version = 4
[[package]]
name = "adler2"
version = "2.0.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "320119579fcad9c21884f5c4861d16174d0e06250625266f50fe6898340abefa"
[[package]]
name = "async-compression"
version = "0.4.41"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "d0f9ee0f6e02ffd7ad5816e9464499fba7b3effd01123b515c41d1697c43dad1"
dependencies = [
"compression-codecs",
"compression-core",
"pin-project-lite",
"tokio",
]
[[package]]
name = "bit-vec"
version = "0.9.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "b71798fca2c1fe1086445a7258a4bc81e6e49dcd24c8d0dd9a1e57395b603f51"
dependencies = [
"serde",
]
[[package]]
name = "bitflags"
version = "2.11.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "843867be96c8daad0d758b57df9392b6d8d271134fce549de6ce169ff98a92af"
[[package]]
name = "block-buffer"
version = "0.10.4"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "3078c7629b62d3f0439517fa394996acacc5cbc91c5a20d8c658e77abd503a71"
dependencies = [
"generic-array",
]
[[package]]
name = "bstr"
version = "1.12.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "63044e1ae8e69f3b5a92c736ca6269b8d12fa7efe39bf34ddb06d102cf0e2cab"
dependencies = [
"memchr",
"serde",
]
[[package]]
name = "bytes"
version = "1.11.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "1e748733b7cbc798e1434b6ac524f0c1ff2ab456fe201501e6497c8417a4fc33"
[[package]]
name = "bzip2"
version = "0.6.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "f3a53fac24f34a81bc9954b5d6cfce0c21e18ec6959f44f56e8e90e4bb7c346c"
dependencies = [
"libbz2-rs-sys",
]
[[package]]
name = "cfg-if"
version = "1.0.4"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "9330f8b2ff13f34540b44e946ef35111825727b38d33286ef986142615121801"
[[package]]
name = "compression-codecs"
version = "0.4.37"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "eb7b51a7d9c967fc26773061ba86150f19c50c0d65c887cb1fbe295fd16619b7"
dependencies = [
"compression-core",
"flate2",
"memchr",
]
[[package]]
name = "compression-core"
version = "0.4.31"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "75984efb6ed102a0d42db99afb6c1948f0380d1d91808d5529916e6c08b49d8d"
[[package]]
name = "cpufeatures"
version = "0.2.17"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "59ed5838eebb26a2bb2e58f6d5b5316989ae9d08bab10e0e6d103e656d1b0280"
dependencies = [
"libc",
]
[[package]]
name = "crc32fast"
version = "1.5.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "9481c1c90cbf2ac953f07c8d4a58aa3945c425b7185c9154d67a65e4230da511"
dependencies = [
"cfg-if",
]
[[package]]
name = "crossbeam-channel"
version = "0.5.15"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "82b8f8f868b36967f9606790d1903570de9ceaf870a7bf9fbbd3016d636a2cb2"
dependencies = [
"crossbeam-utils",
]
[[package]]
name = "crossbeam-utils"
version = "0.8.21"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "d0a5c400df2834b80a4c3327b3aad3a4c4cd4de0629063962b03235697506a28"
[[package]]
name = "crypto-common"
version = "0.1.7"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "78c8292055d1c1df0cce5d180393dc8cce0abec0a7102adb6c7b1eef6016d60a"
dependencies = [
"generic-array",
"typenum",
]
[[package]]
name = "digest"
version = "0.10.7"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "9ed9a281f7bc9b7576e61468ba615a66a5c8cfdff42420a70aa82701a3b1e292"
dependencies = [
"block-buffer",
"crypto-common",
]
[[package]]
name = "equivalent"
version = "1.0.2"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "877a4ace8713b0bcf2a4e7eec82529c029f1d0619886d18145fea96c3ffe5c0f"
[[package]]
name = "flate2"
version = "1.1.9"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "843fba2746e448b37e26a819579957415c8cef339bf08564fe8b7ddbd959573c"
dependencies = [
"crc32fast",
"miniz_oxide",
"zlib-rs",
]
[[package]]
name = "futures"
