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//! A collection of structs and traits to interpolate data along the first axis
//!
//! # Interpolator
//! - [`Interp1D`] The interpolator used with any strategy
//! - [`Interp1DBuilder`] Configure the interpolator
//!
//! # Traits
//! - [`Interp1DStrategy`] The trait used to specialize [`Interp1D`] with the correct strategy
//! - [`Interp1DStrategyBuilder`] The trait used to specialize [`Interp1DBuilder`] to initialize the correct strategy
//!
//! # Strategies
//! - [`Linear`] Linear interpolation strategy
//! - [`CubicSpline`] Cubic spline interpolation strategy
use std::{any::TypeId, fmt::Debug, ops::Sub};
use ndarray::{
Array, ArrayBase, ArrayView, ArrayViewMut, ArrayViewMut1, Axis, AxisDescription, Data, DimAdd,
Dimension, IntoDimension, Ix1, OwnedRepr, RemoveAxis, Slice, Zip,
};
use num_traits::{cast, Num, NumCast};
use crate::{
cast_unchecked,
dim_extensions::DimExtension,
vector_extensions::{Monotonic, VectorExtensions},
BuilderError, InterpolateError,
};
mod aliases;
mod strategies;
pub use aliases::*;
pub use strategies::{CubicSpline, Interp1DStrategy, Interp1DStrategyBuilder, Linear};
/// One dimensional interpolator
#[derive(Debug)]
pub struct Interp1D<Sd, Sx, D, Strat>
where
Sd: Data,
Sd::Elem: Num + Debug + Send,
Sx: Data<Elem = Sd::Elem>,
D: Dimension,
Strat: Interp1DStrategy<Sd, Sx, D>,
{
/// x values are guaranteed to be strict monotonically rising
x: ArrayBase<Sx, Ix1>,
data: ArrayBase<Sd, D>,
strategy: Strat,
}
impl<Sd, D> Interp1D<Sd, OwnedRepr<Sd::Elem>, D, Linear>
where
Sd: Data,
Sd::Elem: Num + PartialOrd + NumCast + Copy + Debug + Send,
D: Dimension + RemoveAxis,
{
/// Get the [Interp1DBuilder]
pub fn builder(data: ArrayBase<Sd, D>) -> Interp1DBuilder<Sd, OwnedRepr<Sd::Elem>, D, Linear> {
Interp1DBuilder::new(data)
}
}
impl<Sd, Sx, Strat> Interp1D<Sd, Sx, Ix1, Strat>
where
Sd: Data,
Sd::Elem: Num + PartialOrd + NumCast + Copy + Debug + Sub + Send,
Sx: Data<Elem = Sd::Elem>,
Strat: Interp1DStrategy<Sd, Sx, Ix1>,
{
/// convinient interpolation function for interpolation at one point
/// when the data dimension is [`type@Ix1`]
///
/// ```rust
/// # use ndarray_interp::*;
/// # use ndarray_interp::interp1d::*;
/// # use ndarray::*;
/// # use approx::*;
/// let data = array![1.0, 1.5, 2.0];
/// let x = array![1.0, 2.0, 3.0];
/// let query = 1.5;
/// let expected = 1.25;
///
/// let interpolator = Interp1DBuilder::new(data).x(x).build().unwrap();
/// let result = interpolator.interp_scalar(query).unwrap();
/// # assert_eq!(result, expected);
/// ```
pub fn interp_scalar(&self, x: Sx::Elem) -> Result<Sd::Elem, InterpolateError> {
let mut buffer: [Sd::Elem; 1] = [cast(0.0).unwrap_or_else(|| unimplemented!())];
let buf_view = ArrayViewMut1::from(buffer.as_mut_slice()).remove_axis(Axis(0));
self.strategy
.interp_into(self, buf_view, x)
.map(|_| buffer[0])
}
}
impl<Sd, Sx, D, Strat> Interp1D<Sd, Sx, D, Strat>
where
Sd: Data,
Sd::Elem: Num + PartialOrd + NumCast + Copy + Debug + Sub + Send,
Sx: Data<Elem = Sd::Elem>,
D: Dimension + RemoveAxis,
Strat: Interp1DStrategy<Sd, Sx, D>,
{
/// Calculate the interpolated values at `x`.
