Enum noodles::vcf::header::ParseError[−][src]

pub enum ParseError {
Show 17 variants    MissingFileFormat,
    UnexpectedFileFormat,
    InvalidFileFormat(ParseError),
    InvalidRecord(ParseError),
    InvalidRecordValue,
    InvalidInfo(TryFromRecordError),
    InvalidFilter(TryFromRecordError),
    InvalidFormat(TryFromRecordError),
    InvalidAlternativeAllele(TryFromRecordError),
    InvalidContig(TryFromRecordError),
    InvalidMeta(TryFromRecordError),
    InvalidSample(TryFromRecordError),
    InvalidPedigree(TryFromRecordError),
    MissingHeader,
    InvalidHeader(String, String),
    DuplicateSampleName(String),
    ExpectedEof,
}

Expand description

An error returned when a raw VCF header fails to parse.

Variants

MissingFileFormat

The file format (fileformat) is missing.

UnexpectedFileFormat

The file format (fileformat) appears other than the first line.

InvalidFileFormat(ParseError)

The file format (fileformat) is invalid.

Tuple Fields of InvalidFileFormat

0: ParseError

InvalidRecord(ParseError)

A record is invalid.

Tuple Fields of InvalidRecord

0: ParseError

InvalidRecordValue

A record has an invalid value.

InvalidInfo(TryFromRecordError)

An information record (INFO) is invalid.

Tuple Fields of InvalidInfo

0: TryFromRecordError

InvalidFilter(TryFromRecordError)

A filter record (FILTER) is invalid.

Tuple Fields of InvalidFilter

0: TryFromRecordError

InvalidFormat(TryFromRecordError)

A genotype format record (FORMAT) is invalid.

Tuple Fields of InvalidFormat

0: TryFromRecordError

InvalidAlternativeAllele(TryFromRecordError)

A symboloic alternate allele record (ALT) is invalid.

Tuple Fields of InvalidAlternativeAllele

0: TryFromRecordError

InvalidContig(TryFromRecordError)

A contig record (contig) is invalid.

Tuple Fields of InvalidContig

0: TryFromRecordError

InvalidMeta(TryFromRecordError)

A meta record (META) is invalid.

Tuple Fields of InvalidMeta

0: TryFromRecordError

InvalidSample(TryFromRecordError)

A sample record (SAMPLE) is invalid.

Tuple Fields of InvalidSample

0: TryFromRecordError

InvalidPedigree(TryFromRecordError)

A pedigree record (PEDIGREE) is invalid.

Tuple Fields of InvalidPedigree

0: TryFromRecordError

MissingHeader

The header is missing.

InvalidHeader(String, String)

The header is invalid.

Tuple Fields of InvalidHeader

0: String1: String

DuplicateSampleName(String)

A sample name is duplicated.

§ 1.5 Header line syntax (2021-01-13): “Duplicate sample IDs are not allowed.”

Tuple Fields of DuplicateSampleName

0: String

ExpectedEof

More data unexpectedly appears after the header header (#CHROM…).

Trait Implementations

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impl Clone for ParseError

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pub fn clone(&self) -> ParseError

Returns a copy of the value. Read more

1.0.0[src]

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source. Read more

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impl Debug for ParseError

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pub fn fmt(&self, f: &mut Formatter<'_>) -> Result<(), Error>

Formats the value using the given formatter. Read more

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impl Display for ParseError

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pub fn fmt(&self, f: &mut Formatter<'_>) -> Result<(), Error>

Formats the value using the given formatter. Read more

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impl Error for ParseError

1.30.0[src]

fn source(&self) -> Option<&(dyn Error + 'static)>

The lower-level source of this error, if any. Read more

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fn backtrace(&self) -> Option<&Backtrace>

🔬 This is a nightly-only experimental API. (backtrace)

Returns a stack backtrace, if available, of where this error occurred. Read more

1.0.0[src]

fn description(&self) -> &str

👎 Deprecated since 1.42.0:

use the Display impl or to_string()

fn cause(&self) -> Option<&dyn Error>

👎 Deprecated since 1.33.0:

replaced by Error::source, which can support downcasting

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impl PartialEq<ParseError> for ParseError

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pub fn eq(&self, other: &ParseError) -> bool

This method tests for self and other values to be equal, and is used by ==. Read more

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pub fn ne(&self, other: &ParseError) -> bool

This method tests for !=.

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impl Eq for ParseError

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impl StructuralEq for ParseError

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impl StructuralPartialEq for ParseError

Auto Trait Implementations

impl RefUnwindSafe for ParseError

impl Send for ParseError

impl Sync for ParseError

impl Unpin for ParseError

impl UnwindSafe for ParseError

Blanket Implementations

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impl<T> Any for T where
T: 'static + ?Sized,

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pub fn type_id(&self) -> TypeId

Gets the TypeId of self. Read more

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impl<T> Borrow<T> for T where
T: ?Sized,

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pub fn borrow(&self) -> &T

Immutably borrows from an owned value. Read more

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impl<T> BorrowMut<T> for T where
T: ?Sized,

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pub fn borrow_mut(&mut self) -> &mut T

Mutably borrows from an owned value. Read more

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impl<Q, K> Equivalent<K> for Q where
Q: Eq + ?Sized,
K: Borrow<Q> + ?Sized,

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pub fn equivalent(&self, key: &K) -> bool

Compare self to key and return true if they are equal.

