mzident 0.1.0

Handle all kinds of identified peptidoform files.
Documentation
Spectrum	Spectrum File	Peptide	Modified Peptide	Extended Peptide	Prev AA	Next AA	Peptide Length	Charge	Retention	Observed Mass	Calibrated Observed Mass	Observed M/Z	Calibrated Observed M/Z	Calculated Peptide Mass	Calculated M/Z	Delta Mass	Expectation	Hyperscore	Nextscore	PeptideProphet Probability	Number of Enzymatic Termini	Number of Missed Cleavages	Protein Start	Protein End	Intensity	Assigned Modifications	Observed Modifications	Purity	Is Unique	Protein	Protein ID	Entry Name	Gene	Protein Description	Mapped Genes	Mapped Proteins
20240206_EX1_UM3_6579035_SA_EXT00_SS16_pH7p5-single_res30k.03832.03832.3	D:\02-February\6579035\SS16\MSFragger3\4_res30k_1\interact.pep.xml	QVHPDTGISSK		VYVYKVIK.QVHPDTGISSK.AMGIMNSF	K	A	11	3	503.3970	1167.5969	1167.5906	390.2062	390.2041	1167.5884	390.2034	0.0022	0.00026471960000	21.3860	11.0140	0.9999	2	0	48	58	1.1243405E7			0.00	false	sp|O60814|H2B1K_HUMAN	O60814	H2B1K_HUMAN	H2BC12	Histone H2B type 1-K	H2BC1, H2BC11, H2BC12L, H2BC13, H2BC14, H2BC15, H2BC17, H2BC18, H2BC21, H2BC26, H2BC3, H2BC4, H2BC5, H2BC9	sp|P06899|H2B1J_HUMAN, sp|P23527|H2B1O_HUMAN, sp|P33778|H2B1B_HUMAN, sp|P57053|H2BFS_HUMAN, sp|P58876|H2B1D_HUMAN, sp|P62807|H2B1C_HUMAN, sp|Q16778|H2B2E_HUMAN, sp|Q5QNW6|H2B2F_HUMAN, sp|Q8N257|H2B3B_HUMAN, sp|Q93079|H2B1H_HUMAN, sp|Q96A08|H2B1A_HUMAN, sp|Q99877|H2B1N_HUMAN, sp|Q99879|H2B1M_HUMAN, sp|Q99880|H2B1L_HUMAN
20240206_EX1_UM3_6579035_SA_EXT00_SS16_pH7p5-single_res30k.03833.03833.4	D:\02-February\6579035\SS16\MSFragger3\4_res30k_1\interact.pep.xml	LAQHITYVHQHSR		PDRDNDIR.LAQHITYVHQHSR.QPPSQFEP	R	Q	13	4	503.4661	1588.8329	1588.8269	398.2155	398.2140	1588.8221	398.2128	0.0047	0.00001598673000	26.5640	11.3860	0.9924	2	0	533	545	3841888.2			0.00	true	sp|P33993|MCM7_HUMAN	P33993	MCM7_HUMAN	MCM7	DNA replication licensing factor MCM7		
20240206_EX1_UM3_6579035_SA_EXT00_SS16_pH7p5-single_res30k.03835.03835.3	D:\02-February\6579035\SS16\MSFragger3\4_res30k_1\interact.pep.xml	RVHPVSTMIK	RVHPVSTM[147]IK	ESIMKNIR.RVHPVSTMIK.GIYGIKDD	R	G	10	3	503.6042	1182.6621	1182.6564	395.2280	395.2261	1182.6542	395.2253	0.0022	0.05410656000000	15.5670	9.7440	0.9549	2	0	269	278	2613044.5	8M(15.9949)		0.00	true	sp|P00338|LDHA_HUMAN	P00338	LDHA_HUMAN	LDHA	L-lactate dehydrogenase A chain		