/// Returns the interpolated data in an array one dimension smaller than
/// the data dimension.
///
/// ```rust
/// # use ndarray_interp::*;
/// # use ndarray_interp::interp1d::*;
/// # use ndarray::*;
/// # use approx::*;
/// // data has 2 dimension:
/// let data = array![
/// [0.0, 2.0, 4.0],
/// [0.5, 2.5, 3.5],
/// [1.0, 3.0, 3.0],
/// ];
/// let query = 0.5;
/// let expected = array![0.25, 2.25, 3.75];
///
/// let interpolator = Interp1DBuilder::new(data).build().unwrap();
/// let result = interpolator.interp(query).unwrap();
/// # assert_abs_diff_eq!(result, expected, epsilon=f64::EPSILON);
/// ```
///
/// Concider using [`interp_scalar(x)`](Interp1D::interp_scalar)
/// when the data dimension is [`type@Ix1`]
pub fn interp(&self, x: Sx::Elem) -> Result<Array<Sd::Elem, D::Smaller>, InterpolateError> {
let dim = self.data.raw_dim().remove_axis(Axis(0));
let mut target: Array<Sd::Elem, _> = Array::zeros(dim);
self.strategy
.interp_into(self, target.view_mut(), x)
.map(|_| target)
}
/// Calculate the interpolated values at `x`.
/// and stores the result into the provided buffer.
///
/// The provided buffer must have the same shape as the interpolation data
/// with the first axis removed.
///
/// This can improve performance compared to [`interp`](Interp1D::interp)
/// because it does not allocate any memory for the result
///
/// # Panics
/// When the provided buffer is too small or has the wrong shape
pub fn interp_into(
&self,
x: Sx::Elem,
buffer: ArrayViewMut<'_, Sd::Elem, D::Smaller>,
) -> Result<(), InterpolateError> {
self.strategy.interp_into(self, buffer, x)
}
/// Calculate the interpolated values at all points in `xs`
/// See [`interp_array_into`](Interp1D::interp_array_into) for dimension information
///
/// ```rust
/// # use ndarray_interp::*;
/// # use ndarray_interp::interp1d::*;
/// # use ndarray::*;
/// # use approx::*;
/// let data = array![0.0, 0.5, 1.0 ];
/// let x = array![0.0, 1.0, 2.0 ];
/// let query = array![0.5, 1.0, 1.5 ];
/// let expected = array![0.25, 0.5, 0.75];
///
/// let interpolator = Interp1DBuilder::new(data)
/// .x(x)
/// .strategy(Linear::new())
/// .build().unwrap();
/// let result = interpolator.interp_array(&query).unwrap();
/// # assert_abs_diff_eq!(result, expected, epsilon=f64::EPSILON);
/// ```
pub fn interp_array<Sq, Dq>(
&self,
xs: &ArrayBase<Sq, Dq>,
) -> Result<Array<Sd::Elem, <Dq as DimAdd<D::Smaller>>::Output>, InterpolateError>
where
Sq: Data<Elem = Sd::Elem>,
Dq: Dimension + DimAdd<D::Smaller> + 'static,
<Dq as DimAdd<D::Smaller>>::Output: DimExtension,
{
let dim = self.get_buffer_shape(xs.raw_dim());
debug_assert_eq!(dim.ndim(), self.data.ndim() + xs.ndim() - 1);
let mut ys = Array::zeros(dim);
self.interp_array_into(xs, ys.view_mut()).map(|_| ys)
}
/// Calculate the interpolated values at all points in `xs`
/// and stores the result into the provided buffer
///
/// This can improve performance compared to [`interp_array`](Interp1D::interp_array)
/// because it does not allocate any memory for the result
///
/// # Dimensions
/// given the data dimension is `N` and the dimension of `xs` is `M`
/// the buffer must have dimension `M + N - 1` where the first
/// `M` dimensions correspond to the dimensions of `xs`.
