Enum noodles::sam::record::ParseError

pub enum ParseError {
    MissingField(Field),
    InvalidReadName(ParseError),
    InvalidFlags(ParseIntError),
    InvalidReferenceSequenceName(ParseError),
    InvalidPosition(ParseError),
    InvalidMappingQuality(ParseIntError),
    InvalidCigar(ParseError),
    InvalidMateReferenceSequenceName(ParseError),
    InvalidMatePosition(ParseError),
    InvalidTemplateLength(ParseIntError),
    InvalidSequence(ParseError),
    SequenceLengthMismatch(u32, u32),
    InvalidQualityScores(ParseError),
    QualityScoresLengthMismatch(u32, u32),
    InvalidData(ParseError),
}

An error returned when a raw SAM record fails to parse.

Variants

MissingField(Field)

A required record field is missing.

Tuple Fields of MissingField

0: Field

InvalidReadName(ParseError)

The record read name is invalid.

Tuple Fields of InvalidReadName

0: ParseError

InvalidFlags(ParseIntError)

The record flags field is invalid.

Tuple Fields of InvalidFlags

0: ParseIntError

InvalidReferenceSequenceName(ParseError)

The record reference sequence name is invalid.

Tuple Fields of InvalidReferenceSequenceName

0: ParseError

InvalidPosition(ParseError)

The record position is invalid.

Tuple Fields of InvalidPosition

0: ParseError

InvalidMappingQuality(ParseIntError)

The record mapping quality is invalid.

Tuple Fields of InvalidMappingQuality

0: ParseIntError

InvalidCigar(ParseError)

The record CIGAR string is invalid.

Tuple Fields of InvalidCigar

0: ParseError

InvalidMateReferenceSequenceName(ParseError)

The record mate reference sequence name is invalid.

Tuple Fields of InvalidMateReferenceSequenceName

0: ParseError

InvalidMatePosition(ParseError)

The record mate position is invalid.

Tuple Fields of InvalidMatePosition

0: ParseError

InvalidTemplateLength(ParseIntError)

The record template length is invalid.

Tuple Fields of InvalidTemplateLength

0: ParseIntError

InvalidSequence(ParseError)

The record sequence is invalid.

Tuple Fields of InvalidSequence

0: ParseError

SequenceLengthMismatch(u32, u32)

The sequence length does not match the CIGAR string read length.

Tuple Fields of SequenceLengthMismatch

0: u321: u32

InvalidQualityScores(ParseError)

The record quality score is invalid.

Tuple Fields of InvalidQualityScores

0: ParseError

QualityScoresLengthMismatch(u32, u32)

The quality scores length does not match the sequence length.

Tuple Fields of QualityScoresLengthMismatch

0: u321: u32

InvalidData(ParseError)

The record data is invalid.

Tuple Fields of InvalidData

0: ParseError

Trait Implementations

impl Clone for ParseError

pub fn clone(&self) -> ParseError

Returns a copy of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for ParseError

pub fn fmt(&self, f: &mut Formatter<'_>) -> Result<(), Error>

Formats the value using the given formatter.

impl Display for ParseError

pub fn fmt(&self, f: &mut Formatter<'_>) -> Result<(), Error>

Formats the value using the given formatter.

impl Error for ParseError

fn source(&self) -> Option<&(dyn Error + 'static)>

The lower-level source of this error, if any.

fn backtrace(&self) -> Option<&Backtrace>

🔬 This is a nightly-only experimental API. (backtrace)

Returns a stack backtrace, if available, of where this error occurred.

fn description(&self) -> &str

👎 Deprecated since 1.42.0:

use the Display impl or to_string()

fn cause(&self) -> Option<&dyn Error>

👎 Deprecated since 1.33.0:

replaced by Error::source, which can support downcasting

impl PartialEq<ParseError> for ParseError

pub fn eq(&self, other: &ParseError) -> bool

This method tests for self and other values to be equal, and is used by ==.

pub fn ne(&self, other: &ParseError) -> bool

This method tests for !=.

impl StructuralPartialEq for ParseError