05,starsolo_05_07,expert,process 10x Chromium v2 scRNA-seq STARsolo default parameters
starsolo,starsolo_05,starsolo_05_08,detailed,I have data that I need to process: process 10x Chromium v2 scRNA-seq with STARsolo with default parameters
starsolo,starsolo_05,starsolo_05_09,informal,"Hey, can you help me process 10x Chromium v2 scRNA-seq with STARsolo with default parameters?"
starsolo,starsolo_05,starsolo_05_10,alternative,"With STARsolo with default parameters, process 10x Chromium v2 scRNA-seq"
starsolo,starsolo_06,starsolo_06_01,original,run STARsolo with RNA velocity output with verbose output
starsolo,starsolo_06,starsolo_06_02,beginner,How do I run STARsolo with RNA velocity output with verbose output?
starsolo,starsolo_06,starsolo_06_03,student,I need to run STARsolo with RNA velocity output with verbose output
starsolo,starsolo_06,starsolo_06_04,polite,Please run STARsolo with RNA velocity output with verbose output
starsolo,starsolo_06,starsolo_06_05,sysadmin,Use starsolo to run STARsolo with RNA velocity output with verbose output
starsolo,starsolo_06,starsolo_06_06,goal_oriented,I want to run STARsolo with RNA velocity output with verbose output
starsolo,starsolo_06,starsolo_06_07,expert,run STARsolo RNA velocity output verbose output
starsolo,starsolo_06,starsolo_06_08,detailed,I have data that I need to process: run STARsolo with RNA velocity output with verbose output
starsolo,starsolo_06,starsolo_06_09,informal,"Hey, can you help me run STARsolo with RNA velocity output with verbose output?"
starsolo,starsolo_06,starsolo_06_10,alternative,"With RNA velocity output with verbose output, run STARsolo"
starsolo,starsolo_07,starsolo_07_01,original,process 10x Chromium v3 scRNA-seq with STARsolo using multiple threads
starsolo,starsolo_07,starsolo_07_02,beginner,How do I process 10x Chromium v3 scRNA-seq with STARsolo using multiple threads?
starsolo,starsolo_07,starsolo_07_03,student,I need to process 10x Chromium v3 scRNA-seq with STARsolo using multiple threads
starsolo,starsolo_07,starsolo_07_04,polite,Please process 10x Chromium v3 scRNA-seq with STARsolo using multiple threads
starsolo,starsolo_07,starsolo_07_05,sysadmin,Use starsolo to process 10x Chromium v3 scRNA-seq with STARsolo using multiple threads
starsolo,starsolo_07,starsolo_07_06,goal_oriented,I want to process 10x Chromium v3 scRNA-seq with STARsolo using multiple threads
starsolo,starsolo_07,starsolo_07_07,expert,process 10x Chromium v3 scRNA-seq STARsolo multiple threads
starsolo,starsolo_07,starsolo_07_08,detailed,"I have data that I need to process: process 10x Chromium v3 scRNA-seq with STARsolo using multiple threads, utilizing multiple CPU threads for speed"
starsolo,starsolo_07,starsolo_07_09,informal,"Hey, can you help me process 10x Chromium v3 scRNA-seq with STARsolo using multiple threads?"
starsolo,starsolo_07,starsolo_07_10,alternative,"With STARsolo using multiple threads, process 10x Chromium v3 scRNA-seq"
starsolo,starsolo_08,starsolo_08_01,original,process 10x Chromium v2 scRNA-seq with STARsolo and write output to a file
starsolo,starsolo_08,starsolo_08_02,beginner,How do I process 10x Chromium v2 scRNA-seq with STARsolo and write output to a file?
starsolo,starsolo_08,starsolo_08_03,student,I need to process 10x Chromium v2 scRNA-seq with STARsolo and write output to a file
starsolo,starsolo_08,starsolo_08_04,polite,Please process 10x Chromium v2 scRNA-seq with STARsolo and write output to a file
starsolo,starsolo_08,starsolo_08_05,sysadmin,Use starsolo to process 10x Chromium v2 scRNA-seq with STARsolo and write output to a file
starsolo,starsolo_08,starsolo_08_06,goal_oriented,I want to process 10x Chromium v2 scRNA-seq with STARsolo and write output to a file
starsolo,starsolo_08,starsolo_08_07,expert,process 10x Chromium v2 scRNA-seq STARsolo write output file
starsolo,starsolo_08,starsolo_08_08,detailed,"I have data that I need to process: process 10x Chromium v2 scRNA-seq with STARsolo and write output to a file, saving the result to a specified output file"
starsolo,starsolo_08,starsolo_08_09,informal,"Hey, can you help me process 10x Chromium v2 scRNA-seq with STARsolo and write output to a file?"
starsolo,starsolo_08,starsolo_08_10,alternative,Write output to a file after process 10x Chromium v2 scRNA-seq with STARsolo
starsolo,starsolo_09,starsolo_09_01,original,run STARsolo with RNA velocity output in quiet mode
starsolo,starsolo_09,starsolo_09_02,beginner,How do I run STARsolo with RNA velocity output in quiet mode?
starsolo,starsolo_09,starsolo_09_03,student,I need to run STARsolo with RNA velocity output in quiet mode
starsolo,starsolo_09,starsolo_09_04,polite,Please run STARsolo with RNA velocity output in quiet mode
starsolo,starsolo_09,starsolo_09_05,sysadmin,Use starsolo to run STARsolo with RNA velocity output in quiet mode
starsolo,starsolo_09,starsolo_09_06,goal_oriented,I want to run STARsolo with RNA velocity output in quiet mode
starsolo,starsolo_09,starsolo_09_07,expert,run STARsolo RNA velocity output quiet mode
starsolo,starsolo_09,starsolo_09_08,detailed,I have data that I need to process: run STARsolo with RNA velocity output in quiet mode
starsolo,starsolo_09,starsolo_09_09,informal,"Hey, can you help me run STARsolo with RNA velocity output in quiet mode?"
starsolo,starsolo_09,starsolo_09_10,alternative,"With RNA velocity output in quiet mode, run STARsolo"
starsolo,starsolo_10,starsolo_10_01,original,process 10x Chromium v3 scRNA-seq with STARsolo with default parameters
starsolo,starsolo_10,starsolo_10_02,beginner,How do I process 10x Chromium v3 scRNA-seq with STARsolo with default parameters?
starsolo,starsolo_10,starsolo_10_03,student,I need to process 10x Chromium v3 scRNA-seq with STARsolo with default parameters
starsolo,starsolo_10,starsolo_10_04,polite,Please process 10x Chromium v3 scRNA-seq with STARsolo with default parameters
starsolo,starsolo_10,starsolo_10_05,sysadmin,Use starsolo to process 10x Chromium v3 scRNA-seq with STARsolo with default parameters
starsolo,starsolo_10,starsolo_10_06,goal_oriented,I want to process 10x Chromium v3 scRNA-seq with STARsolo with default parameters
starsolo,starsolo_10,starsolo_10_07,expert,process 10x Chromium v3 scRNA-seq STARsolo default parameters
starsolo,starsolo_10,starsolo_10_08,detailed,I have data that I need to process: process 10x Chromium v3 scRNA-seq with STARsolo with default parameters
starsolo,starsolo_10,starsolo_10_09,informal,"Hey, can you help me process 10x Chromium v3 scRNA-seq with STARsolo with default parameters?"
starsolo,starsolo_10,starsolo_10_10,alternative,"With STARsolo with default parameters, process 10x Chromium v3 scRNA-seq"
strelka2,strelka2_01,strelka2_01_01,original,configure and run Strelka2 germline variant calling
strelka2,strelka2_01,strelka2_01_02,beginner,How do I configure and run Strelka2 germline variant calling?
strelka2,strelka2_01,strelka2_01_03,student,I need to configure and run Strelka2 germline variant calling
strelka2,strelka2_01,strelka2_01_04,polite,Please configure and run Strelka2 germline variant calling
strelka2,strelka2_01,strelka2_01_05,sysadmin,Use strelka2 to configure and run Strelka2 germline variant calling
strelka2,strelka2_01,strelka2_01_06,goal_oriented,I want to configure and run Strelka2 germline variant calling
strelka2,strelka2_01,strelka2_01_07,expert,configure run Strelka2 germline variant calling
strelka2,strelka2_01,strelka2_01_08,detailed,I have data that I need to process: configure and run Strelka2 germline variant calling
strelka2,strelka2_01,strelka2_01_09,informal,"Hey, can you help me configure and run Strelka2 germline variant calling?"
strelka2,strelka2_01,strelka2_01_10,alternative,Run Strelka2 germline variant calling after configure
strelka2,strelka2_02,strelka2_02_01,original,configure and run Strelka2 somatic variant calling for tumor-normal pair
strelka2,strelka2_02,strelka2_02_02,beginner,How do I configure and run Strelka2 somatic variant calling for tumor-normal pair?
strelka2,strelka2_02,strelka2_02_03,student,I need to configure and run Strelka2 somatic variant calling for tumor-normal pair
strelka2,strelka2_02,strelka2_02_04,polite,Please configure and run Strelka2 somatic variant calling for tumor-normal pair
strelka2,strelka2_02,strelka2_02_05,sysadmin,Use strelka2 to configure and run Strelka2 somatic variant calling for tumor-normal pair
strelka2,strelka2_02,strelka2_02_06,goal_oriented,I want to configure and run Strelka2 somatic variant calling for tumor-normal pair
strelka2,strelka2_02,strelka2_02_07,expert,configure run Strelka2 somatic variant calling tumor-normal pair
strelka2,strelka2_02,strelka2_02_08,detailed,I have data that I need to process: configure and run Strelka2 somatic variant calling for tumor-normal pair
strelka2,strelka2_02,strelka2_02_09,informal,"Hey, can you help me configure and run Strelka2 somatic variant calling for tumor-normal pair?"
strelka2,strelka2_02,strelka2_02_10,alternative,Run Strelka2 somatic variant calling for tumor-normal pair after configure
strelka2,strelka2_03,strelka2_03_01,original,run Strelka2 germline on WES data with target regions
strelka2,strelka2_03,strelka2_03_02,beginner,How do I run Strelka2 germline on WES data with target regions?
strelka2,strelka2_03,strelka2_03_03,student,I need to run Strelka2 germline on WES data with target regions
strelka2,strelka2_03,strelka2_03_04,polite,Please run Strelka2 germline on WES data with target regions
strelka2,strelka2_03,strelka2_03_05,sysadmin,Use strelka2 to run Strelka2 germline on WES data with target regions
strelka2,strelka2_03,strelka2_03_06,goal_oriented,I want to run Strelka2 germline on WES data with target regions
strelka2,strelka2_03,strelka2_03_07,expert,run Strelka2 germline on WES data target regions
strelka2,strelka2_03,strelka2_03_08,detailed,I have data that I need to process: run Strelka2 germline on WES data with target regions
strelka2,strelka2_03,strelka2_03_09,informal,"Hey, can you help me run Strelka2 germline on WES data with target regions?"
strelka2,strelka2_03,strelka2_03_10,alternative,"With target regions, run Strelka2 germline on WES data"
strelka2,strelka2_04,strelka2_04_01,original,run Strelka2 somatic with Manta indel candidates for improved accuracy
strelka2,strelka2_04,strelka2_04_02,beginner,How do I run Strelka2 somatic with Manta indel candidates for improved accuracy?
strelka2,strelka2_04,strelka2_04_03,student,I need to run Strelka2 somatic with Manta indel candidates for improved accuracy
strelka2,strelka2_04,strelka2_04_04,polite,Please run Strelka2 somatic with Manta indel candidates for improved accuracy
strelka2,strelka2_04,strelka2_04_05,sysadmin,Use strelka2 to run Strelka2 somatic with Manta indel candidates for improved accuracy
strelka2,strelka2_04,strelka2_04_06,goal_oriented,I want to run Strelka2 somatic with Manta indel candidates for improved accuracy
strelka2,strelka2_04,strelka2_04_07,expert,run Strelka2 somatic Manta indel candidates improved accuracy
strelka2,strelka2_04,strelka2_04_08,detailed,I have data that I need to process: run Strelka2 somatic with Manta indel candidates for improved accuracy
strelka2,strelka2_04,strelka2_04_09,informal,"Hey, can you help me run Strelka2 somatic with Manta indel candidates for improved accuracy?"
strelka2,strelka2_04,strelka2_04_10,alternative,"With Manta indel candidates for improved accuracy, run Strelka2 somatic"
strelka2,strelka2_05,strelka2_05_01,original,configure and run Strelka2 germline variant calling with default parameters
strelka2,strelka2_05,strelka2_05_02,beginner,How do I configure and run Strelka2 germline variant calling with default parameters?
strelka2,strelka2_05,strelka2_05_03,student,I need to configure and run Strelka2 germline variant calling with default parameters
strelka2,strelka2_05,strelka2_05_04,polite,Please configure and run Strelka2 germline variant calling with default parameters
strelka2,strelka2_05,strelka2_05_05,sysadmin,Use strelka2 to configure and run Strelka2 germline variant calling with default parameters
strelka2,strelka2_05,strelka2_05_06,goal_oriented,I want to configure and run Strelka2 germline variant calling with default parameters
strelka2,strelka2_05,strelka2_05_07,expert,configure run Strelka2 germline variant calling default parameters
strelka2,strelka2_05,strelka2_05_08,detailed,I have data that I need to process: configure and run Strelka2 germline variant calling with default parameters
strelka2,strelka2_05,strelka2_05_09,informal,"Hey, can you help me configure and run Strelka2 germline variant calling with default parameters?"
strelka2,strelka2_05,strelka2_05_10,alternative,Run Strelka2 germline variant calling with default parameters after configure
strelka2,strelka2_06,strelka2_06_01,original,configure and run Strelka2 somatic variant calling for tumor-normal pair with verbose output
strelka2,strelka2_06,strelka2_06_02,beginner,How do I configure and run Strelka2 somatic variant calling for tumor-normal pair with verbose output?
strelka2,strelka2_06,strelka2_06_03,student,I need to configure and run Strelka2 somatic variant calling for tumor-normal pair with verbose output
strelka2,strelka2_06,strelka2_06_04,polite,Please configure and run Strelka2 somatic variant calling for tumor-normal pair with verbose output
strelka2,strelka2_06,strelka2_06_05,sysadmin,Use strelka2 to configure and run Strelka2 somatic variant calling for tumor-normal pair with verbose output
strelka2,strelka2_06,strelka2_06_06,goal_oriented,I want to configure and run Strelka2 somatic variant calling for tumor-normal pair with verbose output
strelka2,strelka2_06,strelka2_06_07,expert,configure run Strelka2 somatic variant calling tumor-normal pair verbose output
strelka2,strelka2_06,strelka2_06_08,detailed,I have data that I need to process: configure and run Strelka2 somatic variant calling for tumor-normal pair with verbose output
strelka2,strelka2_06,strelka2_06_09,informal,"Hey, can you help me configure and run Strelka2 somatic variant calling for tumor-normal pair with verbose output?"
strelka2,strelka2_06,strelka2_06_10,alternative,Run Strelka2 somatic variant calling for tumor-normal pair with verbose output after configure
strelka2,strelka2_07,strelka2_07_01,original,run Strelka2 germline on WES data with target regions using multiple threads
strelka2,strelka2_07,strelka2_07_02,beginner,How do I run Strelka2 germline on WES data with target regions using multiple threads?
strelka2,strelka2_07,strelka2_07_03,student,I need to run Strelka2 germline on WES data with target regions using multiple threads
strelka2,strelka2_07,strelka2_07_04,polite,Please run Strelka2 germline on WES data with target regions using multiple threads
strelka2,strelka2_07,strelka2_07_05,sysadmin,Use strelka2 to run Strelka2 germline on WES data with target regions using multiple threads
strelka2,strelka2_07,strelka2_07_06,goal_oriented,I want to run Strelka2 germline on WES data with target regions using multiple threads
strelka2,strelka2_07,strelka2_07_07,expert,run Strelka2 germline on WES data target regions multiple threads
strelka2,strelka2_07,strelka2_07_08,detailed,I have data that I need to process: run Strelka2 germline on WES data with target regions using multiple threads
strelka2,strelka2_07,strelka2_07_09,informal,"Hey, can you help me run Strelka2 germline on WES data with target regions using multiple threads?"
strelka2,strelka2_07,strelka2_07_10,alternative,"With target regions using multiple threads, run Strelka2 germline on WES data"
strelka2,strelka2_08,strelka2_08_01,original,run Strelka2 somatic with Manta indel candidates for improved accuracy and write output to a file
strelka2,strelka2_08,strelka2_08_02,beginner,How do I run Strelka2 somatic with Manta indel candidates for improved accuracy and write output to a file?
strelka2,strelka2_08,strelka2_08_03,student,I need to run Strelka2 somatic with Manta indel candidates for improved accuracy and write output to a file
strelka2,strelka2_08,strelka2_08_04,polite,Please run Strelka2 somatic with Manta indel candidates for improved accuracy and write output to a file
strelka2,strelka2_08,strelka2_08_05,sysadmin,Use strelka2 to run Strelka2 somatic with Manta indel candidates for improved accuracy and write output to a file
strelka2,strelka2_08,strelka2_08_06,goal_oriented,I want to run Strelka2 somatic with Manta indel candidates for improved accuracy and write output to a file
strelka2,strelka2_08,strelka2_08_07,expert,run Strelka2 somatic Manta indel candidates improved accuracy write output file
strelka2,strelka2_08,strelka2_08_08,detailed,"I have data that I need to process: run Strelka2 somatic with Manta indel candidates for improved accuracy and write output to a file, saving the result to a specified output file"
strelka2,strelka2_08,strelka2_08_09,informal,"Hey, can you help me run Strelka2 somatic with Manta indel candidates for improved accuracy and write output to a file?"
strelka2,strelka2_08,strelka2_08_10,alternative,Write output to a file after run Strelka2 somatic with Manta indel candidates for improved accuracy
strelka2,strelka2_09,strelka2_09_01,original,configure and run Strelka2 germline variant calling in quiet mode
strelka2,strelka2_09,strelka2_09_02,beginner,How do I configure and run Strelka2 germline variant calling in quiet mode?
strelka2,strelka2_09,strelka2_09_03,student,I need to configure and run Strelka2 germline variant calling in quiet mode
strelka2,strelka2_09,strelka2_09_04,polite,Please configure and run Strelka2 germline variant calling in quiet mode
strelka2,strelka2_09,strelka2_09_05,sysadmin,Use strelka2 to configure and run Strelka2 germline variant calling in quiet mode
strelka2,strelka2_09,strelka2_09_06,goal_oriented,I want to configure and run Strelka2 germline variant calling in quiet mode
strelka2,strelka2_09,strelka2_09_07,expert,configure run Strelka2 germline variant calling quiet mode
strelka2,strelka2_09,strelka2_09_08,detailed,I have data that I need to process: configure and run Strelka2 germline variant calling in quiet mode
strelka2,strelka2_09,strelka2_09_09,informal,"Hey, can you help me configure and run Strelka2 germline variant calling in quiet mode?"
strelka2,strelka2_09,strelka2_09_10,alternative,Run Strelka2 germline variant calling in quiet mode after configure
strelka2,strelka2_10,strelka2_10_01,original,configure and run Strelka2 somatic variant calling for tumor-normal pair with default parameters
strelka2,strelka2_10,strelka2_10_02,beginner,How do I configure and run Strelka2 somatic variant calling for tumor-normal pair with default parameters?
strelka2,strelka2_10,strelka2_10_03,student,I need to configure and run Strelka2 somatic variant calling for tumor-normal pair with default parameters
strelka2,strelka2_10,strelka2_10_04,polite,Please configure and run Strelka2 somatic variant calling for tumor-normal pair with default parameters
strelka2,strelka2_10,strelka2_10_05,sysadmin,Use strelka2 to configure and run Strelka2 somatic variant calling for tumor-normal pair with default parameters
strelka2,strelka2_10,strelka2_10_06,goal_oriented,I want to configure and run Strelka2 somatic variant calling for tumor-normal pair with default parameters
strelka2,strelka2_10,strelka2_10_07,expert,configure run Strelka2 somatic variant calling tumor-normal pair default parameters
strelka2,strelka2_10,strelka2_10_08,detailed,I have data that I need to process: configure and run Strelka2 somatic variant calling for tumor-normal pair with default parameters
strelka2,strelka2_10,strelka2_10_09,informal,"Hey, can you help me configure and run Strelka2 somatic variant calling for tumor-normal pair with default parameters?"
strelka2,strelka2_10,strelka2_10_10,alternative,Run Strelka2 somatic variant calling for tumor-normal pair with default parameters after configure
stringtie,stringtie_01,stringtie_01_01,original,assemble transcripts from HISAT2-aligned RNA-seq BAM with reference annotation
stringtie,stringtie_01,stringtie_01_02,beginner,How do I assemble transcripts from HISAT2-aligned RNA-seq BAM with reference annotation?
stringtie,stringtie_01,stringtie_01_03,student,I need to assemble transcripts from HISAT2-aligned RNA-seq BAM with reference annotation
stringtie,stringtie_01,stringtie_01_04,polite,Please assemble transcripts from HISAT2-aligned RNA-seq BAM with reference annotation
stringtie,stringtie_01,stringtie_01_05,sysadmin,Use stringtie to assemble transcripts from HISAT2-aligned RNA-seq BAM with reference annotation
stringtie,stringtie_01,stringtie_01_06,goal_oriented,I want to assemble transcripts from HISAT2-aligned RNA-seq BAM with reference annotation
stringtie,stringtie_01,stringtie_01_07,expert,assemble transcripts HISAT2-aligned RNA-seq BAM reference annotation
stringtie,stringtie_01,stringtie_01_08,detailed,"I have data that I need to process: assemble transcripts from HISAT2-aligned RNA-seq BAM with reference annotation, utilizing multiple CPU threads for speed, saving the result to a specified output file"
stringtie,stringtie_01,stringtie_01_09,informal,"Hey, can you help me assemble transcripts from HISAT2-aligned RNA-seq BAM with reference annotation?"
stringtie,stringtie_01,stringtie_01_10,alternative,"With reference annotation, assemble transcripts from HISAT2-aligned RNA-seq BAM"
stringtie,stringtie_02,stringtie_02_01,original,merge per-sample StringTie GTFs into unified transcript catalog
stringtie,stringtie_02,stringtie_02_02,beginner,How do I merge per-sample StringTie GTFs into unified transcript catalog?
stringtie,stringtie_02,stringtie_02_03,student,I need to merge per-sample StringTie GTFs into unified transcript catalog
stringtie,stringtie_02,stringtie_02_04,polite,Please merge per-sample StringTie GTFs into unified transcript catalog
stringtie,stringtie_02,stringtie_02_05,sysadmin,Use stringtie to merge per-sample StringTie GTFs into unified transcript catalog
stringtie,stringtie_02,stringtie_02_06,goal_oriented,I want to merge per-sample StringTie GTFs into unified transcript catalog
stringtie,stringtie_02,stringtie_02_07,expert,merge per-sample StringTie GTFs unified transcript catalog
stringtie,stringtie_02,stringtie_02_08,detailed,"I have data that I need to process: merge per-sample StringTie GTFs into unified transcript catalog, saving the result to a specified output file"
stringtie,stringtie_02,stringtie_02_09,informal,"Hey, can you help me merge per-sample StringTie GTFs into unified transcript catalog?"
stringtie,stringtie_02,stringtie_02_10,alternative,Perform: merge per-sample StringTie GTFs into unified transcript catalog
stringtie,stringtie_03,stringtie_03_01,original,re-quantify known and assembled transcripts using merged annotation (for count extraction)
stringtie,stringtie_03,stringtie_03_02,beginner,How do I re-quantify known and assembled transcripts using merged annotation (for count extraction)?
stringtie,stringtie_03,stringtie_03_03,student,I need to re-quantify known and assembled transcripts using merged annotation (for count extraction)
stringtie,stringtie_03,stringtie_03_04,polite,Please re-quantify known and assembled transcripts using merged annotation (for count extraction)
stringtie,stringtie_03,stringtie_03_05,sysadmin,Use stringtie to re-quantify known and assembled transcripts using merged annotation (for count extraction)
stringtie,stringtie_03,stringtie_03_06,goal_oriented,I want to re-quantify known and assembled transcripts using merged annotation (for count extraction)
stringtie,stringtie_03,stringtie_03_07,expert,re-quantify known assembled transcripts merged annotation (for count extraction)
stringtie,stringtie_03,stringtie_03_08,detailed,"I have data that I need to process: re-quantify known and assembled transcripts using merged annotation (for count extraction), utilizing multiple CPU threads for speed, saving the result to a specified output file"
stringtie,stringtie_03,stringtie_03_09,informal,"Hey, can you help me re-quantify known and assembled transcripts using merged annotation (for count extraction)?"
stringtie,stringtie_03,stringtie_03_10,alternative,Assembled transcripts using merged annotation (for count extraction) after re-quantify known
stringtie,stringtie_04,stringtie_04_01,original,assemble and quantify without reference annotation (novel transcript discovery)
stringtie,stringtie_04,stringtie_04_02,beginner,How do I assemble and quantify without reference annotation (novel transcript discovery)?
stringtie,stringtie_04,stringtie_04_03,student,I need to assemble and quantify without reference annotation (novel transcript discovery)
stringtie,stringtie_04,stringtie_04_04,polite,Please assemble and quantify without reference annotation (novel transcript discovery)
stringtie,stringtie_04,stringtie_04_05,sysadmin,Use stringtie to assemble and quantify without reference annotation (novel transcript discovery)
stringtie,stringtie_04,stringtie_04_06,goal_oriented,I want to assemble and quantify without reference annotation (novel transcript discovery)
stringtie,stringtie_04,stringtie_04_07,expert,assemble quantify without reference annotation (novel transcript discovery)
stringtie,stringtie_04,stringtie_04_08,detailed,"I have data that I need to process: assemble and quantify without reference annotation (novel transcript discovery), utilizing multiple CPU threads for speed, saving the result to a specified output file"
stringtie,stringtie_04,stringtie_04_09,informal,"Hey, can you help me assemble and quantify without reference annotation (novel transcript discovery)?"
stringtie,stringtie_04,stringtie_04_10,alternative,Quantify without reference annotation (novel transcript discovery) after assemble
stringtie,stringtie_05,stringtie_05_01,original,extract count matrix from StringTie -e output for DESeq2 with prepDE.py3
stringtie,stringtie_05,stringtie_05_02,beginner,How do I extract count matrix from StringTie -e output for DESeq2 with prepDE.py3?