///
/// Lets assume we hava a data dimension of `N = (2, 3, 4)` and query this data
/// with an array of dimension `M = (10)`, the return dimension will be `(10, 3, 4)`
/// given a multi dimensional qurey of `M = (10, 20)` the return will be `(10, 20, 3, 4)`
///
/// ```rust
/// # use ndarray_interp::*;
/// # use ndarray_interp::interp1d::*;
/// # use ndarray::*;
/// # use approx::*;
/// // data has 2 dimension:
/// let data = array![
/// [0.0, 2.0],
/// [0.5, 2.5],
/// [1.0, 3.0],
/// ];
/// let x = array![
/// 0.0,
/// 1.0,
/// 2.0,
/// ];
/// // query with 2 dimensions:
/// let query = array![
/// [0.0, 0.5],
/// [1.0, 1.5],
/// ];
///
/// // we need 3 buffer dimensions
/// let mut buffer = array![
/// [[0.0, 0.0], [0.0, 0.0]],
/// [[0.0, 0.0], [0.0, 0.0]],
/// ];
///
/// // what we expect in the buffer after interpolation
/// let expected = array![
/// [[0.0, 2.0], [0.25, 2.25]], // result for x=[0.0, 0.5]
/// [[0.5, 2.5], [0.75, 2.75]], // result for x=[1.0, 1.5]
/// ];
///
/// let interpolator = Interp1DBuilder::new(data)
/// .x(x)
/// .strategy(Linear::new())
/// .build().unwrap();
/// interpolator.interp_array_into(&query, buffer.view_mut()).unwrap();
/// # assert_abs_diff_eq!(buffer, expected, epsilon=f64::EPSILON);
/// ```
///
/// # panics
/// When the provided buffer is too small or has the wrong shape
pub fn interp_array_into<Sq, Dq>(
&self,
xs: &ArrayBase<Sq, Dq>,
mut buffer: ArrayViewMut<Sd::Elem, <Dq as DimAdd<D::Smaller>>::Output>,
) -> Result<(), InterpolateError>
where
Sq: Data<Elem = Sd::Elem>,
Dq: Dimension + DimAdd<D::Smaller> + 'static,
<Dq as DimAdd<D::Smaller>>::Output: DimExtension,
{
//self.dim_check(xs.raw_dim(), buffer.raw_dim());
if TypeId::of::<Dq>() == TypeId::of::<Ix1>() {
// Safety: We checked that `Dq` has type `Ix1`.
// Therefor the `&ArrayBase<Sq, Dq>` and `&ArrayBase<Sq, Ix1>` must be the same type.
let xs_1d = unsafe { cast_unchecked::<&ArrayBase<Sq, Dq>, &ArrayBase<Sq, Ix1>>(xs) };
// Safety: `<Dq as DimAdd<D::Smaller>>::Output>` reducees the dimension of `D` by one,
// and adds the dimension of `Dq`.
// Given that `Dq` has type `Ix1` the resulting dimension will be `D` again.
