mwalib 2.0.3

A library to simplify reading Murchison Widefield Array (MWA) raw visibilities, voltages and metadata.
Documentation
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
// This Source Code Form is subject to the terms of the Mozilla Public
// License, v. 2.0. If a copy of the MPL was not distributed with this
// file, You can obtain one at http://mozilla.org/MPL/2.0/.
use super::*;
use crate::{
    ffi::ffi_test_helpers::{
        ffi_boxed_slice_to_array, get_test_ffi_correlator_context_legacy,
        get_test_ffi_metafits_context,
    },
    metafits_context::ffi::{
        mwalib_metafits_context_display, mwalib_metafits_context_free, mwalib_metafits_context_new,
        mwalib_metafits_context_new2, mwalib_metafits_metadata_free, mwalib_metafits_metadata_get,
        MetafitsMetadata,
    },
};
use float_cmp::{approx_eq, F64Margin};
use libc::size_t;
use std::ffi::{c_char, CStr, CString};

//
// Metafits context Tests
//
#[test]
fn test_mwalib_metafits_context_new_valid() {
    // This tests for a valid metafitscontext
    let error_len: size_t = 128;
    let error_message = CString::new(" ".repeat(error_len)).unwrap();
    let error_message_ptr = error_message.as_ptr() as *mut c_char;

    let metafits_file =
        CString::new("test_files/1101503312_1_timestep/1101503312.metafits").unwrap();
    let metafits_file_ptr = metafits_file.as_ptr();

    unsafe {
        // Create a MetafitsContext
        let mut metafits_context_ptr: *mut MetafitsContext = std::ptr::null_mut();
        let retval = mwalib_metafits_context_new(
            metafits_file_ptr,
            MWAVersion::CorrLegacy,
            &mut metafits_context_ptr,
            error_message_ptr,
            error_len,
        );

        // Check return value of mwalib_metafits_context_new
        assert_eq!(retval, 0, "mwalib_metafits_context_new failure");

        // Check we got valid MetafitsContext pointer
        let context_ptr = metafits_context_ptr.as_mut();
        assert!(context_ptr.is_some());

        // Now ensure we can free the rust memory
        assert_eq!(mwalib_metafits_context_free(context_ptr.unwrap()), 0);

        // Now ensure we don't panic if we try to free a null pointer
        assert_eq!(mwalib_metafits_context_free(std::ptr::null_mut()), 0);
    }
}

#[test]
fn test_mwalib_metafits_context_new_invalid() {
    // This tests for an invalid metafitscontext (missing file)
    let error_len: size_t = 128;
    let error_message = CString::new(" ".repeat(error_len)).unwrap();
    let error_message_ptr = error_message.as_ptr() as *mut c_char;

    let metafits_file =
        CString::new("test_files/1101503312_1_timestep/missing_file.metafits").unwrap();
    let metafits_file_ptr = metafits_file.as_ptr();

    unsafe {
        // Create a MetafitsContext
        let mut metafits_context_ptr: *mut MetafitsContext = std::ptr::null_mut();
        let retval = mwalib_metafits_context_new(
            metafits_file_ptr,
            MWAVersion::CorrLegacy,
            &mut metafits_context_ptr,
            error_message_ptr,
            error_len,
        );

        // Check return value of mwalib_metafits_context_new
        assert_ne!(retval, 0);

        // get error message
        let mut ret_error_message: String = String::new();

        if retval != 0 {
            let c_str: &CStr = CStr::from_ptr(error_message_ptr);
            let str_slice: &str = c_str.to_str().unwrap();
            str_slice.clone_into(&mut ret_error_message);
        }