stringtie,stringtie_05,stringtie_05_03,student,I need to extract count matrix from StringTie -e output for DESeq2 with prepDE.py3
stringtie,stringtie_05,stringtie_05_04,polite,Please extract count matrix from StringTie -e output for DESeq2 with prepDE.py3
stringtie,stringtie_05,stringtie_05_05,sysadmin,Use stringtie to extract count matrix from StringTie -e output for DESeq2 with prepDE.py3
stringtie,stringtie_05,stringtie_05_06,goal_oriented,I want to extract count matrix from StringTie -e output for DESeq2 with prepDE.py3
stringtie,stringtie_05,stringtie_05_07,expert,extract count matrix StringTie -e output DESeq2 prepDE.py3
stringtie,stringtie_05,stringtie_05_08,detailed,I have data that I need to process: extract count matrix from StringTie -e output for DESeq2 with prepDE.py3
stringtie,stringtie_05,stringtie_05_09,informal,"Hey, can you help me extract count matrix from StringTie -e output for DESeq2 with prepDE.py3?"
stringtie,stringtie_05,stringtie_05_10,alternative,"With prepDE.py3, extract count matrix from StringTie -e output for DESeq2"
stringtie,stringtie_06,stringtie_06_01,original,assemble transcripts from HISAT2-aligned RNA-seq BAM with reference annotation with verbose output
stringtie,stringtie_06,stringtie_06_02,beginner,How do I assemble transcripts from HISAT2-aligned RNA-seq BAM with reference annotation with verbose output?
stringtie,stringtie_06,stringtie_06_03,student,I need to assemble transcripts from HISAT2-aligned RNA-seq BAM with reference annotation with verbose output
stringtie,stringtie_06,stringtie_06_04,polite,Please assemble transcripts from HISAT2-aligned RNA-seq BAM with reference annotation with verbose output
stringtie,stringtie_06,stringtie_06_05,sysadmin,Use stringtie to assemble transcripts from HISAT2-aligned RNA-seq BAM with reference annotation with verbose output
stringtie,stringtie_06,stringtie_06_06,goal_oriented,I want to assemble transcripts from HISAT2-aligned RNA-seq BAM with reference annotation with verbose output
stringtie,stringtie_06,stringtie_06_07,expert,assemble transcripts HISAT2-aligned RNA-seq BAM reference annotation verbose output
stringtie,stringtie_06,stringtie_06_08,detailed,"I have data that I need to process: assemble transcripts from HISAT2-aligned RNA-seq BAM with reference annotation with verbose output, utilizing multiple CPU threads for speed, saving the result to a specified output file"
stringtie,stringtie_06,stringtie_06_09,informal,"Hey, can you help me assemble transcripts from HISAT2-aligned RNA-seq BAM with reference annotation with verbose output?"
stringtie,stringtie_06,stringtie_06_10,alternative,"With reference annotation with verbose output, assemble transcripts from HISAT2-aligned RNA-seq BAM"
stringtie,stringtie_07,stringtie_07_01,original,merge per-sample StringTie GTFs into unified transcript catalog using multiple threads
stringtie,stringtie_07,stringtie_07_02,beginner,How do I merge per-sample StringTie GTFs into unified transcript catalog using multiple threads?
stringtie,stringtie_07,stringtie_07_03,student,I need to merge per-sample StringTie GTFs into unified transcript catalog using multiple threads
stringtie,stringtie_07,stringtie_07_04,polite,Please merge per-sample StringTie GTFs into unified transcript catalog using multiple threads
stringtie,stringtie_07,stringtie_07_05,sysadmin,Use stringtie to merge per-sample StringTie GTFs into unified transcript catalog using multiple threads
stringtie,stringtie_07,stringtie_07_06,goal_oriented,I want to merge per-sample StringTie GTFs into unified transcript catalog using multiple threads
stringtie,stringtie_07,stringtie_07_07,expert,merge per-sample StringTie GTFs unified transcript catalog multiple threads
stringtie,stringtie_07,stringtie_07_08,detailed,"I have data that I need to process: merge per-sample StringTie GTFs into unified transcript catalog using multiple threads, utilizing multiple CPU threads for speed, saving the result to a specified output file"
stringtie,stringtie_07,stringtie_07_09,informal,"Hey, can you help me merge per-sample StringTie GTFs into unified transcript catalog using multiple threads?"
stringtie,stringtie_07,stringtie_07_10,alternative,Perform: merge per-sample StringTie GTFs into unified transcript catalog using multiple threads
stringtie,stringtie_08,stringtie_08_01,original,re-quantify known and assembled transcripts using merged annotation (for count extraction) and write output to a file
stringtie,stringtie_08,stringtie_08_02,beginner,How do I re-quantify known and assembled transcripts using merged annotation (for count extraction) and write output to a file?
stringtie,stringtie_08,stringtie_08_03,student,I need to re-quantify known and assembled transcripts using merged annotation (for count extraction) and write output to a file
stringtie,stringtie_08,stringtie_08_04,polite,Please re-quantify known and assembled transcripts using merged annotation (for count extraction) and write output to a file
stringtie,stringtie_08,stringtie_08_05,sysadmin,Use stringtie to re-quantify known and assembled transcripts using merged annotation (for count extraction) and write output to a file
stringtie,stringtie_08,stringtie_08_06,goal_oriented,I want to re-quantify known and assembled transcripts using merged annotation (for count extraction) and write output to a file
stringtie,stringtie_08,stringtie_08_07,expert,re-quantify known assembled transcripts merged annotation (for count extraction) write output file
stringtie,stringtie_08,stringtie_08_08,detailed,"I have data that I need to process: re-quantify known and assembled transcripts using merged annotation (for count extraction) and write output to a file, utilizing multiple CPU threads for speed, saving the result to a specified output file"
stringtie,stringtie_08,stringtie_08_09,informal,"Hey, can you help me re-quantify known and assembled transcripts using merged annotation (for count extraction) and write output to a file?"
stringtie,stringtie_08,stringtie_08_10,alternative,Assembled transcripts using merged annotation (for count extraction) and write output to a file after re-quantify known
stringtie,stringtie_09,stringtie_09_01,original,assemble and quantify without reference annotation (novel transcript discovery) in quiet mode
stringtie,stringtie_09,stringtie_09_02,beginner,How do I assemble and quantify without reference annotation (novel transcript discovery) in quiet mode?
stringtie,stringtie_09,stringtie_09_03,student,I need to assemble and quantify without reference annotation (novel transcript discovery) in quiet mode
stringtie,stringtie_09,stringtie_09_04,polite,Please assemble and quantify without reference annotation (novel transcript discovery) in quiet mode
stringtie,stringtie_09,stringtie_09_05,sysadmin,Use stringtie to assemble and quantify without reference annotation (novel transcript discovery) in quiet mode
stringtie,stringtie_09,stringtie_09_06,goal_oriented,I want to assemble and quantify without reference annotation (novel transcript discovery) in quiet mode
stringtie,stringtie_09,stringtie_09_07,expert,assemble quantify without reference annotation (novel transcript discovery) quiet mode
stringtie,stringtie_09,stringtie_09_08,detailed,"I have data that I need to process: assemble and quantify without reference annotation (novel transcript discovery) in quiet mode, utilizing multiple CPU threads for speed, saving the result to a specified output file"
stringtie,stringtie_09,stringtie_09_09,informal,"Hey, can you help me assemble and quantify without reference annotation (novel transcript discovery) in quiet mode?"
stringtie,stringtie_09,stringtie_09_10,alternative,Quantify without reference annotation (novel transcript discovery) in quiet mode after assemble
stringtie,stringtie_10,stringtie_10_01,original,extract count matrix from StringTie -e output for DESeq2 with prepDE.py3 with default parameters
stringtie,stringtie_10,stringtie_10_02,beginner,How do I extract count matrix from StringTie -e output for DESeq2 with prepDE.py3 with default parameters?
stringtie,stringtie_10,stringtie_10_03,student,I need to extract count matrix from StringTie -e output for DESeq2 with prepDE.py3 with default parameters
stringtie,stringtie_10,stringtie_10_04,polite,Please extract count matrix from StringTie -e output for DESeq2 with prepDE.py3 with default parameters
stringtie,stringtie_10,stringtie_10_05,sysadmin,Use stringtie to extract count matrix from StringTie -e output for DESeq2 with prepDE.py3 with default parameters
stringtie,stringtie_10,stringtie_10_06,goal_oriented,I want to extract count matrix from StringTie -e output for DESeq2 with prepDE.py3 with default parameters
stringtie,stringtie_10,stringtie_10_07,expert,extract count matrix StringTie -e output DESeq2 prepDE.py3 default parameters
stringtie,stringtie_10,stringtie_10_08,detailed,I have data that I need to process: extract count matrix from StringTie -e output for DESeq2 with prepDE.py3 with default parameters
stringtie,stringtie_10,stringtie_10_09,informal,"Hey, can you help me extract count matrix from StringTie -e output for DESeq2 with prepDE.py3 with default parameters?"
stringtie,stringtie_10,stringtie_10_10,alternative,"With prepDE.py3 with default parameters, extract count matrix from StringTie -e output for DESeq2"
survivor,survivor_01,survivor_01_01,original,merge SV VCFs from multiple callers requiring support from at least 2 callers
survivor,survivor_01,survivor_01_02,beginner,How do I merge SV VCFs from multiple callers requiring support from at least 2 callers?
survivor,survivor_01,survivor_01_03,student,I need to merge SV VCFs from multiple callers requiring support from at least 2 callers
survivor,survivor_01,survivor_01_04,polite,Please merge SV VCFs from multiple callers requiring support from at least 2 callers
survivor,survivor_01,survivor_01_05,sysadmin,Use survivor to merge SV VCFs from multiple callers requiring support from at least 2 callers
survivor,survivor_01,survivor_01_06,goal_oriented,I want to merge SV VCFs from multiple callers requiring support from at least 2 callers
survivor,survivor_01,survivor_01_07,expert,merge SV VCFs multiple callers requiring support at least 2 callers
survivor,survivor_01,survivor_01_08,detailed,I have data that I need to process: merge SV VCFs from multiple callers requiring support from at least 2 callers
survivor,survivor_01,survivor_01_09,informal,"Hey, can you help me merge SV VCFs from multiple callers requiring support from at least 2 callers?"
survivor,survivor_01,survivor_01_10,alternative,Perform: merge SV VCFs from multiple callers requiring support from at least 2 callers
survivor,survivor_02,survivor_02_01,original,merge SV calls from a single caller across multiple samples
survivor,survivor_02,survivor_02_02,beginner,How do I merge SV calls from a single caller across multiple samples?
survivor,survivor_02,survivor_02_03,student,I need to merge SV calls from a single caller across multiple samples
survivor,survivor_02,survivor_02_04,polite,Please merge SV calls from a single caller across multiple samples
survivor,survivor_02,survivor_02_05,sysadmin,Use survivor to merge SV calls from a single caller across multiple samples
survivor,survivor_02,survivor_02_06,goal_oriented,I want to merge SV calls from a single caller across multiple samples
survivor,survivor_02,survivor_02_07,expert,merge SV calls single caller across multiple samples
survivor,survivor_02,survivor_02_08,detailed,I have data that I need to process: merge SV calls from a single caller across multiple samples
survivor,survivor_02,survivor_02_09,informal,"Hey, can you help me merge SV calls from a single caller across multiple samples?"
survivor,survivor_02,survivor_02_10,alternative,Perform: merge SV calls from a single caller across multiple samples
survivor,survivor_03,survivor_03_01,original,get summary statistics for SVs in a VCF
survivor,survivor_03,survivor_03_02,beginner,How do I get summary statistics for SVs in a VCF?
survivor,survivor_03,survivor_03_03,student,I need to get summary statistics for SVs in a VCF
survivor,survivor_03,survivor_03_04,polite,Please get summary statistics for SVs in a VCF
survivor,survivor_03,survivor_03_05,sysadmin,Use survivor to get summary statistics for SVs in a VCF
survivor,survivor_03,survivor_03_06,goal_oriented,I want to get summary statistics for SVs in a VCF
survivor,survivor_03,survivor_03_07,expert,get summary statistics SVs VCF
survivor,survivor_03,survivor_03_08,detailed,"I have data that I need to process: get summary statistics for SVs in a VCF, saving the result to a specified output file"
survivor,survivor_03,survivor_03_09,informal,"Hey, can you help me get summary statistics for SVs in a VCF?"
survivor,survivor_03,survivor_03_10,alternative,Perform: get summary statistics for SVs in a VCF
survivor,survivor_04,survivor_04_01,original,filter SVs to a high-confidence set by size and minimum quality
survivor,survivor_04,survivor_04_02,beginner,How do I filter SVs to a high-confidence set by size and minimum quality?
survivor,survivor_04,survivor_04_03,student,I need to filter SVs to a high-confidence set by size and minimum quality
survivor,survivor_04,survivor_04_04,polite,Please filter SVs to a high-confidence set by size and minimum quality
survivor,survivor_04,survivor_04_05,sysadmin,Use survivor to filter SVs to a high-confidence set by size and minimum quality
survivor,survivor_04,survivor_04_06,goal_oriented,I want to filter SVs to a high-confidence set by size and minimum quality
survivor,survivor_04,survivor_04_07,expert,filter SVs high-confidence set by size minimum quality
survivor,survivor_04,survivor_04_08,detailed,"I have data that I need to process: filter SVs to a high-confidence set by size and minimum quality, saving the result to a specified output file"
survivor,survivor_04,survivor_04_09,informal,"Hey, can you help me filter SVs to a high-confidence set by size and minimum quality?"
survivor,survivor_04,survivor_04_10,alternative,Minimum quality after filter SVs to a high-confidence set by size
survivor,survivor_05,survivor_05_01,original,simulate structural variants on a reference genome for benchmarking
survivor,survivor_05,survivor_05_02,beginner,How do I simulate structural variants on a reference genome for benchmarking?
survivor,survivor_05,survivor_05_03,student,I need to simulate structural variants on a reference genome for benchmarking
survivor,survivor_05,survivor_05_04,polite,Please simulate structural variants on a reference genome for benchmarking
survivor,survivor_05,survivor_05_05,sysadmin,Use survivor to simulate structural variants on a reference genome for benchmarking
survivor,survivor_05,survivor_05_06,goal_oriented,I want to simulate structural variants on a reference genome for benchmarking
survivor,survivor_05,survivor_05_07,expert,simulate structural variants on reference genome benchmarking
survivor,survivor_05,survivor_05_08,detailed,I have data that I need to process: simulate structural variants on a reference genome for benchmarking
survivor,survivor_05,survivor_05_09,informal,"Hey, can you help me simulate structural variants on a reference genome for benchmarking?"
survivor,survivor_05,survivor_05_10,alternative,Perform: simulate structural variants on a reference genome for benchmarking
survivor,survivor_06,survivor_06_01,original,create a VCF list file and merge three caller outputs
survivor,survivor_06,survivor_06_02,beginner,How do I create a VCF list file and merge three caller outputs?
survivor,survivor_06,survivor_06_03,student,I need to create a VCF list file and merge three caller outputs
survivor,survivor_06,survivor_06_04,polite,Please create a VCF list file and merge three caller outputs
survivor,survivor_06,survivor_06_05,sysadmin,Use survivor to create a VCF list file and merge three caller outputs
survivor,survivor_06,survivor_06_06,goal_oriented,I want to create a VCF list file and merge three caller outputs
survivor,survivor_06,survivor_06_07,expert,create VCF list file merge three caller outputs
survivor,survivor_06,survivor_06_08,detailed,I have data that I need to process: create a VCF list file and merge three caller outputs
survivor,survivor_06,survivor_06_09,informal,"Hey, can you help me create a VCF list file and merge three caller outputs?"
survivor,survivor_06,survivor_06_10,alternative,Merge three caller outputs after create a VCF list file
survivor,survivor_07,survivor_07_01,original,merge SV VCFs from multiple callers requiring support from at least 2 callers using multiple threads
survivor,survivor_07,survivor_07_02,beginner,How do I merge SV VCFs from multiple callers requiring support from at least 2 callers using multiple threads?
survivor,survivor_07,survivor_07_03,student,I need to merge SV VCFs from multiple callers requiring support from at least 2 callers using multiple threads
survivor,survivor_07,survivor_07_04,polite,Please merge SV VCFs from multiple callers requiring support from at least 2 callers using multiple threads
survivor,survivor_07,survivor_07_05,sysadmin,Use survivor to merge SV VCFs from multiple callers requiring support from at least 2 callers using multiple threads
survivor,survivor_07,survivor_07_06,goal_oriented,I want to merge SV VCFs from multiple callers requiring support from at least 2 callers using multiple threads
survivor,survivor_07,survivor_07_07,expert,merge SV VCFs multiple callers requiring support at least 2 callers multiple threads
survivor,survivor_07,survivor_07_08,detailed,"I have data that I need to process: merge SV VCFs from multiple callers requiring support from at least 2 callers using multiple threads, utilizing multiple CPU threads for speed"
survivor,survivor_07,survivor_07_09,informal,"Hey, can you help me merge SV VCFs from multiple callers requiring support from at least 2 callers using multiple threads?"
survivor,survivor_07,survivor_07_10,alternative,Perform: merge SV VCFs from multiple callers requiring support from at least 2 callers using multiple threads
survivor,survivor_08,survivor_08_01,original,merge SV calls from a single caller across multiple samples and write output to a file
survivor,survivor_08,survivor_08_02,beginner,How do I merge SV calls from a single caller across multiple samples and write output to a file?
survivor,survivor_08,survivor_08_03,student,I need to merge SV calls from a single caller across multiple samples and write output to a file
survivor,survivor_08,survivor_08_04,polite,Please merge SV calls from a single caller across multiple samples and write output to a file
survivor,survivor_08,survivor_08_05,sysadmin,Use survivor to merge SV calls from a single caller across multiple samples and write output to a file
survivor,survivor_08,survivor_08_06,goal_oriented,I want to merge SV calls from a single caller across multiple samples and write output to a file
survivor,survivor_08,survivor_08_07,expert,merge SV calls single caller across multiple samples write output file
survivor,survivor_08,survivor_08_08,detailed,"I have data that I need to process: merge SV calls from a single caller across multiple samples and write output to a file, saving the result to a specified output file"
survivor,survivor_08,survivor_08_09,informal,"Hey, can you help me merge SV calls from a single caller across multiple samples and write output to a file?"
survivor,survivor_08,survivor_08_10,alternative,Write output to a file after merge SV calls from a single caller across multiple samples
survivor,survivor_09,survivor_09_01,original,get summary statistics for SVs in a VCF in quiet mode
survivor,survivor_09,survivor_09_02,beginner,How do I get summary statistics for SVs in a VCF in quiet mode?
survivor,survivor_09,survivor_09_03,student,I need to get summary statistics for SVs in a VCF in quiet mode
survivor,survivor_09,survivor_09_04,polite,Please get summary statistics for SVs in a VCF in quiet mode
survivor,survivor_09,survivor_09_05,sysadmin,Use survivor to get summary statistics for SVs in a VCF in quiet mode
survivor,survivor_09,survivor_09_06,goal_oriented,I want to get summary statistics for SVs in a VCF in quiet mode
survivor,survivor_09,survivor_09_07,expert,get summary statistics SVs VCF quiet mode
survivor,survivor_09,survivor_09_08,detailed,"I have data that I need to process: get summary statistics for SVs in a VCF in quiet mode, saving the result to a specified output file"
survivor,survivor_09,survivor_09_09,informal,"Hey, can you help me get summary statistics for SVs in a VCF in quiet mode?"
survivor,survivor_09,survivor_09_10,alternative,Perform: get summary statistics for SVs in a VCF in quiet mode
survivor,survivor_10,survivor_10_01,original,filter SVs to a high-confidence set by size and minimum quality with default parameters
survivor,survivor_10,survivor_10_02,beginner,How do I filter SVs to a high-confidence set by size and minimum quality with default parameters?
survivor,survivor_10,survivor_10_03,student,I need to filter SVs to a high-confidence set by size and minimum quality with default parameters
survivor,survivor_10,survivor_10_04,polite,Please filter SVs to a high-confidence set by size and minimum quality with default parameters
survivor,survivor_10,survivor_10_05,sysadmin,Use survivor to filter SVs to a high-confidence set by size and minimum quality with default parameters
survivor,survivor_10,survivor_10_06,goal_oriented,I want to filter SVs to a high-confidence set by size and minimum quality with default parameters
survivor,survivor_10,survivor_10_07,expert,filter SVs high-confidence set by size minimum quality default parameters
survivor,survivor_10,survivor_10_08,detailed,"I have data that I need to process: filter SVs to a high-confidence set by size and minimum quality with default parameters, saving the result to a specified output file"
survivor,survivor_10,survivor_10_09,informal,"Hey, can you help me filter SVs to a high-confidence set by size and minimum quality with default parameters?"
survivor,survivor_10,survivor_10_10,alternative,Minimum quality with default parameters after filter SVs to a high-confidence set by size
tabix,tabix_01,tabix_01_01,original,compress a VCF file with bgzip and create tabix index
tabix,tabix_01,tabix_01_02,beginner,How do I compress a VCF file with bgzip and create tabix index?
tabix,tabix_01,tabix_01_03,student,I need to compress a VCF file with bgzip and create tabix index
tabix,tabix_01,tabix_01_04,polite,Please compress a VCF file with bgzip and create tabix index
tabix,tabix_01,tabix_01_05,sysadmin,Use tabix to compress a VCF file with bgzip and create tabix index
tabix,tabix_01,tabix_01_06,goal_oriented,I want to compress a VCF file with bgzip and create tabix index
tabix,tabix_01,tabix_01_07,expert,compress VCF file bgzip create tabix index
tabix,tabix_01,tabix_01_08,detailed,I have data that I need to process: compress a VCF file with bgzip and create tabix index
tabix,tabix_01,tabix_01_09,informal,"Hey, can you help me compress a VCF file with bgzip and create tabix index?"
tabix,tabix_01,tabix_01_10,alternative,Create tabix index after compress a VCF file with bgzip
tabix,tabix_02,tabix_02_01,original,create tabix index for a bgzipped VCF file
tabix,tabix_02,tabix_02_02,beginner,How do I create tabix index for a bgzipped VCF file?
tabix,tabix_02,tabix_02_03,student,I need to create tabix index for a bgzipped VCF file
tabix,tabix_02,tabix_02_04,polite,Please create tabix index for a bgzipped VCF file
tabix,tabix_02,tabix_02_05,sysadmin,Use tabix to create tabix index for a bgzipped VCF file
tabix,tabix_02,tabix_02_06,goal_oriented,I want to create tabix index for a bgzipped VCF file
tabix,tabix_02,tabix_02_07,expert,create tabix index bgzipped VCF file
tabix,tabix_02,tabix_02_08,detailed,"I have data that I need to process: create tabix index for a bgzipped VCF file, utilizing multiple CPU threads for speed"
tabix,tabix_02,tabix_02_09,informal,"Hey, can you help me create tabix index for a bgzipped VCF file?"
tabix,tabix_02,tabix_02_10,alternative,Perform: create tabix index for a bgzipped VCF file
tabix,tabix_03,tabix_03_01,original,query a specific genomic region from an indexed VCF
tabix,tabix_03,tabix_03_02,beginner,How do I query a specific genomic region from an indexed VCF?
tabix,tabix_03,tabix_03_03,student,I need to query a specific genomic region from an indexed VCF
tabix,tabix_03,tabix_03_04,polite,Please query a specific genomic region from an indexed VCF
tabix,tabix_03,tabix_03_05,sysadmin,Use tabix to query a specific genomic region from an indexed VCF
tabix,tabix_03,tabix_03_06,goal_oriented,I want to query a specific genomic region from an indexed VCF
tabix,tabix_03,tabix_03_07,expert,query specific genomic region indexed VCF
tabix,tabix_03,tabix_03_08,detailed,I have data that I need to process: query a specific genomic region from an indexed VCF
tabix,tabix_03,tabix_03_09,informal,"Hey, can you help me query a specific genomic region from an indexed VCF?"
tabix,tabix_03,tabix_03_10,alternative,Perform: query a specific genomic region from an indexed VCF
tabix,tabix_04,tabix_04_01,original,create tabix index for a bgzipped BED file
tabix,tabix_04,tabix_04_02,beginner,How do I create tabix index for a bgzipped BED file?
tabix,tabix_04,tabix_04_03,student,I need to create tabix index for a bgzipped BED file
tabix,tabix_04,tabix_04_04,polite,Please create tabix index for a bgzipped BED file
tabix,tabix_04,tabix_04_05,sysadmin,Use tabix to create tabix index for a bgzipped BED file
tabix,tabix_04,tabix_04_06,goal_oriented,I want to create tabix index for a bgzipped BED file
tabix,tabix_04,tabix_04_07,expert,create tabix index bgzipped BED file
tabix,tabix_04,tabix_04_08,detailed,"I have data that I need to process: create tabix index for a bgzipped BED file, utilizing multiple CPU threads for speed"
tabix,tabix_04,tabix_04_09,informal,"Hey, can you help me create tabix index for a bgzipped BED file?"
tabix,tabix_04,tabix_04_10,alternative,Perform: create tabix index for a bgzipped BED file
tabix,tabix_05,tabix_05_01,original,list all chromosomes/contigs in an indexed VCF
tabix,tabix_05,tabix_05_02,beginner,How do I list all chromosomes/contigs in an indexed VCF?
tabix,tabix_05,tabix_05_03,student,I need to list all chromosomes/contigs in an indexed VCF
tabix,tabix_05,tabix_05_04,polite,Please list all chromosomes/contigs in an indexed VCF
tabix,tabix_05,tabix_05_05,sysadmin,Use tabix to list all chromosomes/contigs in an indexed VCF
tabix,tabix_05,tabix_05_06,goal_oriented,I want to list all chromosomes/contigs in an indexed VCF
tabix,tabix_05,tabix_05_07,expert,list all chromosomes/contigs indexed VCF
tabix,tabix_05,tabix_05_08,detailed,I have data that I need to process: list all chromosomes/contigs in an indexed VCF
tabix,tabix_05,tabix_05_09,informal,"Hey, can you help me list all chromosomes/contigs in an indexed VCF?"
tabix,tabix_05,tabix_05_10,alternative,Perform: list all chromosomes/contigs in an indexed VCF
tabix,tabix_06,tabix_06_01,original,create a CSI index for large genomes with contigs >512 Mb
tabix,tabix_06,tabix_06_02,beginner,How do I create a CSI index for large genomes with contigs >512 Mb?
tabix,tabix_06,tabix_06_03,student,I need to create a CSI index for large genomes with contigs >512 Mb
tabix,tabix_06,tabix_06_04,polite,Please create a CSI index for large genomes with contigs >512 Mb
tabix,tabix_06,tabix_06_05,sysadmin,Use tabix to create a CSI index for large genomes with contigs >512 Mb
tabix,tabix_06,tabix_06_06,goal_oriented,I want to create a CSI index for large genomes with contigs >512 Mb
tabix,tabix_06,tabix_06_07,expert,create CSI index large genomes contigs >512 Mb
tabix,tabix_06,tabix_06_08,detailed,I have data that I need to process: create a CSI index for large genomes with contigs >512 Mb
tabix,tabix_06,tabix_06_09,informal,"Hey, can you help me create a CSI index for large genomes with contigs >512 Mb?"