// `D` might be of type `IxDyn` In that case `IxDyn::Smaller` => `IxDyn` and also `Ix1::DimAdd<IxDyn>::Output` => `IxDyn`
let buffer_d = unsafe {
cast_unchecked::<
ArrayViewMut<Sd::Elem, <Dq as DimAdd<D::Smaller>>::Output>,
ArrayViewMut<Sd::Elem, D>,
>(buffer)
};
return self.interp_array_into_1d(xs_1d, buffer_d);
}
// Perform interpolation for each index
for (index, &x) in xs.indexed_iter() {
let current_dim = index.clone().into_dimension();
let subview =
buffer.slice_each_axis_mut(|AxisDescription { axis: Axis(nr), .. }| {
match current_dim.as_array_view().get(nr) {
Some(idx) => Slice::from(*idx..*idx + 1),
None => Slice::from(..),
}
});
let subview = match subview.into_shape(self.data.raw_dim().remove_axis(Axis(0))) {
Ok(view) => view,
Err(err) => {
let expect = self.get_buffer_shape(xs.raw_dim()).into_pattern();
let got = buffer.dim();
panic!("{err} expected: {expect:?}, got: {got:?}")
}
};
self.strategy.interp_into(self, subview, x)?;
}
Ok(())
}
fn interp_array_into_1d<Sq>(
&self,
xs: &ArrayBase<Sq, Ix1>,
mut buffer: ArrayViewMut<'_, Sd::Elem, D>,
) -> Result<(), InterpolateError>
where
Sq: Data<Elem = Sd::Elem>,
{
Zip::from(xs)
.and(buffer.axis_iter_mut(Axis(0)))
.fold_while(Ok(()), |_, &x, buf| {
match self.strategy.interp_into(self, buf, x) {
Ok(_) => ndarray::FoldWhile::Continue(Ok(())),
Err(e) => ndarray::FoldWhile::Done(Err(e)),
}
})
.into_inner()
}
/// the required shape of the buffer when calling [`interp_array_into`]
fn get_buffer_shape<Dq>(&self, dq: Dq) -> <Dq as DimAdd<D::Smaller>>::Output
where
Dq: Dimension + DimAdd<D::Smaller>,
<Dq as DimAdd<D::Smaller>>::Output: DimExtension,
{
let binding = dq.as_array_view();
let lenghts = binding.iter().chain(self.data.shape()[1..].iter()).copied();
<Dq as DimAdd<D::Smaller>>::Output::new(lenghts)
}
/// Create a interpolator without any data validation. This is fast and cheap.
///
/// # Safety
/// The following data properties are assumed, but not checked:
/// - `x` is stricktly monotonic rising
/// - `data.shape()[0] == x.len()`
/// - the `strategy` is porperly initialized with the data
pub fn new_unchecked(x: ArrayBase<Sx, Ix1>, data: ArrayBase<Sd, D>, strategy: Strat) -> Self {
Interp1D { x, data, strategy }
}
/// get `(x, data)` coordinate at given index
///
/// # panics
/// when index out of bounds
pub fn index_point(&self, index: usize) -> (Sx::Elem, ArrayView<Sd::Elem, D::Smaller>) {
let view = self.data.index_axis(Axis(0), index);
(self.x[index], view)
}
/// The index of a known value left of, or at x.
///
/// This will never return the right most index,
/// so calling [`index_point(idx+1)`](Interp1D::index_point) is always safe.
pub fn get_index_left_of(&self, x: Sx::Elem) -> usize {
self.x.get_lower_index(x)
}
pub fn is_in_range(&self, x: Sx::Elem) -> bool {
self.x[0] <= x && x <= self.x[self.x.len() - 1]
}
}
/// Create and configure a [Interp1D] Interpolator.
///
/// # Default configuration
/// In the default configuration the interpolation strategy is [`Linear{extrapolate: false}`].
/// The data will be interpolated along [`Axis(0)`] (currently this can not be changed).
/// The index to `Axis(0)` of the data will be used as x values.
#[derive(Debug)]
pub struct Interp1DBuilder<Sd, Sx, D, Strat>
where
Sd: Data,
Sd::Elem: Num + Debug,
Sx: Data<Elem = Sd::Elem>,
D: Dimension,
{
x: ArrayBase<Sx, Ix1>,
data: ArrayBase<Sd, D>,
strategy: Strat,
}
impl<Sd, D> Interp1DBuilder<Sd, OwnedRepr<Sd::Elem>, D, Linear>
where
Sd: Data,
Sd::Elem: Num + PartialOrd + NumCast + Copy + Debug,
D: Dimension,
{
/// Create a new [Interp1DBuilder] and provide the data to interpolate.
