orphos-cli 0.1.0

Command-line interface for Orphos, a tool for finding protein-coding genes in microbial genomes.
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[[bench]]
name = "criterion_config"
path = "benches/criterion_config.rs"

[[bench]]
harness = false
name = "prodigal_benchmarks"
path = "benches/prodigal_benchmarks.rs"

[[bin]]
name = "orphos"
path = "src/main.rs"

[dependencies.clap]
features = ["derive"]
version = "4.5.41"

[dependencies.orphos-core]
version = "0.1.0"

[dev-dependencies.assert_cmd]
version = "2.0"

[dev-dependencies.criterion]
features = ["html_reports"]
version = "0.5"

[dev-dependencies.insta]
features = ["glob"]
version = "1.39"

[dev-dependencies.predicates]
version = "3.0"

[dev-dependencies.serde]
features = ["derive"]
version = "1.0"

[dev-dependencies.serde_json]
version = "1.0"

[dev-dependencies.sha2]
version = "0.10"

[dev-dependencies.similar]
version = "2.4"

[dev-dependencies.tempfile]
version = "3.8"

[package]
autobenches = false
autobins = false
autoexamples = false
autolib = false
autotests = false
build = false
categories = ["science::bioinformatics", "command-line-utilities"]
description = "Command-line interface for Orphos, a tool for finding protein-coding genes in microbial genomes."
documentation = "https://docs.rs/orphos-cli"
edition = "2024"
exclude = ["tests/data/**"]
keywords = ["orphos", "bioinformatics", "genomics", "prodigal"]
license = "GPL-3.0-or-later"
name = "orphos-cli"
readme = "README.md"
repository = "https://github.com/FullHuman/orphos"
resolver = "2"
version = "0.1.0"

[package.metadata.docs.rs]
all-features = true

[[test]]
name = "format_gbk"
path = "tests/format_gbk.rs"

[[test]]
name = "format_gff"
path = "tests/format_gff.rs"

[[test]]
name = "golden_outputs"
path = "tests/golden_outputs.rs"

[[test]]
name = "single_genomes_equivalence"
path = "tests/single_genomes_equivalence.rs"