numeris 0.5.2

Pure-Rust numerical algorithms library — high performance with SIMD support while also supporting no-std for embedded and WASM targets.
Documentation 
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97

use crate::FloatScalar;
use crate::special::{lgamma, gamma_inc};
use super::{ContinuousDistribution, StatsError, quantile_newton, normal_quantile_standard};

/// Chi-squared distribution with k degrees of freedom.
///
/// Special case of Gamma(k/2, 1/2).
///
/// # Example
///
/// ```
/// use numeris::stats::{ChiSquared, ContinuousDistribution};
///
/// let chi2 = ChiSquared::new(3.0_f64).unwrap();
/// assert!((chi2.mean() - 3.0).abs() < 1e-14);
/// assert!((chi2.variance() - 6.0).abs() < 1e-14);
/// ```
#[derive(Debug, Clone, Copy)]
pub struct ChiSquared<T> {
    k: T, // degrees of freedom
}

impl<T: FloatScalar> ChiSquared<T> {
    /// Create a chi-squared distribution with `k` degrees of freedom. Requires `k > 0`.
    pub fn new(k: T) -> Result<Self, StatsError> {
        if k <= T::zero() {
            return Err(StatsError::InvalidParameter);
        }
        Ok(Self { k })
    }
}

impl<T: FloatScalar> ChiSquared<T> {
    /// Draw a random sample from this distribution.
    ///
    /// Chi-squared(k) = Gamma(k/2, 1/2), so we sample Gamma(k/2, 1) * 2.
    pub fn sample(&self, rng: &mut super::Rng) -> T {
        let two = T::one() + T::one();
        rng.next_gamma(self.k / two) * two
    }

    /// Fill a fixed-size array with independent samples.
    pub fn sample_array<const K: usize>(&self, rng: &mut super::Rng) -> [T; K] {
        let mut out = [T::zero(); K];
        for v in out.iter_mut() {
            *v = self.sample(rng);
        }
        out
    }
}

impl<T: FloatScalar> ContinuousDistribution<T> for ChiSquared<T> {
    fn pdf(&self, x: T) -> T {
        if x <= T::zero() {
            return T::zero();
        }
        self.ln_pdf(x).exp()
    }

    fn ln_pdf(&self, x: T) -> T {
        if x <= T::zero() {
            return T::neg_infinity();
        }
        let one = T::one();
        let two = one + one;
        let half_k = self.k / two;
        (half_k - one) * x.ln() - x / two - half_k * two.ln() - lgamma(half_k)
    }

    fn cdf(&self, x: T) -> T {
        if x <= T::zero() {
            return T::zero();
        }
        let two = T::one() + T::one();
        gamma_inc(self.k / two, x / two).unwrap_or(T::nan())
    }

    fn quantile(&self, p: T) -> T {
        let two = T::one() + T::one();
        let nine = T::from(9.0).unwrap();
        // Wilson-Hilferty approximation
        let z = normal_quantile_standard(p);
        let v = T::one() - two / (nine * self.k) + z * (two / (nine * self.k)).sqrt();
        let x0 = if v > T::zero() { self.k * v * v * v } else { self.mean() };
        let hi = self.mean() + T::from(40.0).unwrap() * self.variance().sqrt();
        quantile_newton(|x| self.cdf(x), |x| self.pdf(x), p, x0, T::zero(), hi)
    }

    fn mean(&self) -> T {
        self.k
    }

    fn variance(&self) -> T {
        let two = T::one() + T::one();
        two * self.k
    }
}