        // Check error message
        assert!(!ret_error_message.is_empty());
    }
}

#[test]
fn test_mwalib_metafits_context_display() {
    let metafits_context_ptr: *mut MetafitsContext =
        get_test_ffi_metafits_context(MWAVersion::CorrLegacy);

    let error_len: size_t = 128;
    let error_message = CString::new(" ".repeat(error_len)).unwrap();
    let error_message_ptr = error_message.as_ptr() as *mut c_char;

    let buf_len: size_t = 1280;
    let buf_message = CString::new(" ".repeat(buf_len)).unwrap();
    let buf_message_ptr = buf_message.as_ptr() as *mut c_char;

    unsafe {
        let retval = mwalib_metafits_context_display(
            metafits_context_ptr,
            buf_message_ptr,
            buf_len,
            error_message_ptr,
            error_len,
        );

        assert_eq!(retval, 0);

        // Check that the first few chars are "MetafitsContext ("
        let output_str = CStr::from_ptr(buf_message_ptr)
            .to_str()
            .expect("Error converting C string");
        assert!(output_str.starts_with("MetafitsContext ("));
    }
}

#[test]
fn test_mwalib_metafits_context_new_guess_mwa_version() {
    let error_len: size_t = 128;
    let error_message = CString::new(" ".repeat(error_len)).unwrap();
    let error_message_ptr = error_message.as_ptr() as *mut c_char;

    let metafits_file =
        CString::new("test_files/1101503312_1_timestep/1101503312.metafits").unwrap();
    let metafits_file_ptr = metafits_file.as_ptr();

    unsafe {
        // Create a MetafitsContext
        let mut metafits_context_ptr: *mut MetafitsContext = std::ptr::null_mut();
        let retval = mwalib_metafits_context_new2(
            metafits_file_ptr,
            &mut metafits_context_ptr,
            error_message_ptr,
            error_len,
        );

        // Check return value of mwalib_metafits_context_new
        assert_eq!(retval, 0, "mwalib_metafits_context_new failure");

        // Check we got valid MetafitsContext pointer
        let context_ptr = metafits_context_ptr.as_mut();
        assert!(context_ptr.is_some());

        let metafits_context = context_ptr.unwrap();

        assert_eq!(
            metafits_context.mwa_version.unwrap(),
            MWAVersion::CorrLegacy
        );
    }
}

#[test]
fn test_mwalib_metafits_context_display_null_ptr() {
    let metafits_context_ptr: *mut MetafitsContext = std::ptr::null_mut();

    let error_len: size_t = 128;
    let error_message = CString::new(" ".repeat(error_len)).unwrap();
    let error_message_ptr = error_message.as_ptr() as *mut c_char;
    let buf_len: size_t = 1280;
    let buf_message = CString::new(" ".repeat(buf_len)).unwrap();
    let buf_message_ptr = buf_message.as_ptr() as *mut c_char;

    unsafe {
        let retval = mwalib_metafits_context_display(
            metafits_context_ptr,
            buf_message_ptr,
            buf_len,
            error_message_ptr,
            error_len,
        );

        assert_ne!(retval, 0);
    }
}

//
// Metafits Metadata Tests
//
#[test]
fn test_mwalib_metafits_metadata_get_from_metafits_context_get_and_free() {
    // This tests for a valid metafits context and metadata returned
    let error_len: size_t = 128;
    let error_message = CString::new(" ".repeat(error_len)).unwrap();
    let error_message_ptr = error_message.as_ptr() as *mut c_char;
    // Create a MetafitsContext
    let metafits_context_ptr: *mut MetafitsContext =
        get_test_ffi_metafits_context(MWAVersion::CorrLegacy);
    unsafe {
        // Check we got valid MetafitsContext pointer
        let context_ptr = metafits_context_ptr.as_mut();
        assert!(context_ptr.is_some());

        // Populate a mwalibMetafitsMetadata struct
        let mut metafits_metadata_ptr: *mut MetafitsMetadata = std::ptr::null_mut();
        let retval = mwalib_metafits_metadata_get(
            metafits_context_ptr,
            std::ptr::null_mut(),
            std::ptr::null_mut(),
            &mut metafits_metadata_ptr,
            error_message_ptr,
            error_len,
        );