20240206_EX1_UM3_6579035_SA_EXT00_SS16_pH7p5-single_res30k.03836.03836.3	D:\02-February\6579035\SS16\MSFragger3\4_res30k_1\interact.pep.xml	YAAVHVHTNAAR		HGGVDAAR.YAAVHVHTNAAR.QPEIPTDP	R	Q	12	3	503.6732	1308.6769	1308.6758	437.2329	437.2325	1308.6686	437.2301	0.0072	0.00089430330000	22.0700	11.1290	0.9748	2	0	208	219	1126480.5			0.00	true	sp|P49593|PPM1F_HUMAN	P49593	PPM1F_HUMAN	PPM1F	Protein phosphatase 1F		
20240206_EX1_UM3_6579035_SA_EXT00_SS16_pH7p5-single_res30k.03839.03839.3	D:\02-February\6579035\SS16\MSFragger3\4_res30k_1\interact.pep.xml	YHTINGHNAEVR		VDKIVIQK.YHTINGHNAEVR.KAISRQEM	K	K	12	3	503.8802	1409.6904	1409.6837	470.9041	470.9018	1409.6799	470.9006	0.0037	0.00079434030000	20.3370	10.6400	0.9952	2	0	174	185	591109.75			0.00	true	sp|P22626|ROA2_HUMAN	P22626	ROA2_HUMAN	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1		
20240206_EX1_UM3_6579035_SA_EXT00_SS16_pH7p5-single_res30k.03841.03841.2	D:\02-February\6579035\SS16\MSFragger3\4_res30k_1\interact.pep.xml	KGNYAER		GRVHRIIR.KGNYAER.VGAGAPVY	R	V	7	2	504.0823	836.4199	836.4175	419.2172	419.2160	836.4140	419.2143	0.0035	0.08560515000000	15.7700	10.2640	0.6368	2	0	37	43	601093.2			0.00	false	sp|Q8IUE6|H2A2B_HUMAN	Q8IUE6	H2A2B_HUMAN	H2AC21	Histone H2A type 2-B	H2AC1, H2AC11, H2AC12, H2AC14, H2AC18, H2AC20, H2AC6, H2AJ	sp|P0C0S8|H2A1_HUMAN, sp|Q16777|H2A2C_HUMAN, sp|Q6FI13|H2A2A_HUMAN, sp|Q93077|H2A1C_HUMAN, sp|Q96KK5|H2A1H_HUMAN, sp|Q96QV6|H2A1A_HUMAN, sp|Q99878|H2A1J_HUMAN, sp|Q9BTM1|H2AJ_HUMAN
20240206_EX1_UM3_6579035_SA_EXT00_SS16_pH7p5-single_res30k.03844.03844.4	D:\02-February\6579035\SS16\MSFragger3\4_res30k_1\interact.pep.xml	GATYGKPVHHGVNQLK		GRKRPVPK.GATYGKPVHHGVNQLK.FARSIQSV	K	F	16	4	504.2902	1704.9222	1704.9090	427.2378	427.2345	1704.9059	427.2338	0.0031	0.00446798800000	16.6860	11.8410	0.9751	2	1	78	93	2501933.0			0.00	true	sp|P61313|RL15_HUMAN	P61313	RL15_HUMAN	RPL15	Large ribosomal subunit protein eL15		
20240206_EX1_UM3_6579035_SA_EXT00_SS16_pH7p5-single_res30k.03845.03845.3	D:\02-February\6579035\SS16\MSFragger3\4_res30k_1\interact.pep.xml	TATPQQAQEVHEK		VWAIGTGK.TATPQQAQEVHEK.LRGWIKSN	K	L	13	3	504.3589	1465.7305	1465.7218	489.5841	489.5812	1465.7161	489.5793	0.0057	0.00000002028558	24.5800	11.2030	1.0000	2	0	176	188	369540.88			0.00	true	sp|P60174|TPIS_HUMAN	P60174	TPIS_HUMAN	TPI1	Triosephosphate isomerase		
