Enum noodles::bam::record::sequence::Base

pub enum Base {
    Eq,
    A,
    C,
    M,
    G,
    R,
    S,
    V,
    T,
    W,
    Y,
    H,
    K,
    D,
    B,
    N,
}

A BAM record sequence base.

Variants

Eq

Equal to the reference base.

A

Adenine.

C

Cytosine.

M

Amino.

G

Guanine.

R

Purine.

S

Strong.

V

Not T.

T

Thymine.

W

Weak.

Y

Pyrimidine.

H

Not G.

K

Keto.

D

Not C.

B

Not A.

N

Any base.

Implementations

impl Base

pub fn complement(self) -> Base

Returns the complement of this base.

See https://en.wikipedia.org/wiki/Nucleic_acid_notation#IUPAC_notation.

Examples

use noodles_bam::record::sequence::Base;
assert_eq!(Base::A.complement(), Base::T);
assert_eq!(Base::C.complement(), Base::G);
assert_eq!(Base::G.complement(), Base::C);
assert_eq!(Base::T.complement(), Base::A);

Trait Implementations

impl Clone for Base

pub fn clone(&self) -> Base

Returns a copy of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for Base

pub fn fmt(&self, f: &mut Formatter<'_>) -> Result<(), Error>

Formats the value using the given formatter.

impl Display for Base

pub fn fmt(&self, f: &mut Formatter<'_>) -> Result<(), Error>

Formats the value using the given formatter.

impl From<Base> for Base

pub fn from(base: Base) -> Base

Performs the conversion.

impl From<Base> for Base

pub fn from(base: Base) -> Base

Performs the conversion.

impl PartialEq<Base> for Base

pub fn eq(&self, other: &Base) -> bool

This method tests for self and other values to be equal, and is used by ==.

fn ne(&self, other: &Rhs) -> bool

This method tests for !=.

impl Copy for Base

impl Eq for Base

impl StructuralEq for Base

impl StructuralPartialEq for Base