# Attribution
Bruker `.d` bundles re-distributed (for research / open-parser
development) from public ProteomeXchange repositories. Every dataset
listed below retains its original licence - PRIDE's default is
CC-BY 4.0, but per-dataset terms always win. If you use any of
these data, please cite the original submitter and the ProteomeXchange
accession; links below resolve to the project landing page.
Manifest generated: 2026-04-22T00:10:25.830284+00:00
Bundles: 19
Total size: 17.01 GB
| [PXD021593](https://www.ebi.ac.uk/pride/archive/projects/PXD021593) | PRIDE | maXis | ? | 32 | A proteomic-informed view of the changes induced by loss of cellular adherence: the example of mouse macrophages |
| [PXD009101](https://www.ebi.ac.uk/pride/archive/projects/PXD009101) | PRIDE | solariX | ? | 7 | GAGfinder: glycosaminoglycan MS/MS fragment peak finding and elemental composition assignment |
| [PXD005859](https://www.ebi.ac.uk/pride/archive/projects/PXD005859) | PRIDE | amaZon Speed ETD | ? | 364 | Glycoproteomics of Flagellin C9LY14 from Selenomonas sputigena |
| [PXD030992](https://www.ebi.ac.uk/pride/archive/projects/PXD030992) | PRIDE | timsTOF Pro | ? | 89 | TGFB1 induced S100 family protein expression is associated with epithelial to mesenchymal transition states and poor sur |
| [PXD025576](https://www.ebi.ac.uk/pride/archive/projects/PXD025576) | PRIDE | timsTOF Pro | DIA/diaPASEF | 1735 | Characterizing the role of OCIAD1 in the proteolytic processing of holocytochrome c1 and CIII2 assembly |
| [PXD031833](https://www.ebi.ac.uk/pride/archive/projects/PXD031833) | PRIDE | timsTOF Pro | DIA/diaPASEF | 162 | TTYH family members form tetrameric complexes at the cell membrane |
| [PXD027359](https://www.ebi.ac.uk/pride/archive/projects/PXD027359) | PRIDE | timsTOF Pro | DIA/diaPASEF | 743 | AlphaTims: Indexing unprocessed trapped ion mobility spectrometry - time of flight data for fast and easy accession and |
| [PXD034557](https://www.ebi.ac.uk/pride/archive/projects/PXD034557) | PRIDE | timsTOF pro 2 | DIA/diaPASEF | 1523 | Comparative Proteomic Profiling of Variants SARS-CoV-2 Virus-Like-Particles (VLPs) Incubated Cells |
| [PXD006287](https://www.ebi.ac.uk/pride/archive/projects/PXD006287) | PRIDE | Bruker Daltonics amaZon series | ? | 63 | In culture cross-linking of bacterial cells reveals large scale dynamic protein-protein interactions at the peptide leve |
| [PXD018980](https://www.ebi.ac.uk/pride/archive/projects/PXD018980) | PRIDE | maXis | ? | 615 | Characterisation of South American camelid fibres by proteomics |
| [PXD036417](https://www.ebi.ac.uk/pride/archive/projects/PXD036417) | PRIDE | solariX | ? | 92 | Counterintuitive structural and functional effects due to naturally-occurring mutations targeting the active site of the |
| [PXD022216](https://www.ebi.ac.uk/pride/archive/projects/PXD022216) | PRIDE | timsTOF Pro | DIA/diaPASEF | 3959 | The Proteome Landscape of Chronic Lymphocytic Leukemia |
| [PXD030327](https://www.ebi.ac.uk/pride/archive/projects/PXD030327) | PRIDE | timsTOF Pro | DIA/diaPASEF | 1696 | Enhanced competition at the nano-bio interface enables comprehensive characterization of protein corona dynamics and dee |
| [PXD018972](https://www.ebi.ac.uk/pride/archive/projects/PXD018972) | PRIDE | amaZon ETD | ? | 64 | Caspr2 interacts with type 1 inositol 1,4,5-trisphosphate receptor in the developing cerebellum and regulates Purkinje c |
| [PXD038283](https://www.ebi.ac.uk/pride/archive/projects/PXD038283) | PRIDE | Bruker Daltonics solarix series | ? | 30 | Robust high throughput proteomics identification and deami-dation quantitation of extinct species up to Pleistocene with |