20240206_EX1_UM3_6579035_SA_EXT00_SS16_pH7p5-single_res30k.03850.03850.3	D:\02-February\6579035\SS16\MSFragger3\4_res30k_1\interact.pep.xml	QPSLHMSAAAASR	QPSLHM[147]SAAAASR	IDCSSSIR.QPSLHMSAAAASR.DITIFHAM	R	D	13	3	504.7689	1341.6572	1341.6520	448.2263	448.2246	1341.6458	448.2225	0.0062	0.00056625420000	19.3570	17.2120	0.9920	2	0	215	227	600742.7	6M(15.9949)		0.00	false	sp|O94776|MTA2_HUMAN	O94776	MTA2_HUMAN	MTA2	Metastasis-associated protein MTA2	MTA1, MTA3	sp|Q13330|MTA1_HUMAN, sp|Q9BTC8|MTA3_HUMAN
20240206_EX1_UM3_6579035_SA_EXT00_SS16_pH7p5-single_res30k.03853.03853.4	D:\02-February\6579035\SS16\MSFragger3\4_res30k_1\interact.pep.xml	VHGPGIQSGTTNKPNK		GCDPSRVR.VHGPGIQSGTTNKPNK.FTVETRGA	R	F	16	4	504.9762	1633.8644	1633.8582	409.4734	409.4718	1633.8535	409.4707	0.0046	0.02077550000000	15.4610	11.8930	0.4952	2	1	1360	1375	557923.06			0.00	true	sp|P21333|FLNA_HUMAN	P21333	FLNA_HUMAN	FLNA	Filamin-A		
20240206_EX1_UM3_6579035_SA_EXT00_SS16_pH7p5-single_res30k.03877.03877.3	D:\02-February\6579035\SS16\MSFragger3\4_res30k_1\interact.pep.xml	NMSVIAHVDHGK	NM[147]SVIAHVDHGK	MDKKANIR.NMSVIAHVDHGK.STITDSIV	R	S	12	3	506.8871	1322.6461	1322.6394	441.8893	441.8871	1322.6400	441.8873	-0.0006	0.00004561432000	25.7860	22.2870	1.0000	2	0	21	32	2.6859726E7	2M(15.9949)		0.00	true	sp|P13639|EF2_HUMAN	P13639	EF2_HUMAN	EEF2	Elongation factor 2		
20240206_EX1_UM3_6579035_SA_EXT00_SS16_pH7p5-single_res30k.03891.03891.3	D:\02-February\6579035\SS16\MSFragger3\4_res30k_1\interact.pep.xml	NFSIVAHVDHGK		RFPVENIR.NFSIVAHVDHGK.STIADRII	R	S	12	3	507.9585	1322.6979	1322.6927	441.9066	441.9048	1322.6731	441.8983	0.0196	0.04474558000000	16.8970	11.0430	0.3171	2	0	70	81	0			0.00	true	sp|Q8N442|GUF1_HUMAN	Q8N442	GUF1_HUMAN	GUF1	Translation factor GUF1, mitochondrial		
20240206_EX1_UM3_6579035_SA_EXT00_SS16_pH7p5-single_res30k.03897.03897.4	D:\02-February\6579035\SS16\MSFragger3\4_res30k_1\interact.pep.xml	HVLHVQLNRPNKR		IRVTSAQK.HVLHVQLNRPNKR.NAMNKVFW	K	N	13	4	508.3719	1609.9363	1609.9271	403.4914	403.4891	1609.9276	403.4892	-0.0004	0.00000018676570	30.2390	14.3650	1.0000	2	1	66	78	6.043804E7			0.00	true	sp|Q13011|ECH1_HUMAN	Q13011	ECH1_HUMAN	ECH1	Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial		
20240206_EX1_UM3_6579035_SA_EXT00_SS16_pH7p5-single_res30k.03907.03907.3	D:\02-February\6579035\SS16\MSFragger3\4_res30k_1\interact.pep.xml	VQVSYKGETK		INDGDKPK.VQVSYKGETK.AFYPEEIS	K	A	10	3	509.1674	1137.6083	1137.6039	380.2100	380.2086	1137.6029	380.2082	0.0009	0.00213765000000	15.3200	11.4920	0.9744	2	1	103	112	1620586.8			0.00	false	sp|P0DMV8|HS71A_HUMAN	P0DMV8	HS71A_HUMAN	HSPA1A	Heat shock 70 kDa protein 1A	HSPA1B	sp|P0DMV9|HS71B_HUMAN