        // Check return value
        let mut ret_error_message: String = String::new();

        if retval != 0 {
            let c_str: &CStr = CStr::from_ptr(error_message_ptr);
            let str_slice: &str = c_str.to_str().unwrap();
            str_slice.clone_into(&mut ret_error_message);
        }
        assert_eq!(
            retval, 0,
            "mwalib_metafits_metadata_get failure {}",
            ret_error_message
        );

        // Get the mwalibMetadata struct from the pointer
        let metafits_metadata = Box::from_raw(metafits_metadata_ptr);

        // Now ensure we can free the rust memory
        assert_eq!(
            mwalib_metafits_metadata_free(Box::into_raw(metafits_metadata)),
            0
        );

        // Now ensure we don't panic if we try to free a null pointer
        assert_eq!(mwalib_metafits_metadata_free(std::ptr::null_mut()), 0);
    }
}

#[test]
fn test_mwalib_metafits_metadata_get_from_metafits_context_valid() {
    // This tests for a valid metafits context and metadata returned
    let error_len: size_t = 128;
    let error_message = CString::new(" ".repeat(error_len)).unwrap();
    let error_message_ptr = error_message.as_ptr() as *mut c_char;
    // Create a MetafitsContext
    let metafits_context_ptr: *mut MetafitsContext =
        get_test_ffi_metafits_context(MWAVersion::CorrLegacy);
    unsafe {
        // Check we got valid MetafitsContext pointer
        let context_ptr = metafits_context_ptr.as_mut();
        assert!(context_ptr.is_some());

        // Populate a mwalibMetafitsMetadata struct
        let mut metafits_metadata_ptr: *mut MetafitsMetadata = std::ptr::null_mut();
        let retval = mwalib_metafits_metadata_get(
            metafits_context_ptr,
            std::ptr::null_mut(),
            std::ptr::null_mut(),
            &mut metafits_metadata_ptr,
            error_message_ptr,
            error_len,
        );

        // Check return value
        let mut ret_error_message: String = String::new();

        if retval != 0 {
            let c_str: &CStr = CStr::from_ptr(error_message_ptr);
            let str_slice: &str = c_str.to_str().unwrap();
            str_slice.clone_into(&mut ret_error_message);
        }
        assert_eq!(
            retval, 0,
            "mwalib_metafits_metadata_get failure {}",
            ret_error_message
        );

        // Get the mwalibMetadata struct from the pointer
        let metafits_metadata = Box::from_raw(metafits_metadata_ptr);

        // We should get a valid obsid and no error message
        assert_eq!(metafits_metadata.obs_id, 1_101_503_312);

        //
        // Test baselines by reconstituting into a vector we can test
        //
        let item: Vec<baseline::ffi::Baseline> =
            ffi_boxed_slice_to_array(metafits_metadata.baselines, metafits_metadata.num_baselines);

        // Test specific values
        assert_eq!(item.len(), 8256, "Array length is not correct");
        assert_eq!(item[2].ant1_index, 0);
        assert_eq!(item[2].ant2_index, 2);

        //
        // Test antennas
        //
        let item: Vec<antenna::ffi::Antenna> =
            ffi_boxed_slice_to_array(metafits_metadata.antennas, metafits_metadata.num_ants);

        assert_eq!(item.len(), 128, "Array length is not correct");
        assert_eq!(
            CString::from_raw(item[127].tile_name),
            CString::new("Tile168").unwrap()
        );
        assert_eq!(item[2].tile_id, 13);

        //
        // Test rf inputs
        //
        let item: Vec<rfinput::ffi::Rfinput> =
            ffi_boxed_slice_to_array(metafits_metadata.rf_inputs, metafits_metadata.num_rf_inputs);

        assert_eq!(item.len(), 256, "Array length is not correct");
        assert_eq!(item[2].ant, 1);
        assert_eq!(
            CString::from_raw(item[2].tile_name),
            CString::new("Tile012").unwrap()
        );
        assert_eq!(CString::from_raw(item[2].pol), CString::new("X").unwrap());