tabix,tabix_06,tabix_06_10,alternative,"With contigs >512 Mb, create a CSI index for large genomes"
tabix,tabix_07,tabix_07_01,original,query multiple regions at once from an indexed VCF
tabix,tabix_07,tabix_07_02,beginner,How do I query multiple regions at once from an indexed VCF?
tabix,tabix_07,tabix_07_03,student,I need to query multiple regions at once from an indexed VCF
tabix,tabix_07,tabix_07_04,polite,Please query multiple regions at once from an indexed VCF
tabix,tabix_07,tabix_07_05,sysadmin,Use tabix to query multiple regions at once from an indexed VCF
tabix,tabix_07,tabix_07_06,goal_oriented,I want to query multiple regions at once from an indexed VCF
tabix,tabix_07,tabix_07_07,expert,query multiple regions at once indexed VCF
tabix,tabix_07,tabix_07_08,detailed,I have data that I need to process: query multiple regions at once from an indexed VCF
tabix,tabix_07,tabix_07_09,informal,"Hey, can you help me query multiple regions at once from an indexed VCF?"
tabix,tabix_07,tabix_07_10,alternative,Perform: query multiple regions at once from an indexed VCF
tabix,tabix_08,tabix_08_01,original,index a bgzipped GFF3 annotation file
tabix,tabix_08,tabix_08_02,beginner,How do I index a bgzipped GFF3 annotation file?
tabix,tabix_08,tabix_08_03,student,I need to index a bgzipped GFF3 annotation file
tabix,tabix_08,tabix_08_04,polite,Please index a bgzipped GFF3 annotation file
tabix,tabix_08,tabix_08_05,sysadmin,Use tabix to index a bgzipped GFF3 annotation file
tabix,tabix_08,tabix_08_06,goal_oriented,I want to index a bgzipped GFF3 annotation file
tabix,tabix_08,tabix_08_07,expert,index bgzipped GFF3 annotation file
tabix,tabix_08,tabix_08_08,detailed,"I have data that I need to process: index a bgzipped GFF3 annotation file, utilizing multiple CPU threads for speed"
tabix,tabix_08,tabix_08_09,informal,"Hey, can you help me index a bgzipped GFF3 annotation file?"
tabix,tabix_08,tabix_08_10,alternative,Perform: index a bgzipped GFF3 annotation file
tabix,tabix_09,tabix_09_01,original,fetch a remote indexed VCF region without downloading the whole file
tabix,tabix_09,tabix_09_02,beginner,How do I fetch a remote indexed VCF region without downloading the whole file?
tabix,tabix_09,tabix_09_03,student,I need to fetch a remote indexed VCF region without downloading the whole file
tabix,tabix_09,tabix_09_04,polite,Please fetch a remote indexed VCF region without downloading the whole file
tabix,tabix_09,tabix_09_05,sysadmin,Use tabix to fetch a remote indexed VCF region without downloading the whole file
tabix,tabix_09,tabix_09_06,goal_oriented,I want to fetch a remote indexed VCF region without downloading the whole file
tabix,tabix_09,tabix_09_07,expert,fetch remote indexed VCF region without downloading whole file
tabix,tabix_09,tabix_09_08,detailed,I have data that I need to process: fetch a remote indexed VCF region without downloading the whole file
tabix,tabix_09,tabix_09_09,informal,"Hey, can you help me fetch a remote indexed VCF region without downloading the whole file?"
tabix,tabix_09,tabix_09_10,alternative,Perform: fetch a remote indexed VCF region without downloading the whole file
tabix,tabix_10,tabix_10_01,original,reindex a tabix file using a custom sequence dictionary order
tabix,tabix_10,tabix_10_02,beginner,How do I reindex a tabix file using a custom sequence dictionary order?
tabix,tabix_10,tabix_10_03,student,I need to reindex a tabix file using a custom sequence dictionary order
tabix,tabix_10,tabix_10_04,polite,Please reindex a tabix file using a custom sequence dictionary order
tabix,tabix_10,tabix_10_05,sysadmin,Use tabix to reindex a tabix file using a custom sequence dictionary order
tabix,tabix_10,tabix_10_06,goal_oriented,I want to reindex a tabix file using a custom sequence dictionary order
tabix,tabix_10,tabix_10_07,expert,reindex tabix file custom sequence dictionary order
tabix,tabix_10,tabix_10_08,detailed,I have data that I need to process: reindex a tabix file using a custom sequence dictionary order
tabix,tabix_10,tabix_10_09,informal,"Hey, can you help me reindex a tabix file using a custom sequence dictionary order?"
tabix,tabix_10,tabix_10_10,alternative,Perform: reindex a tabix file using a custom sequence dictionary order
tar,tar_01,tar_01_01,original,create a gzip-compressed archive of a directory
tar,tar_01,tar_01_02,beginner,How do I create a gzip-compressed archive of a directory?
tar,tar_01,tar_01_03,student,I need to create a gzip-compressed archive of a directory
tar,tar_01,tar_01_04,polite,Please create a gzip-compressed archive of a directory
tar,tar_01,tar_01_05,sysadmin,Use tar to create a gzip-compressed archive of a directory
tar,tar_01,tar_01_06,goal_oriented,I want to create a gzip-compressed archive of a directory
tar,tar_01,tar_01_07,expert,create gzip-compressed archive of directory
tar,tar_01,tar_01_08,detailed,I have data that I need to process: create a gzip-compressed archive of a directory
tar,tar_01,tar_01_09,informal,"Hey, can you help me create a gzip-compressed archive of a directory?"
tar,tar_01,tar_01_10,alternative,Perform: create a gzip-compressed archive of a directory
tar,tar_02,tar_02_01,original,extract a gzip archive into the current directory
tar,tar_02,tar_02_02,beginner,How do I extract a gzip archive into the current directory?
tar,tar_02,tar_02_03,student,I need to extract a gzip archive into the current directory
tar,tar_02,tar_02_04,polite,Please extract a gzip archive into the current directory
tar,tar_02,tar_02_05,sysadmin,Use tar to extract a gzip archive into the current directory
tar,tar_02,tar_02_06,goal_oriented,I want to extract a gzip archive into the current directory
tar,tar_02,tar_02_07,expert,extract gzip archive current directory
tar,tar_02,tar_02_08,detailed,I have data that I need to process: extract a gzip archive into the current directory
tar,tar_02,tar_02_09,informal,"Hey, can you help me extract a gzip archive into the current directory?"
tar,tar_02,tar_02_10,alternative,Perform: extract a gzip archive into the current directory
tar,tar_03,tar_03_01,original,extract an archive into a specific directory
tar,tar_03,tar_03_02,beginner,How do I extract an archive into a specific directory?
tar,tar_03,tar_03_03,student,I need to extract an archive into a specific directory
tar,tar_03,tar_03_04,polite,Please extract an archive into a specific directory
tar,tar_03,tar_03_05,sysadmin,Use tar to extract an archive into a specific directory
tar,tar_03,tar_03_06,goal_oriented,I want to extract an archive into a specific directory
tar,tar_03,tar_03_07,expert,extract archive specific directory
tar,tar_03,tar_03_08,detailed,I have data that I need to process: extract an archive into a specific directory
tar,tar_03,tar_03_09,informal,"Hey, can you help me extract an archive into a specific directory?"
tar,tar_03,tar_03_10,alternative,Perform: extract an archive into a specific directory
tar,tar_04,tar_04_01,original,list contents of an archive without extracting
tar,tar_04,tar_04_02,beginner,How do I list contents of an archive without extracting?
tar,tar_04,tar_04_03,student,I need to list contents of an archive without extracting
tar,tar_04,tar_04_04,polite,Please list contents of an archive without extracting
tar,tar_04,tar_04_05,sysadmin,Use tar to list contents of an archive without extracting
tar,tar_04,tar_04_06,goal_oriented,I want to list contents of an archive without extracting
tar,tar_04,tar_04_07,expert,list contents of archive without extracting
tar,tar_04,tar_04_08,detailed,I have data that I need to process: list contents of an archive without extracting
tar,tar_04,tar_04_09,informal,"Hey, can you help me list contents of an archive without extracting?"
tar,tar_04,tar_04_10,alternative,Perform: list contents of an archive without extracting
tar,tar_05,tar_05_01,original,create a verbose bzip2-compressed archive
tar,tar_05,tar_05_02,beginner,How do I create a verbose bzip2-compressed archive?
tar,tar_05,tar_05_03,student,I need to create a verbose bzip2-compressed archive
tar,tar_05,tar_05_04,polite,Please create a verbose bzip2-compressed archive
tar,tar_05,tar_05_05,sysadmin,Use tar to create a verbose bzip2-compressed archive
tar,tar_05,tar_05_06,goal_oriented,I want to create a verbose bzip2-compressed archive
tar,tar_05,tar_05_07,expert,create verbose bzip2-compressed archive
tar,tar_05,tar_05_08,detailed,I have data that I need to process: create a verbose bzip2-compressed archive
tar,tar_05,tar_05_09,informal,"Hey, can you help me create a verbose bzip2-compressed archive?"
tar,tar_05,tar_05_10,alternative,Perform: create a verbose bzip2-compressed archive
tar,tar_06,tar_06_01,original,extract and strip the top-level directory from the archive
tar,tar_06,tar_06_02,beginner,How do I extract and strip the top-level directory from the archive?
tar,tar_06,tar_06_03,student,I need to extract and strip the top-level directory from the archive
tar,tar_06,tar_06_04,polite,Please extract and strip the top-level directory from the archive
tar,tar_06,tar_06_05,sysadmin,Use tar to extract and strip the top-level directory from the archive
tar,tar_06,tar_06_06,goal_oriented,I want to extract and strip the top-level directory from the archive
tar,tar_06,tar_06_07,expert,extract strip top-level directory archive
tar,tar_06,tar_06_08,detailed,I have data that I need to process: extract and strip the top-level directory from the archive
tar,tar_06,tar_06_09,informal,"Hey, can you help me extract and strip the top-level directory from the archive?"
tar,tar_06,tar_06_10,alternative,Strip the top-level directory from the archive after extract
tar,tar_07,tar_07_01,original,create an archive excluding certain file patterns
tar,tar_07,tar_07_02,beginner,How do I create an archive excluding certain file patterns?
tar,tar_07,tar_07_03,student,I need to create an archive excluding certain file patterns
tar,tar_07,tar_07_04,polite,Please create an archive excluding certain file patterns
tar,tar_07,tar_07_05,sysadmin,Use tar to create an archive excluding certain file patterns
tar,tar_07,tar_07_06,goal_oriented,I want to create an archive excluding certain file patterns
tar,tar_07,tar_07_07,expert,create archive excluding certain file patterns
tar,tar_07,tar_07_08,detailed,I have data that I need to process: create an archive excluding certain file patterns
tar,tar_07,tar_07_09,informal,"Hey, can you help me create an archive excluding certain file patterns?"
tar,tar_07,tar_07_10,alternative,Perform: create an archive excluding certain file patterns
tar,tar_08,tar_08_01,original,add files to an existing uncompressed archive
tar,tar_08,tar_08_02,beginner,How do I add files to an existing uncompressed archive?
tar,tar_08,tar_08_03,student,I need to add files to an existing uncompressed archive
tar,tar_08,tar_08_04,polite,Please add files to an existing uncompressed archive
tar,tar_08,tar_08_05,sysadmin,Use tar to add files to an existing uncompressed archive
tar,tar_08,tar_08_06,goal_oriented,I want to add files to an existing uncompressed archive
tar,tar_08,tar_08_07,expert,add files existing uncompressed archive
tar,tar_08,tar_08_08,detailed,I have data that I need to process: add files to an existing uncompressed archive
tar,tar_08,tar_08_09,informal,"Hey, can you help me add files to an existing uncompressed archive?"
tar,tar_08,tar_08_10,alternative,Output an existing uncompressed archive by performing: add files
tar,tar_09,tar_09_01,original,create a highly compressed archive using xz
tar,tar_09,tar_09_02,beginner,How do I create a highly compressed archive using xz?
tar,tar_09,tar_09_03,student,I need to create a highly compressed archive using xz
tar,tar_09,tar_09_04,polite,Please create a highly compressed archive using xz
tar,tar_09,tar_09_05,sysadmin,Use tar to create a highly compressed archive using xz
tar,tar_09,tar_09_06,goal_oriented,I want to create a highly compressed archive using xz
tar,tar_09,tar_09_07,expert,create highly compressed archive xz
tar,tar_09,tar_09_08,detailed,I have data that I need to process: create a highly compressed archive using xz
tar,tar_09,tar_09_09,informal,"Hey, can you help me create a highly compressed archive using xz?"
tar,tar_09,tar_09_10,alternative,Perform: create a highly compressed archive using xz
tar,tar_10,tar_10_01,original,extract a single file from an archive
tar,tar_10,tar_10_02,beginner,How do I extract a single file from an archive?
tar,tar_10,tar_10_03,student,I need to extract a single file from an archive
tar,tar_10,tar_10_04,polite,Please extract a single file from an archive
tar,tar_10,tar_10_05,sysadmin,Use tar to extract a single file from an archive
tar,tar_10,tar_10_06,goal_oriented,I want to extract a single file from an archive
tar,tar_10,tar_10_07,expert,extract single file archive
tar,tar_10,tar_10_08,detailed,I have data that I need to process: extract a single file from an archive
tar,tar_10,tar_10_09,informal,"Hey, can you help me extract a single file from an archive?"
tar,tar_10,tar_10_10,alternative,Perform: extract a single file from an archive
trim_galore,trim_galore_01,trim_galore_01_01,original,trim adapters and quality-filter paired-end Illumina reads
trim_galore,trim_galore_01,trim_galore_01_02,beginner,How do I trim adapters and quality-filter paired-end Illumina reads?
trim_galore,trim_galore_01,trim_galore_01_03,student,I need to trim adapters and quality-filter paired-end Illumina reads
trim_galore,trim_galore_01,trim_galore_01_04,polite,Please trim adapters and quality-filter paired-end Illumina reads
trim_galore,trim_galore_01,trim_galore_01_05,sysadmin,Use trim_galore to trim adapters and quality-filter paired-end Illumina reads
trim_galore,trim_galore_01,trim_galore_01_06,goal_oriented,I want to trim adapters and quality-filter paired-end Illumina reads
trim_galore,trim_galore_01,trim_galore_01_07,expert,trim adapters quality-filter paired-end Illumina reads
trim_galore,trim_galore_01,trim_galore_01_08,detailed,"I have data that I need to process: trim adapters and quality-filter paired-end Illumina reads, saving the result to a specified output file"
trim_galore,trim_galore_01,trim_galore_01_09,informal,"Hey, can you help me trim adapters and quality-filter paired-end Illumina reads?"
trim_galore,trim_galore_01,trim_galore_01_10,alternative,Quality-filter paired-end Illumina reads after trim adapters
trim_galore,trim_galore_02,trim_galore_02_01,original,trim RRBS bisulfite sequencing data
trim_galore,trim_galore_02,trim_galore_02_02,beginner,How do I trim RRBS bisulfite sequencing data?
trim_galore,trim_galore_02,trim_galore_02_03,student,I need to trim RRBS bisulfite sequencing data
trim_galore,trim_galore_02,trim_galore_02_04,polite,Please trim RRBS bisulfite sequencing data
trim_galore,trim_galore_02,trim_galore_02_05,sysadmin,Use trim_galore to trim RRBS bisulfite sequencing data
trim_galore,trim_galore_02,trim_galore_02_06,goal_oriented,I want to trim RRBS bisulfite sequencing data
trim_galore,trim_galore_02,trim_galore_02_07,expert,trim RRBS bisulfite sequencing data
trim_galore,trim_galore_02,trim_galore_02_08,detailed,"I have data that I need to process: trim RRBS bisulfite sequencing data, saving the result to a specified output file"
trim_galore,trim_galore_02,trim_galore_02_09,informal,"Hey, can you help me trim RRBS bisulfite sequencing data?"
trim_galore,trim_galore_02,trim_galore_02_10,alternative,Perform: trim RRBS bisulfite sequencing data
trim_galore,trim_galore_03,trim_galore_03_01,original,trim single-end reads with automatic adapter detection
trim_galore,trim_galore_03,trim_galore_03_02,beginner,How do I trim single-end reads with automatic adapter detection?
trim_galore,trim_galore_03,trim_galore_03_03,student,I need to trim single-end reads with automatic adapter detection
trim_galore,trim_galore_03,trim_galore_03_04,polite,Please trim single-end reads with automatic adapter detection
trim_galore,trim_galore_03,trim_galore_03_05,sysadmin,Use trim_galore to trim single-end reads with automatic adapter detection
trim_galore,trim_galore_03,trim_galore_03_06,goal_oriented,I want to trim single-end reads with automatic adapter detection
trim_galore,trim_galore_03,trim_galore_03_07,expert,trim single-end reads automatic adapter detection
trim_galore,trim_galore_03,trim_galore_03_08,detailed,"I have data that I need to process: trim single-end reads with automatic adapter detection, saving the result to a specified output file"
trim_galore,trim_galore_03,trim_galore_03_09,informal,"Hey, can you help me trim single-end reads with automatic adapter detection?"
trim_galore,trim_galore_03,trim_galore_03_10,alternative,"With automatic adapter detection, trim single-end reads"
trim_galore,trim_galore_04,trim_galore_04_01,original,trim with specific adapter sequence for non-standard libraries
trim_galore,trim_galore_04,trim_galore_04_02,beginner,How do I trim with specific adapter sequence for non-standard libraries?
trim_galore,trim_galore_04,trim_galore_04_03,student,I need to trim with specific adapter sequence for non-standard libraries
trim_galore,trim_galore_04,trim_galore_04_04,polite,Please trim with specific adapter sequence for non-standard libraries
trim_galore,trim_galore_04,trim_galore_04_05,sysadmin,Use trim_galore to trim with specific adapter sequence for non-standard libraries
trim_galore,trim_galore_04,trim_galore_04_06,goal_oriented,I want to trim with specific adapter sequence for non-standard libraries
trim_galore,trim_galore_04,trim_galore_04_07,expert,trim specific adapter sequence non-standard libraries
trim_galore,trim_galore_04,trim_galore_04_08,detailed,"I have data that I need to process: trim with specific adapter sequence for non-standard libraries, saving the result to a specified output file"
trim_galore,trim_galore_04,trim_galore_04_09,informal,"Hey, can you help me trim with specific adapter sequence for non-standard libraries?"
trim_galore,trim_galore_04,trim_galore_04_10,alternative,"With specific adapter sequence for non-standard libraries, trim"
trim_galore,trim_galore_05,trim_galore_05_01,original,trim adapters and quality-filter paired-end Illumina reads with default parameters
trim_galore,trim_galore_05,trim_galore_05_02,beginner,How do I trim adapters and quality-filter paired-end Illumina reads with default parameters?
trim_galore,trim_galore_05,trim_galore_05_03,student,I need to trim adapters and quality-filter paired-end Illumina reads with default parameters
trim_galore,trim_galore_05,trim_galore_05_04,polite,Please trim adapters and quality-filter paired-end Illumina reads with default parameters
trim_galore,trim_galore_05,trim_galore_05_05,sysadmin,Use trim_galore to trim adapters and quality-filter paired-end Illumina reads with default parameters
trim_galore,trim_galore_05,trim_galore_05_06,goal_oriented,I want to trim adapters and quality-filter paired-end Illumina reads with default parameters
trim_galore,trim_galore_05,trim_galore_05_07,expert,trim adapters quality-filter paired-end Illumina reads default parameters
trim_galore,trim_galore_05,trim_galore_05_08,detailed,"I have data that I need to process: trim adapters and quality-filter paired-end Illumina reads with default parameters, saving the result to a specified output file"
trim_galore,trim_galore_05,trim_galore_05_09,informal,"Hey, can you help me trim adapters and quality-filter paired-end Illumina reads with default parameters?"
trim_galore,trim_galore_05,trim_galore_05_10,alternative,Quality-filter paired-end Illumina reads with default parameters after trim adapters
trim_galore,trim_galore_06,trim_galore_06_01,original,trim RRBS bisulfite sequencing data with verbose output
trim_galore,trim_galore_06,trim_galore_06_02,beginner,How do I trim RRBS bisulfite sequencing data with verbose output?
trim_galore,trim_galore_06,trim_galore_06_03,student,I need to trim RRBS bisulfite sequencing data with verbose output
trim_galore,trim_galore_06,trim_galore_06_04,polite,Please trim RRBS bisulfite sequencing data with verbose output
trim_galore,trim_galore_06,trim_galore_06_05,sysadmin,Use trim_galore to trim RRBS bisulfite sequencing data with verbose output
trim_galore,trim_galore_06,trim_galore_06_06,goal_oriented,I want to trim RRBS bisulfite sequencing data with verbose output
trim_galore,trim_galore_06,trim_galore_06_07,expert,trim RRBS bisulfite sequencing data verbose output
trim_galore,trim_galore_06,trim_galore_06_08,detailed,"I have data that I need to process: trim RRBS bisulfite sequencing data with verbose output, saving the result to a specified output file"
trim_galore,trim_galore_06,trim_galore_06_09,informal,"Hey, can you help me trim RRBS bisulfite sequencing data with verbose output?"
trim_galore,trim_galore_06,trim_galore_06_10,alternative,"With verbose output, trim RRBS bisulfite sequencing data"
trim_galore,trim_galore_07,trim_galore_07_01,original,trim single-end reads with automatic adapter detection using multiple threads
trim_galore,trim_galore_07,trim_galore_07_02,beginner,How do I trim single-end reads with automatic adapter detection using multiple threads?
trim_galore,trim_galore_07,trim_galore_07_03,student,I need to trim single-end reads with automatic adapter detection using multiple threads
trim_galore,trim_galore_07,trim_galore_07_04,polite,Please trim single-end reads with automatic adapter detection using multiple threads
trim_galore,trim_galore_07,trim_galore_07_05,sysadmin,Use trim_galore to trim single-end reads with automatic adapter detection using multiple threads
trim_galore,trim_galore_07,trim_galore_07_06,goal_oriented,I want to trim single-end reads with automatic adapter detection using multiple threads
trim_galore,trim_galore_07,trim_galore_07_07,expert,trim single-end reads automatic adapter detection multiple threads
trim_galore,trim_galore_07,trim_galore_07_08,detailed,"I have data that I need to process: trim single-end reads with automatic adapter detection using multiple threads, utilizing multiple CPU threads for speed, saving the result to a specified output file"
trim_galore,trim_galore_07,trim_galore_07_09,informal,"Hey, can you help me trim single-end reads with automatic adapter detection using multiple threads?"
trim_galore,trim_galore_07,trim_galore_07_10,alternative,"With automatic adapter detection using multiple threads, trim single-end reads"
trim_galore,trim_galore_08,trim_galore_08_01,original,trim with specific adapter sequence for non-standard libraries and write output to a file
trim_galore,trim_galore_08,trim_galore_08_02,beginner,How do I trim with specific adapter sequence for non-standard libraries and write output to a file?
trim_galore,trim_galore_08,trim_galore_08_03,student,I need to trim with specific adapter sequence for non-standard libraries and write output to a file
trim_galore,trim_galore_08,trim_galore_08_04,polite,Please trim with specific adapter sequence for non-standard libraries and write output to a file
trim_galore,trim_galore_08,trim_galore_08_05,sysadmin,Use trim_galore to trim with specific adapter sequence for non-standard libraries and write output to a file
trim_galore,trim_galore_08,trim_galore_08_06,goal_oriented,I want to trim with specific adapter sequence for non-standard libraries and write output to a file
trim_galore,trim_galore_08,trim_galore_08_07,expert,trim specific adapter sequence non-standard libraries write output file
trim_galore,trim_galore_08,trim_galore_08_08,detailed,"I have data that I need to process: trim with specific adapter sequence for non-standard libraries and write output to a file, saving the result to a specified output file"
trim_galore,trim_galore_08,trim_galore_08_09,informal,"Hey, can you help me trim with specific adapter sequence for non-standard libraries and write output to a file?"
trim_galore,trim_galore_08,trim_galore_08_10,alternative,Write output to a file after trim with specific adapter sequence for non-standard libraries
trim_galore,trim_galore_09,trim_galore_09_01,original,trim adapters and quality-filter paired-end Illumina reads in quiet mode
trim_galore,trim_galore_09,trim_galore_09_02,beginner,How do I trim adapters and quality-filter paired-end Illumina reads in quiet mode?
trim_galore,trim_galore_09,trim_galore_09_03,student,I need to trim adapters and quality-filter paired-end Illumina reads in quiet mode
trim_galore,trim_galore_09,trim_galore_09_04,polite,Please trim adapters and quality-filter paired-end Illumina reads in quiet mode
trim_galore,trim_galore_09,trim_galore_09_05,sysadmin,Use trim_galore to trim adapters and quality-filter paired-end Illumina reads in quiet mode
trim_galore,trim_galore_09,trim_galore_09_06,goal_oriented,I want to trim adapters and quality-filter paired-end Illumina reads in quiet mode
trim_galore,trim_galore_09,trim_galore_09_07,expert,trim adapters quality-filter paired-end Illumina reads quiet mode
trim_galore,trim_galore_09,trim_galore_09_08,detailed,"I have data that I need to process: trim adapters and quality-filter paired-end Illumina reads in quiet mode, saving the result to a specified output file"
trim_galore,trim_galore_09,trim_galore_09_09,informal,"Hey, can you help me trim adapters and quality-filter paired-end Illumina reads in quiet mode?"
trim_galore,trim_galore_09,trim_galore_09_10,alternative,Quality-filter paired-end Illumina reads in quiet mode after trim adapters
trim_galore,trim_galore_10,trim_galore_10_01,original,trim RRBS bisulfite sequencing data with default parameters
trim_galore,trim_galore_10,trim_galore_10_02,beginner,How do I trim RRBS bisulfite sequencing data with default parameters?
trim_galore,trim_galore_10,trim_galore_10_03,student,I need to trim RRBS bisulfite sequencing data with default parameters
trim_galore,trim_galore_10,trim_galore_10_04,polite,Please trim RRBS bisulfite sequencing data with default parameters
trim_galore,trim_galore_10,trim_galore_10_05,sysadmin,Use trim_galore to trim RRBS bisulfite sequencing data with default parameters
trim_galore,trim_galore_10,trim_galore_10_06,goal_oriented,I want to trim RRBS bisulfite sequencing data with default parameters
trim_galore,trim_galore_10,trim_galore_10_07,expert,trim RRBS bisulfite sequencing data default parameters
trim_galore,trim_galore_10,trim_galore_10_08,detailed,"I have data that I need to process: trim RRBS bisulfite sequencing data with default parameters, saving the result to a specified output file"
trim_galore,trim_galore_10,trim_galore_10_09,informal,"Hey, can you help me trim RRBS bisulfite sequencing data with default parameters?"
