Enum ControlledVocabulary

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#[repr(u8)]pub enum ControlledVocabulary {
    MS = 1,
    UO = 2,
    EFO = 3,
    OBI = 4,
    HANCESTRO = 5,
    BFO = 6,
    NCIT = 7,
    BTO = 8,
    PRIDE = 9,
    Unknown = 10,
}

Expand description

Controlled vocabularies used in mass spectrometry data files

Variants§

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OBI = 4

The Ontology for Biomedical Investigations https://www.ebi.ac.uk/ols4/ontologies/obi

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HANCESTRO = 5

The Human Ancestry Ontology https://www.ebi.ac.uk/ols4/ontologies/hancestro

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BFO = 6

The Basic Formal Ontology https://www.ebi.ac.uk/ols4/ontologies/bfo

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NCIT = 7

The NCI Thesaurus OBO Edition https://www.ebi.ac.uk/ols4/ontologies/ncit

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BTO = 8

The BRENDA Tissue Ontology https://www.ebi.ac.uk/ols4/ontologies/bto

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PRIDE = 9

The PRIDE Controlled Vocabulary https://www.ebi.ac.uk/ols4/ontologies/pride

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Unknown = 10

Implementations§

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impl<'a> ControlledVocabulary

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pub const fn prefix(&self) -> Cow<'static, str>

Get the CURIE namespace prefix for this controlled vocabulary

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pub const fn as_bytes(&self) -> &'static [u8] ⓘ

Like ControlledVocabulary::prefix, but obtain a byte string instead

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pub const fn as_option(&self) -> Option<Self>

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pub fn param<A: Into<AccessionLike<'a>>, S: Into<String>>( &self, accession: A, name: S, ) -> Param

Create a Param whose accession comes from this controlled vocabulary namespace with an empty value.

§Arguments

accession: The accession code for the Param. If specified as a CURIE or a string-like type, any namespace is ignored.
name: The name of the parameter

§See Also

ControlledVocabulary::param_val

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pub const fn curie(&self, accession: AccessionIntCode) -> CURIE

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pub const fn const_param( &self, name: &'static str, value: ValueRef<'static>, accession: AccessionIntCode, unit: Unit, ) -> ParamCow<'static>

Create a ParamCow from this namespace in a const context, useful for preparing global constants or inlined variables.

All parameters must have a 'static lifetime.

§Arguments

name: The name of the controlled vocabulary term.
value: The wrapped value as a constant.
accession: The a priori determined accession code for the term
unit: The unit associated with the value

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pub const fn const_param_ident( &self, name: &'static str, accession: AccessionIntCode, ) -> ParamCow<'static>

Create a ParamCow from this namespace in a const context with an empty value and no unit.

See ControlledVocabulary::const_param for more details.

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pub const fn const_param_ident_unit( &self, name: &'static str, accession: AccessionIntCode, unit: Unit, ) -> ParamCow<'static>

Create a ParamCow from this namespace in a const context with an empty value but a specified unit.

This is intended to create a “template” that will be copied and have a value specified.

See ControlledVocabulary::const_param for more details.

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pub fn param_val<S: Into<String>, A: Into<AccessionLike<'a>>, V: Into<Value>>( &self, accession: A, name: S, value: V, ) -> Param

Create a Param whose accession comes from this controlled vocabulary namespace with the given value.

§Arguments

accession: The accession code for the Param. If specified as a CURIE or a string-like type, any namespace is ignored.
name: The name of the parameter
value: The value of the parameter