version = "0.3.32"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "8b147ee9d1f6d097cef9ce628cd2ee62288d963e16fb287bd9286455b241382d"
dependencies = [
"futures-channel",
"futures-core",
"futures-io",
"futures-sink",
"futures-task",
"futures-util",
]
[[package]]
name = "futures-channel"
version = "0.3.32"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "07bbe89c50d7a535e539b8c17bc0b49bdb77747034daa8087407d655f3f7cc1d"
dependencies = [
"futures-core",
"futures-sink",
]
[[package]]
name = "futures-core"
version = "0.3.32"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "7e3450815272ef58cec6d564423f6e755e25379b217b0bc688e295ba24df6b1d"
[[package]]
name = "futures-io"
version = "0.3.32"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "cecba35d7ad927e23624b22ad55235f2239cfa44fd10428eecbeba6d6a717718"
[[package]]
name = "futures-sink"
version = "0.3.32"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "c39754e157331b013978ec91992bde1ac089843443c49cbc7f46150b0fad0893"
[[package]]
name = "futures-task"
version = "0.3.32"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "037711b3d59c33004d3856fbdc83b99d4ff37a24768fa1be9ce3538a1cde4393"
[[package]]
name = "futures-util"
version = "0.3.32"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "389ca41296e6190b48053de0321d02a77f32f8a5d2461dd38762c0593805c6d6"
dependencies = [
"futures-channel",
"futures-core",
"futures-io",
"futures-sink",
"futures-task",
"memchr",
"pin-project-lite",
"slab",
]
[[package]]
name = "generic-array"
version = "0.14.7"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "85649ca51fd72272d7821adaf274ad91c288277713d9c18820d8499a7ff69e9a"
dependencies = [
"typenum",
"version_check",
]
[[package]]
name = "hashbrown"
version = "0.16.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "841d1cc9bed7f9236f321df977030373f4a4163ae1a7dbfe1a51a2c1a51d9100"
[[package]]
name = "indexmap"
version = "2.13.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "7714e70437a7dc3ac8eb7e6f8df75fd8eb422675fc7678aff7364301092b1017"
dependencies = [
"equivalent",
"hashbrown",
]
[[package]]
name = "lexical-core"
version = "1.0.6"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "7d8d125a277f807e55a77304455eb7b1cb52f2b18c143b60e766c120bd64a594"
dependencies = [
"lexical-parse-float",
"lexical-parse-integer",
"lexical-util",
"lexical-write-float",
"lexical-write-integer",
]
[[package]]
name = "lexical-parse-float"
version = "1.0.6"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "52a9f232fbd6f550bc0137dcb5f99ab674071ac2d690ac69704593cb4abbea56"
dependencies = [
"lexical-parse-integer",
"lexical-util",
]
[[package]]
name = "lexical-parse-integer"
version = "1.0.6"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "9a7a039f8fb9c19c996cd7b2fcce303c1b2874fe1aca544edc85c4a5f8489b34"
dependencies = [
"lexical-util",
]
[[package]]
name = "lexical-util"
version = "1.0.7"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "2604dd126bb14f13fb5d1bd6a66155079cb9fa655b37f875b3a742c705dbed17"
[[package]]
name = "lexical-write-float"
version = "1.0.6"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "50c438c87c013188d415fbabbb1dceb44249ab81664efbd31b14ae55dabb6361"
dependencies = [
"lexical-util",
"lexical-write-integer",
]
[[package]]
name = "lexical-write-integer"
version = "1.0.6"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "409851a618475d2d5796377cad353802345cba92c867d9fbcde9cf4eac4e14df"
dependencies = [
"lexical-util",
]
[[package]]
name = "libbz2-rs-sys"
version = "0.2.2"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "2c4a545a15244c7d945065b5d392b2d2d7f21526fba56ce51467b06ed445e8f7"
[[package]]
name = "libc"
version = "0.2.183"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "b5b646652bf6661599e1da8901b3b9522896f01e736bad5f723fe7a3a27f899d"