trim_galore,trim_galore_10,trim_galore_10_10,alternative,"With default parameters, trim RRBS bisulfite sequencing data"
trimmomatic,trimmomatic_01,trimmomatic_01_01,original,trim adapters and quality-filter paired-end Illumina reads
trimmomatic,trimmomatic_01,trimmomatic_01_02,beginner,How do I trim adapters and quality-filter paired-end Illumina reads?
trimmomatic,trimmomatic_01,trimmomatic_01_03,student,I need to trim adapters and quality-filter paired-end Illumina reads
trimmomatic,trimmomatic_01,trimmomatic_01_04,polite,Please trim adapters and quality-filter paired-end Illumina reads
trimmomatic,trimmomatic_01,trimmomatic_01_05,sysadmin,Use trimmomatic to trim adapters and quality-filter paired-end Illumina reads
trimmomatic,trimmomatic_01,trimmomatic_01_06,goal_oriented,I want to trim adapters and quality-filter paired-end Illumina reads
trimmomatic,trimmomatic_01,trimmomatic_01_07,expert,trim adapters quality-filter paired-end Illumina reads
trimmomatic,trimmomatic_01,trimmomatic_01_08,detailed,I have data that I need to process: trim adapters and quality-filter paired-end Illumina reads
trimmomatic,trimmomatic_01,trimmomatic_01_09,informal,"Hey, can you help me trim adapters and quality-filter paired-end Illumina reads?"
trimmomatic,trimmomatic_01,trimmomatic_01_10,alternative,Quality-filter paired-end Illumina reads after trim adapters
trimmomatic,trimmomatic_02,trimmomatic_02_01,original,trim single-end reads with quality filtering
trimmomatic,trimmomatic_02,trimmomatic_02_02,beginner,How do I trim single-end reads with quality filtering?
trimmomatic,trimmomatic_02,trimmomatic_02_03,student,I need to trim single-end reads with quality filtering
trimmomatic,trimmomatic_02,trimmomatic_02_04,polite,Please trim single-end reads with quality filtering
trimmomatic,trimmomatic_02,trimmomatic_02_05,sysadmin,Use trimmomatic to trim single-end reads with quality filtering
trimmomatic,trimmomatic_02,trimmomatic_02_06,goal_oriented,I want to trim single-end reads with quality filtering
trimmomatic,trimmomatic_02,trimmomatic_02_07,expert,trim single-end reads quality filtering
trimmomatic,trimmomatic_02,trimmomatic_02_08,detailed,I have data that I need to process: trim single-end reads with quality filtering
trimmomatic,trimmomatic_02,trimmomatic_02_09,informal,"Hey, can you help me trim single-end reads with quality filtering?"
trimmomatic,trimmomatic_02,trimmomatic_02_10,alternative,"With quality filtering, trim single-end reads"
trimmomatic,trimmomatic_03,trimmomatic_03_01,original,trim Nextera adapters from paired-end reads
trimmomatic,trimmomatic_03,trimmomatic_03_02,beginner,How do I trim Nextera adapters from paired-end reads?
trimmomatic,trimmomatic_03,trimmomatic_03_03,student,I need to trim Nextera adapters from paired-end reads
trimmomatic,trimmomatic_03,trimmomatic_03_04,polite,Please trim Nextera adapters from paired-end reads
trimmomatic,trimmomatic_03,trimmomatic_03_05,sysadmin,Use trimmomatic to trim Nextera adapters from paired-end reads
trimmomatic,trimmomatic_03,trimmomatic_03_06,goal_oriented,I want to trim Nextera adapters from paired-end reads
trimmomatic,trimmomatic_03,trimmomatic_03_07,expert,trim Nextera adapters paired-end reads
trimmomatic,trimmomatic_03,trimmomatic_03_08,detailed,I have data that I need to process: trim Nextera adapters from paired-end reads
trimmomatic,trimmomatic_03,trimmomatic_03_09,informal,"Hey, can you help me trim Nextera adapters from paired-end reads?"
trimmomatic,trimmomatic_03,trimmomatic_03_10,alternative,Perform: trim Nextera adapters from paired-end reads
trimmomatic,trimmomatic_04,trimmomatic_04_01,original,aggressive quality trimming for low-quality paired-end data
trimmomatic,trimmomatic_04,trimmomatic_04_02,beginner,How do I aggressive quality trimming for low-quality paired-end data?
trimmomatic,trimmomatic_04,trimmomatic_04_03,student,I need to aggressive quality trimming for low-quality paired-end data
trimmomatic,trimmomatic_04,trimmomatic_04_04,polite,Please aggressive quality trimming for low-quality paired-end data
trimmomatic,trimmomatic_04,trimmomatic_04_05,sysadmin,Use trimmomatic to aggressive quality trimming for low-quality paired-end data
trimmomatic,trimmomatic_04,trimmomatic_04_06,goal_oriented,I want to aggressive quality trimming for low-quality paired-end data
trimmomatic,trimmomatic_04,trimmomatic_04_07,expert,aggressive quality trimming low-quality paired-end data
trimmomatic,trimmomatic_04,trimmomatic_04_08,detailed,I have data that I need to process: aggressive quality trimming for low-quality paired-end data
trimmomatic,trimmomatic_04,trimmomatic_04_09,informal,"Hey, can you help me aggressive quality trimming for low-quality paired-end data?"
trimmomatic,trimmomatic_04,trimmomatic_04_10,alternative,Perform: aggressive quality trimming for low-quality paired-end data
trimmomatic,trimmomatic_05,trimmomatic_05_01,original,trim adapters and quality-filter paired-end Illumina reads with default parameters
trimmomatic,trimmomatic_05,trimmomatic_05_02,beginner,How do I trim adapters and quality-filter paired-end Illumina reads with default parameters?
trimmomatic,trimmomatic_05,trimmomatic_05_03,student,I need to trim adapters and quality-filter paired-end Illumina reads with default parameters
trimmomatic,trimmomatic_05,trimmomatic_05_04,polite,Please trim adapters and quality-filter paired-end Illumina reads with default parameters
trimmomatic,trimmomatic_05,trimmomatic_05_05,sysadmin,Use trimmomatic to trim adapters and quality-filter paired-end Illumina reads with default parameters
trimmomatic,trimmomatic_05,trimmomatic_05_06,goal_oriented,I want to trim adapters and quality-filter paired-end Illumina reads with default parameters
trimmomatic,trimmomatic_05,trimmomatic_05_07,expert,trim adapters quality-filter paired-end Illumina reads default parameters
trimmomatic,trimmomatic_05,trimmomatic_05_08,detailed,I have data that I need to process: trim adapters and quality-filter paired-end Illumina reads with default parameters
trimmomatic,trimmomatic_05,trimmomatic_05_09,informal,"Hey, can you help me trim adapters and quality-filter paired-end Illumina reads with default parameters?"
trimmomatic,trimmomatic_05,trimmomatic_05_10,alternative,Quality-filter paired-end Illumina reads with default parameters after trim adapters
trimmomatic,trimmomatic_06,trimmomatic_06_01,original,trim single-end reads with quality filtering with verbose output
trimmomatic,trimmomatic_06,trimmomatic_06_02,beginner,How do I trim single-end reads with quality filtering with verbose output?
trimmomatic,trimmomatic_06,trimmomatic_06_03,student,I need to trim single-end reads with quality filtering with verbose output
trimmomatic,trimmomatic_06,trimmomatic_06_04,polite,Please trim single-end reads with quality filtering with verbose output
trimmomatic,trimmomatic_06,trimmomatic_06_05,sysadmin,Use trimmomatic to trim single-end reads with quality filtering with verbose output
trimmomatic,trimmomatic_06,trimmomatic_06_06,goal_oriented,I want to trim single-end reads with quality filtering with verbose output
trimmomatic,trimmomatic_06,trimmomatic_06_07,expert,trim single-end reads quality filtering verbose output
trimmomatic,trimmomatic_06,trimmomatic_06_08,detailed,I have data that I need to process: trim single-end reads with quality filtering with verbose output
trimmomatic,trimmomatic_06,trimmomatic_06_09,informal,"Hey, can you help me trim single-end reads with quality filtering with verbose output?"
trimmomatic,trimmomatic_06,trimmomatic_06_10,alternative,"With quality filtering with verbose output, trim single-end reads"
trimmomatic,trimmomatic_07,trimmomatic_07_01,original,trim Nextera adapters from paired-end reads using multiple threads
trimmomatic,trimmomatic_07,trimmomatic_07_02,beginner,How do I trim Nextera adapters from paired-end reads using multiple threads?
trimmomatic,trimmomatic_07,trimmomatic_07_03,student,I need to trim Nextera adapters from paired-end reads using multiple threads
trimmomatic,trimmomatic_07,trimmomatic_07_04,polite,Please trim Nextera adapters from paired-end reads using multiple threads
trimmomatic,trimmomatic_07,trimmomatic_07_05,sysadmin,Use trimmomatic to trim Nextera adapters from paired-end reads using multiple threads
trimmomatic,trimmomatic_07,trimmomatic_07_06,goal_oriented,I want to trim Nextera adapters from paired-end reads using multiple threads
trimmomatic,trimmomatic_07,trimmomatic_07_07,expert,trim Nextera adapters paired-end reads multiple threads
trimmomatic,trimmomatic_07,trimmomatic_07_08,detailed,"I have data that I need to process: trim Nextera adapters from paired-end reads using multiple threads, utilizing multiple CPU threads for speed"
trimmomatic,trimmomatic_07,trimmomatic_07_09,informal,"Hey, can you help me trim Nextera adapters from paired-end reads using multiple threads?"
trimmomatic,trimmomatic_07,trimmomatic_07_10,alternative,Perform: trim Nextera adapters from paired-end reads using multiple threads
trimmomatic,trimmomatic_08,trimmomatic_08_01,original,aggressive quality trimming for low-quality paired-end data and write output to a file
trimmomatic,trimmomatic_08,trimmomatic_08_02,beginner,How do I aggressive quality trimming for low-quality paired-end data and write output to a file?
trimmomatic,trimmomatic_08,trimmomatic_08_03,student,I need to aggressive quality trimming for low-quality paired-end data and write output to a file
trimmomatic,trimmomatic_08,trimmomatic_08_04,polite,Please aggressive quality trimming for low-quality paired-end data and write output to a file
trimmomatic,trimmomatic_08,trimmomatic_08_05,sysadmin,Use trimmomatic to aggressive quality trimming for low-quality paired-end data and write output to a file
trimmomatic,trimmomatic_08,trimmomatic_08_06,goal_oriented,I want to aggressive quality trimming for low-quality paired-end data and write output to a file
trimmomatic,trimmomatic_08,trimmomatic_08_07,expert,aggressive quality trimming low-quality paired-end data write output file
trimmomatic,trimmomatic_08,trimmomatic_08_08,detailed,"I have data that I need to process: aggressive quality trimming for low-quality paired-end data and write output to a file, saving the result to a specified output file"
trimmomatic,trimmomatic_08,trimmomatic_08_09,informal,"Hey, can you help me aggressive quality trimming for low-quality paired-end data and write output to a file?"
trimmomatic,trimmomatic_08,trimmomatic_08_10,alternative,Write output to a file after aggressive quality trimming for low-quality paired-end data
trimmomatic,trimmomatic_09,trimmomatic_09_01,original,trim adapters and quality-filter paired-end Illumina reads in quiet mode
trimmomatic,trimmomatic_09,trimmomatic_09_02,beginner,How do I trim adapters and quality-filter paired-end Illumina reads in quiet mode?
trimmomatic,trimmomatic_09,trimmomatic_09_03,student,I need to trim adapters and quality-filter paired-end Illumina reads in quiet mode
trimmomatic,trimmomatic_09,trimmomatic_09_04,polite,Please trim adapters and quality-filter paired-end Illumina reads in quiet mode
trimmomatic,trimmomatic_09,trimmomatic_09_05,sysadmin,Use trimmomatic to trim adapters and quality-filter paired-end Illumina reads in quiet mode
trimmomatic,trimmomatic_09,trimmomatic_09_06,goal_oriented,I want to trim adapters and quality-filter paired-end Illumina reads in quiet mode
trimmomatic,trimmomatic_09,trimmomatic_09_07,expert,trim adapters quality-filter paired-end Illumina reads quiet mode
trimmomatic,trimmomatic_09,trimmomatic_09_08,detailed,I have data that I need to process: trim adapters and quality-filter paired-end Illumina reads in quiet mode
trimmomatic,trimmomatic_09,trimmomatic_09_09,informal,"Hey, can you help me trim adapters and quality-filter paired-end Illumina reads in quiet mode?"
trimmomatic,trimmomatic_09,trimmomatic_09_10,alternative,Quality-filter paired-end Illumina reads in quiet mode after trim adapters
trimmomatic,trimmomatic_10,trimmomatic_10_01,original,trim single-end reads with quality filtering with default parameters
trimmomatic,trimmomatic_10,trimmomatic_10_02,beginner,How do I trim single-end reads with quality filtering with default parameters?
trimmomatic,trimmomatic_10,trimmomatic_10_03,student,I need to trim single-end reads with quality filtering with default parameters
trimmomatic,trimmomatic_10,trimmomatic_10_04,polite,Please trim single-end reads with quality filtering with default parameters
trimmomatic,trimmomatic_10,trimmomatic_10_05,sysadmin,Use trimmomatic to trim single-end reads with quality filtering with default parameters
trimmomatic,trimmomatic_10,trimmomatic_10_06,goal_oriented,I want to trim single-end reads with quality filtering with default parameters
trimmomatic,trimmomatic_10,trimmomatic_10_07,expert,trim single-end reads quality filtering default parameters
trimmomatic,trimmomatic_10,trimmomatic_10_08,detailed,I have data that I need to process: trim single-end reads with quality filtering with default parameters
trimmomatic,trimmomatic_10,trimmomatic_10_09,informal,"Hey, can you help me trim single-end reads with quality filtering with default parameters?"
trimmomatic,trimmomatic_10,trimmomatic_10_10,alternative,"With quality filtering with default parameters, trim single-end reads"
trinity,trinity_01,trinity_01_01,original,de novo transcriptome assembly from paired-end RNA-seq reads
trinity,trinity_01,trinity_01_02,beginner,How do I de novo transcriptome assembly from paired-end RNA-seq reads?
trinity,trinity_01,trinity_01_03,student,I need to de novo transcriptome assembly from paired-end RNA-seq reads
trinity,trinity_01,trinity_01_04,polite,Please de novo transcriptome assembly from paired-end RNA-seq reads
trinity,trinity_01,trinity_01_05,sysadmin,Use trinity to de novo transcriptome assembly from paired-end RNA-seq reads
trinity,trinity_01,trinity_01_06,goal_oriented,I want to de novo transcriptome assembly from paired-end RNA-seq reads
trinity,trinity_01,trinity_01_07,expert,de novo transcriptome assembly paired-end RNA-seq reads
trinity,trinity_01,trinity_01_08,detailed,"I have data that I need to process: de novo transcriptome assembly from paired-end RNA-seq reads, saving the result to a specified output file"
trinity,trinity_01,trinity_01_09,informal,"Hey, can you help me de novo transcriptome assembly from paired-end RNA-seq reads?"
trinity,trinity_01,trinity_01_10,alternative,Perform: de novo transcriptome assembly from paired-end RNA-seq reads
trinity,trinity_02,trinity_02_01,original,genome-guided Trinity assembly using STAR alignments
trinity,trinity_02,trinity_02_02,beginner,How do I genome-guided Trinity assembly using STAR alignments?
trinity,trinity_02,trinity_02_03,student,I need to genome-guided Trinity assembly using STAR alignments
trinity,trinity_02,trinity_02_04,polite,Please genome-guided Trinity assembly using STAR alignments
trinity,trinity_02,trinity_02_05,sysadmin,Use trinity to genome-guided Trinity assembly using STAR alignments
trinity,trinity_02,trinity_02_06,goal_oriented,I want to genome-guided Trinity assembly using STAR alignments
trinity,trinity_02,trinity_02_07,expert,genome-guided Trinity assembly STAR alignments
trinity,trinity_02,trinity_02_08,detailed,"I have data that I need to process: genome-guided Trinity assembly using STAR alignments, saving the result to a specified output file"
trinity,trinity_02,trinity_02_09,informal,"Hey, can you help me genome-guided Trinity assembly using STAR alignments?"
trinity,trinity_02,trinity_02_10,alternative,Perform: genome-guided Trinity assembly using STAR alignments
trinity,trinity_03,trinity_03_01,original,de novo assembly from single-end RNA-seq reads
trinity,trinity_03,trinity_03_02,beginner,How do I de novo assembly from single-end RNA-seq reads?
trinity,trinity_03,trinity_03_03,student,I need to de novo assembly from single-end RNA-seq reads
trinity,trinity_03,trinity_03_04,polite,Please de novo assembly from single-end RNA-seq reads
trinity,trinity_03,trinity_03_05,sysadmin,Use trinity to de novo assembly from single-end RNA-seq reads
trinity,trinity_03,trinity_03_06,goal_oriented,I want to de novo assembly from single-end RNA-seq reads
trinity,trinity_03,trinity_03_07,expert,de novo assembly single-end RNA-seq reads
trinity,trinity_03,trinity_03_08,detailed,"I have data that I need to process: de novo assembly from single-end RNA-seq reads, saving the result to a specified output file"
trinity,trinity_03,trinity_03_09,informal,"Hey, can you help me de novo assembly from single-end RNA-seq reads?"
trinity,trinity_03,trinity_03_10,alternative,Perform: de novo assembly from single-end RNA-seq reads
trinity,trinity_04,trinity_04_01,original,Trinity assembly with strand-specific library
trinity,trinity_04,trinity_04_02,beginner,How do I trinity assembly with strand-specific library?
trinity,trinity_04,trinity_04_03,student,I need to trinity assembly with strand-specific library
trinity,trinity_04,trinity_04_04,polite,Please trinity assembly with strand-specific library
trinity,trinity_04,trinity_04_05,sysadmin,Use trinity to trinity assembly with strand-specific library
trinity,trinity_04,trinity_04_06,goal_oriented,I want to trinity assembly with strand-specific library
trinity,trinity_04,trinity_04_07,expert,Trinity assembly strand-specific library
trinity,trinity_04,trinity_04_08,detailed,"I have data that I need to process: Trinity assembly with strand-specific library, saving the result to a specified output file"
trinity,trinity_04,trinity_04_09,informal,"Hey, can you help me trinity assembly with strand-specific library?"
trinity,trinity_04,trinity_04_10,alternative,"With strand-specific library, trinity assembly"
trinity,trinity_05,trinity_05_01,original,de novo transcriptome assembly from paired-end RNA-seq reads with default parameters
trinity,trinity_05,trinity_05_02,beginner,How do I de novo transcriptome assembly from paired-end RNA-seq reads with default parameters?
trinity,trinity_05,trinity_05_03,student,I need to de novo transcriptome assembly from paired-end RNA-seq reads with default parameters
trinity,trinity_05,trinity_05_04,polite,Please de novo transcriptome assembly from paired-end RNA-seq reads with default parameters
trinity,trinity_05,trinity_05_05,sysadmin,Use trinity to de novo transcriptome assembly from paired-end RNA-seq reads with default parameters
trinity,trinity_05,trinity_05_06,goal_oriented,I want to de novo transcriptome assembly from paired-end RNA-seq reads with default parameters
trinity,trinity_05,trinity_05_07,expert,de novo transcriptome assembly paired-end RNA-seq reads default parameters
trinity,trinity_05,trinity_05_08,detailed,"I have data that I need to process: de novo transcriptome assembly from paired-end RNA-seq reads with default parameters, saving the result to a specified output file"
trinity,trinity_05,trinity_05_09,informal,"Hey, can you help me de novo transcriptome assembly from paired-end RNA-seq reads with default parameters?"
trinity,trinity_05,trinity_05_10,alternative,"With default parameters, de novo transcriptome assembly from paired-end RNA-seq reads"
trinity,trinity_06,trinity_06_01,original,genome-guided Trinity assembly using STAR alignments with verbose output
trinity,trinity_06,trinity_06_02,beginner,How do I genome-guided Trinity assembly using STAR alignments with verbose output?
trinity,trinity_06,trinity_06_03,student,I need to genome-guided Trinity assembly using STAR alignments with verbose output
trinity,trinity_06,trinity_06_04,polite,Please genome-guided Trinity assembly using STAR alignments with verbose output
trinity,trinity_06,trinity_06_05,sysadmin,Use trinity to genome-guided Trinity assembly using STAR alignments with verbose output
trinity,trinity_06,trinity_06_06,goal_oriented,I want to genome-guided Trinity assembly using STAR alignments with verbose output
trinity,trinity_06,trinity_06_07,expert,genome-guided Trinity assembly STAR alignments verbose output
trinity,trinity_06,trinity_06_08,detailed,"I have data that I need to process: genome-guided Trinity assembly using STAR alignments with verbose output, saving the result to a specified output file"
trinity,trinity_06,trinity_06_09,informal,"Hey, can you help me genome-guided Trinity assembly using STAR alignments with verbose output?"
trinity,trinity_06,trinity_06_10,alternative,"With verbose output, genome-guided Trinity assembly using STAR alignments"
trinity,trinity_07,trinity_07_01,original,de novo assembly from single-end RNA-seq reads using multiple threads
trinity,trinity_07,trinity_07_02,beginner,How do I de novo assembly from single-end RNA-seq reads using multiple threads?
trinity,trinity_07,trinity_07_03,student,I need to de novo assembly from single-end RNA-seq reads using multiple threads
trinity,trinity_07,trinity_07_04,polite,Please de novo assembly from single-end RNA-seq reads using multiple threads
trinity,trinity_07,trinity_07_05,sysadmin,Use trinity to de novo assembly from single-end RNA-seq reads using multiple threads
trinity,trinity_07,trinity_07_06,goal_oriented,I want to de novo assembly from single-end RNA-seq reads using multiple threads
trinity,trinity_07,trinity_07_07,expert,de novo assembly single-end RNA-seq reads multiple threads
trinity,trinity_07,trinity_07_08,detailed,"I have data that I need to process: de novo assembly from single-end RNA-seq reads using multiple threads, utilizing multiple CPU threads for speed, saving the result to a specified output file"
trinity,trinity_07,trinity_07_09,informal,"Hey, can you help me de novo assembly from single-end RNA-seq reads using multiple threads?"
trinity,trinity_07,trinity_07_10,alternative,Perform: de novo assembly from single-end RNA-seq reads using multiple threads
trinity,trinity_08,trinity_08_01,original,Trinity assembly with strand-specific library and write output to a file
trinity,trinity_08,trinity_08_02,beginner,How do I trinity assembly with strand-specific library and write output to a file?
trinity,trinity_08,trinity_08_03,student,I need to trinity assembly with strand-specific library and write output to a file
trinity,trinity_08,trinity_08_04,polite,Please trinity assembly with strand-specific library and write output to a file
trinity,trinity_08,trinity_08_05,sysadmin,Use trinity to trinity assembly with strand-specific library and write output to a file
trinity,trinity_08,trinity_08_06,goal_oriented,I want to trinity assembly with strand-specific library and write output to a file
trinity,trinity_08,trinity_08_07,expert,Trinity assembly strand-specific library write output file
trinity,trinity_08,trinity_08_08,detailed,"I have data that I need to process: Trinity assembly with strand-specific library and write output to a file, saving the result to a specified output file"
trinity,trinity_08,trinity_08_09,informal,"Hey, can you help me trinity assembly with strand-specific library and write output to a file?"
trinity,trinity_08,trinity_08_10,alternative,Write output to a file after Trinity assembly with strand-specific library
trinity,trinity_09,trinity_09_01,original,de novo transcriptome assembly from paired-end RNA-seq reads in quiet mode
trinity,trinity_09,trinity_09_02,beginner,How do I de novo transcriptome assembly from paired-end RNA-seq reads in quiet mode?
trinity,trinity_09,trinity_09_03,student,I need to de novo transcriptome assembly from paired-end RNA-seq reads in quiet mode
trinity,trinity_09,trinity_09_04,polite,Please de novo transcriptome assembly from paired-end RNA-seq reads in quiet mode
trinity,trinity_09,trinity_09_05,sysadmin,Use trinity to de novo transcriptome assembly from paired-end RNA-seq reads in quiet mode
trinity,trinity_09,trinity_09_06,goal_oriented,I want to de novo transcriptome assembly from paired-end RNA-seq reads in quiet mode
trinity,trinity_09,trinity_09_07,expert,de novo transcriptome assembly paired-end RNA-seq reads quiet mode
trinity,trinity_09,trinity_09_08,detailed,"I have data that I need to process: de novo transcriptome assembly from paired-end RNA-seq reads in quiet mode, saving the result to a specified output file"
trinity,trinity_09,trinity_09_09,informal,"Hey, can you help me de novo transcriptome assembly from paired-end RNA-seq reads in quiet mode?"
trinity,trinity_09,trinity_09_10,alternative,Perform: de novo transcriptome assembly from paired-end RNA-seq reads in quiet mode
trinity,trinity_10,trinity_10_01,original,genome-guided Trinity assembly using STAR alignments with default parameters
trinity,trinity_10,trinity_10_02,beginner,How do I genome-guided Trinity assembly using STAR alignments with default parameters?
trinity,trinity_10,trinity_10_03,student,I need to genome-guided Trinity assembly using STAR alignments with default parameters
trinity,trinity_10,trinity_10_04,polite,Please genome-guided Trinity assembly using STAR alignments with default parameters
trinity,trinity_10,trinity_10_05,sysadmin,Use trinity to genome-guided Trinity assembly using STAR alignments with default parameters
trinity,trinity_10,trinity_10_06,goal_oriented,I want to genome-guided Trinity assembly using STAR alignments with default parameters
trinity,trinity_10,trinity_10_07,expert,genome-guided Trinity assembly STAR alignments default parameters
trinity,trinity_10,trinity_10_08,detailed,"I have data that I need to process: genome-guided Trinity assembly using STAR alignments with default parameters, saving the result to a specified output file"
trinity,trinity_10,trinity_10_09,informal,"Hey, can you help me genome-guided Trinity assembly using STAR alignments with default parameters?"
trinity,trinity_10,trinity_10_10,alternative,"With default parameters, genome-guided Trinity assembly using STAR alignments"
truvari,truvari_01,truvari_01_01,original,benchmark a structural variant caller VCF against a truth set
truvari,truvari_01,truvari_01_02,beginner,How do I benchmark a structural variant caller VCF against a truth set?
