orphos-cli 0.2.0

Command-line interface for Orphos, a tool for finding protein-coding genes in microbial genomes.
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# THIS FILE IS AUTOMATICALLY GENERATED BY CARGO
#
# When uploading crates to the registry Cargo will automatically
# "normalize" Cargo.toml files for maximal compatibility
# with all versions of Cargo and also rewrite `path` dependencies
# to registry (e.g., crates.io) dependencies.
#
# If you are reading this file be aware that the original Cargo.toml
# will likely look very different (and much more reasonable).
# See Cargo.toml.orig for the original contents.

[package]
edition = "2024"
name = "orphos-cli"
version = "0.2.0"
build = false
exclude = ["tests/data/**"]
autolib = false
autobins = false
autoexamples = false
autotests = false
autobenches = false
description = "Command-line interface for Orphos, a tool for finding protein-coding genes in microbial genomes."
documentation = "https://docs.rs/orphos-cli"
readme = "README.md"
keywords = [
    "orphos",
    "bioinformatics",
    "genomics",
    "prodigal",
]
categories = [
    "science::bioinformatics",
    "command-line-utilities",
]
license = "GPL-3.0-or-later"
repository = "https://github.com/FullHuman/orphos"
resolver = "2"

[package.metadata.docs.rs]
all-features = true

[[bin]]
name = "orphos"
path = "src/main.rs"

[[test]]
name = "format_bed"
path = "tests/format_bed.rs"

[[test]]
name = "format_gbk"
path = "tests/format_gbk.rs"

[[test]]
name = "format_gff"
path = "tests/format_gff.rs"

[[test]]
name = "golden_outputs"
path = "tests/golden_outputs.rs"

[[test]]
name = "meta_genomes_equivalence"
path = "tests/meta_genomes_equivalence.rs"

[[test]]
name = "single_genomes_equivalence"
path = "tests/single_genomes_equivalence.rs"

[[bench]]
name = "criterion_config"
path = "benches/criterion_config.rs"

[[bench]]
name = "prodigal_benchmarks"
path = "benches/prodigal_benchmarks.rs"
harness = false

[dependencies.clap]
version = "4.5.41"
features = ["derive"]

[dependencies.orphos-core]
version = "0.2.0"

[dev-dependencies.assert_cmd]
version = "2.0"

[dev-dependencies.criterion]
version = "0.5"
features = ["html_reports"]

[dev-dependencies.insta]
version = "1.39"
features = ["glob"]

[dev-dependencies.predicates]
version = "3.0"

[dev-dependencies.serde]
version = "1.0"
features = ["derive"]

[dev-dependencies.serde_json]
version = "1.0"

[dev-dependencies.sha2]
version = "0.10"

[dev-dependencies.similar]
version = "2.4"

[dev-dependencies.tempfile]
version = "3.8"