/// When nothing else is configured [Interp1DBuilder::build] will create an Interpolator using
/// Linear Interpolation without extrapolation. As x axis the index to the data will be used.
/// On multidimensional data interpolation happens along the first axis.
pub fn new(data: ArrayBase<Sd, D>) -> Self {
let len = data.shape()[0];
Interp1DBuilder {
x: Array::from_iter((0..len).map(|n| {
cast(n).unwrap_or_else(|| {
unimplemented!("casting from usize to a number should always work")
})
})),
data,
strategy: Linear::new(),
}
}
}
impl<Sd, Sx, D, Strat> Interp1DBuilder<Sd, Sx, D, Strat>
where
Sd: Data,
Sd::Elem: Num + PartialOrd + NumCast + Copy + Debug + Send,
Sx: Data<Elem = Sd::Elem>,
D: Dimension + RemoveAxis,
Strat: Interp1DStrategyBuilder<Sd, Sx, D>,
{
/// Add an custom x axis for the data. The axis needs to have the same lenght
/// and store the same Type as the data. `x` must be strict monotonic rising.
/// If the x axis is not set the index `0..data.len() - 1` is used
pub fn x<NewSx>(self, x: ArrayBase<NewSx, Ix1>) -> Interp1DBuilder<Sd, NewSx, D, Strat>
where
NewSx: Data<Elem = Sd::Elem>,
{
let Interp1DBuilder { data, strategy, .. } = self;
Interp1DBuilder { x, data, strategy }
}
/// Set the interpolation strategy by providing a [Interp1DStrategyBuilder].
/// By default [Linear] with `Linear{extrapolate: false}` is used.
pub fn strategy<NewStrat>(self, strategy: NewStrat) -> Interp1DBuilder<Sd, Sx, D, NewStrat>
where
NewStrat: Interp1DStrategyBuilder<Sd, Sx, D>,
{
let Interp1DBuilder { x, data, .. } = self;
Interp1DBuilder { x, data, strategy }
}
/// Validate input data and create the configured [Interp1D]
pub fn build(self) -> Result<Interp1D<Sd, Sx, D, Strat::FinishedStrat>, BuilderError> {
use self::Monotonic::*;
use BuilderError::*;
let Interp1DBuilder { x, data, strategy } = self;
if data.ndim() < 1 {
return Err(DimensionError(
"data dimension is 0, needs to be at least 1".into(),
));
}
if data.shape()[0] < Strat::MINIMUM_DATA_LENGHT {
return Err(NotEnoughData(format!(
"The chosen Interpolation strategy needs at least {} data points",
Strat::MINIMUM_DATA_LENGHT
)));
}
if !matches!(x.monotonic_prop(), Rising { strict: true }) {
return Err(Monotonic(
"Values in the x axis need to be strictly monotonic rising".into(),
));
}
if x.len() != data.shape()[0] {
return Err(BuilderError::AxisLenght(format!(
"Lengths of x and data axis need to match. Got x: {:}, data: {:}",
x.len(),
data.shape()[0],
)));
}
let strategy = strategy.build(&x, &data)?;
Ok(Interp1D { x, data, strategy })
}
}
#[cfg(test)]
mod tests {
use approx::assert_abs_diff_eq;
use ndarray::{array, Array, Array1, IxDyn};
use rand::{
distributions::{uniform::SampleUniform, Uniform},
rngs::StdRng,
Rng, SeedableRng,
};
use super::Interp1D;
fn rand_arr<T: SampleUniform>(size: usize, range: (T, T), seed: u64) -> Array1<T> {
Array::from_iter(
StdRng::seed_from_u64(seed)
.sample_iter(Uniform::new_inclusive(range.0, range.1))
.take(size),
)
}
macro_rules! get_interp {
($dim:expr, $shape:expr) => {{