        assert_eq!(item[2].num_digital_gains, 24);
        let rfinput_digital_gains =
            ffi_boxed_slice_to_array(item[2].digital_gains, item[2].num_digital_gains);
        assert_eq!(item[2].num_digital_gains, rfinput_digital_gains.len());
        assert!(item[2].calib_delay.is_nan());
        assert_eq!(item[2].num_calib_gains, 24);
        // no signal chain corrections in this metafits, so it should = 256
        assert_eq!(
            item[0].signal_chain_corrections_index,
            MAX_RECEIVER_CHANNELS
        );

        assert!(approx_eq!(
            f64,
            rfinput_digital_gains[4],
            76. / 64.,
            F64Margin::default()
        ));

        assert_eq!(item[2].num_dipole_delays, 16);
        let rfinput_dipole_delays =
            ffi_boxed_slice_to_array(item[2].dipole_delays, item[2].num_dipole_delays);
        assert_eq!(item[2].num_dipole_delays, rfinput_dipole_delays.len());
        assert_eq!(rfinput_dipole_delays[0], 0);

        assert_eq!(item[2].num_dipole_gains, 16);
        let rfinput_dipole_gains =
            ffi_boxed_slice_to_array(item[2].dipole_gains, item[2].num_dipole_gains);
        assert_eq!(item[2].num_dipole_gains, rfinput_dipole_gains.len());
        assert!(approx_eq!(
            f64,
            rfinput_dipole_gains[0],
            1.0,
            F64Margin::default()
        ));
        assert_eq!(item[2].rec_type, ReceiverType::Unknown);

        //
        // Test metafits_coarse_channels
        //
        let item: Vec<coarse_channel::ffi::CoarseChannel> = ffi_boxed_slice_to_array(
            metafits_metadata.metafits_coarse_chans,
            metafits_metadata.num_metafits_coarse_chans,
        );
        assert_eq!(item.len(), 24, "Array length is not correct");
        assert_eq!(item[0].rec_chan_number, 109);

        //
        // Test metafits_timesteps
        //
        let item: Vec<timestep::ffi::TimeStep> = ffi_boxed_slice_to_array(
            metafits_metadata.metafits_timesteps,
            metafits_metadata.num_metafits_timesteps,
        );
        assert_eq!(item.len(), 56, "Array length is not correct");
        assert_eq!(item[0].unix_time_ms, 1_417_468_096_000);
        assert_eq!(item[55].unix_time_ms, 1_417_468_206_000);

        // Test oversample flag
        assert!(!metafits_metadata.oversampled);

        // test deripple
        assert!(!metafits_metadata.deripple_applied);
        assert_eq!(
            CString::from_raw(metafits_metadata.deripple_param),
            CString::new("").unwrap()
        );

        // test calibration delays and gains
        assert!(!metafits_metadata.calibration_delays_and_gains_applied);
        // test signal chain corrections applied
        assert!(!metafits_metadata.signal_chain_corrections_applied);

        // test signal chain corrections (should be empty array)
        if metafits_metadata.num_signal_chain_corrections > 0 {
            let sig_chain_corrs = ffi_boxed_slice_to_array(
                metafits_metadata.signal_chain_corrections,
                metafits_metadata.num_signal_chain_corrections,
            );
            assert_eq!(
                sig_chain_corrs.len(),
                metafits_metadata.num_signal_chain_corrections
            );
        }

        // Note- don't try to do any free's here since, in order to test, we have had to reconstituded some of the arrays which will result in a double free
    }
}

#[test]
fn test_mwalib_metafits_metadata_get_from_metafits_context_legacy_vcs_valid() {
    // This tests for a valid metafits context and metadata returned
    let error_len: size_t = 128;
    let error_message = CString::new(" ".repeat(error_len)).unwrap();
    let error_message_ptr = error_message.as_ptr() as *mut c_char;
    // Create a MetafitsContext
    let metafits_context_ptr: *mut MetafitsContext =
        get_test_ffi_metafits_context(MWAVersion::VCSLegacyRecombined);
    unsafe {
        // Check we got valid MetafitsContext pointer
        let context_ptr = metafits_context_ptr.as_mut();
        assert!(context_ptr.is_some());

