orphos-cli 0.1.0

Command-line interface for Orphos, a tool for finding protein-coding genes in microbial genomes.
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[package]
name = "orphos-cli"
version = "0.1.0"
edition = "2024"
description = "Command-line interface for Orphos, a tool for finding protein-coding genes in microbial genomes."
license = "GPL-3.0-or-later"
repository = "https://github.com/FullHuman/orphos"
documentation = "https://docs.rs/orphos-cli"
readme = "README.md"
categories = ["science::bioinformatics", "command-line-utilities"]
keywords = [
    "orphos",
    "bioinformatics",
    "genomics",
    "prodigal"
]
exclude = ["tests/data/**"]

[package.metadata.docs.rs]
all-features = true

[dependencies]
clap = { version = "4.5.41", features = ["derive"] }
orphos-core = { version = "0.1.0", path = "../orphos-core" }

[dev-dependencies]
tempfile = "3.8"
assert_cmd = "2.0"
predicates = "3.0"
similar = "2.4"
serde = { version = "1.0", features = ["derive"] }
serde_json = "1.0"
criterion = { version = "0.5", features = ["html_reports"] }
insta = { version = "1.39", features = ["glob"] }
sha2 = "0.10"

[[bin]]
name = "orphos"
path = "src/main.rs"

[[bench]]
name = "prodigal_benchmarks"
harness = false