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impl<T> From<T> for T

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pub fn from(t: T) -> T

Performs the conversion.

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impl<T, U> Into for T where
U: From<T>,

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pub fn into(self) -> U

Performs the conversion.

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impl<T> Same<T> for T

type Output = T

Should always be Self

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impl<T> ToOwned for T where
T: Clone,

type Owned = T

The resulting type after obtaining ownership.

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pub fn to_owned(&self) -> T

Creates owned data from borrowed data, usually by cloning. Read more

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pub fn clone_into(&self, target: &mut T)

🔬 This is a nightly-only experimental API. (toowned_clone_into)

recently added

Uses borrowed data to replace owned data, usually by cloning. Read more

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impl<T> ToString for T where
T: Display + ?Sized,

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pub default fn to_string(&self) -> String

Converts the given value to a String. Read more

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impl<T, U> TryFrom for T where
U: Into<T>,

type Error = Infallible

The type returned in the event of a conversion error.

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pub fn try_from(value: U) -> Result<T, <T as TryFrom>::Error>

Performs the conversion.

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impl<T, U> TryInto for T where
U: TryFrom<T>,

type Error = >::Error

The type returned in the event of a conversion error.

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pub fn try_into(self) -> Result<U, >::Error>

Performs the conversion.

Enum noodles::vcf::header::ParseError[−][src]

Variants

Tuple Fields of InvalidFileFormat

Tuple Fields of InvalidRecord

Tuple Fields of InvalidInfo

Tuple Fields of InvalidFilter

Tuple Fields of InvalidFormat

Tuple Fields of InvalidAlternativeAllele

Tuple Fields of InvalidContig

Tuple Fields of InvalidMeta

Tuple Fields of InvalidSample

Tuple Fields of InvalidPedigree

Tuple Fields of InvalidHeader

Tuple Fields of DuplicateSampleName

Trait Implementations

impl Clone for ParseError

pub fn clone(&self) -> ParseError

fn clone_from(&mut self, source: &Self)

impl Debug for ParseError

pub fn fmt(&self, f: &mut Formatter<'_>) -> Result<(), Error>

impl Display for ParseError

pub fn fmt(&self, f: &mut Formatter<'_>) -> Result<(), Error>

impl Error for ParseError

fn source(&self) -> Option<&(dyn Error + 'static)>

fn backtrace(&self) -> Option<&Backtrace>

fn description(&self) -> &str

fn cause(&self) -> Option<&dyn Error>

impl PartialEq<ParseError> for ParseError

pub fn eq(&self, other: &ParseError) -> bool

pub fn ne(&self, other: &ParseError) -> bool

impl Eq for ParseError

impl StructuralEq for ParseError

impl StructuralPartialEq for ParseError

Auto Trait Implementations

impl RefUnwindSafe for ParseError

impl Send for ParseError

impl Sync for ParseError

impl Unpin for ParseError

impl UnwindSafe for ParseError

Blanket Implementations

impl<T> Any for T where T: 'static + ?Sized,

pub fn type_id(&self) -> TypeId

impl<T> Borrow<T> for T where T: ?Sized,

pub fn borrow(&self) -> &T

impl<T> BorrowMut<T> for T where T: ?Sized,

pub fn borrow_mut(&mut self) -> &mut T

impl<Q, K> Equivalent<K> for Q where Q: Eq + ?Sized, K: Borrow<Q> + ?Sized,

pub fn equivalent(&self, key: &K) -> bool

impl<T> From<T> for T

pub fn from(t: T) -> T

impl<T, U> Into<U> for T where U: From<T>,

pub fn into(self) -> U

impl<T> Same<T> for T

type Output = T

impl<T> ToOwned for T where T: Clone,

type Owned = T

pub fn to_owned(&self) -> T

pub fn clone_into(&self, target: &mut T)

impl<T> ToString for T where T: Display + ?Sized,

pub default fn to_string(&self) -> String

impl<T, U> TryFrom<U> for T where U: Into<T>,

type Error = Infallible

pub fn try_from(value: U) -> Result<T, <T as TryFrom<U>>::Error>

impl<T, U> TryInto<U> for T where U: TryFrom<T>,

type Error = <U as TryFrom<T>>::Error

pub fn try_into(self) -> Result<U, <U as TryFrom<T>>::Error>

impl<T> Any for T where
T: 'static + ?Sized,

impl<T> Borrow<T> for T where
T: ?Sized,

impl<T> BorrowMut<T> for T where
T: ?Sized,

impl<Q, K> Equivalent<K> for Q where
Q: Eq + ?Sized,
K: Borrow<Q> + ?Sized,

impl<T, U> Into<U> for T where
U: From<T>,

impl<T> ToOwned for T where
T: Clone,

impl<T> ToString for T where
T: Display + ?Sized,

impl<T, U> TryFrom<U> for T where
U: Into<T>,

impl<T, U> TryInto<U> for T where
U: TryFrom<T>,