nj 0.0.16

Neighbor-Joining phylogenetic tree inference. Auto-detects DNA/protein, supports multiple substitution models and bootstrap.
Documentation 
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79

# THIS FILE IS AUTOMATICALLY GENERATED BY CARGO
#
# When uploading crates to the registry Cargo will automatically
# "normalize" Cargo.toml files for maximal compatibility
# with all versions of Cargo and also rewrite `path` dependencies
# to registry (e.g., crates.io) dependencies.
#
# If you are reading this file be aware that the original Cargo.toml
# will likely look very different (and much more reasonable).
# See Cargo.toml.orig for the original contents.

[package]
edition = "2024"
name = "nj"
version = "0.0.16"
authors = ["Rens Holmer"]
build = false
autolib = false
autobins = false
autoexamples = false
autotests = false
autobenches = false
description = "Neighbor-Joining phylogenetic tree inference. Auto-detects DNA/protein, supports multiple substitution models and bootstrap."
documentation = "https://docs.rs/nj"
readme = "README.md"
keywords = [
    "phylogenetics",
    "bioinformatics",
    "newick",
    "neighbor-joining",
]
categories = [
    "science",
    "algorithms",
    "command-line-utilities",
]
license = "MIT"
repository = "https://github.com/holmrenser/nj.rs"

[features]
cli = [
    "clap",
    "indicatif",
]
default = []

[lib]
name = "nj"
crate-type = ["rlib"]
path = "src/lib.rs"

[[bin]]
name = "nj"
path = "src/main.rs"

[dependencies.bitvec]
version = "1.0.1"

[dependencies.clap]
version = "4"
features = ["derive"]
optional = true

[dependencies.getrandom]
version = "0.2"

[dependencies.indicatif]
version = "0.17"
optional = true

[dependencies.nanorand]
version = "0.8.0"

[dependencies.serde]
version = "1.0.228"
features = ["derive"]

[dependencies.ts-rs]
version = "11.1.0"