omicsx 1.0.1

omicsx: SIMD-accelerated sequence alignment and bioinformatics analysis for petabyte-scale genomic data
Documentation 
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name: CI

on:
  push:
    branches: [ main, develop ]
  pull_request:
    branches: [ main, develop ]

env:
  CARGO_TERM_COLOR: always
  RUST_BACKTRACE: 1

jobs:
  test:
    name: Test Suite
    runs-on: ${{ matrix.os }}
    strategy:
      matrix:
        os: [ubuntu-latest, macos-latest, windows-latest]
        rust: [stable, 1.70.0]
    steps:
      - uses: actions/checkout@v4
      - uses: dtolnay/rust-toolchain@master
        with:
          toolchain: ${{ matrix.rust }}
      - uses: Swatinem/rust-cache@v2
      - run: cargo test --lib --verbose

  clippy:
    name: Clippy
    runs-on: ubuntu-latest
    steps:
      - uses: actions/checkout@v4
      - uses: dtolnay/rust-toolchain@stable
        with:
          components: clippy
      - uses: Swatinem/rust-cache@v2
      - run: cargo clippy --release -- -D warnings

  fmt:
    name: Rustfmt
    runs-on: ubuntu-latest
    steps:
      - uses: actions/checkout@v4
      - uses: dtolnay/rust-toolchain@stable
        with:
          components: rustfmt
      - run: cargo fmt -- --check

  docs:
    name: Docs
    runs-on: ubuntu-latest
    steps:
      - uses: actions/checkout@v4
      - uses: dtolnay/rust-toolchain@stable
      - uses: Swatinem/rust-cache@v2
      - run: cargo doc --no-deps --document-private-items
        env:
          RUSTDOCFLAGS: -D warnings

  coverage:
    name: Code Coverage
    runs-on: ubuntu-latest
    steps:
      - uses: actions/checkout@v4
      - uses: dtolnay/rust-toolchain@stable
      - uses: Swatinem/rust-cache@v2
      - uses: taiki-e/install-action@cargo-tarpaulin
      - run: cargo tarpaulin --out Xml --exclude-files tests/* examples/*
      - uses: codecov/codecov-action@v3
        with:
          files: ./cobertura.xml