[[package]]
name = "lzma-rust2"
version = "0.16.2"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "47bb1e988e6fb779cf720ad431242d3f03167c1b3f2b1aae7f1a94b2495b36ae"
dependencies = [
"sha2",
]
[[package]]
name = "md-5"
version = "0.10.6"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "d89e7ee0cfbedfc4da3340218492196241d89eefb6dab27de5df917a6d2e78cf"
dependencies = [
"cfg-if",
"digest",
]
[[package]]
name = "memchr"
version = "2.8.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "f8ca58f447f06ed17d5fc4043ce1b10dd205e060fb3ce5b979b8ed8e59ff3f79"
[[package]]
name = "miniz_oxide"
version = "0.8.9"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "1fa76a2c86f704bdb222d66965fb3d63269ce38518b83cb0575fca855ebb6316"
dependencies = [
"adler2",
"simd-adler32",
]
[[package]]
name = "noodles-bam"
version = "0.88.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "ff57687677d53f36c3574d2350a4668825ff2fa762b6d086f779d3eeaa96b0aa"
dependencies = [
"bstr",
"futures",
"indexmap",
"memchr",
"noodles-bgzf",
"noodles-core",
"noodles-csi",
"noodles-sam",
"pin-project-lite",
"tokio",
]
[[package]]
name = "noodles-bcf"
version = "0.85.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "6af174cafaa3361322037561d2fc7a7b4aa77ff7fe6fdfde49266341d96d3df3"
dependencies = [
"futures",
"indexmap",
"memchr",
"noodles-bgzf",
"noodles-core",
"noodles-csi",
"noodles-vcf",
"pin-project-lite",
"tokio",
]
[[package]]
name = "noodles-bgzf"
version = "0.46.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "37290f565045fd2775b549e62dffca7e1afadc70d8d5a3a2ef19609eb3d8193b"
dependencies = [
"bytes",
"crossbeam-channel",
"flate2",
"futures",
"pin-project-lite",
"tokio",
"tokio-util",
]
[[package]]
name = "noodles-core"
version = "0.19.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "53e1e8a419dbba0e4000b0e60830b124138c7f2277ad556463506f1a81d32d17"
dependencies = [
"bstr",
]
[[package]]
name = "noodles-cram"
version = "0.92.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "deb428af87832b75e4ca78e6f86a189499af8f7a1988b2582eeeb9aeb85a0c37"
dependencies = [
"async-compression",
"bitflags",
"bstr",
"bzip2",
"flate2",
"futures",
"indexmap",
"lexical-core",
"lzma-rust2",
"md-5",
"noodles-bam",
"noodles-core",
"noodles-fasta",
"noodles-sam",
"pin-project-lite",
"tokio",
]
[[package]]
name = "noodles-csi"
version = "0.55.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "c9c846d8128bd80b18d891b13cb9e0bc1d364429d6ab3ec3c83939f3d32ba105"
dependencies = [
"bit-vec",
"bstr",
"futures",
"indexmap",
"noodles-bgzf",
"noodles-core",
"pin-project-lite",
"tokio",
]
[[package]]
name = "noodles-fasta"
version = "0.60.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "a5c8ccd951d43ba0a1c4dcc1f86fdc2ee86c1742de2988956bcdf1bc58905769"
dependencies = [
"bstr",
"memchr",
"noodles-bgzf",
"noodles-core",
]
[[package]]
name = "noodles-sam"
version = "0.84.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "baa5367d794dd6b766b7e9fe7ae93accfc9288f590ac61a881c29b7b307dbad2"
dependencies = [
"bitflags",
"bstr",
"futures",
"indexmap",
"lexical-core",
"memchr",
"noodles-bgzf",
"noodles-core",
"noodles-csi",
"pin-project-lite",
"tokio",
]
[[package]]
name = "noodles-tabix"
version = "0.61.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "2443d0852c9618cd4aa8d11bc7c1884285e46aa4466cf5c1e49f3d9756ca7ced"
dependencies = [
"bstr",
"indexmap",
"noodles-bgzf",
"noodles-core",
"noodles-csi",
"tokio",
]
[[package]]
name = "noodles-util"
version = "0.78.0"
dependencies = [
"bstr",
"flate2",
"futures",
"noodles-bam",
"noodles-bcf",
"noodles-bgzf",
"noodles-core",
"noodles-cram",
"noodles-csi",
"noodles-fasta",
"noodles-sam",
"noodles-vcf",
"tokio",
]
[[package]]
name = "noodles-vcf"
version = "0.87.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "12b339e85269ab7689661c690f9108dceb606bf3d230e1768799ae107d505e76"
