[package]
edition = "2021"
name = "needletail"
version = "0.7.2"
authors = [
"Roderick Bovee <rbovee@gmail.com>",
"Vincent Prouillet <vincent@onecodex.com>",
]
build = false
include = [
"src/**/*",
"tests/**/*",
"LICENSE",
"README.md",
"CHANGELOG.md",
]
autolib = false
autobins = false
autoexamples = false
autotests = false
autobenches = false
description = "FASTX parsing and k-mer methods"
readme = "README.md"
keywords = [
"FASTA",
"FASTQ",
"kmer",
"bioinformatics",
]
categories = [
"science",
"parsing",
]
license = "MIT"
repository = "https://github.com/onecodex/needletail"
[features]
compression = [
"bzip2",
"flate2",
"xz2",
"zstd",
]
default = ["compression"]
python = ["pyo3/extension-module"]
python_test = ["pyo3"]
xz2 = ["liblzma"]
[lib]
name = "needletail"
crate-type = [
"cdylib",
"rlib",
]
path = "src/lib.rs"
bench = false
[[test]]
name = "format_specimens"
path = "tests/format_specimens.rs"
[[test]]
name = "test_compressed"
path = "tests/test_compressed.rs"
[[test]]
name = "test_stdin"
path = "tests/test_stdin.rs"
[dependencies.buffer-redux]
version = "1"
default-features = false
[dependencies.bytecount]
version = "0.6"
features = ["runtime-dispatch-simd"]
[dependencies.bzip2]
version = "0.6"
optional = true
[dependencies.flate2]
version = "1.0.30"
optional = true
[dependencies.liblzma]
version = "0.3.1"
optional = true
[dependencies.memchr]
version = "2.7.2"
[dependencies.pyo3]
version = "0.27.2"
optional = true
[dependencies.zstd]
version = "0.13.2"
optional = true
[dev-dependencies.assert_cmd]
version = "2"
[dev-dependencies.bio]
version = "1"
[dev-dependencies.criterion]
version = "0.5"
[dev-dependencies.escargot]
version = "0.5.0"
[dev-dependencies.predicates]
version = "3"
[dev-dependencies.seq_io]
version = "0.3"
[dev-dependencies.serde]
version = "1.0"
[dev-dependencies.serde_derive]
version = "1.0"
[dev-dependencies.tempfile]
version = "3"
[dev-dependencies.toml]
version = "0.8"
[profile.release]
lto = true