truvari,truvari_01,truvari_01_03,student,I need to benchmark a structural variant caller VCF against a truth set
truvari,truvari_01,truvari_01_04,polite,Please benchmark a structural variant caller VCF against a truth set
truvari,truvari_01,truvari_01_05,sysadmin,Use truvari to benchmark a structural variant caller VCF against a truth set
truvari,truvari_01,truvari_01_06,goal_oriented,I want to benchmark a structural variant caller VCF against a truth set
truvari,truvari_01,truvari_01_07,expert,benchmark structural variant caller VCF against truth set
truvari,truvari_01,truvari_01_08,detailed,"I have data that I need to process: benchmark a structural variant caller VCF against a truth set, saving the result to a specified output file"
truvari,truvari_01,truvari_01_09,informal,"Hey, can you help me benchmark a structural variant caller VCF against a truth set?"
truvari,truvari_01,truvari_01_10,alternative,Perform: benchmark a structural variant caller VCF against a truth set
truvari,truvari_02,truvari_02_01,original,benchmark with relaxed position tolerance for long-read SV calls
truvari,truvari_02,truvari_02_02,beginner,How do I benchmark with relaxed position tolerance for long-read SV calls?
truvari,truvari_02,truvari_02_03,student,I need to benchmark with relaxed position tolerance for long-read SV calls
truvari,truvari_02,truvari_02_04,polite,Please benchmark with relaxed position tolerance for long-read SV calls
truvari,truvari_02,truvari_02_05,sysadmin,Use truvari to benchmark with relaxed position tolerance for long-read SV calls
truvari,truvari_02,truvari_02_06,goal_oriented,I want to benchmark with relaxed position tolerance for long-read SV calls
truvari,truvari_02,truvari_02_07,expert,benchmark relaxed position tolerance long-read SV calls
truvari,truvari_02,truvari_02_08,detailed,"I have data that I need to process: benchmark with relaxed position tolerance for long-read SV calls, saving the result to a specified output file"
truvari,truvari_02,truvari_02_09,informal,"Hey, can you help me benchmark with relaxed position tolerance for long-read SV calls?"
truvari,truvari_02,truvari_02_10,alternative,"With relaxed position tolerance for long-read SV calls, benchmark"
truvari,truvari_03,truvari_03_01,original,collapse redundant SV calls within a single caller VCF
truvari,truvari_03,truvari_03_02,beginner,How do I collapse redundant SV calls within a single caller VCF?
truvari,truvari_03,truvari_03_03,student,I need to collapse redundant SV calls within a single caller VCF
truvari,truvari_03,truvari_03_04,polite,Please collapse redundant SV calls within a single caller VCF
truvari,truvari_03,truvari_03_05,sysadmin,Use truvari to collapse redundant SV calls within a single caller VCF
truvari,truvari_03,truvari_03_06,goal_oriented,I want to collapse redundant SV calls within a single caller VCF
truvari,truvari_03,truvari_03_07,expert,collapse redundant SV calls within single caller VCF
truvari,truvari_03,truvari_03_08,detailed,"I have data that I need to process: collapse redundant SV calls within a single caller VCF, saving the result to a specified output file"
truvari,truvari_03,truvari_03_09,informal,"Hey, can you help me collapse redundant SV calls within a single caller VCF?"
truvari,truvari_03,truvari_03_10,alternative,Perform: collapse redundant SV calls within a single caller VCF
truvari,truvari_04,truvari_04_01,original,merge SV calls from multiple callers into a consensus VCF
truvari,truvari_04,truvari_04_02,beginner,How do I merge SV calls from multiple callers into a consensus VCF?
truvari,truvari_04,truvari_04_03,student,I need to merge SV calls from multiple callers into a consensus VCF
truvari,truvari_04,truvari_04_04,polite,Please merge SV calls from multiple callers into a consensus VCF
truvari,truvari_04,truvari_04_05,sysadmin,Use truvari to merge SV calls from multiple callers into a consensus VCF
truvari,truvari_04,truvari_04_06,goal_oriented,I want to merge SV calls from multiple callers into a consensus VCF
truvari,truvari_04,truvari_04_07,expert,merge SV calls multiple callers consensus VCF
truvari,truvari_04,truvari_04_08,detailed,"I have data that I need to process: merge SV calls from multiple callers into a consensus VCF, saving the result to a specified output file"
truvari,truvari_04,truvari_04_09,informal,"Hey, can you help me merge SV calls from multiple callers into a consensus VCF?"
truvari,truvari_04,truvari_04_10,alternative,Perform: merge SV calls from multiple callers into a consensus VCF
truvari,truvari_05,truvari_05_01,original,run truvari refine to improve benchmarking accuracy with sequence realignment
truvari,truvari_05,truvari_05_02,beginner,How do I run truvari refine to improve benchmarking accuracy with sequence realignment?
truvari,truvari_05,truvari_05_03,student,I need to run truvari refine to improve benchmarking accuracy with sequence realignment
truvari,truvari_05,truvari_05_04,polite,Please run truvari refine to improve benchmarking accuracy with sequence realignment
truvari,truvari_05,truvari_05_05,sysadmin,Use truvari to run truvari refine to improve benchmarking accuracy with sequence realignment
truvari,truvari_05,truvari_05_06,goal_oriented,I want to run truvari refine to improve benchmarking accuracy with sequence realignment
truvari,truvari_05,truvari_05_07,expert,run truvari refine improve benchmarking accuracy sequence realignment
truvari,truvari_05,truvari_05_08,detailed,I have data that I need to process: run truvari refine to improve benchmarking accuracy with sequence realignment
truvari,truvari_05,truvari_05_09,informal,"Hey, can you help me run truvari refine to improve benchmarking accuracy with sequence realignment?"
truvari,truvari_05,truvari_05_10,alternative,"With sequence realignment, run truvari refine to improve benchmarking accuracy"
truvari,truvari_06,truvari_06_01,original,filter SV VCF to a specific size range before benchmarking
truvari,truvari_06,truvari_06_02,beginner,How do I filter SV VCF to a specific size range before benchmarking?
truvari,truvari_06,truvari_06_03,student,I need to filter SV VCF to a specific size range before benchmarking
truvari,truvari_06,truvari_06_04,polite,Please filter SV VCF to a specific size range before benchmarking
truvari,truvari_06,truvari_06_05,sysadmin,Use truvari to filter SV VCF to a specific size range before benchmarking
truvari,truvari_06,truvari_06_06,goal_oriented,I want to filter SV VCF to a specific size range before benchmarking
truvari,truvari_06,truvari_06_07,expert,filter SV VCF specific size range before benchmarking
truvari,truvari_06,truvari_06_08,detailed,"I have data that I need to process: filter SV VCF to a specific size range before benchmarking, saving the result to a specified output file"
truvari,truvari_06,truvari_06_09,informal,"Hey, can you help me filter SV VCF to a specific size range before benchmarking?"
truvari,truvari_06,truvari_06_10,alternative,Output a specific size range before benchmarking by performing: filter SV VCF
truvari,truvari_07,truvari_07_01,original,benchmark a structural variant caller VCF against a truth set using multiple threads
truvari,truvari_07,truvari_07_02,beginner,How do I benchmark a structural variant caller VCF against a truth set using multiple threads?
truvari,truvari_07,truvari_07_03,student,I need to benchmark a structural variant caller VCF against a truth set using multiple threads
truvari,truvari_07,truvari_07_04,polite,Please benchmark a structural variant caller VCF against a truth set using multiple threads
truvari,truvari_07,truvari_07_05,sysadmin,Use truvari to benchmark a structural variant caller VCF against a truth set using multiple threads
truvari,truvari_07,truvari_07_06,goal_oriented,I want to benchmark a structural variant caller VCF against a truth set using multiple threads
truvari,truvari_07,truvari_07_07,expert,benchmark structural variant caller VCF against truth set multiple threads
truvari,truvari_07,truvari_07_08,detailed,"I have data that I need to process: benchmark a structural variant caller VCF against a truth set using multiple threads, utilizing multiple CPU threads for speed, saving the result to a specified output file"
truvari,truvari_07,truvari_07_09,informal,"Hey, can you help me benchmark a structural variant caller VCF against a truth set using multiple threads?"
truvari,truvari_07,truvari_07_10,alternative,Perform: benchmark a structural variant caller VCF against a truth set using multiple threads
truvari,truvari_08,truvari_08_01,original,benchmark with relaxed position tolerance for long-read SV calls and write output to a file
truvari,truvari_08,truvari_08_02,beginner,How do I benchmark with relaxed position tolerance for long-read SV calls and write output to a file?
truvari,truvari_08,truvari_08_03,student,I need to benchmark with relaxed position tolerance for long-read SV calls and write output to a file
truvari,truvari_08,truvari_08_04,polite,Please benchmark with relaxed position tolerance for long-read SV calls and write output to a file
truvari,truvari_08,truvari_08_05,sysadmin,Use truvari to benchmark with relaxed position tolerance for long-read SV calls and write output to a file
truvari,truvari_08,truvari_08_06,goal_oriented,I want to benchmark with relaxed position tolerance for long-read SV calls and write output to a file
truvari,truvari_08,truvari_08_07,expert,benchmark relaxed position tolerance long-read SV calls write output file
truvari,truvari_08,truvari_08_08,detailed,"I have data that I need to process: benchmark with relaxed position tolerance for long-read SV calls and write output to a file, saving the result to a specified output file"
truvari,truvari_08,truvari_08_09,informal,"Hey, can you help me benchmark with relaxed position tolerance for long-read SV calls and write output to a file?"
truvari,truvari_08,truvari_08_10,alternative,Write output to a file after benchmark with relaxed position tolerance for long-read SV calls
truvari,truvari_09,truvari_09_01,original,collapse redundant SV calls within a single caller VCF in quiet mode
truvari,truvari_09,truvari_09_02,beginner,How do I collapse redundant SV calls within a single caller VCF in quiet mode?
truvari,truvari_09,truvari_09_03,student,I need to collapse redundant SV calls within a single caller VCF in quiet mode
truvari,truvari_09,truvari_09_04,polite,Please collapse redundant SV calls within a single caller VCF in quiet mode
truvari,truvari_09,truvari_09_05,sysadmin,Use truvari to collapse redundant SV calls within a single caller VCF in quiet mode
truvari,truvari_09,truvari_09_06,goal_oriented,I want to collapse redundant SV calls within a single caller VCF in quiet mode
truvari,truvari_09,truvari_09_07,expert,collapse redundant SV calls within single caller VCF quiet mode
truvari,truvari_09,truvari_09_08,detailed,"I have data that I need to process: collapse redundant SV calls within a single caller VCF in quiet mode, saving the result to a specified output file"
truvari,truvari_09,truvari_09_09,informal,"Hey, can you help me collapse redundant SV calls within a single caller VCF in quiet mode?"
truvari,truvari_09,truvari_09_10,alternative,Perform: collapse redundant SV calls within a single caller VCF in quiet mode
truvari,truvari_10,truvari_10_01,original,merge SV calls from multiple callers into a consensus VCF with default parameters
truvari,truvari_10,truvari_10_02,beginner,How do I merge SV calls from multiple callers into a consensus VCF with default parameters?
truvari,truvari_10,truvari_10_03,student,I need to merge SV calls from multiple callers into a consensus VCF with default parameters
truvari,truvari_10,truvari_10_04,polite,Please merge SV calls from multiple callers into a consensus VCF with default parameters
truvari,truvari_10,truvari_10_05,sysadmin,Use truvari to merge SV calls from multiple callers into a consensus VCF with default parameters
truvari,truvari_10,truvari_10_06,goal_oriented,I want to merge SV calls from multiple callers into a consensus VCF with default parameters
truvari,truvari_10,truvari_10_07,expert,merge SV calls multiple callers consensus VCF default parameters
truvari,truvari_10,truvari_10_08,detailed,"I have data that I need to process: merge SV calls from multiple callers into a consensus VCF with default parameters, saving the result to a specified output file"
truvari,truvari_10,truvari_10_09,informal,"Hey, can you help me merge SV calls from multiple callers into a consensus VCF with default parameters?"
truvari,truvari_10,truvari_10_10,alternative,"With default parameters, merge SV calls from multiple callers into a consensus VCF"
varscan2,varscan2_01,varscan2_01_01,original,call germline SNPs from a tumor or normal sample
varscan2,varscan2_01,varscan2_01_02,beginner,How do I call germline SNPs from a tumor or normal sample?
varscan2,varscan2_01,varscan2_01_03,student,I need to call germline SNPs from a tumor or normal sample
varscan2,varscan2_01,varscan2_01_04,polite,Please call germline SNPs from a tumor or normal sample
varscan2,varscan2_01,varscan2_01_05,sysadmin,Use varscan2 to call germline SNPs from a tumor or normal sample
varscan2,varscan2_01,varscan2_01_06,goal_oriented,I want to call germline SNPs from a tumor or normal sample
varscan2,varscan2_01,varscan2_01_07,expert,call germline SNPs tumor or normal sample
varscan2,varscan2_01,varscan2_01_08,detailed,"I have data that I need to process: call germline SNPs from a tumor or normal sample, saving the result to a specified output file"
varscan2,varscan2_01,varscan2_01_09,informal,"Hey, can you help me call germline SNPs from a tumor or normal sample?"
varscan2,varscan2_01,varscan2_01_10,alternative,Perform: call germline SNPs from a tumor or normal sample
varscan2,varscan2_02,varscan2_02_01,original,call somatic variants from tumor-normal pair
varscan2,varscan2_02,varscan2_02_02,beginner,How do I call somatic variants from tumor-normal pair?
varscan2,varscan2_02,varscan2_02_03,student,I need to call somatic variants from tumor-normal pair
varscan2,varscan2_02,varscan2_02_04,polite,Please call somatic variants from tumor-normal pair
varscan2,varscan2_02,varscan2_02_05,sysadmin,Use varscan2 to call somatic variants from tumor-normal pair
varscan2,varscan2_02,varscan2_02_06,goal_oriented,I want to call somatic variants from tumor-normal pair
varscan2,varscan2_02,varscan2_02_07,expert,call somatic variants tumor-normal pair
varscan2,varscan2_02,varscan2_02_08,detailed,"I have data that I need to process: call somatic variants from tumor-normal pair, saving the result to a specified output file"
varscan2,varscan2_02,varscan2_02_09,informal,"Hey, can you help me call somatic variants from tumor-normal pair?"
varscan2,varscan2_02,varscan2_02_10,alternative,Perform: call somatic variants from tumor-normal pair
varscan2,varscan2_03,varscan2_03_01,original,filter somatic variants for high-confidence calls
varscan2,varscan2_03,varscan2_03_02,beginner,How do I filter somatic variants for high-confidence calls?
varscan2,varscan2_03,varscan2_03_03,student,I need to filter somatic variants for high-confidence calls
varscan2,varscan2_03,varscan2_03_04,polite,Please filter somatic variants for high-confidence calls
varscan2,varscan2_03,varscan2_03_05,sysadmin,Use varscan2 to filter somatic variants for high-confidence calls
varscan2,varscan2_03,varscan2_03_06,goal_oriented,I want to filter somatic variants for high-confidence calls
varscan2,varscan2_03,varscan2_03_07,expert,filter somatic variants high-confidence calls
varscan2,varscan2_03,varscan2_03_08,detailed,I have data that I need to process: filter somatic variants for high-confidence calls
varscan2,varscan2_03,varscan2_03_09,informal,"Hey, can you help me filter somatic variants for high-confidence calls?"
varscan2,varscan2_03,varscan2_03_10,alternative,Perform: filter somatic variants for high-confidence calls
varscan2,varscan2_04,varscan2_04_01,original,call germline SNPs from a tumor or normal sample
varscan2,varscan2_04,varscan2_04_02,beginner,How do I call germline SNPs from a tumor or normal sample?
varscan2,varscan2_04,varscan2_04_03,student,I need to call germline SNPs from a tumor or normal sample
varscan2,varscan2_04,varscan2_04_04,polite,Please call germline SNPs from a tumor or normal sample
varscan2,varscan2_04,varscan2_04_05,sysadmin,Use varscan2 to call germline SNPs from a tumor or normal sample
varscan2,varscan2_04,varscan2_04_06,goal_oriented,I want to call germline SNPs from a tumor or normal sample
varscan2,varscan2_04,varscan2_04_07,expert,call germline SNPs tumor or normal sample
varscan2,varscan2_04,varscan2_04_08,detailed,"I have data that I need to process: call germline SNPs from a tumor or normal sample, saving the result to a specified output file"
varscan2,varscan2_04,varscan2_04_09,informal,"Hey, can you help me call germline SNPs from a tumor or normal sample?"
varscan2,varscan2_04,varscan2_04_10,alternative,Perform: call germline SNPs from a tumor or normal sample
varscan2,varscan2_05,varscan2_05_01,original,call somatic variants from tumor-normal pair with default parameters
varscan2,varscan2_05,varscan2_05_02,beginner,How do I call somatic variants from tumor-normal pair with default parameters?
varscan2,varscan2_05,varscan2_05_03,student,I need to call somatic variants from tumor-normal pair with default parameters
varscan2,varscan2_05,varscan2_05_04,polite,Please call somatic variants from tumor-normal pair with default parameters
varscan2,varscan2_05,varscan2_05_05,sysadmin,Use varscan2 to call somatic variants from tumor-normal pair with default parameters
varscan2,varscan2_05,varscan2_05_06,goal_oriented,I want to call somatic variants from tumor-normal pair with default parameters
varscan2,varscan2_05,varscan2_05_07,expert,call somatic variants tumor-normal pair default parameters
varscan2,varscan2_05,varscan2_05_08,detailed,"I have data that I need to process: call somatic variants from tumor-normal pair with default parameters, saving the result to a specified output file"
varscan2,varscan2_05,varscan2_05_09,informal,"Hey, can you help me call somatic variants from tumor-normal pair with default parameters?"
varscan2,varscan2_05,varscan2_05_10,alternative,"With default parameters, call somatic variants from tumor-normal pair"
varscan2,varscan2_06,varscan2_06_01,original,filter somatic variants for high-confidence calls with verbose output
varscan2,varscan2_06,varscan2_06_02,beginner,How do I filter somatic variants for high-confidence calls with verbose output?
varscan2,varscan2_06,varscan2_06_03,student,I need to filter somatic variants for high-confidence calls with verbose output
varscan2,varscan2_06,varscan2_06_04,polite,Please filter somatic variants for high-confidence calls with verbose output
varscan2,varscan2_06,varscan2_06_05,sysadmin,Use varscan2 to filter somatic variants for high-confidence calls with verbose output
varscan2,varscan2_06,varscan2_06_06,goal_oriented,I want to filter somatic variants for high-confidence calls with verbose output
varscan2,varscan2_06,varscan2_06_07,expert,filter somatic variants high-confidence calls verbose output
varscan2,varscan2_06,varscan2_06_08,detailed,I have data that I need to process: filter somatic variants for high-confidence calls with verbose output
varscan2,varscan2_06,varscan2_06_09,informal,"Hey, can you help me filter somatic variants for high-confidence calls with verbose output?"
varscan2,varscan2_06,varscan2_06_10,alternative,"With verbose output, filter somatic variants for high-confidence calls"
varscan2,varscan2_07,varscan2_07_01,original,call germline SNPs from a tumor or normal sample
varscan2,varscan2_07,varscan2_07_02,beginner,How do I call germline SNPs from a tumor or normal sample?
varscan2,varscan2_07,varscan2_07_03,student,I need to call germline SNPs from a tumor or normal sample
varscan2,varscan2_07,varscan2_07_04,polite,Please call germline SNPs from a tumor or normal sample
varscan2,varscan2_07,varscan2_07_05,sysadmin,Use varscan2 to call germline SNPs from a tumor or normal sample
varscan2,varscan2_07,varscan2_07_06,goal_oriented,I want to call germline SNPs from a tumor or normal sample
varscan2,varscan2_07,varscan2_07_07,expert,call germline SNPs tumor or normal sample
varscan2,varscan2_07,varscan2_07_08,detailed,"I have data that I need to process: call germline SNPs from a tumor or normal sample, saving the result to a specified output file"
varscan2,varscan2_07,varscan2_07_09,informal,"Hey, can you help me call germline SNPs from a tumor or normal sample?"
varscan2,varscan2_07,varscan2_07_10,alternative,Perform: call germline SNPs from a tumor or normal sample
varscan2,varscan2_08,varscan2_08_01,original,call somatic variants from tumor-normal pair and write output to a file
varscan2,varscan2_08,varscan2_08_02,beginner,How do I call somatic variants from tumor-normal pair and write output to a file?
varscan2,varscan2_08,varscan2_08_03,student,I need to call somatic variants from tumor-normal pair and write output to a file
varscan2,varscan2_08,varscan2_08_04,polite,Please call somatic variants from tumor-normal pair and write output to a file
varscan2,varscan2_08,varscan2_08_05,sysadmin,Use varscan2 to call somatic variants from tumor-normal pair and write output to a file
varscan2,varscan2_08,varscan2_08_06,goal_oriented,I want to call somatic variants from tumor-normal pair and write output to a file
varscan2,varscan2_08,varscan2_08_07,expert,call somatic variants tumor-normal pair write output file
varscan2,varscan2_08,varscan2_08_08,detailed,"I have data that I need to process: call somatic variants from tumor-normal pair and write output to a file, saving the result to a specified output file"
varscan2,varscan2_08,varscan2_08_09,informal,"Hey, can you help me call somatic variants from tumor-normal pair and write output to a file?"
varscan2,varscan2_08,varscan2_08_10,alternative,Write output to a file after call somatic variants from tumor-normal pair
varscan2,varscan2_09,varscan2_09_01,original,filter somatic variants for high-confidence calls in quiet mode
varscan2,varscan2_09,varscan2_09_02,beginner,How do I filter somatic variants for high-confidence calls in quiet mode?
varscan2,varscan2_09,varscan2_09_03,student,I need to filter somatic variants for high-confidence calls in quiet mode
varscan2,varscan2_09,varscan2_09_04,polite,Please filter somatic variants for high-confidence calls in quiet mode
varscan2,varscan2_09,varscan2_09_05,sysadmin,Use varscan2 to filter somatic variants for high-confidence calls in quiet mode
varscan2,varscan2_09,varscan2_09_06,goal_oriented,I want to filter somatic variants for high-confidence calls in quiet mode
varscan2,varscan2_09,varscan2_09_07,expert,filter somatic variants high-confidence calls quiet mode
varscan2,varscan2_09,varscan2_09_08,detailed,I have data that I need to process: filter somatic variants for high-confidence calls in quiet mode
varscan2,varscan2_09,varscan2_09_09,informal,"Hey, can you help me filter somatic variants for high-confidence calls in quiet mode?"
varscan2,varscan2_09,varscan2_09_10,alternative,Perform: filter somatic variants for high-confidence calls in quiet mode
varscan2,varscan2_10,varscan2_10_01,original,call germline SNPs from a tumor or normal sample with default parameters
varscan2,varscan2_10,varscan2_10_02,beginner,How do I call germline SNPs from a tumor or normal sample with default parameters?
varscan2,varscan2_10,varscan2_10_03,student,I need to call germline SNPs from a tumor or normal sample with default parameters
varscan2,varscan2_10,varscan2_10_04,polite,Please call germline SNPs from a tumor or normal sample with default parameters
varscan2,varscan2_10,varscan2_10_05,sysadmin,Use varscan2 to call germline SNPs from a tumor or normal sample with default parameters
varscan2,varscan2_10,varscan2_10_06,goal_oriented,I want to call germline SNPs from a tumor or normal sample with default parameters
varscan2,varscan2_10,varscan2_10_07,expert,call germline SNPs tumor or normal sample default parameters
varscan2,varscan2_10,varscan2_10_08,detailed,"I have data that I need to process: call germline SNPs from a tumor or normal sample with default parameters, saving the result to a specified output file"
varscan2,varscan2_10,varscan2_10_09,informal,"Hey, can you help me call germline SNPs from a tumor or normal sample with default parameters?"
varscan2,varscan2_10,varscan2_10_10,alternative,"With default parameters, call germline SNPs from a tumor or normal sample"
vcfanno,vcfanno_01,vcfanno_01_01,original,annotate a VCF with gnomAD allele frequencies
vcfanno,vcfanno_01,vcfanno_01_02,beginner,How do I annotate a VCF with gnomAD allele frequencies?
vcfanno,vcfanno_01,vcfanno_01_03,student,I need to annotate a VCF with gnomAD allele frequencies
vcfanno,vcfanno_01,vcfanno_01_04,polite,Please annotate a VCF with gnomAD allele frequencies
vcfanno,vcfanno_01,vcfanno_01_05,sysadmin,Use vcfanno to annotate a VCF with gnomAD allele frequencies
vcfanno,vcfanno_01,vcfanno_01_06,goal_oriented,I want to annotate a VCF with gnomAD allele frequencies
vcfanno,vcfanno_01,vcfanno_01_07,expert,annotate VCF gnomAD allele frequencies
vcfanno,vcfanno_01,vcfanno_01_08,detailed,"I have data that I need to process: annotate a VCF with gnomAD allele frequencies, utilizing multiple CPU threads for speed"
vcfanno,vcfanno_01,vcfanno_01_09,informal,"Hey, can you help me annotate a VCF with gnomAD allele frequencies?"
vcfanno,vcfanno_01,vcfanno_01_10,alternative,"With gnomAD allele frequencies, annotate a VCF"
vcfanno,vcfanno_02,vcfanno_02_01,original,annotate variants with ClinVar pathogenicity and a custom BED file
vcfanno,vcfanno_02,vcfanno_02_02,beginner,How do I annotate variants with ClinVar pathogenicity and a custom BED file?
vcfanno,vcfanno_02,vcfanno_02_03,student,I need to annotate variants with ClinVar pathogenicity and a custom BED file
vcfanno,vcfanno_02,vcfanno_02_04,polite,Please annotate variants with ClinVar pathogenicity and a custom BED file
vcfanno,vcfanno_02,vcfanno_02_05,sysadmin,Use vcfanno to annotate variants with ClinVar pathogenicity and a custom BED file
vcfanno,vcfanno_02,vcfanno_02_06,goal_oriented,I want to annotate variants with ClinVar pathogenicity and a custom BED file
vcfanno,vcfanno_02,vcfanno_02_07,expert,annotate variants ClinVar pathogenicity custom BED file
vcfanno,vcfanno_02,vcfanno_02_08,detailed,"I have data that I need to process: annotate variants with ClinVar pathogenicity and a custom BED file, utilizing multiple CPU threads for speed"
vcfanno,vcfanno_02,vcfanno_02_09,informal,"Hey, can you help me annotate variants with ClinVar pathogenicity and a custom BED file?"
