mzdata 0.63.4

A library to read mass spectrometry data formats and a data model for mass spectra
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//! Tests for imzML reader functionality

#[cfg(test)]
mod test {
    use crate::io::imzml::{is_imzml, ImzMLReader};

    #[test]
    fn test_is_imzml_detection() {
        // Test with proper imzML cvList containing IMS
        let imzml_content = br#"
            <mzML xmlns="http://psi.hupo.org/ms/mzml">
                <cvList count="3">
                    <cv id="MS" fullName="Proteomics Standards Initiative Mass Spectrometry Ontology"/>
                    <cv id="UO" fullName="Unit Ontology"/>
                    <cv id="IMS" fullName="Imaging MS Ontology"/>
                </cvList>
            </mzML>
        "#;
        assert!(is_imzml(imzml_content));

        // Test with regular mzML content (no IMS in cvList)
        let mzml_content = br#"
            <mzML xmlns="http://psi.hupo.org/ms/mzml">
                <cvList count="2">
                    <cv id="MS" fullName="Proteomics Standards Initiative Mass Spectrometry Ontology"/>
                    <cv id="UO" fullName="Unit Ontology"/>
                </cvList>
            </mzML>
        "#;
        assert!(!is_imzml(mzml_content));
        
        // Test with empty/minimal content
        let minimal_content = b"<mzML xmlns=\"http://psi.hupo.org/ms/mzml\"";
        assert!(!is_imzml(minimal_content));
    }

    #[test] 
    fn test_imzml_reader_type() {
        // This is a basic compilation test to ensure the type is correctly defined
        use std::fs::File;
        
        // The reader should be creatable with the correct type parameters
        let _reader_type = std::marker::PhantomData::<ImzMLReader<File, File>>;
        
        // Test IBD path derivation logic
        let imzml_path = std::path::Path::new("test.imzML");
        let ibd_path_lower = imzml_path.with_extension("ibd");
        let ibd_path_upper = imzml_path.with_extension("IBD");
        
        assert_eq!(ibd_path_lower, std::path::Path::new("test.ibd"));
        assert_eq!(ibd_path_upper, std::path::Path::new("test.IBD"));
    }
}