use std::{env, io, path};
use log::info;
use mzdata::io::MZReader;
use mzdata::prelude::*;
fn main() -> io::Result<()> {
env_logger::init();
let mut args = env::args().skip(1);
let path = path::PathBuf::from(args.next().expect("Please pass an MS data file path"));
let key = args
.next()
.expect("Please provide a key type, \"id\", \"index\" or \"time\"");
let key_value = args
.next()
.expect("Please provide a key value matching the key type");
info!("Opening {}", path.display());
let mut reader = MZReader::open_path(path)?;
let spectrum = match key.as_str() {
"id" => reader.get_spectrum_by_id(&key_value).unwrap(),
"index" => reader
.get_spectrum_by_index(key_value.parse().unwrap())
.unwrap(),
"time" => reader
.get_spectrum_by_time(key_value.parse().unwrap())
.unwrap(),
_ => {
panic!("Unknown key type {}", key);
}
};
println!("ID: {}; Index: {}; Time: {}", spectrum.id(), spectrum.index(), spectrum.start_time());
println!("Num data points: {}", spectrum.raw_arrays().unwrap().mzs().unwrap().len());
Ok(())
}