mzannotate 0.1.0

Handle fragmentation of (complex) peptidoforms.
Documentation 
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157

[dependencies.context_error]
features = ["serde"]
version = "0.2"

[dependencies.indexmap]
version = "2.11"

[dependencies.itertools]
version = "0.14"

[dependencies.mzcore]
version = "0.1.0"

[dependencies.mzdata]
default-features = false
features = ["nalgebra"]
version = "0.62"

[dependencies.ordered-float]
features = ["serde"]
version = "5.0"

[dependencies.serde]
features = ["derive", "rc"]
version = "1.0"

[dependencies.serde_json]
version = "1.0"

[dependencies.thin-vec]
features = ["serde"]
version = "0.2"

[dependencies.uom]
default-features = false
features = ["use_serde", "usize", "isize", "f64"]
version = "0.37"

[features]
coloured-errors = ["context_error/colored"]

[lib]
name = "mzannotate"
path = "src/lib.rs"

[lints.clippy]
cast_possible_truncation = "allow"
cast_precision_loss = "allow"
cast_sign_loss = "allow"
cognitive_complexity = "allow"
literal_string_with_formatting_args = "allow"
module_inception = "allow"
module_name_repetitions = "allow"
must_use_candidate = "allow"
redundant_pub_crate = "allow"
too_long_first_doc_paragraph = "allow"
too_many_lines = "allow"
unreadable_literal = "allow"
unsafe_derive_deserialize = "allow"
wildcard_imports = "allow"

[lints.clippy.all]
level = "warn"
priority = -1

[lints.clippy.nursery]
level = "warn"
priority = -1

[lints.clippy.pedantic]
level = "warn"
priority = -1

[lints.rust]
ambiguous-glob-reexports = "deny"
ambiguous_negative_literals = "warn"
clashing-extern-declarations = "deny"
const-item-mutation = "deny"
dangling-pointers-from-temporaries = "deny"
deref-nullptr = "deny"
drop-bounds = "deny"
future-incompatible = "deny"
hidden-glob-reexports = "deny"
improper-ctypes = "deny"
improper-ctypes-definitions = "deny"
invalid-from-utf8 = "deny"
invalid-macro-export-arguments = "deny"
invalid-nan-comparisons = "deny"
invalid-reference-casting = "deny"
invalid-value = "deny"
keyword-idents = "warn"
let-underscore = "warn"
macro-use-extern-crate = "warn"
meta-variable-misuse = "warn"
missing-abi = "warn"
missing-copy-implementations = "warn"
missing-debug-implementations = "warn"
missing_docs = "warn"
noop-method-call = "warn"
opaque-hidden-inferred-bound = "deny"
overlapping-range-endpoints = "deny"
redundant_imports = "warn"
redundant_lifetimes = "warn"
single-use-lifetimes = "warn"
suspicious-double-ref-op = "deny"
trivial-casts = "warn"
trivial-numeric-casts = "warn"
unconditional-recursion = "deny"
unnameable-test-items = "deny"
unreachable-pub = "deny"
unsafe-op-in-unsafe-fn = "deny"
unstable-syntax-pre-expansion = "deny"
unused-import-braces = "warn"
unused-lifetimes = "deny"
unused-qualifications = "warn"
unused_crate_dependencies = "warn"
unused_extern_crates = "warn"
unused_imports = "warn"
variant-size-differences = "warn"

[lints.rust.unexpected_cfgs]
check-cfg = ["cfg(f32)", "cfg(github_action)", "cfg(si)"]
level = "allow"
priority = 0

[lints.rust.unused]
level = "warn"
priority = -1

[package]
authors = ["Douwe Schulte <d.schulte@uu.nl>", "Ralf Gabriels", "Auke Heerdink"]
autobenches = false
autobins = false
autoexamples = false
autolib = false
autotests = false
build = false
categories = ["science::bioinformatics::proteomics", "science::bioinformatics::sequence-analysis"]
description = "Handle fragmentation of (complex) peptidoforms."
edition = "2024"
include = ["src/**/*", "tests/**/*", "README.md", "benches/**/*"]
keywords = ["spectra", "mass-spectrometry", "bio", "fragmentation", "proforma"]
license = "MIT OR Apache-2.0"
name = "mzannotate"
publish = true
readme = "README.md"
repository = "https://github.com/rusteomics/mzcore"
resolver = "2"
rust-version = "1.88.0"
version = "0.1.0"

[package.metadata.docs.rs]
cargo-args = ["-Zunstable-options", "-Zrustdoc-scrape-examples"]

[[test]]
name = "mzspeclib"
path = "tests/mzspeclib.rs"