20240206_EX1_UM3_6579035_SA_EXT00_SS16_pH7p5-single_res30k.03908.03908.5	D:\02-February\6579035\SS16\MSFragger3\4_res30k_1\interact.pep.xml	PIRPGQHPAASPTHPSAIR		GHSAQIAK.PIRPGQHPAASPTHPSAIR.GGGAFVQN	K	G	19	5	509.2365	1989.0795	1989.0684	398.8232	398.8210	1989.0656	398.8204	0.0028	0.00000001022549	31.6960	11.3420	1.0000	2	1	923	941	1701403.9			0.00	true	sp|P33176|KINH_HUMAN	P33176	KINH_HUMAN	KIF5B	Kinesin-1 heavy chain		
20240206_EX1_UM3_6579035_SA_EXT00_SS16_pH7p5-single_res30k.03915.03915.4	D:\02-February\6579035\SS16\MSFragger3\4_res30k_1\interact.pep.xml	SFSRPDHLNSHVR		YNCSHCGK.SFSRPDHLNSHVR.QVHSTERP	K	Q	13	4	509.8240	1551.7808	1551.7749	388.9525	388.9510	1550.7701	388.6998	1.0047	0.15824640000000	13.3050	10.9650	0.2435	2	1	345	357	550178.06			0.00	true	sp|P56270|MAZ_HUMAN	P56270	MAZ_HUMAN	MAZ	Myc-associated zinc finger protein		
20240206_EX1_UM3_6579035_SA_EXT00_SS16_pH7p5-single_res30k.03918.03918.4	D:\02-February\6579035\SS16\MSFragger3\4_res30k_1\interact.pep.xml	KPLTSSSAAPQRPISTQR		APAINKPK.KPLTSSSAAPQRPISTQR.TAAAPKAG	K	T	18	4	510.0313	1924.0569	1924.0483	482.0215	482.0194	1924.0490	482.0195	-0.0006	0.00000000048128	41.6260	13.2400	1.0000	2	1	151	168	6767590.5			0.00	true	sp|Q15691|MARE1_HUMAN	Q15691	MARE1_HUMAN	MAPRE1	Microtubule-associated protein RP/EB family member 1		
20240206_EX1_UM3_6579035_SA_EXT00_SS16_pH7p5-single_res30k.03919.03919.3	D:\02-February\6579035\SS16\MSFragger3\4_res30k_1\interact.pep.xml	DAVTYTEHAK		VFIENVIR.DAVTYTEHAK.RKTVTAMD	R	R	10	3	510.1004	1133.5382	1133.5359	378.8533	378.8526	1133.5352	378.8523	0.0007	0.32441770000000	14.4910	10.6000	0.8668	2	0	69	78	1830766.6			0.00	true	sp|P62805|H4_HUMAN	P62805	H4_HUMAN	H4C1	Histone H4		
20240206_EX1_UM3_6579035_SA_EXT00_SS16_pH7p5-single_res30k.03926.03926.3	D:\02-February\6579035\SS16\MSFragger3\4_res30k_1\interact.pep.xml	EDSQRPGAHLTVK		EPKRAVSR.EDSQRPGAHLTVK.KIFVGGIK	R	K	13	3	510.5855	1436.7423	1436.7379	479.9214	479.9199	1436.7370	479.9196	0.0008	0.03654860000000	15.5510	11.6570	0.9056	2	1	93	105	655305.7			0.00	false	sp|P09651|ROA1_HUMAN	P09651	ROA1_HUMAN	HNRNPA1	Heterogeneous nuclear ribonucleoprotein A1	HNRNPA1L2	sp|Q32P51|RA1L2_HUMAN