        // Populate a mwalibMetafitsMetadata struct
        let mut metafits_metadata_ptr: *mut MetafitsMetadata = std::ptr::null_mut();
        let retval = mwalib_metafits_metadata_get(
            metafits_context_ptr,
            std::ptr::null_mut(),
            std::ptr::null_mut(),
            &mut metafits_metadata_ptr,
            error_message_ptr,
            error_len,
        );

        // Check return value
        let mut ret_error_message: String = String::new();

        if retval != 0 {
            let c_str: &CStr = CStr::from_ptr(error_message_ptr);
            let str_slice: &str = c_str.to_str().unwrap();
            str_slice.clone_into(&mut ret_error_message);
        }
        assert_eq!(
            retval, 0,
            "mwalib_metafits_metadata_get failure {}",
            ret_error_message
        );

        // Get the mwalibMetadata struct from the pointer
        let metafits_metadata = Box::from_raw(metafits_metadata_ptr);

        //
        // Test antennas
        //
        let items: Vec<antenna::ffi::Antenna> =
            ffi_boxed_slice_to_array(metafits_metadata.antennas, metafits_metadata.num_ants);

        assert_eq!(items.len(), 128, "Array length is not correct");

        for item in items {
            if item.tile_id == 154 {
                assert_eq!(item.rfinput_y, 1);
            } else if item.tile_id == 104 {
                assert_eq!(item.rfinput_y, 0);
            }
        }
    }
}

#[test]
fn test_mwalib_metafits_metadata_get_null_contexts() {
    // This tests for a null context passed to mwalib_metafits_metadata_get
    let error_len: size_t = 128;
    let error_message = CString::new(" ".repeat(error_len)).unwrap();
    let error_message_ptr = error_message.as_ptr() as *mut c_char;

    unsafe {
        let mut metafits_metadata_ptr: *mut MetafitsMetadata = std::ptr::null_mut();
        let ret_val = mwalib_metafits_metadata_get(
            std::ptr::null_mut(),
            std::ptr::null_mut(),
            std::ptr::null_mut(),
            &mut metafits_metadata_ptr,
            error_message_ptr,
            error_len,
        );

        // We should get a non-zero return code
        assert_ne!(ret_val, 0);
    }
}

#[test]
fn test_mwalib_metafits_metadata_get_from_correlator_context_valid() {
    // This tests for a valid metafits metadata returned given a correlator context
    let error_len: size_t = 128;
    let error_message = CString::new(" ".repeat(error_len)).unwrap();
    let error_message_ptr = error_message.as_ptr() as *mut c_char;

    unsafe {
        // Create a CorrelatorContext
        let correlator_context_ptr: *mut CorrelatorContext =
            get_test_ffi_correlator_context_legacy();

        // Check we got valid MetafitsContext pointer
        let context_ptr = correlator_context_ptr.as_mut();
        assert!(context_ptr.is_some());

        // Populate a mwalibMetafitsMetadata struct
        let mut metafits_metadata_ptr: *mut MetafitsMetadata = std::ptr::null_mut();
        let retval = mwalib_metafits_metadata_get(
            std::ptr::null_mut(),
            correlator_context_ptr,
            std::ptr::null_mut(),
            &mut metafits_metadata_ptr,
            error_message_ptr,
            error_len,
        );

        // Check return value
        assert_eq!(
            retval, 0,
            "mwalib_metafits_metadata_get did not return success"
        );

        // Get the mwalibMetadata struct from the pointer
        let metafits_metadata = Box::from_raw(metafits_metadata_ptr);

        // We should get a valid obsid and no error message
        assert_eq!(metafits_metadata.obs_id, 1_101_503_312);

        // Now ensure we can free the rust memory
        assert_eq!(
            mwalib_metafits_metadata_free(Box::into_raw(metafits_metadata)),
            0
        );

        // Now ensure we don't panic if we try to free a null pointer
        assert_eq!(mwalib_metafits_metadata_free(std::ptr::null_mut()), 0);
    }
}