vcfanno,vcfanno_02,vcfanno_02_10,alternative,A custom BED file after annotate variants with ClinVar pathogenicity
vcfanno,vcfanno_03,vcfanno_03_01,original,add a flag for variants overlapping a BED region of interest
vcfanno,vcfanno_03,vcfanno_03_02,beginner,How do I add a flag for variants overlapping a BED region of interest?
vcfanno,vcfanno_03,vcfanno_03_03,student,I need to add a flag for variants overlapping a BED region of interest
vcfanno,vcfanno_03,vcfanno_03_04,polite,Please add a flag for variants overlapping a BED region of interest
vcfanno,vcfanno_03,vcfanno_03_05,sysadmin,Use vcfanno to add a flag for variants overlapping a BED region of interest
vcfanno,vcfanno_03,vcfanno_03_06,goal_oriented,I want to add a flag for variants overlapping a BED region of interest
vcfanno,vcfanno_03,vcfanno_03_07,expert,add flag variants overlapping BED region of interest
vcfanno,vcfanno_03,vcfanno_03_08,detailed,"I have data that I need to process: add a flag for variants overlapping a BED region of interest, utilizing multiple CPU threads for speed"
vcfanno,vcfanno_03,vcfanno_03_09,informal,"Hey, can you help me add a flag for variants overlapping a BED region of interest?"
vcfanno,vcfanno_03,vcfanno_03_10,alternative,Perform: add a flag for variants overlapping a BED region of interest
vcfanno,vcfanno_04,vcfanno_04_01,original,compute mean coverage at each variant position from a BAM file
vcfanno,vcfanno_04,vcfanno_04_02,beginner,How do I compute mean coverage at each variant position from a BAM file?
vcfanno,vcfanno_04,vcfanno_04_03,student,I need to compute mean coverage at each variant position from a BAM file
vcfanno,vcfanno_04,vcfanno_04_04,polite,Please compute mean coverage at each variant position from a BAM file
vcfanno,vcfanno_04,vcfanno_04_05,sysadmin,Use vcfanno to compute mean coverage at each variant position from a BAM file
vcfanno,vcfanno_04,vcfanno_04_06,goal_oriented,I want to compute mean coverage at each variant position from a BAM file
vcfanno,vcfanno_04,vcfanno_04_07,expert,compute mean coverage at each variant position BAM file
vcfanno,vcfanno_04,vcfanno_04_08,detailed,"I have data that I need to process: compute mean coverage at each variant position from a BAM file, utilizing multiple CPU threads for speed"
vcfanno,vcfanno_04,vcfanno_04_09,informal,"Hey, can you help me compute mean coverage at each variant position from a BAM file?"
vcfanno,vcfanno_04,vcfanno_04_10,alternative,Perform: compute mean coverage at each variant position from a BAM file
vcfanno,vcfanno_05,vcfanno_05_01,original,use a Lua postannotation to combine scores into a final filter
vcfanno,vcfanno_05,vcfanno_05_02,beginner,How do I use a Lua postannotation to combine scores into a final filter?
vcfanno,vcfanno_05,vcfanno_05_03,student,I need to use a Lua postannotation to combine scores into a final filter
vcfanno,vcfanno_05,vcfanno_05_04,polite,Please use a Lua postannotation to combine scores into a final filter
vcfanno,vcfanno_05,vcfanno_05_05,sysadmin,Use vcfanno to use a Lua postannotation to combine scores into a final filter
vcfanno,vcfanno_05,vcfanno_05_06,goal_oriented,I want to use a Lua postannotation to combine scores into a final filter
vcfanno,vcfanno_05,vcfanno_05_07,expert,use Lua postannotation combine scores final filter
vcfanno,vcfanno_05,vcfanno_05_08,detailed,"I have data that I need to process: use a Lua postannotation to combine scores into a final filter, utilizing multiple CPU threads for speed"
vcfanno,vcfanno_05,vcfanno_05_09,informal,"Hey, can you help me use a Lua postannotation to combine scores into a final filter?"
vcfanno,vcfanno_05,vcfanno_05_10,alternative,Output combine scores into a final filter by performing: use a Lua postannotation
vcfanno,vcfanno_06,vcfanno_06_01,original,annotate indels with COSMIC and output only annotated variants
vcfanno,vcfanno_06,vcfanno_06_02,beginner,How do I annotate indels with COSMIC and output only annotated variants?
vcfanno,vcfanno_06,vcfanno_06_03,student,I need to annotate indels with COSMIC and output only annotated variants
vcfanno,vcfanno_06,vcfanno_06_04,polite,Please annotate indels with COSMIC and output only annotated variants
vcfanno,vcfanno_06,vcfanno_06_05,sysadmin,Use vcfanno to annotate indels with COSMIC and output only annotated variants
vcfanno,vcfanno_06,vcfanno_06_06,goal_oriented,I want to annotate indels with COSMIC and output only annotated variants
vcfanno,vcfanno_06,vcfanno_06_07,expert,annotate indels COSMIC output only annotated variants
vcfanno,vcfanno_06,vcfanno_06_08,detailed,"I have data that I need to process: annotate indels with COSMIC and output only annotated variants, utilizing multiple CPU threads for speed"
vcfanno,vcfanno_06,vcfanno_06_09,informal,"Hey, can you help me annotate indels with COSMIC and output only annotated variants?"
vcfanno,vcfanno_06,vcfanno_06_10,alternative,Output only annotated variants after annotate indels with COSMIC
vcfanno,vcfanno_07,vcfanno_07_01,original,annotate a VCF with gnomAD allele frequencies
vcfanno,vcfanno_07,vcfanno_07_02,beginner,How do I annotate a VCF with gnomAD allele frequencies?
vcfanno,vcfanno_07,vcfanno_07_03,student,I need to annotate a VCF with gnomAD allele frequencies
vcfanno,vcfanno_07,vcfanno_07_04,polite,Please annotate a VCF with gnomAD allele frequencies
vcfanno,vcfanno_07,vcfanno_07_05,sysadmin,Use vcfanno to annotate a VCF with gnomAD allele frequencies
vcfanno,vcfanno_07,vcfanno_07_06,goal_oriented,I want to annotate a VCF with gnomAD allele frequencies
vcfanno,vcfanno_07,vcfanno_07_07,expert,annotate VCF gnomAD allele frequencies
vcfanno,vcfanno_07,vcfanno_07_08,detailed,"I have data that I need to process: annotate a VCF with gnomAD allele frequencies, utilizing multiple CPU threads for speed"
vcfanno,vcfanno_07,vcfanno_07_09,informal,"Hey, can you help me annotate a VCF with gnomAD allele frequencies?"
vcfanno,vcfanno_07,vcfanno_07_10,alternative,"With gnomAD allele frequencies, annotate a VCF"
vcfanno,vcfanno_08,vcfanno_08_01,original,annotate variants with ClinVar pathogenicity and a custom BED file
vcfanno,vcfanno_08,vcfanno_08_02,beginner,How do I annotate variants with ClinVar pathogenicity and a custom BED file?
vcfanno,vcfanno_08,vcfanno_08_03,student,I need to annotate variants with ClinVar pathogenicity and a custom BED file
vcfanno,vcfanno_08,vcfanno_08_04,polite,Please annotate variants with ClinVar pathogenicity and a custom BED file
vcfanno,vcfanno_08,vcfanno_08_05,sysadmin,Use vcfanno to annotate variants with ClinVar pathogenicity and a custom BED file
vcfanno,vcfanno_08,vcfanno_08_06,goal_oriented,I want to annotate variants with ClinVar pathogenicity and a custom BED file
vcfanno,vcfanno_08,vcfanno_08_07,expert,annotate variants ClinVar pathogenicity custom BED file
vcfanno,vcfanno_08,vcfanno_08_08,detailed,"I have data that I need to process: annotate variants with ClinVar pathogenicity and a custom BED file, utilizing multiple CPU threads for speed"
vcfanno,vcfanno_08,vcfanno_08_09,informal,"Hey, can you help me annotate variants with ClinVar pathogenicity and a custom BED file?"
vcfanno,vcfanno_08,vcfanno_08_10,alternative,A custom BED file after annotate variants with ClinVar pathogenicity
vcfanno,vcfanno_09,vcfanno_09_01,original,add a flag for variants overlapping a BED region of interest
vcfanno,vcfanno_09,vcfanno_09_02,beginner,How do I add a flag for variants overlapping a BED region of interest?
vcfanno,vcfanno_09,vcfanno_09_03,student,I need to add a flag for variants overlapping a BED region of interest
vcfanno,vcfanno_09,vcfanno_09_04,polite,Please add a flag for variants overlapping a BED region of interest
vcfanno,vcfanno_09,vcfanno_09_05,sysadmin,Use vcfanno to add a flag for variants overlapping a BED region of interest
vcfanno,vcfanno_09,vcfanno_09_06,goal_oriented,I want to add a flag for variants overlapping a BED region of interest
vcfanno,vcfanno_09,vcfanno_09_07,expert,add flag variants overlapping BED region of interest
vcfanno,vcfanno_09,vcfanno_09_08,detailed,"I have data that I need to process: add a flag for variants overlapping a BED region of interest, utilizing multiple CPU threads for speed"
vcfanno,vcfanno_09,vcfanno_09_09,informal,"Hey, can you help me add a flag for variants overlapping a BED region of interest?"
vcfanno,vcfanno_09,vcfanno_09_10,alternative,Perform: add a flag for variants overlapping a BED region of interest
vcfanno,vcfanno_10,vcfanno_10_01,original,compute mean coverage at each variant position from a BAM file with default parameters
vcfanno,vcfanno_10,vcfanno_10_02,beginner,How do I compute mean coverage at each variant position from a BAM file with default parameters?
vcfanno,vcfanno_10,vcfanno_10_03,student,I need to compute mean coverage at each variant position from a BAM file with default parameters
vcfanno,vcfanno_10,vcfanno_10_04,polite,Please compute mean coverage at each variant position from a BAM file with default parameters
vcfanno,vcfanno_10,vcfanno_10_05,sysadmin,Use vcfanno to compute mean coverage at each variant position from a BAM file with default parameters
vcfanno,vcfanno_10,vcfanno_10_06,goal_oriented,I want to compute mean coverage at each variant position from a BAM file with default parameters
vcfanno,vcfanno_10,vcfanno_10_07,expert,compute mean coverage at each variant position BAM file default parameters
vcfanno,vcfanno_10,vcfanno_10_08,detailed,"I have data that I need to process: compute mean coverage at each variant position from a BAM file with default parameters, utilizing multiple CPU threads for speed"
vcfanno,vcfanno_10,vcfanno_10_09,informal,"Hey, can you help me compute mean coverage at each variant position from a BAM file with default parameters?"
vcfanno,vcfanno_10,vcfanno_10_10,alternative,"With default parameters, compute mean coverage at each variant position from a BAM file"
vcftools,vcftools_01,vcftools_01_01,original,filter VCF by minor allele frequency and missingness
vcftools,vcftools_01,vcftools_01_02,beginner,How do I filter VCF by minor allele frequency and missingness?
vcftools,vcftools_01,vcftools_01_03,student,I need to filter VCF by minor allele frequency and missingness
vcftools,vcftools_01,vcftools_01_04,polite,Please filter VCF by minor allele frequency and missingness
vcftools,vcftools_01,vcftools_01_05,sysadmin,Use vcftools to filter VCF by minor allele frequency and missingness
vcftools,vcftools_01,vcftools_01_06,goal_oriented,I want to filter VCF by minor allele frequency and missingness
vcftools,vcftools_01,vcftools_01_07,expert,filter VCF by minor allele frequency missingness
vcftools,vcftools_01,vcftools_01_08,detailed,I have data that I need to process: filter VCF by minor allele frequency and missingness
vcftools,vcftools_01,vcftools_01_09,informal,"Hey, can you help me filter VCF by minor allele frequency and missingness?"
vcftools,vcftools_01,vcftools_01_10,alternative,Missingness after filter VCF by minor allele frequency
vcftools,vcftools_02,vcftools_02_01,original,calculate per-site nucleotide diversity and Tajima's D statistics
vcftools,vcftools_02,vcftools_02_02,beginner,How do I calculate per-site nucleotide diversity and Tajima's D statistics?
vcftools,vcftools_02,vcftools_02_03,student,I need to calculate per-site nucleotide diversity and Tajima's D statistics
vcftools,vcftools_02,vcftools_02_04,polite,Please calculate per-site nucleotide diversity and Tajima's D statistics
vcftools,vcftools_02,vcftools_02_05,sysadmin,Use vcftools to calculate per-site nucleotide diversity and Tajima's D statistics
vcftools,vcftools_02,vcftools_02_06,goal_oriented,I want to calculate per-site nucleotide diversity and Tajima's D statistics
vcftools,vcftools_02,vcftools_02_07,expert,calculate per-site nucleotide diversity Tajima's D statistics
vcftools,vcftools_02,vcftools_02_08,detailed,I have data that I need to process: calculate per-site nucleotide diversity and Tajima's D statistics
vcftools,vcftools_02,vcftools_02_09,informal,"Hey, can you help me calculate per-site nucleotide diversity and Tajima's D statistics?"
vcftools,vcftools_02,vcftools_02_10,alternative,Tajima's D statistics after calculate per-site nucleotide diversity
vcftools,vcftools_03,vcftools_03_01,original,filter VCF to biallelic SNPs with minimum depth
vcftools,vcftools_03,vcftools_03_02,beginner,How do I filter VCF to biallelic SNPs with minimum depth?
vcftools,vcftools_03,vcftools_03_03,student,I need to filter VCF to biallelic SNPs with minimum depth
vcftools,vcftools_03,vcftools_03_04,polite,Please filter VCF to biallelic SNPs with minimum depth
vcftools,vcftools_03,vcftools_03_05,sysadmin,Use vcftools to filter VCF to biallelic SNPs with minimum depth
vcftools,vcftools_03,vcftools_03_06,goal_oriented,I want to filter VCF to biallelic SNPs with minimum depth
vcftools,vcftools_03,vcftools_03_07,expert,filter VCF biallelic SNPs minimum depth
vcftools,vcftools_03,vcftools_03_08,detailed,I have data that I need to process: filter VCF to biallelic SNPs with minimum depth
vcftools,vcftools_03,vcftools_03_09,informal,"Hey, can you help me filter VCF to biallelic SNPs with minimum depth?"
vcftools,vcftools_03,vcftools_03_10,alternative,"With minimum depth, filter VCF to biallelic SNPs"
vcftools,vcftools_04,vcftools_04_01,original,compute pairwise FST between two populations
vcftools,vcftools_04,vcftools_04_02,beginner,How do I compute pairwise FST between two populations?
vcftools,vcftools_04,vcftools_04_03,student,I need to compute pairwise FST between two populations
vcftools,vcftools_04,vcftools_04_04,polite,Please compute pairwise FST between two populations
vcftools,vcftools_04,vcftools_04_05,sysadmin,Use vcftools to compute pairwise FST between two populations
vcftools,vcftools_04,vcftools_04_06,goal_oriented,I want to compute pairwise FST between two populations
vcftools,vcftools_04,vcftools_04_07,expert,compute pairwise FST between two populations
vcftools,vcftools_04,vcftools_04_08,detailed,I have data that I need to process: compute pairwise FST between two populations
vcftools,vcftools_04,vcftools_04_09,informal,"Hey, can you help me compute pairwise FST between two populations?"
vcftools,vcftools_04,vcftools_04_10,alternative,Perform: compute pairwise FST between two populations
vcftools,vcftools_05,vcftools_05_01,original,convert VCF to PLINK format for downstream analysis
vcftools,vcftools_05,vcftools_05_02,beginner,How do I convert VCF to PLINK format for downstream analysis?
vcftools,vcftools_05,vcftools_05_03,student,I need to convert VCF to PLINK format for downstream analysis
vcftools,vcftools_05,vcftools_05_04,polite,Please convert VCF to PLINK format for downstream analysis
vcftools,vcftools_05,vcftools_05_05,sysadmin,Use vcftools to convert VCF to PLINK format for downstream analysis
vcftools,vcftools_05,vcftools_05_06,goal_oriented,I want to convert VCF to PLINK format for downstream analysis
vcftools,vcftools_05,vcftools_05_07,expert,convert VCF PLINK format downstream analysis
vcftools,vcftools_05,vcftools_05_08,detailed,I have data that I need to process: convert VCF to PLINK format for downstream analysis
vcftools,vcftools_05,vcftools_05_09,informal,"Hey, can you help me convert VCF to PLINK format for downstream analysis?"
vcftools,vcftools_05,vcftools_05_10,alternative,Output PLINK format for downstream analysis by performing: convert VCF
vcftools,vcftools_06,vcftools_06_01,original,filter VCF by minor allele frequency and missingness with verbose output
vcftools,vcftools_06,vcftools_06_02,beginner,How do I filter VCF by minor allele frequency and missingness with verbose output?
vcftools,vcftools_06,vcftools_06_03,student,I need to filter VCF by minor allele frequency and missingness with verbose output
vcftools,vcftools_06,vcftools_06_04,polite,Please filter VCF by minor allele frequency and missingness with verbose output
vcftools,vcftools_06,vcftools_06_05,sysadmin,Use vcftools to filter VCF by minor allele frequency and missingness with verbose output
vcftools,vcftools_06,vcftools_06_06,goal_oriented,I want to filter VCF by minor allele frequency and missingness with verbose output
vcftools,vcftools_06,vcftools_06_07,expert,filter VCF by minor allele frequency missingness verbose output
vcftools,vcftools_06,vcftools_06_08,detailed,I have data that I need to process: filter VCF by minor allele frequency and missingness with verbose output
vcftools,vcftools_06,vcftools_06_09,informal,"Hey, can you help me filter VCF by minor allele frequency and missingness with verbose output?"
vcftools,vcftools_06,vcftools_06_10,alternative,Missingness with verbose output after filter VCF by minor allele frequency
vcftools,vcftools_07,vcftools_07_01,original,calculate per-site nucleotide diversity and Tajima's D statistics using multiple threads
vcftools,vcftools_07,vcftools_07_02,beginner,How do I calculate per-site nucleotide diversity and Tajima's D statistics using multiple threads?
vcftools,vcftools_07,vcftools_07_03,student,I need to calculate per-site nucleotide diversity and Tajima's D statistics using multiple threads
vcftools,vcftools_07,vcftools_07_04,polite,Please calculate per-site nucleotide diversity and Tajima's D statistics using multiple threads
vcftools,vcftools_07,vcftools_07_05,sysadmin,Use vcftools to calculate per-site nucleotide diversity and Tajima's D statistics using multiple threads
vcftools,vcftools_07,vcftools_07_06,goal_oriented,I want to calculate per-site nucleotide diversity and Tajima's D statistics using multiple threads
vcftools,vcftools_07,vcftools_07_07,expert,calculate per-site nucleotide diversity Tajima's D statistics multiple threads
vcftools,vcftools_07,vcftools_07_08,detailed,"I have data that I need to process: calculate per-site nucleotide diversity and Tajima's D statistics using multiple threads, utilizing multiple CPU threads for speed"
vcftools,vcftools_07,vcftools_07_09,informal,"Hey, can you help me calculate per-site nucleotide diversity and Tajima's D statistics using multiple threads?"
vcftools,vcftools_07,vcftools_07_10,alternative,Tajima's D statistics using multiple threads after calculate per-site nucleotide diversity
vcftools,vcftools_08,vcftools_08_01,original,filter VCF to biallelic SNPs with minimum depth and write output to a file
vcftools,vcftools_08,vcftools_08_02,beginner,How do I filter VCF to biallelic SNPs with minimum depth and write output to a file?
vcftools,vcftools_08,vcftools_08_03,student,I need to filter VCF to biallelic SNPs with minimum depth and write output to a file
vcftools,vcftools_08,vcftools_08_04,polite,Please filter VCF to biallelic SNPs with minimum depth and write output to a file
vcftools,vcftools_08,vcftools_08_05,sysadmin,Use vcftools to filter VCF to biallelic SNPs with minimum depth and write output to a file
vcftools,vcftools_08,vcftools_08_06,goal_oriented,I want to filter VCF to biallelic SNPs with minimum depth and write output to a file
vcftools,vcftools_08,vcftools_08_07,expert,filter VCF biallelic SNPs minimum depth write output file
vcftools,vcftools_08,vcftools_08_08,detailed,"I have data that I need to process: filter VCF to biallelic SNPs with minimum depth and write output to a file, saving the result to a specified output file"
vcftools,vcftools_08,vcftools_08_09,informal,"Hey, can you help me filter VCF to biallelic SNPs with minimum depth and write output to a file?"
vcftools,vcftools_08,vcftools_08_10,alternative,Write output to a file after filter VCF to biallelic SNPs with minimum depth
vcftools,vcftools_09,vcftools_09_01,original,compute pairwise FST between two populations in quiet mode
vcftools,vcftools_09,vcftools_09_02,beginner,How do I compute pairwise FST between two populations in quiet mode?
vcftools,vcftools_09,vcftools_09_03,student,I need to compute pairwise FST between two populations in quiet mode
vcftools,vcftools_09,vcftools_09_04,polite,Please compute pairwise FST between two populations in quiet mode
vcftools,vcftools_09,vcftools_09_05,sysadmin,Use vcftools to compute pairwise FST between two populations in quiet mode
vcftools,vcftools_09,vcftools_09_06,goal_oriented,I want to compute pairwise FST between two populations in quiet mode
vcftools,vcftools_09,vcftools_09_07,expert,compute pairwise FST between two populations quiet mode
vcftools,vcftools_09,vcftools_09_08,detailed,I have data that I need to process: compute pairwise FST between two populations in quiet mode
vcftools,vcftools_09,vcftools_09_09,informal,"Hey, can you help me compute pairwise FST between two populations in quiet mode?"
vcftools,vcftools_09,vcftools_09_10,alternative,Perform: compute pairwise FST between two populations in quiet mode
vcftools,vcftools_10,vcftools_10_01,original,convert VCF to PLINK format for downstream analysis with default parameters
vcftools,vcftools_10,vcftools_10_02,beginner,How do I convert VCF to PLINK format for downstream analysis with default parameters?
vcftools,vcftools_10,vcftools_10_03,student,I need to convert VCF to PLINK format for downstream analysis with default parameters
vcftools,vcftools_10,vcftools_10_04,polite,Please convert VCF to PLINK format for downstream analysis with default parameters
vcftools,vcftools_10,vcftools_10_05,sysadmin,Use vcftools to convert VCF to PLINK format for downstream analysis with default parameters
vcftools,vcftools_10,vcftools_10_06,goal_oriented,I want to convert VCF to PLINK format for downstream analysis with default parameters
vcftools,vcftools_10,vcftools_10_07,expert,convert VCF PLINK format downstream analysis default parameters
vcftools,vcftools_10,vcftools_10_08,detailed,I have data that I need to process: convert VCF to PLINK format for downstream analysis with default parameters
vcftools,vcftools_10,vcftools_10_09,informal,"Hey, can you help me convert VCF to PLINK format for downstream analysis with default parameters?"
vcftools,vcftools_10,vcftools_10_10,alternative,"With default parameters, convert VCF to PLINK format for downstream analysis"
vep,vep_01,vep_01_01,original,annotate VCF variants with VEP using offline cache
vep,vep_01,vep_01_02,beginner,How do I annotate VCF variants with VEP using offline cache?
vep,vep_01,vep_01_03,student,I need to annotate VCF variants with VEP using offline cache
vep,vep_01,vep_01_04,polite,Please annotate VCF variants with VEP using offline cache
vep,vep_01,vep_01_05,sysadmin,Use vep to annotate VCF variants with VEP using offline cache
vep,vep_01,vep_01_06,goal_oriented,I want to annotate VCF variants with VEP using offline cache
vep,vep_01,vep_01_07,expert,annotate VCF variants VEP offline cache
vep,vep_01,vep_01_08,detailed,"I have data that I need to process: annotate VCF variants with VEP using offline cache, saving the result to a specified output file"
vep,vep_01,vep_01_09,informal,"Hey, can you help me annotate VCF variants with VEP using offline cache?"
vep,vep_01,vep_01_10,alternative,"With VEP using offline cache, annotate VCF variants"
vep,vep_02,vep_02_01,original,annotate with all standard functional predictions
vep,vep_02,vep_02_02,beginner,How do I annotate with all standard functional predictions?
vep,vep_02,vep_02_03,student,I need to annotate with all standard functional predictions
vep,vep_02,vep_02_04,polite,Please annotate with all standard functional predictions
vep,vep_02,vep_02_05,sysadmin,Use vep to annotate with all standard functional predictions
vep,vep_02,vep_02_06,goal_oriented,I want to annotate with all standard functional predictions
vep,vep_02,vep_02_07,expert,annotate all standard functional predictions
vep,vep_02,vep_02_08,detailed,"I have data that I need to process: annotate with all standard functional predictions, saving the result to a specified output file"
vep,vep_02,vep_02_09,informal,"Hey, can you help me annotate with all standard functional predictions?"
vep,vep_02,vep_02_10,alternative,"With all standard functional predictions, annotate"
vep,vep_03,vep_03_01,original,annotate and pick single most severe consequence per variant
vep,vep_03,vep_03_02,beginner,How do I annotate and pick single most severe consequence per variant?
vep,vep_03,vep_03_03,student,I need to annotate and pick single most severe consequence per variant
vep,vep_03,vep_03_04,polite,Please annotate and pick single most severe consequence per variant
vep,vep_03,vep_03_05,sysadmin,Use vep to annotate and pick single most severe consequence per variant
vep,vep_03,vep_03_06,goal_oriented,I want to annotate and pick single most severe consequence per variant
vep,vep_03,vep_03_07,expert,annotate pick single most severe consequence per variant
vep,vep_03,vep_03_08,detailed,"I have data that I need to process: annotate and pick single most severe consequence per variant, saving the result to a specified output file"
vep,vep_03,vep_03_09,informal,"Hey, can you help me annotate and pick single most severe consequence per variant?"
vep,vep_03,vep_03_10,alternative,Pick single most severe consequence per variant after annotate
vep,vep_04,vep_04_01,original,annotate with gnomAD population frequencies
vep,vep_04,vep_04_02,beginner,How do I annotate with gnomAD population frequencies?
vep,vep_04,vep_04_03,student,I need to annotate with gnomAD population frequencies
vep,vep_04,vep_04_04,polite,Please annotate with gnomAD population frequencies
vep,vep_04,vep_04_05,sysadmin,Use vep to annotate with gnomAD population frequencies
vep,vep_04,vep_04_06,goal_oriented,I want to annotate with gnomAD population frequencies
vep,vep_04,vep_04_07,expert,annotate gnomAD population frequencies
vep,vep_04,vep_04_08,detailed,"I have data that I need to process: annotate with gnomAD population frequencies, saving the result to a specified output file"
vep,vep_04,vep_04_09,informal,"Hey, can you help me annotate with gnomAD population frequencies?"
