na_seq 0.3.15

DNA, RNA, and amino acid sequence types and functions
Documentation 
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//! This module loads a library of Restriction enzymes.

use crate::{
    nucleotide::NucleotideGeneral::{A, C, G, T},
    restriction_enzyme::RestrictionEnzyme,
};

/// Load a set of common Restriction enzymes. Call this at program start, to load into a state field.
pub fn load_re_library() -> Vec<RestrictionEnzyme> {
    vec![
        RestrictionEnzyme::new("AanI", vec![T, T, A, T, A, A], 2),
        RestrictionEnzyme::new("AatI", vec![A, G, G, C, C, T], 2),
        RestrictionEnzyme::new("AatII", vec![G, A, C, G, T, C], 4),
        RestrictionEnzyme::new("AbsI", vec![C, C, T, C, G, A, G, G], 1),
        RestrictionEnzyme::new("Acc65I", vec![G, G, T, A, C, C], 0),
        RestrictionEnzyme::new("AflII", vec![C, T, T, A, A, G], 0),
        RestrictionEnzyme::new("AgeI", vec![A, C, C, G, G, T], 0),
        RestrictionEnzyme::new("ApaI", vec![G, G, G, C, C, C], 4),
        RestrictionEnzyme::new("AscI", vec![G, G, C, G, C, G, C, C], 1),
        RestrictionEnzyme::new("AseI", vec![A, T, T, A, A, T], 1),
        RestrictionEnzyme::new("AsiSI", vec![G, C, G, A, T, C, G, C], 4),
        RestrictionEnzyme::new("BamHI", vec![G, G, A, T, C, C], 0),
        RestrictionEnzyme::new("BcII", vec![T, G, A, T, C, A], 0),
        // RestrictionEnzyme::new("BglI", vec![], 0),
        RestrictionEnzyme::new("BglII", vec![A, G, A, T, C, T], 0),
        RestrictionEnzyme::new("BmtI", vec![G, C, T, A, G, C], 4),
        RestrictionEnzyme::new("BsgDI", vec![A, T, C, G, A, T], 1),
        RestrictionEnzyme::new("BsgEI", vec![T, C, C, G, G, A], 0),
        RestrictionEnzyme::new("BsgHI", vec![T, C, A, T, G, A], 0),
        RestrictionEnzyme::new("BspEI", vec![T, C, C, G, G, A], 0),
        RestrictionEnzyme::new("BstBI", vec![T, T, C, G, A, A], 1),
        RestrictionEnzyme::new("ClaI", vec![A, T, C, G, A, T], 1),
        RestrictionEnzyme::new("EcoRI", vec![G, A, A, T, T, C], 0),
        RestrictionEnzyme::new("EcoRV", vec![G, A, T, A, T, C], 2),
        RestrictionEnzyme::new("HindIII", vec![A, A, G, C, T, T], 0),
        RestrictionEnzyme::new("FspI", vec![T, G, C, G, C, A], 2),
        // todo: TOo common
        // RestrictionEnzyme::new("HhaI", vec![G, C, G, C], 2),
        RestrictionEnzyme::new("HpaI", vec![G, T, T, A, A, C], 2),
        RestrictionEnzyme::new("KnpI", vec![G, G, T, A, C, C], 4),
        RestrictionEnzyme::new("MauBI", vec![C, G, C, G, C, G, C, G], 1),
        RestrictionEnzyme::new("MscI", vec![T, G, G, C, C, A], 2),
        RestrictionEnzyme::new("NdeI", vec![C, A, T, A, T, G], 1),
        RestrictionEnzyme::new("NotI", vec![G, C, G, G, C, C, G, C], 1),
        RestrictionEnzyme::new("NruI", vec![T, C, G, C, G, A], 2),
        RestrictionEnzyme::new("NsiI", vec![A, T, G, C, A, T], 4),
        RestrictionEnzyme::new("PacI", vec![T, T, A, A, T, T, A, A], 4),
        RestrictionEnzyme::new("PciI", vec![A, C, A, T, G, T], 0),
        RestrictionEnzyme::new("PmeI", vec![G, T, T, T, A, A, A, C], 4),
        RestrictionEnzyme::new("PmII", vec![C, A, C, G, T, G], 2),
        RestrictionEnzyme::new("PmlI", vec![C, A, C, G, T, G], 2),
        RestrictionEnzyme::new("PsiI", vec![T, T, A, T, A, A], 2),
        RestrictionEnzyme::new("PspOMI", vec![G, G, G, C, C, C], 0),
        RestrictionEnzyme::new("PstI", vec![C, T, G, C, A, G], 4),
        RestrictionEnzyme::new("SacI", vec![G, A, G, C, T, C], 4),
        // RestrictionEnzyme::new("SapI", vec![G, C, T, C, T, T, C], 4), // todo: Unclea on the cut site
        RestrictionEnzyme::new("SalI", vec![G, T, C, G, A, C], 0),
        RestrictionEnzyme::new("ScaI", vec![A, G, T, A, C, T], 2),
        RestrictionEnzyme::new("SmaI", vec![C, C, C, G, G, G], 2),
        RestrictionEnzyme::new("SfbI", vec![C, C, T, G, C, A, G, G], 5),
        RestrictionEnzyme::new("SfoI", vec![G, G, C, G, C, C], 2),
        RestrictionEnzyme::new("SpeI", vec![A, C, T, A, G, T], 0),
        RestrictionEnzyme::new("SphI", vec![G, C, A, T, G, C], 4),
        RestrictionEnzyme::new("SrfI", vec![G, C, C, C, G, G, G, C], 3),
        RestrictionEnzyme::new("StuI", vec![A, G, G, C, C, T], 2),
        RestrictionEnzyme::new("XbaI", vec![T, C, T, A, G, A], 0),
        RestrictionEnzyme::new("XhoI", vec![C, T, C, G, A, G], 0),
        RestrictionEnzyme::new("ZraI", vec![G, A, C, G, T, C], 2),
        // RestrictionEnzyme::new("HaeIII", vec![G, G, C, C], 1), // Too many matches
    ]
}