| [PXD001592](https://www.ebi.ac.uk/pride/archive/projects/PXD001592) | PRIDE | Bruker Daltonics instrument model | ? | 3369 | The impact II, a very high resolution quadrupole time-of-flight instrument for deep shotgun proteomics |
| [PXD035147](https://www.ebi.ac.uk/pride/archive/projects/PXD035147) | PRIDE | autoflex | ? | 235 | Integrated proteome and malonylome analyses reveal the potential meaning of TLN1 and ACTB in end-stage renal disease |
| [PXD035173](https://www.ebi.ac.uk/pride/archive/projects/PXD035173) | PRIDE | timsTOF Pro | DIA/diaPASEF | 2225 | Proteomic profiling of carotid atherosclerotic plaques and adjacent intact arterial segments |
## Per-bundle detail
### PXD021593 - F031470HD.d.zip
- Title: A proteomic-informed view of the changes induced by loss of cellular adherence: the example of mouse macrophages
- Organisms: Mus musculus (mouse)
- Publication date: 2021-09-09
- Project instruments: maXis, TripleTOF 5600, Synapt MS
- Reported instrument: None
- Acquisition software: None
- Schema: None None
- Acquisition mode: None
- Size: 32.3 MB
- Source URL: https://ftp.pride.ebi.ac.uk/pride/data/archive/2021/09/PXD021593/F031470HD.d.zip
- Licence (presumed): CC-BY-4.0 (PRIDE default)
- Attribution string: PRIDE PXD021593: A proteomic-informed view of the changes induced by loss of cellular adherence: the example of mouse macrophages
### PXD009101 - 2083-_EDD.d.zip
- Title: GAGfinder: glycosaminoglycan MS/MS fragment peak finding and elemental composition assignment
- Organisms: Homo sapiens (human)
- Publication date: 2018-04-09
- Project instruments: solariX
- Reported instrument: None
- Acquisition software: None
- Schema: None None
- Acquisition mode: None
- Size: 6.8 MB
- Source URL: https://ftp.pride.ebi.ac.uk/pride/data/archive/2018/04/PXD009101/2083-_EDD.d.zip
- Licence (presumed): CC-BY-4.0 (PRIDE default)
- Attribution string: PRIDE PXD009101: GAGfinder: glycosaminoglycan MS/MS fragment peak finding and elemental composition assignment
### PXD005859 - SspFlag2_GC3_01_10982.d.zip
- Title: Glycoproteomics of Flagellin C9LY14 from Selenomonas sputigena
- Organisms: Selenomonas sputigena atcc 35185, Escherichia coli
- Publication date: 2018-01-24
- Project instruments: amaZon Speed ETD
- Reported instrument: None
- Acquisition software: None
- Schema: None None
- Acquisition mode: None
- Size: 364.3 MB
- Source URL: https://ftp.pride.ebi.ac.uk/pride/data/archive/2018/01/PXD005859/SspFlag2_GC3_01_10982.d.zip
- Licence (presumed): CC-BY-4.0 (PRIDE default)
- Attribution string: PRIDE PXD005859: Glycoproteomics of Flagellin C9LY14 from Selenomonas sputigena
### PXD030992 - P3945_10_1_1_4638.d.zip
- Title: TGFB1 induced S100 family protein expression is associated with epithelial to mesenchymal transition states and poor survival in pancreatic cancer
- Organisms: Mus musculus (mouse)
- Publication date: 2023-02-24
- Project instruments: timsTOF Pro
- Reported instrument: None
- Acquisition software: None
- Schema: None None
- Acquisition mode: None
- Size: 88.9 MB
- Source URL: https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/02/PXD030992/P3945_10_1_1_4638.d.zip
- Licence (presumed): CC-BY-4.0 (PRIDE default)
- Attribution string: PRIDE PXD030992: TGFB1 induced S100 family protein expression is associated with epithelial to mesenchymal transition states and poor survival in pancreatic cancer
### PXD025576 - 191118_DIAMAX_G10_Slot1-62_1_459.d.zip
- Title: Characterizing the role of OCIAD1 in the proteolytic processing of holocytochrome c1 and CIII2 assembly