dependencies = [
"futures",
"indexmap",
"memchr",
"noodles-bgzf",
"noodles-core",
"noodles-csi",
"noodles-tabix",
"percent-encoding",
"pin-project-lite",
"tokio",
]
[[package]]
name = "percent-encoding"
version = "2.3.2"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "9b4f627cb1b25917193a259e49bdad08f671f8d9708acfd5fe0a8c1455d87220"
[[package]]
name = "pin-project-lite"
version = "0.2.17"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "a89322df9ebe1c1578d689c92318e070967d1042b512afbe49518723f4e6d5cd"
[[package]]
name = "proc-macro2"
version = "1.0.106"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "8fd00f0bb2e90d81d1044c2b32617f68fcb9fa3bb7640c23e9c748e53fb30934"
dependencies = [
"unicode-ident",
]
[[package]]
name = "quote"
version = "1.0.45"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "41f2619966050689382d2b44f664f4bc593e129785a36d6ee376ddf37259b924"
dependencies = [
"proc-macro2",
]
[[package]]
name = "serde"
version = "1.0.228"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "9a8e94ea7f378bd32cbbd37198a4a91436180c5bb472411e48b5ec2e2124ae9e"
dependencies = [
"serde_core",
"serde_derive",
]
[[package]]
name = "serde_core"
version = "1.0.228"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "41d385c7d4ca58e59fc732af25c3983b67ac852c1a25000afe1175de458b67ad"
dependencies = [
"serde_derive",
]
[[package]]
name = "serde_derive"
version = "1.0.228"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "d540f220d3187173da220f885ab66608367b6574e925011a9353e4badda91d79"
dependencies = [
"proc-macro2",
"quote",
"syn",
]
[[package]]
name = "sha2"
version = "0.10.9"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "a7507d819769d01a365ab707794a4084392c824f54a7a6a7862f8c3d0892b283"
dependencies = [
"cfg-if",
"cpufeatures",
"digest",
]
[[package]]
name = "simd-adler32"
version = "0.3.9"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "703d5c7ef118737c72f1af64ad2f6f8c5e1921f818cdcb97b8fe6fc69bf66214"
[[package]]
name = "slab"
version = "0.4.12"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "0c790de23124f9ab44544d7ac05d60440adc586479ce501c1d6d7da3cd8c9cf5"
[[package]]
name = "syn"
version = "2.0.117"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "e665b8803e7b1d2a727f4023456bbbbe74da67099c585258af0ad9c5013b9b99"
dependencies = [
"proc-macro2",
"quote",
"unicode-ident",
]
[[package]]
name = "tokio"
version = "1.50.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "27ad5e34374e03cfffefc301becb44e9dc3c17584f414349ebe29ed26661822d"
dependencies = [
"bytes",
"pin-project-lite",
"tokio-macros",
]
[[package]]
name = "tokio-macros"
version = "2.6.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "5c55a2eff8b69ce66c84f85e1da1c233edc36ceb85a2058d11b0d6a3c7e7569c"
dependencies = [
"proc-macro2",
"quote",
"syn",
]
[[package]]
name = "tokio-util"
version = "0.7.18"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "9ae9cec805b01e8fc3fd2fe289f89149a9b66dd16786abd8b19cfa7b48cb0098"
dependencies = [
"bytes",
"futures-core",
"futures-sink",
"pin-project-lite",
"tokio",
]
[[package]]
name = "typenum"
version = "1.19.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "562d481066bde0658276a35467c4af00bdc6ee726305698a55b86e61d7ad82bb"
[[package]]
name = "unicode-ident"
version = "1.0.24"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "e6e4313cd5fcd3dad5cafa179702e2b244f760991f45397d14d4ebf38247da75"
[[package]]
name = "version_check"
version = "0.9.5"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "0b928f33d975fc6ad9f86c8f283853ad26bdd5b10b7f1542aa2fa15e2289105a"
[[package]]
name = "zlib-rs"
version = "0.6.3"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "3be3d40e40a133f9c916ee3f9f4fa2d9d63435b5fbe1bfc6d9dae0aa0ada1513"