let arr = rand_arr(4usize.pow($dim), (0.0, 1.0), 64)
.into_shape($shape)
.unwrap();
Interp1D::builder(arr).build().unwrap()
}};
}
macro_rules! test_dim {
($name:ident, $dim:expr, $shape:expr) => {
#[test]
fn $name() {
let interp = get_interp!($dim, $shape);
let res = interp.interp(2.2).unwrap();
assert_eq!(res.ndim(), $dim - 1);
let mut buf = Array::zeros(res.dim());
interp.interp_into(2.2, buf.view_mut()).unwrap();
assert_abs_diff_eq!(buf, res, epsilon = f64::EPSILON);
let query = array![[0.5, 1.0], [1.5, 2.0]];
let res = interp.interp_array(&query).unwrap();
assert_eq!(res.ndim(), $dim - 1 + query.ndim());
let mut buf = Array::zeros(res.dim());
interp.interp_array_into(&query, buf.view_mut()).unwrap();
assert_abs_diff_eq!(buf, res, epsilon = f64::EPSILON);
}
};
}
test_dim!(interp1d_1d, 1, 4);
test_dim!(interp1d_2d, 2, (4, 4));
test_dim!(interp1d_3d, 3, (4, 4, 4));
test_dim!(interp1d_4d, 4, (4, 4, 4, 4));
test_dim!(interp1d_5d, 5, (4, 4, 4, 4, 4));
test_dim!(interp1d_6d, 6, (4, 4, 4, 4, 4, 4));
test_dim!(interp1d_7d, 7, IxDyn(&[4, 4, 4, 4, 4, 4, 4]));
#[test]
fn interp1d_1d_scalar() {
let arr = rand_arr(4, (0.0, 1.0), 64);
let _res: f64 = Interp1D::builder(arr) // type check f64 as return
.build()
.unwrap()
.interp_scalar(2.2)
.unwrap();
}
#[test]
#[should_panic(expected = "expected: [4], got: [3]")]
fn interp1d_2d_into_too_small() {
let interp = get_interp!(2, (4, 4));
let mut buf = Array::zeros(3);
let _ = interp.interp_into(2.2, buf.view_mut());
}
#[test]
#[should_panic(expected = "expected: [4], got: [5]")]
fn interp1d_2d_into_too_big() {
let interp = get_interp!(2, (4, 4));
let mut buf = Array::zeros(5);
let _ = interp.interp_into(2.2, buf.view_mut());
}
#[test]
#[should_panic(expected = "expected: [2], got: [1]")] // this is not really a good message
fn interp1d_2d_array_into_too_small1() {
let arr = rand_arr((4usize).pow(2), (0.0, 1.0), 64)
.into_shape((4, 4))
.unwrap();
let interp = Interp1D::builder(arr).build().unwrap();
let mut buf = Array::zeros((1, 4));
let _ = interp.interp_array_into(&array![2.2, 2.4], buf.view_mut());
}
#[test]
#[should_panic]
fn interp1d_2d_array_into_too_small2() {
let arr = rand_arr((4usize).pow(2), (0.0, 1.0), 64)
.into_shape((4, 4))
.unwrap();
let interp = Interp1D::builder(arr).build().unwrap();
let mut buf = Array::zeros((2, 3));
let _ = interp.interp_array_into(&array![2.2, 2.4], buf.view_mut());
}
#[test]
#[should_panic]
fn interp1d_2d_array_into_too_big1() {
let arr = rand_arr((4usize).pow(2), (0.0, 1.0), 64)
.into_shape((4, 4))
.unwrap();
let interp = Interp1D::builder(arr).build().unwrap();
let mut buf = Array::zeros((3, 4));
let _ = interp.interp_array_into(&array![2.2, 2.4], buf.view_mut());
}
#[test]
#[should_panic]
fn interp1d_2d_array_into_too_big2() {
let arr = rand_arr((4usize).pow(2), (0.0, 1.0), 64)
.into_shape((4, 4))
.unwrap();
let interp = Interp1D::builder(arr).build().unwrap();
let mut buf = Array::zeros((2, 5));
let _ = interp.interp_array_into(&array![2.2, 2.4], buf.view_mut());
}
}