oxbow 0.5.2

Read conventional genomic file formats as data frames and more via Apache Arrow.
Documentation 
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79

# THIS FILE IS AUTOMATICALLY GENERATED BY CARGO
#
# When uploading crates to the registry Cargo will automatically
# "normalize" Cargo.toml files for maximal compatibility
# with all versions of Cargo and also rewrite `path` dependencies
# to registry (e.g., crates.io) dependencies.
#
# If you are reading this file be aware that the original Cargo.toml
# will likely look very different (and much more reasonable).
# See Cargo.toml.orig for the original contents.

[package]
edition = "2021"
name = "oxbow"
version = "0.5.2"
build = false
autolib = false
autobins = false
autoexamples = false
autotests = false
autobenches = false
description = "Read conventional genomic file formats as data frames and more via Apache Arrow."
homepage = "https://oxbow.readthedocs.io"
readme = "README.md"
keywords = [
    "genomics",
    "ngs",
    "bioinformatics",
    "dataframe",
    "arrow",
]
categories = [
    "data-structures",
    "encoding",
    "science::bioinformatics::genomics",
    "science::bioinformatics::sequence-analysis",
    "parsing",
]
license = "MIT OR Apache-2.0"
repository = "https://github.com/abdenlab/oxbow"

[lib]
name = "oxbow"
path = "src/lib.rs"

[dependencies.arrow]
version = "57"

[dependencies.arrow-array]
version = "57"

[dependencies.arrow-schema]
version = "57"

[dependencies.bigtools]
version = "0.5.6"
features = ["read"]

[dependencies.indexmap]
version = "2.12.1"

[dependencies.noodles]
version = "0.102"
features = [
    "bam",
    "bcf",
    "bed",
    "bgzf",
    "core",
    "csi",
    "cram",
    "fasta",
    "fastq",
    "gff",
    "gtf",
    "sam",
    "tabix",
    "vcf",
]