- Organisms: Homo sapiens (human)
- Publication date: 2021-05-18
- Project instruments: timsTOF Pro
- Reported instrument: timsTOF Pro
- Acquisition software: Bruker otofControl 6.0.115.261-15059-vc141
- Schema: TDF 3.1
- Acquisition mode: DIA/diaPASEF
- Size: 1735.3 MB
- Source URL: https://ftp.pride.ebi.ac.uk/pride/data/archive/2021/05/PXD025576/191118_DIAMAX_G10_Slot1-62_1_459.d.zip
- Licence (presumed): CC-BY-4.0 (PRIDE default)
- Attribution string: PRIDE PXD025576: Characterizing the role of OCIAD1 in the proteolytic processing of holocytochrome c1 and CIII2 assembly
### PXD031833 - mTTYH1-D_coi-N2-P-200-20C_U-T_3366.d.zip
- Title: TTYH family members form tetrameric complexes at the cell membrane
- Organisms: Mus musculus (mouse)
- Publication date: 2022-08-31
- Project instruments: timsTOF Pro, Bruker Daltonics solarix series
- Reported instrument: timsTOF Pro
- Acquisition software: Bruker otofControl 6.2.201.416-16523-vc141
- Schema: TDF 3.3
- Acquisition mode: DIA/diaPASEF
- Size: 161.7 MB
- Source URL: https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/08/PXD031833/mTTYH1-D_coi-N2-P-200-20C_U-T_3366.d.zip
- Licence (presumed): CC-BY-4.0 (PRIDE default)
- Attribution string: PRIDE PXD031833: TTYH family members form tetrameric complexes at the cell membrane
### PXD027359 - 20201207_tims03_Evo03_PS_SA_HeLa_200ng_EvoSep_prot_DDA_21min_8cm_S1-C10_1_22476.d.zip
- Title: AlphaTims: Indexing unprocessed trapped ion mobility spectrometry - time of flight data for fast and easy accession and visualization
- Organisms: Homo sapiens (human)
- Publication date: 2021-07-30
- Project instruments: timsTOF Pro
- Reported instrument: timsTOF Pro
- Acquisition software: timsTOF 2.0.40
- Schema: TDF 3.5
- Acquisition mode: DIA/diaPASEF
- Size: 743.5 MB
- Source URL: https://ftp.pride.ebi.ac.uk/pride/data/archive/2021/07/PXD027359/20201207_tims03_Evo03_PS_SA_HeLa_200ng_EvoSep_prot_DDA_21min_8cm_S1-C10_1_22476.d.zip
- Licence (presumed): CC-BY-4.0 (PRIDE default)
- Attribution string: PRIDE PXD027359: AlphaTims: Indexing unprocessed trapped ion mobility spectrometry - time of flight data for fast and easy accession and visualization
### PXD034557 - C1DIA_Slot1-1_1_3174.d.zip
- Title: Comparative Proteomic Profiling of Variants SARS-CoV-2 Virus-Like-Particles (VLPs) Incubated Cells
- Organisms: Homo sapiens (human)
- Publication date: 2023-04-15
- Project instruments: timsTOF Pro 2
- Reported instrument: timsTOF pro 2
- Acquisition software: timsTOF 3.0.22
- Schema: TDF 3.6
- Acquisition mode: DIA/diaPASEF
- Size: 1523.4 MB
- Source URL: https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD034557/C1DIA_Slot1-1_1_3174.d.zip
- Licence (presumed): CC-BY-4.0 (PRIDE default)
- Attribution string: PRIDE PXD034557: Comparative Proteomic Profiling of Variants SARS-CoV-2 Virus-Like-Particles (VLPs) Incubated Cells
### PXD006287 - XL2349_fr9_B2_01_1701.d.zip
- Title: In culture cross-linking of bacterial cells reveals large scale dynamic protein-protein interactions at the peptide level.
- Organisms: Bacillus subtilis subsp. subtilis str. 168
- Publication date: 2017-05-23
- Project instruments: Bruker Daltonics amaZon series
- Reported instrument: None
- Acquisition software: None
- Schema: None None
- Acquisition mode: None
- Size: 62.5 MB
- Source URL: https://ftp.pride.ebi.ac.uk/pride/data/archive/2017/05/PXD006287/XL2349_fr9_B2_01_1701.d.zip
- Licence (presumed): CC-BY-4.0 (PRIDE default)
- Attribution string: PRIDE PXD006287: In culture cross-linking of bacterial cells reveals large scale dynamic protein-protein interactions at the peptide level.