vep,vep_04,vep_04_10,alternative,"With gnomAD population frequencies, annotate"
vep,vep_05,vep_05_01,original,annotate VCF variants with VEP using offline cache with default parameters
vep,vep_05,vep_05_02,beginner,How do I annotate VCF variants with VEP using offline cache with default parameters?
vep,vep_05,vep_05_03,student,I need to annotate VCF variants with VEP using offline cache with default parameters
vep,vep_05,vep_05_04,polite,Please annotate VCF variants with VEP using offline cache with default parameters
vep,vep_05,vep_05_05,sysadmin,Use vep to annotate VCF variants with VEP using offline cache with default parameters
vep,vep_05,vep_05_06,goal_oriented,I want to annotate VCF variants with VEP using offline cache with default parameters
vep,vep_05,vep_05_07,expert,annotate VCF variants VEP offline cache default parameters
vep,vep_05,vep_05_08,detailed,"I have data that I need to process: annotate VCF variants with VEP using offline cache with default parameters, saving the result to a specified output file"
vep,vep_05,vep_05_09,informal,"Hey, can you help me annotate VCF variants with VEP using offline cache with default parameters?"
vep,vep_05,vep_05_10,alternative,"With VEP using offline cache with default parameters, annotate VCF variants"
vep,vep_06,vep_06_01,original,annotate with all standard functional predictions with verbose output
vep,vep_06,vep_06_02,beginner,How do I annotate with all standard functional predictions with verbose output?
vep,vep_06,vep_06_03,student,I need to annotate with all standard functional predictions with verbose output
vep,vep_06,vep_06_04,polite,Please annotate with all standard functional predictions with verbose output
vep,vep_06,vep_06_05,sysadmin,Use vep to annotate with all standard functional predictions with verbose output
vep,vep_06,vep_06_06,goal_oriented,I want to annotate with all standard functional predictions with verbose output
vep,vep_06,vep_06_07,expert,annotate all standard functional predictions verbose output
vep,vep_06,vep_06_08,detailed,"I have data that I need to process: annotate with all standard functional predictions with verbose output, saving the result to a specified output file"
vep,vep_06,vep_06_09,informal,"Hey, can you help me annotate with all standard functional predictions with verbose output?"
vep,vep_06,vep_06_10,alternative,"With all standard functional predictions with verbose output, annotate"
vep,vep_07,vep_07_01,original,annotate and pick single most severe consequence per variant using multiple threads
vep,vep_07,vep_07_02,beginner,How do I annotate and pick single most severe consequence per variant using multiple threads?
vep,vep_07,vep_07_03,student,I need to annotate and pick single most severe consequence per variant using multiple threads
vep,vep_07,vep_07_04,polite,Please annotate and pick single most severe consequence per variant using multiple threads
vep,vep_07,vep_07_05,sysadmin,Use vep to annotate and pick single most severe consequence per variant using multiple threads
vep,vep_07,vep_07_06,goal_oriented,I want to annotate and pick single most severe consequence per variant using multiple threads
vep,vep_07,vep_07_07,expert,annotate pick single most severe consequence per variant multiple threads
vep,vep_07,vep_07_08,detailed,"I have data that I need to process: annotate and pick single most severe consequence per variant using multiple threads, utilizing multiple CPU threads for speed, saving the result to a specified output file"
vep,vep_07,vep_07_09,informal,"Hey, can you help me annotate and pick single most severe consequence per variant using multiple threads?"
vep,vep_07,vep_07_10,alternative,Pick single most severe consequence per variant using multiple threads after annotate
vep,vep_08,vep_08_01,original,annotate with gnomAD population frequencies and write output to a file
vep,vep_08,vep_08_02,beginner,How do I annotate with gnomAD population frequencies and write output to a file?
vep,vep_08,vep_08_03,student,I need to annotate with gnomAD population frequencies and write output to a file
vep,vep_08,vep_08_04,polite,Please annotate with gnomAD population frequencies and write output to a file
vep,vep_08,vep_08_05,sysadmin,Use vep to annotate with gnomAD population frequencies and write output to a file
vep,vep_08,vep_08_06,goal_oriented,I want to annotate with gnomAD population frequencies and write output to a file
vep,vep_08,vep_08_07,expert,annotate gnomAD population frequencies write output file
vep,vep_08,vep_08_08,detailed,"I have data that I need to process: annotate with gnomAD population frequencies and write output to a file, saving the result to a specified output file"
vep,vep_08,vep_08_09,informal,"Hey, can you help me annotate with gnomAD population frequencies and write output to a file?"
vep,vep_08,vep_08_10,alternative,Write output to a file after annotate with gnomAD population frequencies
vep,vep_09,vep_09_01,original,annotate VCF variants with VEP using offline cache in quiet mode
vep,vep_09,vep_09_02,beginner,How do I annotate VCF variants with VEP using offline cache in quiet mode?
vep,vep_09,vep_09_03,student,I need to annotate VCF variants with VEP using offline cache in quiet mode
vep,vep_09,vep_09_04,polite,Please annotate VCF variants with VEP using offline cache in quiet mode
vep,vep_09,vep_09_05,sysadmin,Use vep to annotate VCF variants with VEP using offline cache in quiet mode
vep,vep_09,vep_09_06,goal_oriented,I want to annotate VCF variants with VEP using offline cache in quiet mode
vep,vep_09,vep_09_07,expert,annotate VCF variants VEP offline cache quiet mode
vep,vep_09,vep_09_08,detailed,"I have data that I need to process: annotate VCF variants with VEP using offline cache in quiet mode, saving the result to a specified output file"
vep,vep_09,vep_09_09,informal,"Hey, can you help me annotate VCF variants with VEP using offline cache in quiet mode?"
vep,vep_09,vep_09_10,alternative,"With VEP using offline cache in quiet mode, annotate VCF variants"
vep,vep_10,vep_10_01,original,annotate with all standard functional predictions with default parameters
vep,vep_10,vep_10_02,beginner,How do I annotate with all standard functional predictions with default parameters?
vep,vep_10,vep_10_03,student,I need to annotate with all standard functional predictions with default parameters
vep,vep_10,vep_10_04,polite,Please annotate with all standard functional predictions with default parameters
vep,vep_10,vep_10_05,sysadmin,Use vep to annotate with all standard functional predictions with default parameters
vep,vep_10,vep_10_06,goal_oriented,I want to annotate with all standard functional predictions with default parameters
vep,vep_10,vep_10_07,expert,annotate all standard functional predictions default parameters
vep,vep_10,vep_10_08,detailed,"I have data that I need to process: annotate with all standard functional predictions with default parameters, saving the result to a specified output file"
vep,vep_10,vep_10_09,informal,"Hey, can you help me annotate with all standard functional predictions with default parameters?"
vep,vep_10,vep_10_10,alternative,"With all standard functional predictions with default parameters, annotate"
verkko,verkko_01,verkko_01_01,original,assemble a genome using only HiFi reads
verkko,verkko_01,verkko_01_02,beginner,How do I assemble a genome using only HiFi reads?
verkko,verkko_01,verkko_01_03,student,I need to assemble a genome using only HiFi reads
verkko,verkko_01,verkko_01_04,polite,Please assemble a genome using only HiFi reads
verkko,verkko_01,verkko_01_05,sysadmin,Use verkko to assemble a genome using only HiFi reads
verkko,verkko_01,verkko_01_06,goal_oriented,I want to assemble a genome using only HiFi reads
verkko,verkko_01,verkko_01_07,expert,assemble genome only HiFi reads
verkko,verkko_01,verkko_01_08,detailed,"I have data that I need to process: assemble a genome using only HiFi reads, utilizing multiple CPU threads for speed"
verkko,verkko_01,verkko_01_09,informal,"Hey, can you help me assemble a genome using only HiFi reads?"
verkko,verkko_01,verkko_01_10,alternative,Perform: assemble a genome using only HiFi reads
verkko,verkko_02,verkko_02_01,original,assemble a genome with both HiFi and ONT reads for maximum continuity
verkko,verkko_02,verkko_02_02,beginner,How do I assemble a genome with both HiFi and ONT reads for maximum continuity?
verkko,verkko_02,verkko_02_03,student,I need to assemble a genome with both HiFi and ONT reads for maximum continuity
verkko,verkko_02,verkko_02_04,polite,Please assemble a genome with both HiFi and ONT reads for maximum continuity
verkko,verkko_02,verkko_02_05,sysadmin,Use verkko to assemble a genome with both HiFi and ONT reads for maximum continuity
verkko,verkko_02,verkko_02_06,goal_oriented,I want to assemble a genome with both HiFi and ONT reads for maximum continuity
verkko,verkko_02,verkko_02_07,expert,assemble genome both HiFi ONT reads maximum continuity
verkko,verkko_02,verkko_02_08,detailed,"I have data that I need to process: assemble a genome with both HiFi and ONT reads for maximum continuity, utilizing multiple CPU threads for speed"
verkko,verkko_02,verkko_02_09,informal,"Hey, can you help me assemble a genome with both HiFi and ONT reads for maximum continuity?"
verkko,verkko_02,verkko_02_10,alternative,ONT reads for maximum continuity after assemble a genome with both HiFi
verkko,verkko_03,verkko_03_01,original,perform haplotype-resolved assembly with trio binning
verkko,verkko_03,verkko_03_02,beginner,How do I perform haplotype-resolved assembly with trio binning?
verkko,verkko_03,verkko_03_03,student,I need to perform haplotype-resolved assembly with trio binning
verkko,verkko_03,verkko_03_04,polite,Please perform haplotype-resolved assembly with trio binning
verkko,verkko_03,verkko_03_05,sysadmin,Use verkko to perform haplotype-resolved assembly with trio binning
verkko,verkko_03,verkko_03_06,goal_oriented,I want to perform haplotype-resolved assembly with trio binning
verkko,verkko_03,verkko_03_07,expert,perform haplotype-resolved assembly trio binning
verkko,verkko_03,verkko_03_08,detailed,"I have data that I need to process: perform haplotype-resolved assembly with trio binning, utilizing multiple CPU threads for speed"
verkko,verkko_03,verkko_03_09,informal,"Hey, can you help me perform haplotype-resolved assembly with trio binning?"
verkko,verkko_03,verkko_03_10,alternative,"With trio binning, perform haplotype-resolved assembly"
verkko,verkko_04,verkko_04_01,original,run Verkko on a cluster using Slurm via Snakemake
verkko,verkko_04,verkko_04_02,beginner,How do I run Verkko on a cluster using Slurm via Snakemake?
verkko,verkko_04,verkko_04_03,student,I need to run Verkko on a cluster using Slurm via Snakemake
verkko,verkko_04,verkko_04_04,polite,Please run Verkko on a cluster using Slurm via Snakemake
verkko,verkko_04,verkko_04_05,sysadmin,Use verkko to run Verkko on a cluster using Slurm via Snakemake
verkko,verkko_04,verkko_04_06,goal_oriented,I want to run Verkko on a cluster using Slurm via Snakemake
verkko,verkko_04,verkko_04_07,expert,run Verkko on cluster Slurm via Snakemake
verkko,verkko_04,verkko_04_08,detailed,"I have data that I need to process: run Verkko on a cluster using Slurm via Snakemake, utilizing multiple CPU threads for speed"
verkko,verkko_04,verkko_04_09,informal,"Hey, can you help me run Verkko on a cluster using Slurm via Snakemake?"
verkko,verkko_04,verkko_04_10,alternative,Perform: run Verkko on a cluster using Slurm via Snakemake
verkko,verkko_05,verkko_05_01,original,resume an interrupted Verkko assembly
verkko,verkko_05,verkko_05_02,beginner,How do I resume an interrupted Verkko assembly?
verkko,verkko_05,verkko_05_03,student,I need to resume an interrupted Verkko assembly
verkko,verkko_05,verkko_05_04,polite,Please resume an interrupted Verkko assembly
verkko,verkko_05,verkko_05_05,sysadmin,Use verkko to resume an interrupted Verkko assembly
verkko,verkko_05,verkko_05_06,goal_oriented,I want to resume an interrupted Verkko assembly
verkko,verkko_05,verkko_05_07,expert,resume interrupted Verkko assembly
verkko,verkko_05,verkko_05_08,detailed,"I have data that I need to process: resume an interrupted Verkko assembly, utilizing multiple CPU threads for speed"
verkko,verkko_05,verkko_05_09,informal,"Hey, can you help me resume an interrupted Verkko assembly?"
verkko,verkko_05,verkko_05_10,alternative,Perform: resume an interrupted Verkko assembly
verkko,verkko_06,verkko_06_01,original,assemble with ONT reads only (no HiFi)
verkko,verkko_06,verkko_06_02,beginner,How do I assemble with ONT reads only (no HiFi)?
verkko,verkko_06,verkko_06_03,student,I need to assemble with ONT reads only (no HiFi)
verkko,verkko_06,verkko_06_04,polite,Please assemble with ONT reads only (no HiFi)
verkko,verkko_06,verkko_06_05,sysadmin,Use verkko to assemble with ONT reads only (no HiFi)
verkko,verkko_06,verkko_06_06,goal_oriented,I want to assemble with ONT reads only (no HiFi)
verkko,verkko_06,verkko_06_07,expert,assemble ONT reads only (no HiFi)
verkko,verkko_06,verkko_06_08,detailed,"I have data that I need to process: assemble with ONT reads only (no HiFi), utilizing multiple CPU threads for speed"
verkko,verkko_06,verkko_06_09,informal,"Hey, can you help me assemble with ONT reads only (no HiFi)?"
verkko,verkko_06,verkko_06_10,alternative,"With ONT reads only (no HiFi), assemble"
verkko,verkko_07,verkko_07_01,original,assemble a genome using only HiFi reads using multiple threads
verkko,verkko_07,verkko_07_02,beginner,How do I assemble a genome using only HiFi reads using multiple threads?
verkko,verkko_07,verkko_07_03,student,I need to assemble a genome using only HiFi reads using multiple threads
verkko,verkko_07,verkko_07_04,polite,Please assemble a genome using only HiFi reads using multiple threads
verkko,verkko_07,verkko_07_05,sysadmin,Use verkko to assemble a genome using only HiFi reads using multiple threads
verkko,verkko_07,verkko_07_06,goal_oriented,I want to assemble a genome using only HiFi reads using multiple threads
verkko,verkko_07,verkko_07_07,expert,assemble genome only HiFi reads multiple threads
verkko,verkko_07,verkko_07_08,detailed,"I have data that I need to process: assemble a genome using only HiFi reads using multiple threads, utilizing multiple CPU threads for speed"
verkko,verkko_07,verkko_07_09,informal,"Hey, can you help me assemble a genome using only HiFi reads using multiple threads?"
verkko,verkko_07,verkko_07_10,alternative,Perform: assemble a genome using only HiFi reads using multiple threads
verkko,verkko_08,verkko_08_01,original,assemble a genome with both HiFi and ONT reads for maximum continuity and write output to a file
verkko,verkko_08,verkko_08_02,beginner,How do I assemble a genome with both HiFi and ONT reads for maximum continuity and write output to a file?
verkko,verkko_08,verkko_08_03,student,I need to assemble a genome with both HiFi and ONT reads for maximum continuity and write output to a file
verkko,verkko_08,verkko_08_04,polite,Please assemble a genome with both HiFi and ONT reads for maximum continuity and write output to a file
verkko,verkko_08,verkko_08_05,sysadmin,Use verkko to assemble a genome with both HiFi and ONT reads for maximum continuity and write output to a file
verkko,verkko_08,verkko_08_06,goal_oriented,I want to assemble a genome with both HiFi and ONT reads for maximum continuity and write output to a file
verkko,verkko_08,verkko_08_07,expert,assemble genome both HiFi ONT reads maximum continuity write output file
verkko,verkko_08,verkko_08_08,detailed,"I have data that I need to process: assemble a genome with both HiFi and ONT reads for maximum continuity and write output to a file, utilizing multiple CPU threads for speed, saving the result to a specified output file"
verkko,verkko_08,verkko_08_09,informal,"Hey, can you help me assemble a genome with both HiFi and ONT reads for maximum continuity and write output to a file?"
verkko,verkko_08,verkko_08_10,alternative,ONT reads for maximum continuity and write output to a file after assemble a genome with both HiFi
verkko,verkko_09,verkko_09_01,original,perform haplotype-resolved assembly with trio binning in quiet mode
verkko,verkko_09,verkko_09_02,beginner,How do I perform haplotype-resolved assembly with trio binning in quiet mode?
verkko,verkko_09,verkko_09_03,student,I need to perform haplotype-resolved assembly with trio binning in quiet mode
verkko,verkko_09,verkko_09_04,polite,Please perform haplotype-resolved assembly with trio binning in quiet mode
verkko,verkko_09,verkko_09_05,sysadmin,Use verkko to perform haplotype-resolved assembly with trio binning in quiet mode
verkko,verkko_09,verkko_09_06,goal_oriented,I want to perform haplotype-resolved assembly with trio binning in quiet mode
verkko,verkko_09,verkko_09_07,expert,perform haplotype-resolved assembly trio binning quiet mode
verkko,verkko_09,verkko_09_08,detailed,"I have data that I need to process: perform haplotype-resolved assembly with trio binning in quiet mode, utilizing multiple CPU threads for speed"
verkko,verkko_09,verkko_09_09,informal,"Hey, can you help me perform haplotype-resolved assembly with trio binning in quiet mode?"
verkko,verkko_09,verkko_09_10,alternative,"With trio binning in quiet mode, perform haplotype-resolved assembly"
verkko,verkko_10,verkko_10_01,original,run Verkko on a cluster using Slurm via Snakemake with default parameters
verkko,verkko_10,verkko_10_02,beginner,How do I run Verkko on a cluster using Slurm via Snakemake with default parameters?
verkko,verkko_10,verkko_10_03,student,I need to run Verkko on a cluster using Slurm via Snakemake with default parameters
verkko,verkko_10,verkko_10_04,polite,Please run Verkko on a cluster using Slurm via Snakemake with default parameters
verkko,verkko_10,verkko_10_05,sysadmin,Use verkko to run Verkko on a cluster using Slurm via Snakemake with default parameters
verkko,verkko_10,verkko_10_06,goal_oriented,I want to run Verkko on a cluster using Slurm via Snakemake with default parameters
verkko,verkko_10,verkko_10_07,expert,run Verkko on cluster Slurm via Snakemake default parameters
verkko,verkko_10,verkko_10_08,detailed,"I have data that I need to process: run Verkko on a cluster using Slurm via Snakemake with default parameters, utilizing multiple CPU threads for speed"
verkko,verkko_10,verkko_10_09,informal,"Hey, can you help me run Verkko on a cluster using Slurm via Snakemake with default parameters?"
verkko,verkko_10,verkko_10_10,alternative,"With default parameters, run Verkko on a cluster using Slurm via Snakemake"
wget,wget_01,wget_01_01,original,download a file and save with its remote filename
wget,wget_01,wget_01_02,beginner,How do I download a file and save with its remote filename?
wget,wget_01,wget_01_03,student,I need to download a file and save with its remote filename
wget,wget_01,wget_01_04,polite,Please download a file and save with its remote filename
wget,wget_01,wget_01_05,sysadmin,Use wget to download a file and save with its remote filename
wget,wget_01,wget_01_06,goal_oriented,I want to download a file and save with its remote filename
wget,wget_01,wget_01_07,expert,download file save its remote filename
wget,wget_01,wget_01_08,detailed,I have data that I need to process: download a file and save with its remote filename
wget,wget_01,wget_01_09,informal,"Hey, can you help me download a file and save with its remote filename?"
wget,wget_01,wget_01_10,alternative,Save with its remote filename after download a file
wget,wget_02,wget_02_01,original,download a file with a custom local filename
wget,wget_02,wget_02_02,beginner,How do I download a file with a custom local filename?
wget,wget_02,wget_02_03,student,I need to download a file with a custom local filename
wget,wget_02,wget_02_04,polite,Please download a file with a custom local filename
wget,wget_02,wget_02_05,sysadmin,Use wget to download a file with a custom local filename
wget,wget_02,wget_02_06,goal_oriented,I want to download a file with a custom local filename
wget,wget_02,wget_02_07,expert,download file custom local filename
wget,wget_02,wget_02_08,detailed,I have data that I need to process: download a file with a custom local filename
wget,wget_02,wget_02_09,informal,"Hey, can you help me download a file with a custom local filename?"
wget,wget_02,wget_02_10,alternative,"With a custom local filename, download a file"
wget,wget_03,wget_03_01,original,resume an interrupted download
wget,wget_03,wget_03_02,beginner,How do I resume an interrupted download?
wget,wget_03,wget_03_03,student,I need to resume an interrupted download
wget,wget_03,wget_03_04,polite,Please resume an interrupted download
wget,wget_03,wget_03_05,sysadmin,Use wget to resume an interrupted download
wget,wget_03,wget_03_06,goal_oriented,I want to resume an interrupted download
wget,wget_03,wget_03_07,expert,resume interrupted download
wget,wget_03,wget_03_08,detailed,I have data that I need to process: resume an interrupted download
wget,wget_03,wget_03_09,informal,"Hey, can you help me resume an interrupted download?"
wget,wget_03,wget_03_10,alternative,Perform: resume an interrupted download
wget,wget_04,wget_04_01,original,download in the background with logging
wget,wget_04,wget_04_02,beginner,How do I download in the background with logging?
wget,wget_04,wget_04_03,student,I need to download in the background with logging
wget,wget_04,wget_04_04,polite,Please download in the background with logging
wget,wget_04,wget_04_05,sysadmin,Use wget to download in the background with logging
wget,wget_04,wget_04_06,goal_oriented,I want to download in the background with logging
wget,wget_04,wget_04_07,expert,download background logging
wget,wget_04,wget_04_08,detailed,I have data that I need to process: download in the background with logging
wget,wget_04,wget_04_09,informal,"Hey, can you help me download in the background with logging?"
wget,wget_04,wget_04_10,alternative,"With logging, download in the background"
wget,wget_05,wget_05_01,original,download with retry and timeout settings
wget,wget_05,wget_05_02,beginner,How do I download with retry and timeout settings?
wget,wget_05,wget_05_03,student,I need to download with retry and timeout settings
wget,wget_05,wget_05_04,polite,Please download with retry and timeout settings
wget,wget_05,wget_05_05,sysadmin,Use wget to download with retry and timeout settings
wget,wget_05,wget_05_06,goal_oriented,I want to download with retry and timeout settings
wget,wget_05,wget_05_07,expert,download retry timeout settings
wget,wget_05,wget_05_08,detailed,I have data that I need to process: download with retry and timeout settings
wget,wget_05,wget_05_09,informal,"Hey, can you help me download with retry and timeout settings?"
wget,wget_05,wget_05_10,alternative,Timeout settings after download with retry
wget,wget_06,wget_06_01,original,mirror a website section without going to parent directories
wget,wget_06,wget_06_02,beginner,How do I mirror a website section without going to parent directories?
wget,wget_06,wget_06_03,student,I need to mirror a website section without going to parent directories
wget,wget_06,wget_06_04,polite,Please mirror a website section without going to parent directories
wget,wget_06,wget_06_05,sysadmin,Use wget to mirror a website section without going to parent directories
wget,wget_06,wget_06_06,goal_oriented,I want to mirror a website section without going to parent directories
wget,wget_06,wget_06_07,expert,mirror website section without going parent directories
wget,wget_06,wget_06_08,detailed,I have data that I need to process: mirror a website section without going to parent directories
wget,wget_06,wget_06_09,informal,"Hey, can you help me mirror a website section without going to parent directories?"
wget,wget_06,wget_06_10,alternative,Output parent directories by performing: mirror a website section without going
wget,wget_07,wget_07_01,original,download only PDF files recursively from a site
wget,wget_07,wget_07_02,beginner,How do I download only PDF files recursively from a site?
wget,wget_07,wget_07_03,student,I need to download only PDF files recursively from a site
wget,wget_07,wget_07_04,polite,Please download only PDF files recursively from a site
wget,wget_07,wget_07_05,sysadmin,Use wget to download only PDF files recursively from a site
wget,wget_07,wget_07_06,goal_oriented,I want to download only PDF files recursively from a site
wget,wget_07,wget_07_07,expert,download only PDF files recursively site
wget,wget_07,wget_07_08,detailed,I have data that I need to process: download only PDF files recursively from a site
wget,wget_07,wget_07_09,informal,"Hey, can you help me download only PDF files recursively from a site?"
wget,wget_07,wget_07_10,alternative,Perform: download only PDF files recursively from a site
wget,wget_08,wget_08_01,original,download a list of URLs from a file
wget,wget_08,wget_08_02,beginner,How do I download a list of URLs from a file?
wget,wget_08,wget_08_03,student,I need to download a list of URLs from a file
wget,wget_08,wget_08_04,polite,Please download a list of URLs from a file
wget,wget_08,wget_08_05,sysadmin,Use wget to download a list of URLs from a file
wget,wget_08,wget_08_06,goal_oriented,I want to download a list of URLs from a file
wget,wget_08,wget_08_07,expert,download list of URLs file
wget,wget_08,wget_08_08,detailed,I have data that I need to process: download a list of URLs from a file
wget,wget_08,wget_08_09,informal,"Hey, can you help me download a list of URLs from a file?"
wget,wget_08,wget_08_10,alternative,Perform: download a list of URLs from a file
wget,wget_09,wget_09_01,original,send a POST request and download the response
wget,wget_09,wget_09_02,beginner,How do I send a POST request and download the response?
wget,wget_09,wget_09_03,student,I need to send a POST request and download the response
wget,wget_09,wget_09_04,polite,Please send a POST request and download the response
wget,wget_09,wget_09_05,sysadmin,Use wget to send a POST request and download the response
wget,wget_09,wget_09_06,goal_oriented,I want to send a POST request and download the response
wget,wget_09,wget_09_07,expert,send POST request download response
wget,wget_09,wget_09_08,detailed,I have data that I need to process: send a POST request and download the response
wget,wget_09,wget_09_09,informal,"Hey, can you help me send a POST request and download the response?"
wget,wget_09,wget_09_10,alternative,Download the response after send a POST request
wget,wget_10,wget_10_01,original,download with a custom User-Agent header
wget,wget_10,wget_10_02,beginner,How do I download with a custom User-Agent header?
wget,wget_10,wget_10_03,student,I need to download with a custom User-Agent header
wget,wget_10,wget_10_04,polite,Please download with a custom User-Agent header
wget,wget_10,wget_10_05,sysadmin,Use wget to download with a custom User-Agent header
wget,wget_10,wget_10_06,goal_oriented,I want to download with a custom User-Agent header
wget,wget_10,wget_10_07,expert,download custom User-Agent header
wget,wget_10,wget_10_08,detailed,I have data that I need to process: download with a custom User-Agent header
wget,wget_10,wget_10_09,informal,"Hey, can you help me download with a custom User-Agent header?"
