Crate noodles[][src]

Expand description

noodles is a library for handling various bioinformatics file formats. It currently includes readers and writers for BAM 1.6, BCF 2.2, BGZF, CRAM 3.0, CSI, FASTA, FASTQ, GFF3, SAM 1.6, tabix, and VCF 4.3.

Modules

noodles-bam handles the reading and writing of the BAM (Binary Alignment/Map) file format.

noodles-bcf handles the reading and writing of the BCF format.

noodles-bgzf handles the reading and writing of the blocked gzip format (BGZF).

noodles-core contains shared structures and behavior among noodles libraries.

noodles-cram handles the reading and writing of the CRAM format.

noodles-csi handles the reading and writing of the coordinate-sorted index (CSI) format.

noodles-fasta handles and reading and writing of the FASTA format.

noodles-fastq handles the reading and writing of the FASTQ format.

noodles-gff handles the reading and writing of the GFF3 format.

noodles-sam handles the reading and writing of the SAM (Sequence Alignment/Map) format.

noodles-tabix handles the reading and writing of the tabix format.

noodles-vcf handles the reading and writing of the VCF format.