### PXD009101 - 2064-_NETD.d.zip
- Title: GAGfinder: glycosaminoglycan MS/MS fragment peak finding and elemental composition assignment
- Organisms: Homo sapiens (human)
- Publication date: 2018-04-09
- Project instruments: solariX
- Reported instrument: None
- Acquisition software: None
- Schema: None None
- Acquisition mode: None
- Size: 6.9 MB
- Source URL: https://ftp.pride.ebi.ac.uk/pride/data/archive/2018/04/PXD009101/2064-_NETD.d.zip
- Licence (presumed): CC-BY-4.0 (PRIDE default)
- Attribution string: PRIDE PXD009101: GAGfinder: glycosaminoglycan MS/MS fragment peak finding and elemental composition assignment
### PXD018980 - 20170224_122_Gua_ZB4359_BB2_01_383.d.zip
- Title: Characterisation of South American camelid fibres by proteomics
- Organisms: Camelidae
- Publication date: 2020-11-09
- Project instruments: maXis
- Reported instrument: None
- Acquisition software: None
- Schema: None None
- Acquisition mode: None
- Size: 614.7 MB
- Source URL: https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/11/PXD018980/20170224_122_Gua_ZB4359_BB2_01_383.d.zip
- Licence (presumed): CC-BY-4.0 (PRIDE default)
- Attribution string: PRIDE PXD018980: Characterisation of South American camelid fibres by proteomics
### PXD036417 - NQO1-F107C_coi-N2-P_200-0C_3996.d.zip
- Title: Counterintuitive structural and functional effects due to naturally-occurring mutations targeting the active site of the disease-associated NQO1 enzyme
- Organisms: Homo sapiens (human)
- Publication date: 2022-11-23
- Project instruments: solariX
- Reported instrument: None
- Acquisition software: None
- Schema: None None
- Acquisition mode: None
- Size: 91.7 MB
- Source URL: https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/11/PXD036417/NQO1-F107C_coi-N2-P_200-0C_3996.d.zip
- Licence (presumed): CC-BY-4.0 (PRIDE default)
- Attribution string: PRIDE PXD036417: Counterintuitive structural and functional effects due to naturally-occurring mutations targeting the active site of the disease-associated NQO1 enzyme
### PXD022216 - fmeierab_T190525_CLL_diaPASEF_02_1977.d.zip
- Title: The Proteome Landscape of Chronic Lymphocytic Leukemia
- Organisms: Homo sapiens (human)
- Publication date: 2021-09-27
- Project instruments: timsTOF Pro
- Reported instrument: timsTOF Pro
- Acquisition software: Bruker otofControl 5.1.81.714-13047-vc110
- Schema: TDF 3.1
- Acquisition mode: DIA/diaPASEF
- Size: 3958.8 MB
- Source URL: https://ftp.pride.ebi.ac.uk/pride/data/archive/2021/09/PXD022216/fmeierab_T190525_CLL_diaPASEF_02_1977.d.zip
- Licence (presumed): CC-BY-4.0 (PRIDE default)
- Attribution string: PRIDE PXD022216: The Proteome Landscape of Chronic Lymphocytic Leukemia
### PXD030327 - EXP21053_2021ms0297X10_A_BB2_1_1884.d.zip
- Title: Enhanced competition at the nano-bio interface enables comprehensive characterization of protein corona dynamics and deep coverage of proteomes
- Organisms: Homo sapiens (human)
- Publication date: 2022-09-02
- Project instruments: timsTOF Pro 2
- Reported instrument: timsTOF Pro
- Acquisition software: timsTOF 2.0.53.0
- Schema: TDF 3.5
- Acquisition mode: DIA/diaPASEF
- Size: 1696.2 MB
- Source URL: https://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD030327/EXP21053_2021ms0297X10_A_BB2_1_1884.d.zip
- Licence (presumed): CC-BY-4.0 (PRIDE default)
- Attribution string: PRIDE PXD030327: Enhanced competition at the nano-bio interface enables comprehensive characterization of protein corona dynamics and deep coverage of proteomes
### PXD018972 - LA_CS-F_24May16_BE4_01_30183.d.zip
- Title: Caspr2 interacts with type 1 inositol 1,4,5-trisphosphate receptor in the developing cerebellum and regulates Purkinje cell morphology
