ndbioimage 0.2.0

# THIS FILE IS AUTOMATICALLY GENERATED BY CARGO
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# "normalize" Cargo.toml files for maximal compatibility
# with all versions of Cargo and also rewrite `path` dependencies
# to registry (e.g., crates.io) dependencies.
#
# If you are reading this file be aware that the original Cargo.toml
# will likely look very different (and much more reasonable).
# See Cargo.toml.orig for the original contents.

[package]
edition = "2024"
rust-version = "1.94.0"
name = "ndbioimage"
version = "0.2.0"
authors = ["Wim Pomp <w.pomp@nki.nl>"]
build = "build.rs"
exclude = ["/tests"]
autolib = false
autobins = false
autoexamples = false
autotests = false
autobenches = false
description = "Read bio image formats using the bio-formats java package."
homepage = "https://git.pomppervova.nl/wim/ndbioimage/src/branch/rs"
documentation = "https://docs.rs/ndbioimage"
readme = "README.md"
keywords = [
    "bioformats",
    "imread",
    "ndarray",
    "metadata",
]
categories = [
    "multimedia::images",
    "science",
]
license = "MIT OR Apache-2.0"
repository = "https://git.pomppervova.nl/wim/ndbioimage/src/branch/rs"

[package.metadata.docs.rs]
features = [
    "bioformats_java",
    "czi",
    "tiff",
    "tiffseq",
    "movie",
    "tiffwrite",
    "movie",
]

[features]
all = [
    "bioformats_java",
    "bioformats_rust",
    "czi",
    "gpl-formats",
    "movie",
    "tiffseq",
    "tiffwrite",
    "tiff",
]
bioformats_java = [
    "dep:j4rs",
    "dep:thread_local",
    "dep:downloader",
]
bioformats_rust = [
    "dep:bioformats",
    "dep:thread_local",
]
czi = [
    "dep:libczirw-sys",
    "dep:xmltree",
    "dep:thread_local",
]
default = [
    "bioformats_java",
    "gpl-formats",
    "czi",
    "tiff",
    "tiffseq",
    "movie",
    "tiffwrite",
]
gpl-formats = []
movie = [
    "dep:ffmpeg-sidecar",
    "dep:tokio",
    "dep:ordered-float",
    "dep:indicatif",
    "dep:console",
]
python = [
    "dep:pyo3",
    "dep:numpy",
    "dep:color-eyre",
    "dep:pyo3-stub-gen",
    "dep:postcard",
    "ome-metadata/python",
]
tiff = [
    "dep:tiff",
    "dep:thread_local",
]
tiffseq = [
    "dep:tiff",
    "dep:serde_yaml",
]
tiffwrite = [
    "dep:tiffwrite",
    "dep:indicatif",
    "dep:console",
    "dep:rayon",
]

[lib]
name = "ndbioimage"
crate-type = [
    "cdylib",
    "rlib",
]
path = "src/lib.rs"

[[bin]]
name = "ndbioimage"
path = "src/main.rs"

[dependencies.bioformats]
version = "0.1"
optional = true

[dependencies.clap]
version = "4"
features = ["derive"]

[dependencies.color-eyre]
version = "0.6"
optional = true

[dependencies.console]
version = "0.16"
optional = true

[dependencies.downloader]
version = "0.2"
features = ["rustls-tls"]
optional = true
default-features = false

[dependencies.ffmpeg-sidecar]
version = "2"
optional = true

[dependencies.indexmap]
version = "2"
features = ["serde"]

[dependencies.indicatif]
version = "0.18"
features = ["rayon"]
optional = true

[dependencies.itertools]
version = "0.15"

[dependencies.j4rs]
version = "0.25"
optional = true

[dependencies.libczirw-sys]
version = "0.5"
optional = true

[dependencies.ndarray]
version = "0.17"
features = ["serde"]

[dependencies.num]
version = "0.4"

[dependencies.numpy]
version = "0.29"
optional = true

[dependencies.ome-metadata]
version = "0.5"

[dependencies.ordered-float]
version = "5"
optional = true

[dependencies.phf]
version = "0.14"
features = ["macros"]

[dependencies.postcard]
version = "1"
features = ["use-std"]
optional = true

[dependencies.pyo3]
version = "0.29"
features = [
    "abi3-py310",
    "eyre",
    "anyhow",
    "generate-import-lib",
]
optional = true

[dependencies.pyo3-stub-gen]
version = "0.23"
optional = true

[dependencies.rayon]
version = "1"
optional = true

[dependencies.regex]
version = "1"

[dependencies.serde]
version = "1"
features = [
    "rc",
    "derive",
]

[dependencies.serde_with]
version = "3"

[dependencies.serde_yaml]
version = "0.9"
optional = true

[dependencies.strum]
version = "0.28"
features = ["derive"]

[dependencies.thiserror]
version = "2"

[dependencies.thread_local]
version = "1"
optional = true

[dependencies.tiff]
version = "0.11"
features = ["zstd"]
optional = true

[dependencies.tiffwrite]
version = "2026.6.0"
optional = true

[dependencies.tokio]
version = "1"
features = [
    "rt",
    "rt-multi-thread",
]
optional = true

[dependencies.xmltree]
version = "0.12"
optional = true

[dev-dependencies.rayon]
version = "1"

[dev-dependencies.regex]
version = "1"

[build-dependencies.ffmpeg-sidecar]
version = "2"

[build-dependencies.j4rs]
version = "0.25"

[build-dependencies.retry]
version = "2"

[build-dependencies.toml]
version = "1"

[profile.dev.package.backtrace]
opt-level = 3

[profile.test]
inherits = "release"