wget,wget_10,wget_10_10,alternative,"With a custom User-Agent header, download"
whatshap,whatshap_01,whatshap_01_01,original,phase variants using long reads (ONT/PacBio)
whatshap,whatshap_01,whatshap_01_02,beginner,How do I phase variants using long reads (ONT/PacBio)?
whatshap,whatshap_01,whatshap_01_03,student,I need to phase variants using long reads (ONT/PacBio)
whatshap,whatshap_01,whatshap_01_04,polite,Please phase variants using long reads (ONT/PacBio)
whatshap,whatshap_01,whatshap_01_05,sysadmin,Use whatshap to phase variants using long reads (ONT/PacBio)
whatshap,whatshap_01,whatshap_01_06,goal_oriented,I want to phase variants using long reads (ONT/PacBio)
whatshap,whatshap_01,whatshap_01_07,expert,phase variants long reads (ONT/PacBio)
whatshap,whatshap_01,whatshap_01_08,detailed,"I have data that I need to process: phase variants using long reads (ONT/PacBio), saving the result to a specified output file"
whatshap,whatshap_01,whatshap_01_09,informal,"Hey, can you help me phase variants using long reads (ONT/PacBio)?"
whatshap,whatshap_01,whatshap_01_10,alternative,Perform: phase variants using long reads (ONT/PacBio)
whatshap,whatshap_02,whatshap_02_01,original,phase variants using Illumina short reads
whatshap,whatshap_02,whatshap_02_02,beginner,How do I phase variants using Illumina short reads?
whatshap,whatshap_02,whatshap_02_03,student,I need to phase variants using Illumina short reads
whatshap,whatshap_02,whatshap_02_04,polite,Please phase variants using Illumina short reads
whatshap,whatshap_02,whatshap_02_05,sysadmin,Use whatshap to phase variants using Illumina short reads
whatshap,whatshap_02,whatshap_02_06,goal_oriented,I want to phase variants using Illumina short reads
whatshap,whatshap_02,whatshap_02_07,expert,phase variants Illumina short reads
whatshap,whatshap_02,whatshap_02_08,detailed,"I have data that I need to process: phase variants using Illumina short reads, saving the result to a specified output file"
whatshap,whatshap_02,whatshap_02_09,informal,"Hey, can you help me phase variants using Illumina short reads?"
whatshap,whatshap_02,whatshap_02_10,alternative,Perform: phase variants using Illumina short reads
whatshap,whatshap_03,whatshap_03_01,original,tag reads with haplotype information after phasing
whatshap,whatshap_03,whatshap_03_02,beginner,How do I tag reads with haplotype information after phasing?
whatshap,whatshap_03,whatshap_03_03,student,I need to tag reads with haplotype information after phasing
whatshap,whatshap_03,whatshap_03_04,polite,Please tag reads with haplotype information after phasing
whatshap,whatshap_03,whatshap_03_05,sysadmin,Use whatshap to tag reads with haplotype information after phasing
whatshap,whatshap_03,whatshap_03_06,goal_oriented,I want to tag reads with haplotype information after phasing
whatshap,whatshap_03,whatshap_03_07,expert,tag reads haplotype information after phasing
whatshap,whatshap_03,whatshap_03_08,detailed,"I have data that I need to process: tag reads with haplotype information after phasing, saving the result to a specified output file"
whatshap,whatshap_03,whatshap_03_09,informal,"Hey, can you help me tag reads with haplotype information after phasing?"
whatshap,whatshap_03,whatshap_03_10,alternative,"With haplotype information after phasing, tag reads"
whatshap,whatshap_04,whatshap_04_01,original,compute phasing statistics from a phased VCF
whatshap,whatshap_04,whatshap_04_02,beginner,How do I compute phasing statistics from a phased VCF?
whatshap,whatshap_04,whatshap_04_03,student,I need to compute phasing statistics from a phased VCF
whatshap,whatshap_04,whatshap_04_04,polite,Please compute phasing statistics from a phased VCF
whatshap,whatshap_04,whatshap_04_05,sysadmin,Use whatshap to compute phasing statistics from a phased VCF
whatshap,whatshap_04,whatshap_04_06,goal_oriented,I want to compute phasing statistics from a phased VCF
whatshap,whatshap_04,whatshap_04_07,expert,compute phasing statistics phased VCF
whatshap,whatshap_04,whatshap_04_08,detailed,I have data that I need to process: compute phasing statistics from a phased VCF
whatshap,whatshap_04,whatshap_04_09,informal,"Hey, can you help me compute phasing statistics from a phased VCF?"
whatshap,whatshap_04,whatshap_04_10,alternative,Perform: compute phasing statistics from a phased VCF
whatshap,whatshap_05,whatshap_05_01,original,phase variants using long reads (ONT/PacBio) with default parameters
whatshap,whatshap_05,whatshap_05_02,beginner,How do I phase variants using long reads (ONT/PacBio) with default parameters?
whatshap,whatshap_05,whatshap_05_03,student,I need to phase variants using long reads (ONT/PacBio) with default parameters
whatshap,whatshap_05,whatshap_05_04,polite,Please phase variants using long reads (ONT/PacBio) with default parameters
whatshap,whatshap_05,whatshap_05_05,sysadmin,Use whatshap to phase variants using long reads (ONT/PacBio) with default parameters
whatshap,whatshap_05,whatshap_05_06,goal_oriented,I want to phase variants using long reads (ONT/PacBio) with default parameters
whatshap,whatshap_05,whatshap_05_07,expert,phase variants long reads (ONT/PacBio) default parameters
whatshap,whatshap_05,whatshap_05_08,detailed,"I have data that I need to process: phase variants using long reads (ONT/PacBio) with default parameters, saving the result to a specified output file"
whatshap,whatshap_05,whatshap_05_09,informal,"Hey, can you help me phase variants using long reads (ONT/PacBio) with default parameters?"
whatshap,whatshap_05,whatshap_05_10,alternative,"With default parameters, phase variants using long reads (ONT/PacBio)"
whatshap,whatshap_06,whatshap_06_01,original,phase variants using Illumina short reads with verbose output
whatshap,whatshap_06,whatshap_06_02,beginner,How do I phase variants using Illumina short reads with verbose output?
whatshap,whatshap_06,whatshap_06_03,student,I need to phase variants using Illumina short reads with verbose output
whatshap,whatshap_06,whatshap_06_04,polite,Please phase variants using Illumina short reads with verbose output
whatshap,whatshap_06,whatshap_06_05,sysadmin,Use whatshap to phase variants using Illumina short reads with verbose output
whatshap,whatshap_06,whatshap_06_06,goal_oriented,I want to phase variants using Illumina short reads with verbose output
whatshap,whatshap_06,whatshap_06_07,expert,phase variants Illumina short reads verbose output
whatshap,whatshap_06,whatshap_06_08,detailed,"I have data that I need to process: phase variants using Illumina short reads with verbose output, saving the result to a specified output file"
whatshap,whatshap_06,whatshap_06_09,informal,"Hey, can you help me phase variants using Illumina short reads with verbose output?"
whatshap,whatshap_06,whatshap_06_10,alternative,"With verbose output, phase variants using Illumina short reads"
whatshap,whatshap_07,whatshap_07_01,original,tag reads with haplotype information after phasing using multiple threads
whatshap,whatshap_07,whatshap_07_02,beginner,How do I tag reads with haplotype information after phasing using multiple threads?
whatshap,whatshap_07,whatshap_07_03,student,I need to tag reads with haplotype information after phasing using multiple threads
whatshap,whatshap_07,whatshap_07_04,polite,Please tag reads with haplotype information after phasing using multiple threads
whatshap,whatshap_07,whatshap_07_05,sysadmin,Use whatshap to tag reads with haplotype information after phasing using multiple threads
whatshap,whatshap_07,whatshap_07_06,goal_oriented,I want to tag reads with haplotype information after phasing using multiple threads
whatshap,whatshap_07,whatshap_07_07,expert,tag reads haplotype information after phasing multiple threads
whatshap,whatshap_07,whatshap_07_08,detailed,"I have data that I need to process: tag reads with haplotype information after phasing using multiple threads, utilizing multiple CPU threads for speed, saving the result to a specified output file"
whatshap,whatshap_07,whatshap_07_09,informal,"Hey, can you help me tag reads with haplotype information after phasing using multiple threads?"
whatshap,whatshap_07,whatshap_07_10,alternative,"With haplotype information after phasing using multiple threads, tag reads"
whatshap,whatshap_08,whatshap_08_01,original,compute phasing statistics from a phased VCF and write output to a file
whatshap,whatshap_08,whatshap_08_02,beginner,How do I compute phasing statistics from a phased VCF and write output to a file?
whatshap,whatshap_08,whatshap_08_03,student,I need to compute phasing statistics from a phased VCF and write output to a file
whatshap,whatshap_08,whatshap_08_04,polite,Please compute phasing statistics from a phased VCF and write output to a file
whatshap,whatshap_08,whatshap_08_05,sysadmin,Use whatshap to compute phasing statistics from a phased VCF and write output to a file
whatshap,whatshap_08,whatshap_08_06,goal_oriented,I want to compute phasing statistics from a phased VCF and write output to a file
whatshap,whatshap_08,whatshap_08_07,expert,compute phasing statistics phased VCF write output file
whatshap,whatshap_08,whatshap_08_08,detailed,"I have data that I need to process: compute phasing statistics from a phased VCF and write output to a file, saving the result to a specified output file"
whatshap,whatshap_08,whatshap_08_09,informal,"Hey, can you help me compute phasing statistics from a phased VCF and write output to a file?"
whatshap,whatshap_08,whatshap_08_10,alternative,Write output to a file after compute phasing statistics from a phased VCF
whatshap,whatshap_09,whatshap_09_01,original,phase variants using long reads (ONT/PacBio) in quiet mode
whatshap,whatshap_09,whatshap_09_02,beginner,How do I phase variants using long reads (ONT/PacBio) in quiet mode?
whatshap,whatshap_09,whatshap_09_03,student,I need to phase variants using long reads (ONT/PacBio) in quiet mode
whatshap,whatshap_09,whatshap_09_04,polite,Please phase variants using long reads (ONT/PacBio) in quiet mode
whatshap,whatshap_09,whatshap_09_05,sysadmin,Use whatshap to phase variants using long reads (ONT/PacBio) in quiet mode
whatshap,whatshap_09,whatshap_09_06,goal_oriented,I want to phase variants using long reads (ONT/PacBio) in quiet mode
whatshap,whatshap_09,whatshap_09_07,expert,phase variants long reads (ONT/PacBio) quiet mode
whatshap,whatshap_09,whatshap_09_08,detailed,"I have data that I need to process: phase variants using long reads (ONT/PacBio) in quiet mode, saving the result to a specified output file"
whatshap,whatshap_09,whatshap_09_09,informal,"Hey, can you help me phase variants using long reads (ONT/PacBio) in quiet mode?"
whatshap,whatshap_09,whatshap_09_10,alternative,Perform: phase variants using long reads (ONT/PacBio) in quiet mode
whatshap,whatshap_10,whatshap_10_01,original,phase variants using Illumina short reads with default parameters
whatshap,whatshap_10,whatshap_10_02,beginner,How do I phase variants using Illumina short reads with default parameters?
whatshap,whatshap_10,whatshap_10_03,student,I need to phase variants using Illumina short reads with default parameters
whatshap,whatshap_10,whatshap_10_04,polite,Please phase variants using Illumina short reads with default parameters
whatshap,whatshap_10,whatshap_10_05,sysadmin,Use whatshap to phase variants using Illumina short reads with default parameters
whatshap,whatshap_10,whatshap_10_06,goal_oriented,I want to phase variants using Illumina short reads with default parameters
whatshap,whatshap_10,whatshap_10_07,expert,phase variants Illumina short reads default parameters
whatshap,whatshap_10,whatshap_10_08,detailed,"I have data that I need to process: phase variants using Illumina short reads with default parameters, saving the result to a specified output file"
whatshap,whatshap_10,whatshap_10_09,informal,"Hey, can you help me phase variants using Illumina short reads with default parameters?"
whatshap,whatshap_10,whatshap_10_10,alternative,"With default parameters, phase variants using Illumina short reads"
wtdbg2,wtdbg2_01,wtdbg2_01_01,original,assemble genome from Oxford Nanopore reads
wtdbg2,wtdbg2_01,wtdbg2_01_02,beginner,How do I assemble genome from Oxford Nanopore reads?
wtdbg2,wtdbg2_01,wtdbg2_01_03,student,I need to assemble genome from Oxford Nanopore reads
wtdbg2,wtdbg2_01,wtdbg2_01_04,polite,Please assemble genome from Oxford Nanopore reads
wtdbg2,wtdbg2_01,wtdbg2_01_05,sysadmin,Use wtdbg2 to assemble genome from Oxford Nanopore reads
wtdbg2,wtdbg2_01,wtdbg2_01_06,goal_oriented,I want to assemble genome from Oxford Nanopore reads
wtdbg2,wtdbg2_01,wtdbg2_01_07,expert,assemble genome Oxford Nanopore reads
wtdbg2,wtdbg2_01,wtdbg2_01_08,detailed,"I have data that I need to process: assemble genome from Oxford Nanopore reads, utilizing multiple CPU threads for speed"
wtdbg2,wtdbg2_01,wtdbg2_01_09,informal,"Hey, can you help me assemble genome from Oxford Nanopore reads?"
wtdbg2,wtdbg2_01,wtdbg2_01_10,alternative,Perform: assemble genome from Oxford Nanopore reads
wtdbg2,wtdbg2_02,wtdbg2_02_01,original,assemble genome from PacBio HiFi reads
wtdbg2,wtdbg2_02,wtdbg2_02_02,beginner,How do I assemble genome from PacBio HiFi reads?
wtdbg2,wtdbg2_02,wtdbg2_02_03,student,I need to assemble genome from PacBio HiFi reads
wtdbg2,wtdbg2_02,wtdbg2_02_04,polite,Please assemble genome from PacBio HiFi reads
wtdbg2,wtdbg2_02,wtdbg2_02_05,sysadmin,Use wtdbg2 to assemble genome from PacBio HiFi reads
wtdbg2,wtdbg2_02,wtdbg2_02_06,goal_oriented,I want to assemble genome from PacBio HiFi reads
wtdbg2,wtdbg2_02,wtdbg2_02_07,expert,assemble genome PacBio HiFi reads
wtdbg2,wtdbg2_02,wtdbg2_02_08,detailed,"I have data that I need to process: assemble genome from PacBio HiFi reads, utilizing multiple CPU threads for speed"
wtdbg2,wtdbg2_02,wtdbg2_02_09,informal,"Hey, can you help me assemble genome from PacBio HiFi reads?"
wtdbg2,wtdbg2_02,wtdbg2_02_10,alternative,Perform: assemble genome from PacBio HiFi reads
wtdbg2,wtdbg2_03,wtdbg2_03_01,original,assemble bacterial genome from PacBio CLR reads
wtdbg2,wtdbg2_03,wtdbg2_03_02,beginner,How do I assemble bacterial genome from PacBio CLR reads?
wtdbg2,wtdbg2_03,wtdbg2_03_03,student,I need to assemble bacterial genome from PacBio CLR reads
wtdbg2,wtdbg2_03,wtdbg2_03_04,polite,Please assemble bacterial genome from PacBio CLR reads
wtdbg2,wtdbg2_03,wtdbg2_03_05,sysadmin,Use wtdbg2 to assemble bacterial genome from PacBio CLR reads
wtdbg2,wtdbg2_03,wtdbg2_03_06,goal_oriented,I want to assemble bacterial genome from PacBio CLR reads
wtdbg2,wtdbg2_03,wtdbg2_03_07,expert,assemble bacterial genome PacBio CLR reads
wtdbg2,wtdbg2_03,wtdbg2_03_08,detailed,"I have data that I need to process: assemble bacterial genome from PacBio CLR reads, utilizing multiple CPU threads for speed"
wtdbg2,wtdbg2_03,wtdbg2_03_09,informal,"Hey, can you help me assemble bacterial genome from PacBio CLR reads?"
wtdbg2,wtdbg2_03,wtdbg2_03_10,alternative,Perform: assemble bacterial genome from PacBio CLR reads
wtdbg2,wtdbg2_04,wtdbg2_04_01,original,assemble genome from Oxford Nanopore reads in quiet mode
wtdbg2,wtdbg2_04,wtdbg2_04_02,beginner,How do I assemble genome from Oxford Nanopore reads in quiet mode?
wtdbg2,wtdbg2_04,wtdbg2_04_03,student,I need to assemble genome from Oxford Nanopore reads in quiet mode
wtdbg2,wtdbg2_04,wtdbg2_04_04,polite,Please assemble genome from Oxford Nanopore reads in quiet mode
wtdbg2,wtdbg2_04,wtdbg2_04_05,sysadmin,Use wtdbg2 to assemble genome from Oxford Nanopore reads in quiet mode
wtdbg2,wtdbg2_04,wtdbg2_04_06,goal_oriented,I want to assemble genome from Oxford Nanopore reads in quiet mode
wtdbg2,wtdbg2_04,wtdbg2_04_07,expert,assemble genome Oxford Nanopore reads quiet mode
wtdbg2,wtdbg2_04,wtdbg2_04_08,detailed,"I have data that I need to process: assemble genome from Oxford Nanopore reads in quiet mode, utilizing multiple CPU threads for speed"
wtdbg2,wtdbg2_04,wtdbg2_04_09,informal,"Hey, can you help me assemble genome from Oxford Nanopore reads in quiet mode?"
wtdbg2,wtdbg2_04,wtdbg2_04_10,alternative,Perform: assemble genome from Oxford Nanopore reads in quiet mode
wtdbg2,wtdbg2_05,wtdbg2_05_01,original,assemble genome from PacBio HiFi reads with default parameters
wtdbg2,wtdbg2_05,wtdbg2_05_02,beginner,How do I assemble genome from PacBio HiFi reads with default parameters?
wtdbg2,wtdbg2_05,wtdbg2_05_03,student,I need to assemble genome from PacBio HiFi reads with default parameters
wtdbg2,wtdbg2_05,wtdbg2_05_04,polite,Please assemble genome from PacBio HiFi reads with default parameters
wtdbg2,wtdbg2_05,wtdbg2_05_05,sysadmin,Use wtdbg2 to assemble genome from PacBio HiFi reads with default parameters
wtdbg2,wtdbg2_05,wtdbg2_05_06,goal_oriented,I want to assemble genome from PacBio HiFi reads with default parameters
wtdbg2,wtdbg2_05,wtdbg2_05_07,expert,assemble genome PacBio HiFi reads default parameters
wtdbg2,wtdbg2_05,wtdbg2_05_08,detailed,"I have data that I need to process: assemble genome from PacBio HiFi reads with default parameters, utilizing multiple CPU threads for speed"
wtdbg2,wtdbg2_05,wtdbg2_05_09,informal,"Hey, can you help me assemble genome from PacBio HiFi reads with default parameters?"
wtdbg2,wtdbg2_05,wtdbg2_05_10,alternative,"With default parameters, assemble genome from PacBio HiFi reads"
wtdbg2,wtdbg2_06,wtdbg2_06_01,original,assemble bacterial genome from PacBio CLR reads with verbose output
wtdbg2,wtdbg2_06,wtdbg2_06_02,beginner,How do I assemble bacterial genome from PacBio CLR reads with verbose output?
wtdbg2,wtdbg2_06,wtdbg2_06_03,student,I need to assemble bacterial genome from PacBio CLR reads with verbose output
wtdbg2,wtdbg2_06,wtdbg2_06_04,polite,Please assemble bacterial genome from PacBio CLR reads with verbose output
wtdbg2,wtdbg2_06,wtdbg2_06_05,sysadmin,Use wtdbg2 to assemble bacterial genome from PacBio CLR reads with verbose output
wtdbg2,wtdbg2_06,wtdbg2_06_06,goal_oriented,I want to assemble bacterial genome from PacBio CLR reads with verbose output
wtdbg2,wtdbg2_06,wtdbg2_06_07,expert,assemble bacterial genome PacBio CLR reads verbose output
wtdbg2,wtdbg2_06,wtdbg2_06_08,detailed,"I have data that I need to process: assemble bacterial genome from PacBio CLR reads with verbose output, utilizing multiple CPU threads for speed"
wtdbg2,wtdbg2_06,wtdbg2_06_09,informal,"Hey, can you help me assemble bacterial genome from PacBio CLR reads with verbose output?"
wtdbg2,wtdbg2_06,wtdbg2_06_10,alternative,"With verbose output, assemble bacterial genome from PacBio CLR reads"
wtdbg2,wtdbg2_07,wtdbg2_07_01,original,assemble genome from Oxford Nanopore reads using multiple threads
wtdbg2,wtdbg2_07,wtdbg2_07_02,beginner,How do I assemble genome from Oxford Nanopore reads using multiple threads?
wtdbg2,wtdbg2_07,wtdbg2_07_03,student,I need to assemble genome from Oxford Nanopore reads using multiple threads
wtdbg2,wtdbg2_07,wtdbg2_07_04,polite,Please assemble genome from Oxford Nanopore reads using multiple threads
wtdbg2,wtdbg2_07,wtdbg2_07_05,sysadmin,Use wtdbg2 to assemble genome from Oxford Nanopore reads using multiple threads
wtdbg2,wtdbg2_07,wtdbg2_07_06,goal_oriented,I want to assemble genome from Oxford Nanopore reads using multiple threads
wtdbg2,wtdbg2_07,wtdbg2_07_07,expert,assemble genome Oxford Nanopore reads multiple threads
wtdbg2,wtdbg2_07,wtdbg2_07_08,detailed,"I have data that I need to process: assemble genome from Oxford Nanopore reads using multiple threads, utilizing multiple CPU threads for speed"
wtdbg2,wtdbg2_07,wtdbg2_07_09,informal,"Hey, can you help me assemble genome from Oxford Nanopore reads using multiple threads?"
wtdbg2,wtdbg2_07,wtdbg2_07_10,alternative,Perform: assemble genome from Oxford Nanopore reads using multiple threads
wtdbg2,wtdbg2_08,wtdbg2_08_01,original,assemble genome from PacBio HiFi reads and write output to a file
wtdbg2,wtdbg2_08,wtdbg2_08_02,beginner,How do I assemble genome from PacBio HiFi reads and write output to a file?
wtdbg2,wtdbg2_08,wtdbg2_08_03,student,I need to assemble genome from PacBio HiFi reads and write output to a file
wtdbg2,wtdbg2_08,wtdbg2_08_04,polite,Please assemble genome from PacBio HiFi reads and write output to a file
wtdbg2,wtdbg2_08,wtdbg2_08_05,sysadmin,Use wtdbg2 to assemble genome from PacBio HiFi reads and write output to a file
wtdbg2,wtdbg2_08,wtdbg2_08_06,goal_oriented,I want to assemble genome from PacBio HiFi reads and write output to a file
wtdbg2,wtdbg2_08,wtdbg2_08_07,expert,assemble genome PacBio HiFi reads write output file
wtdbg2,wtdbg2_08,wtdbg2_08_08,detailed,"I have data that I need to process: assemble genome from PacBio HiFi reads and write output to a file, utilizing multiple CPU threads for speed, saving the result to a specified output file"
wtdbg2,wtdbg2_08,wtdbg2_08_09,informal,"Hey, can you help me assemble genome from PacBio HiFi reads and write output to a file?"
wtdbg2,wtdbg2_08,wtdbg2_08_10,alternative,Write output to a file after assemble genome from PacBio HiFi reads
wtdbg2,wtdbg2_09,wtdbg2_09_01,original,assemble bacterial genome from PacBio CLR reads in quiet mode
wtdbg2,wtdbg2_09,wtdbg2_09_02,beginner,How do I assemble bacterial genome from PacBio CLR reads in quiet mode?
wtdbg2,wtdbg2_09,wtdbg2_09_03,student,I need to assemble bacterial genome from PacBio CLR reads in quiet mode
wtdbg2,wtdbg2_09,wtdbg2_09_04,polite,Please assemble bacterial genome from PacBio CLR reads in quiet mode
wtdbg2,wtdbg2_09,wtdbg2_09_05,sysadmin,Use wtdbg2 to assemble bacterial genome from PacBio CLR reads in quiet mode
wtdbg2,wtdbg2_09,wtdbg2_09_06,goal_oriented,I want to assemble bacterial genome from PacBio CLR reads in quiet mode
wtdbg2,wtdbg2_09,wtdbg2_09_07,expert,assemble bacterial genome PacBio CLR reads quiet mode
wtdbg2,wtdbg2_09,wtdbg2_09_08,detailed,"I have data that I need to process: assemble bacterial genome from PacBio CLR reads in quiet mode, utilizing multiple CPU threads for speed"
wtdbg2,wtdbg2_09,wtdbg2_09_09,informal,"Hey, can you help me assemble bacterial genome from PacBio CLR reads in quiet mode?"
wtdbg2,wtdbg2_09,wtdbg2_09_10,alternative,Perform: assemble bacterial genome from PacBio CLR reads in quiet mode
wtdbg2,wtdbg2_10,wtdbg2_10_01,original,assemble genome from Oxford Nanopore reads with default parameters
wtdbg2,wtdbg2_10,wtdbg2_10_02,beginner,How do I assemble genome from Oxford Nanopore reads with default parameters?
wtdbg2,wtdbg2_10,wtdbg2_10_03,student,I need to assemble genome from Oxford Nanopore reads with default parameters
wtdbg2,wtdbg2_10,wtdbg2_10_04,polite,Please assemble genome from Oxford Nanopore reads with default parameters
wtdbg2,wtdbg2_10,wtdbg2_10_05,sysadmin,Use wtdbg2 to assemble genome from Oxford Nanopore reads with default parameters
wtdbg2,wtdbg2_10,wtdbg2_10_06,goal_oriented,I want to assemble genome from Oxford Nanopore reads with default parameters
wtdbg2,wtdbg2_10,wtdbg2_10_07,expert,assemble genome Oxford Nanopore reads default parameters
wtdbg2,wtdbg2_10,wtdbg2_10_08,detailed,"I have data that I need to process: assemble genome from Oxford Nanopore reads with default parameters, utilizing multiple CPU threads for speed"
wtdbg2,wtdbg2_10,wtdbg2_10_09,informal,"Hey, can you help me assemble genome from Oxford Nanopore reads with default parameters?"
wtdbg2,wtdbg2_10,wtdbg2_10_10,alternative,"With default parameters, assemble genome from Oxford Nanopore reads"