- Organisms: Mus musculus (mouse)
- Publication date: 2020-07-13
- Project instruments: amaZon ETD
- Reported instrument: None
- Acquisition software: None
- Schema: None None
- Acquisition mode: None
- Size: 64.2 MB
- Source URL: https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/07/PXD018972/LA_CS-F_24May16_BE4_01_30183.d.zip
- Licence (presumed): CC-BY-4.0 (PRIDE default)
- Attribution string: PRIDE PXD018972: Caspr2 interacts with type 1 inositol 1,4,5-trisphosphate receptor in the developing cerebellum and regulates Purkinje cell morphology
### PXD038283 - Ca1.d.zip
- Title: Robust high throughput proteomics identification and deami-dation quantitation of extinct species up to Pleistocene with Ultrahigh Resolution MALDI-FTICR Mass Spectrometry
- Organisms: Homo sapiens (human), Bos taurus (bovine), Rhinoceros, Castor fiber (eurasian beaver), Cervus, Equus caballus (horse)
- Publication date: 2023-04-28
- Project instruments: Bruker Daltonics solarix series, Q Exactive Plus
- Reported instrument: None
- Acquisition software: None
- Schema: None None
- Acquisition mode: None
- Size: 29.8 MB
- Source URL: https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD038283/Ca1.d.zip
- Licence (presumed): CC-BY-4.0 (PRIDE default)
- Attribution string: PRIDE PXD038283: Robust high throughput proteomics identification and deami-dation quantitation of extinct species up to Pleistocene with Ultrahigh Resolution MALDI-FTICR Mass Spectrometry
### PXD001592 - 025pmolUPS2_500ngY_90min1Hz1pr_BC1_01_338.d.zip
- Title: The impact II, a very high resolution quadrupole time-of-flight instrument for deep shotgun proteomics
- Organisms: Homo sapiens (human), Mus musculus (mouse), Saccharomyces cerevisiae (baker's yeast)
- Publication date: 2015-05-26
- Project instruments: Bruker Daltonics instrument model
- Reported instrument: None
- Acquisition software: None
- Schema: None None
- Acquisition mode: None
- Size: 3368.9 MB
- Source URL: https://ftp.pride.ebi.ac.uk/pride/data/archive/2015/05/PXD001592/025pmolUPS2_500ngY_90min1Hz1pr_BC1_01_338.d.zip
- Licence (presumed): CC-BY-4.0 (PRIDE default)
- Attribution string: PRIDE PXD001592: The impact II, a very high resolution quadrupole time-of-flight instrument for deep shotgun proteomics
### PXD035147 - JD019LPMa_HC_1_Slot1-45_1_10163.d.zip
- Title: Integrated proteome and malonylome analyses reveal the potential meaning of TLN1 and ACTB in end-stage renal disease
- Organisms: Homo sapiens (human)
- Publication date: 2023-10-24
- Project instruments: autoflex
- Reported instrument: None
- Acquisition software: None
- Schema: None None
- Acquisition mode: None
- Size: 235.3 MB
- Source URL: https://ftp.pride.ebi.ac.uk/pride/data/archive/2023/10/PXD035147/JD019LPMa_HC_1_Slot1-45_1_10163.d.zip
- Licence (presumed): CC-BY-4.0 (PRIDE default)
- Attribution string: PRIDE PXD035147: Integrated proteome and malonylome analyses reveal the potential meaning of TLN1 and ACTB in end-stage renal disease
### PXD035173 - 62_Slot1-54_1_2674.d.zip
- Title: Proteomic profiling of carotid atherosclerotic plaques and adjacent intact arterial segments
- Organisms: Homo sapiens (human)
- Publication date: 2025-06-05
- Project instruments: timsTOF Pro
- Reported instrument: timsTOF Pro
- Acquisition software: timsTOF 2.0.18.0
- Schema: TDF 3.5
- Acquisition mode: DIA/diaPASEF
- Size: 2225.2 MB
- Source URL: https://ftp.pride.ebi.ac.uk/pride/data/archive/2025/06/PXD035173/62_Slot1-54_1_2674.d.zip
- Licence (presumed): CC-BY-4.0 (PRIDE default)
- Attribution string: PRIDE PXD035173: Proteomic profiling of carotid atherosclerotic plaques and adjacent intact arterial segments