oxo-call 0.11.0

Model-intelligent orchestration for CLI bioinformatics — call any tool with LLM intelligence
Documentation 
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site_name: "oxo-call"
site_url: https://traitome.github.io/oxo-call/documentation/
site_description: "oxo-call Documentation — Model-intelligent orchestration for CLI bioinformatics"
repo_url: https://github.com/Traitome/oxo-call
repo_name: Traitome/oxo-call
edit_uri: edit/main/docs/guide/src/

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nav:
  - Home: index.md
  - Getting Started:
      - Installation: tutorials/installation.md
      - License Setup: tutorials/license.md
      - Configuration: tutorials/configuration.md
      - Quick Start: tutorials/quickstart.md
  - Tutorials:
      - Your First Command: tutorials/first-command.md
      - SAM/BAM Processing: tutorials/bam-workflow.md
      - RNA-seq Walkthrough: tutorials/rnaseq-walkthrough.md
      - Workflow Builder: tutorials/workflow-builder.md
  - How-to Guides:
      - Add Documentation for a Tool: how-to/add-tool-docs.md
      - Switch LLM Provider: how-to/change-llm-provider.md
      - Create a Custom Skill: how-to/create-custom-skill.md
      - Build a Production Pipeline: how-to/build-pipeline.md
  - Command Reference:
      - run: commands/run.md
      - dry-run: commands/dry-run.md
      - docs: commands/docs.md
      - server: commands/server.md
      - workflow: commands/workflow.md
      - job: commands/job.md
      - config: commands/config.md
      - history: commands/history.md
      - skill: commands/skill.md
      - license: commands/license.md
      - completion: commands/completion.md
  - Architecture & Design:
      - System Architecture: reference/architecture.md
      - Documentation System: reference/documentation-system.md
      - Skill System: reference/skill-system.md
      - MCP Skill Provider: reference/mcp-skill-provider.md
      - LLM Integration: reference/llm-integration.md
      - Workflow Engine: reference/workflow-engine.md
      - License System: reference/license-system.md
      - Security Considerations: reference/security-considerations.md
  - Development:
      - Contributing: development/contributing.md
      - Evaluation Reports: development/evaluation-reports.md