noodles-sam 0.85.0

Sequence Alignment/Map (SAM) format reader and writer
Documentation
mod subtype;
mod values;

use std::io;

use self::subtype::parse_subtype;
pub use self::values::Values;
use crate::alignment::record::data::field::value::{Array, array::Subtype};

pub(super) fn parse_array<'a>(src: &mut &'a [u8]) -> io::Result<Array<'a>> {
    use super::parse_string;

    let subtype = parse_subtype(src)?;
    maybe_consume_delimiter(src)?;

    let buf = parse_string(src);

    match subtype {
        Subtype::Int8 => Ok(Array::Int8(Box::new(Values::new(buf)))),
        Subtype::UInt8 => Ok(Array::UInt8(Box::new(Values::new(buf)))),
        Subtype::Int16 => Ok(Array::Int16(Box::new(Values::new(buf)))),
        Subtype::UInt16 => Ok(Array::UInt16(Box::new(Values::new(buf)))),
        Subtype::Int32 => Ok(Array::Int32(Box::new(Values::new(buf)))),
        Subtype::UInt32 => Ok(Array::UInt32(Box::new(Values::new(buf)))),
        Subtype::Float => Ok(Array::Float(Box::new(Values::new(buf)))),
    }
}

fn maybe_consume_delimiter(src: &mut &[u8]) -> io::Result<()> {
    const DELIMITER: u8 = b',';

    if let Some((b, rest)) = src.split_first() {
        if *b == DELIMITER {
            *src = rest;
        } else {
            return Err(io::Error::new(
                io::ErrorKind::InvalidData,
                "invalid delimiter",
            ));
        }
    }

    Ok(())
}

#[cfg(test)]
mod tests {
    use super::*;

    #[test]
    fn test_parse_array() -> io::Result<()> {
        let src = b"c,0";
        assert!(matches!(parse_array(&mut &src[..])?, Array::Int8(_)));

        let src = b"C,0";
        assert!(matches!(parse_array(&mut &src[..])?, Array::UInt8(_)));

        let src = b"s,0";
        assert!(matches!(parse_array(&mut &src[..])?, Array::Int16(_)));

        let src = b"S,0";
        assert!(matches!(parse_array(&mut &src[..])?, Array::UInt16(_)));

        let src = b"i,0";
        assert!(matches!(parse_array(&mut &src[..])?, Array::Int32(_)));

        let src = b"I,0";
        assert!(matches!(parse_array(&mut &src[..])?, Array::UInt32(_)));

        let src = b"f,0.0";
        assert!(matches!(parse_array(&mut &src[..])?, Array::Float(_)));

        Ok(())
    }
}